Metagenome / Metatranscriptome Family F057501

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F057501
Family Type	Metagenome / Metatranscriptome
Number of Sequences	136
Average Sequence Length	59 residues
Representative Sequence	IAATVAAAKAAGATVDRDVATVSIGGAPIKIAMLVDPQGNALEIMELPKALTHLPH
Number of Associated Samples	128
Number of Associated Scaffolds	136

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.94 %
% of genes near scaffold ends (potentially truncated)	91.91 %
% of genes from short scaffolds (< 2000 bps)	92.65 %
Associated GOLD sequencing projects	118
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (89.706 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (8.823 % of family members)
Environment Ontology (ENVO)	Unclassified (38.235 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.71% β-sheet: 30.95% Coil/Unstructured: 58.33%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 136 Family Scaffolds
PF12681	Glyoxalase_2	7.35
PF00005	ABC_tran	5.15
PF00903	Glyoxalase	4.41
PF02597	ThiS	4.41
PF13229	Beta_helix	3.68
PF00753	Lactamase_B	2.94
PF00593	TonB_dep_Rec	2.21
PF13858	DUF4199	2.21
PF12704	MacB_PCD	1.47
PF09948	DUF2182	1.47
PF00775	Dioxygenase_C	1.47
PF04828	GFA	0.74
PF07885	Ion_trans_2	0.74
PF14534	DUF4440	0.74
PF01872	RibD_C	0.74
PF02518	HATPase_c	0.74
PF12697	Abhydrolase_6	0.74
PF04116	FA_hydroxylase	0.74
PF01207	Dus	0.74
PF13442	Cytochrome_CBB3	0.74
PF01902	Diphthami_syn_2	0.74
PF16864	Dimerisation2	0.74
PF05685	Uma2	0.74
PF07519	Tannase	0.74
PF01261	AP_endonuc_2	0.74
PF02665	Nitrate_red_gam	0.74
PF07995	GSDH	0.74
PF07696	7TMR-DISMED2	0.74
PF12098	DUF3574	0.74
PF03404	Mo-co_dimer	0.74
PF06078	DUF937	0.74
PF05050	Methyltransf_21	0.74
PF11918	Peptidase_S41_N	0.74
PF00583	Acetyltransf_1	0.74
PF03795	YCII	0.74
PF00756	Esterase	0.74
PF00106	adh_short	0.74
PF00550	PP-binding	0.74

COG ID	Name	Functional Category	% Frequency in 136 Family Scaffolds
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	4.41
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	4.41
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.47
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.74
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.74
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.74
COG2102	Diphthamide synthase (EF-2-diphthine--ammonia ligase)	Translation, ribosomal structure and biogenesis [J]	0.74
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.74
COG2181	Nitrate reductase gamma subunit	Energy production and conversion [C]	0.74
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.74
COG3000	Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily	Lipid transport and metabolism [I]	0.74
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	0.74
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.74
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.71 %
Unclassified	root	N/A	10.29 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.71 %
Unclassified	root	N/A	10.29 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.71 %
Unclassified	root	N/A	10.29 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	38.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	17.65 %
Unclassified	root	N/A	10.29 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.21 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.74 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	28.68 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	14.71 %
Unclassified	root	N/A	10.29 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.41 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.21 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.74 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.74 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.71 %
Unclassified	root	N/A	10.29 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	6.62 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	5.15 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.21 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.21 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1.47 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.74 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.74 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.74 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.74 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.71 %
Unclassified	root	N/A	10.29 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	6.62 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	5.15 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.47 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.74 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.74 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.74 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.74 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.74 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.74 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.74 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.71 %
Unclassified	root	N/A	10.29 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	6.62 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	5.15 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	1.47 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.74 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	0.74 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.74 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.74 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.74 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.74 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.74 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.71 %
Unclassified	root	N/A	10.29 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	6.62 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	5.15 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	1.47 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.74 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.74 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.74 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.74 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.74 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.74 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.74 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0415866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	602	Open in IMG/M
3300001977\|JGI24746J21847_1001442	All Organisms → cellular organisms → Bacteria	3785	Open in IMG/M
3300004157\|Ga0062590_102168754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	581	Open in IMG/M
3300004780\|Ga0062378_10221758	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300005183\|Ga0068993_10109420	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300005293\|Ga0065715_10203398	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300005328\|Ga0070676_10041865	All Organisms → cellular organisms → Bacteria	2657	Open in IMG/M
3300005333\|Ga0070677_10599788	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300005340\|Ga0070689_101446717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	622	Open in IMG/M
3300005353\|Ga0070669_100616832	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300005355\|Ga0070671_101708253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	559	Open in IMG/M
3300005367\|Ga0070667_100268644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1529	Open in IMG/M
3300005367\|Ga0070667_100409446	All Organisms → cellular organisms → Bacteria	1235	Open in IMG/M
3300005436\|Ga0070713_100669103	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	990	Open in IMG/M
3300005436\|Ga0070713_102042967	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300005444\|Ga0070694_100670791	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300005456\|Ga0070678_100508224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1064	Open in IMG/M
3300005530\|Ga0070679_101739441	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300005535\|Ga0070684_100334422	All Organisms → cellular organisms → Bacteria	1392	Open in IMG/M
3300005538\|Ga0070731_10976459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	561	Open in IMG/M
3300005543\|Ga0070672_100797643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	831	Open in IMG/M
3300005545\|Ga0070695_101003085	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300005549\|Ga0070704_101578781	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300005591\|Ga0070761_10547759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	717	Open in IMG/M
3300005718\|Ga0068866_10995118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	595	Open in IMG/M
3300005764\|Ga0066903_101504210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1271	Open in IMG/M
3300005764\|Ga0066903_108471525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300005840\|Ga0068870_11080827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	576	Open in IMG/M
3300005842\|Ga0068858_100148606	All Organisms → cellular organisms → Bacteria	2202	Open in IMG/M
3300005844\|Ga0068862_101659891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	647	Open in IMG/M
3300005844\|Ga0068862_102085681	Not Available	578	Open in IMG/M
3300006194\|Ga0075427_10063969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300006847\|Ga0075431_100480474	All Organisms → cellular organisms → Bacteria	1235	Open in IMG/M
3300006853\|Ga0075420_100952407	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300006881\|Ga0068865_100263249	All Organisms → cellular organisms → Bacteria	1366	Open in IMG/M
3300006894\|Ga0079215_10223443	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300006954\|Ga0079219_11033333	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300007004\|Ga0079218_12274280	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300009078\|Ga0105106_10600882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	788	Open in IMG/M
3300009095\|Ga0079224_100675468	All Organisms → cellular organisms → Bacteria → Acidobacteria	1480	Open in IMG/M
3300009101\|Ga0105247_10193937	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1361	Open in IMG/M
3300009174\|Ga0105241_10698572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	926	Open in IMG/M
3300009176\|Ga0105242_12207036	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300009545\|Ga0105237_10084529	All Organisms → cellular organisms → Bacteria → Proteobacteria	3164	Open in IMG/M
3300009553\|Ga0105249_12147313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	631	Open in IMG/M
3300010046\|Ga0126384_11417651	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300010047\|Ga0126382_12342522	Not Available	517	Open in IMG/M
3300010359\|Ga0126376_11439545	All Organisms → cellular organisms → Bacteria → Acidobacteria	715	Open in IMG/M
3300010375\|Ga0105239_10155510	All Organisms → cellular organisms → Bacteria	2553	Open in IMG/M
3300010376\|Ga0126381_100033487	All Organisms → cellular organisms → Bacteria → Proteobacteria	6156	Open in IMG/M
3300010398\|Ga0126383_12858375	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300010399\|Ga0134127_10829182	All Organisms → cellular organisms → Bacteria → Proteobacteria	975	Open in IMG/M
3300010400\|Ga0134122_10756248	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	921	Open in IMG/M
3300010400\|Ga0134122_11055798	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	801	Open in IMG/M
3300010401\|Ga0134121_11822881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	636	Open in IMG/M
3300011433\|Ga0137443_1063713	Not Available	1021	Open in IMG/M
3300012129\|Ga0137345_1043165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	578	Open in IMG/M
3300012172\|Ga0137320_1136373	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300012212\|Ga0150985_102279303	Not Available	565	Open in IMG/M
3300012227\|Ga0137449_1143618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	523	Open in IMG/M
3300012228\|Ga0137459_1064677	Not Available	1046	Open in IMG/M
3300012232\|Ga0137435_1079852	All Organisms → cellular organisms → Bacteria → Proteobacteria	974	Open in IMG/M
3300012511\|Ga0157332_1078467	Not Available	528	Open in IMG/M
3300012512\|Ga0157327_1009050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	907	Open in IMG/M
3300012899\|Ga0157299_10061331	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	875	Open in IMG/M
3300012907\|Ga0157283_10114523	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300012944\|Ga0137410_10996357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	713	Open in IMG/M
3300012948\|Ga0126375_10222766	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300012987\|Ga0164307_11444538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	581	Open in IMG/M
3300013102\|Ga0157371_10990161	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300013306\|Ga0163162_10966043	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300014157\|Ga0134078_10610874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	523	Open in IMG/M
3300014325\|Ga0163163_10173185	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2205	Open in IMG/M
3300014325\|Ga0163163_12938677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	532	Open in IMG/M
3300015201\|Ga0173478_10518040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	601	Open in IMG/M
3300015371\|Ga0132258_10206794	All Organisms → cellular organisms → Bacteria → Proteobacteria	4765	Open in IMG/M
3300015373\|Ga0132257_103005533	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300015374\|Ga0132255_102873660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	736	Open in IMG/M
3300016371\|Ga0182034_10648367	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	894	Open in IMG/M
3300016404\|Ga0182037_12062850	Not Available	512	Open in IMG/M
3300017655\|Ga0182739_1030366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2852	Open in IMG/M
3300018058\|Ga0187766_10595307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	754	Open in IMG/M
3300018429\|Ga0190272_12763711	All Organisms → cellular organisms → Bacteria → Proteobacteria	540	Open in IMG/M
3300018432\|Ga0190275_10810956	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300019361\|Ga0173482_10541872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	573	Open in IMG/M
3300023260\|Ga0247798_1056168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	550	Open in IMG/M
3300023268\|Ga0247765_1050538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	861	Open in IMG/M
3300025580\|Ga0210138_1060297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	885	Open in IMG/M
3300025664\|Ga0208849_1086161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	888	Open in IMG/M
3300025903\|Ga0207680_10512673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	855	Open in IMG/M
3300025907\|Ga0207645_10084435	All Organisms → cellular organisms → Bacteria	2038	Open in IMG/M
3300025908\|Ga0207643_10289106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1018	Open in IMG/M
3300025914\|Ga0207671_11228272	Not Available	586	Open in IMG/M
3300025917\|Ga0207660_10393119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	1116	Open in IMG/M
3300025919\|Ga0207657_11149054	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300025926\|Ga0207659_11816196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	518	Open in IMG/M
3300025928\|Ga0207700_10235701	All Organisms → cellular organisms → Bacteria	1558	Open in IMG/M
3300025930\|Ga0207701_11097197	Not Available	660	Open in IMG/M
3300025940\|Ga0207691_10778184	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300025942\|Ga0207689_10711207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	847	Open in IMG/M
3300025960\|Ga0207651_10160593	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1761	Open in IMG/M
3300025961\|Ga0207712_11435487	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300026088\|Ga0207641_12416407	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300026116\|Ga0207674_11264801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	707	Open in IMG/M
3300027462\|Ga0210000_1041707	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300027573\|Ga0208454_1126543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	598	Open in IMG/M
3300027853\|Ga0209274_10407404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	702	Open in IMG/M
3300028379\|Ga0268266_11050450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	788	Open in IMG/M
3300028380\|Ga0268265_10499534	Not Available	1146	Open in IMG/M
3300028380\|Ga0268265_10932324	Not Available	854	Open in IMG/M
3300028380\|Ga0268265_12510475	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300028786\|Ga0307517_10633285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	522	Open in IMG/M
3300028794\|Ga0307515_10383097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	1038	Open in IMG/M
3300031547\|Ga0310887_10281302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	940	Open in IMG/M
3300031708\|Ga0310686_116978903	Not Available	1041	Open in IMG/M
3300031820\|Ga0307473_11340579	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300031847\|Ga0310907_10121792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1159	Open in IMG/M
3300031858\|Ga0310892_10288220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1030	Open in IMG/M
3300031908\|Ga0310900_10791743	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300031912\|Ga0306921_11638146	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300031954\|Ga0306926_12823661	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300032012\|Ga0310902_10866990	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300032013\|Ga0310906_10650376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	731	Open in IMG/M
3300032060\|Ga0318505_10180133	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300032094\|Ga0318540_10253015	Not Available	850	Open in IMG/M
3300032144\|Ga0315910_11224659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	586	Open in IMG/M
3300032157\|Ga0315912_11256378	Not Available	586	Open in IMG/M
3300032205\|Ga0307472_102519678	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300032261\|Ga0306920_101973076	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	818	Open in IMG/M
3300032782\|Ga0335082_10575850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	987	Open in IMG/M
3300032955\|Ga0335076_11171551	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300033291\|Ga0307417_10348012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	558	Open in IMG/M
3300033433\|Ga0326726_10732297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	955	Open in IMG/M
3300034417\|Ga0364941_071884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	803	Open in IMG/M
3300034662\|Ga0314783_099283	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	619	Open in IMG/M
3300034678\|Ga0314803_122632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	61.03%
Host-Associated	Host-Associated	38.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.21%
Plants	Host-Associated → Plants	38.97%
Aquatic	Environmental → Aquatic	8.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.12%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.91%
Sediment	Environmental → Aquatic → Sediment	5.15%
Roots	Host-Associated → Plants → Roots	2.94%
Marine	Environmental → Aquatic → Marine	2.21%
Freshwater	Environmental → Aquatic → Freshwater	1.47%
Peat	Environmental → Terrestrial → Peat	0.74%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.74%
Floodplain	Environmental → Terrestrial → Floodplain	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.50%
Loam	Environmental → Terrestrial → Soil → Loam	10.29%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.15%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.68%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.21%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.47%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.47%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.47%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.74%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.74%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.74%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.74%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.12%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.35%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.62%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.15%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.21%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.47%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.47%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.47%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.47%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.74%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.74%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.74%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.74%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.74%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.88%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.15%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.15%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.15%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.41%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.21%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.21%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.21%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.21%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.21%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.47%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.47%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.47%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.47%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.47%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.47%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	1.47%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.74%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.74%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.74%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil	0.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.74%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.74%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.74%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.74%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.74%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.74%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.74%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.74%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.74%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001977	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5	Host-Associated	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004780	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare1Fresh	Environmental	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009095	Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2015	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300012129	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT530_2	Environmental	Open in IMG/M
3300012172	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT366_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012227	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT436_2	Environmental	Open in IMG/M
3300012228	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012511	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10	Environmental	Open in IMG/M
3300012512	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510	Host-Associated	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017655	Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 5th pass 30_C BE-Lig BY (version 2)	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300023260	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S197-509C-6	Environmental	Open in IMG/M
3300023268	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L106-311C-6	Environmental	Open in IMG/M
3300025580	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025664	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027462	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes)	Host-Associated	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028786	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM	Host-Associated	Open in IMG/M
3300028794	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM	Host-Associated	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033291	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-10	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M
3300034662	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034678	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_04158662	2228664021	Soil	DPIHHAILRVSDIVAAVAAAKAAGAKVERDVMTAPIGGTPIKIAMLVDPDGNALELMELPKTLTHLPH
JGI24746J21847_10014423	3300001977	Corn, Switchgrass And Miscanthus Rhizosphere	VAAAKAAGAKVDRDVATVTIGGASIKIAMLVDPQGNALEIMELPKALTHLPH*
Ga0062590_1021687541	3300004157	Soil	AAKAAGAKVERDVMTAPIGGTPIKIAMLIDPDGNALELMELPTTLTHLPH*
Ga0062378_102217582	3300004780	Wetland Sediment	HAIFQVLDVAATVSAVKAAGGTVRGDVVSAPIGNITVKIATAIDPDGNVLELMELPKGVNHLPHP*
Ga0068993_101094203	3300005183	Natural And Restored Wetlands	DVGATVAAAKAAGATMKGDVASVPIGGMPVKIATLVDPDGNVLELMELPKGVDHLPHP*
Ga0065715_102033981	3300005293	Miscanthus Rhizosphere	VAAAKAAGATVDRDVATVSIGGAPIKIAMLVDPQGNALEIMELPKSLTHLPH*
Ga0070676_100418654	3300005328	Miscanthus Rhizosphere	MNWLDIAATVAAAKAAGAKVDRNVVTVSIGGAPIQIAMLVDPQGNALEIMELPKAFTHRPH*
Ga0070677_105997881	3300005333	Miscanthus Rhizosphere	AGAKVERDVMTAPIGGTPIKIAMLVDPDGNALELMELPKTLTHLPH*
Ga0070689_1014467171	3300005340	Switchgrass Rhizosphere	VSDIAATVAAAKAAGAKVNREVSTVTIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH*
Ga0070669_1006168323	3300005353	Switchgrass Rhizosphere	ASVAAAKAAGAKVDRDVASVPIGGTPIKIAMLTDPDGNALGLMELPPTLTHLPH*
Ga0070671_1017082532	3300005355	Switchgrass Rhizosphere	VAAAKAAGAKVDRDVASVPIGGTPIKIAMLTDPDGNALELMELPTNLTHLPH*
Ga0070667_1002686441	3300005367	Switchgrass Rhizosphere	ILRVSDIKASVAAAKAAGAKVDRDVASVPIGGTPIKIAMLTDPDGNALELMELPTNLTHLPH*
Ga0070667_1004094461	3300005367	Switchgrass Rhizosphere	VATVAAAKAAGATVKTDVASVPIGNIMVKLATLTDPDGNVLELMELPKGADTLRHP*
Ga0070713_1006691031	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	AGATVDRNVSTVSIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH*
Ga0070713_1020429671	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	EPGSAPDSMPHAIFHVSDMNATLAAAKAGGATMKGEVASVSIGGMPLKVAMLVDPDGNVLEIMELPKGVSHLKHP*
Ga0070694_1006707911	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	DIAATVAAAKGAGAKVQAEVATVQIGGAPIKIATVVDPDGNVLELMELPKGTDHLPHP*
Ga0070678_1005082242	3300005456	Miscanthus Rhizosphere	ANDPMHHAIFRVSDIAATVAAAKAAGAKVDRDVSTVSIGGTPIKIAMIVDPQGNALEIMELPKTLTHLPH*
Ga0070679_1017394411	3300005530	Corn Rhizosphere	TATNDPMPHAVFHVSDMNATLAAAKAGGATMKGDVASVSIGGMSLKVAMVVDPDGNVLELMELPKGVSHLKHP*
Ga0070684_1003344223	3300005535	Corn Rhizosphere	RDPTATNDPMPHAVFHVSDMNATLAAAKAGGATMKGDVASVSIGGMSLKVAMVVDPDGNVLELMELPKGVSHLKHP*
Ga0070731_109764591	3300005538	Surface Soil	VSDLGATVAAAKAAGATMKTDVASVKIGSMPVKVAMLVDPDGNVLEVMELPKDVDHLRHP
Ga0070672_1007976431	3300005543	Miscanthus Rhizosphere	VAAAKAAGAKVNREVSTVTIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH*
Ga0070695_1010030851	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	AGATVDRDVMTAPIGGSPIKIAMLVDPDGNALELMELPKTLTHLPH*
Ga0070704_1015787812	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VSDIAATVAAAKAAGAKVDRDVATVSIGGAPIKIAMLVDPQGNALEIMELPKALTHLPH*
Ga0070761_105477593	3300005591	Soil	DIGASVAAAKAAGATMKREVASVPIGGMPVKVATLVDPDGNVLELMELPKGVGHLRHP*
Ga0068866_109951181	3300005718	Miscanthus Rhizosphere	VSAAKAAGATMRGEVATAPIGGIQVKIATLVDPDGNVLELMELPKGHDHLPHP*
Ga0066903_1015042102	3300005764	Tropical Forest Soil	RTSVAAARAAGAKVERDVMTASIGGAPIEIAMLVDPDGNALELMELPATLTHLPH*
Ga0066903_1084715252	3300005764	Tropical Forest Soil	DIVATVAAAKAAGATVDRDVSTVSIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH*
Ga0068870_110808272	3300005840	Miscanthus Rhizosphere	AAKDPIHHAILRVSDIVASVAAAKVAGATVERDVMTAPIGGTPIKIAMLVDPDGNALELMELPKTLTHLPH*
Ga0068858_1001486061	3300005842	Switchgrass Rhizosphere	KAAGAKVDRNVVTVSIGGAPIQIAMLVDPQGNALEIMELRKAFTHRPH*
Ga0068862_1016598911	3300005844	Switchgrass Rhizosphere	RASVAAAKAAGAKVDRDVMTAPIGGTPIKIAMLTDPDGNALELMELPTTLTHLPH*
Ga0068862_1020856812	3300005844	Switchgrass Rhizosphere	AATVAAAKAAGAKVDRDVSTVSIGGSPIKIAMLVDPQGNALEIMELPKTLTHLPH*
Ga0075427_100639691	3300006194	Populus Rhizosphere	SDIAATVAAAKAAGAKVDRDVATVSIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH*
Ga0075431_1004804741	3300006847	Populus Rhizosphere	AILRVSDIRASVAAAKAAGAKVERDVMTAPIGGTPIKIAMLVDPDGNALELMELPPTLTHLPH*
Ga0075420_1009524072	3300006853	Populus Rhizosphere	IRASVAAAKAAGAKVERDVMTVPIGGTPIKIAMLVDPDGNALELMELPATLTHLPH*
Ga0068865_1002632492	3300006881	Miscanthus Rhizosphere	MNWLDIAATVAAAKAAGAKVDRNVVTVSIGGAPIQIAMLVDPQGNALEIMELRKAFTHRPH*
Ga0079215_102234431	3300006894	Agricultural Soil	VSDIAATIAAAKAAGATINGEVATVPIGGMPVKIAMLVDPDGNVLELMELPKGATKLPHP
Ga0079219_110333332	3300006954	Agricultural Soil	KKAGATMKGDVASASIGGMPVKIATMVDPDGNVLEVMELAKGADKLPHP*
Ga0079218_122742802	3300007004	Agricultural Soil	AADGQMAHAIFQVSDVAGTVAAAKGAGASVRGEIASVPIGNIQVKIATVVDPDGNVLELMELPKGVDHLPHP*
Ga0105106_106008822	3300009078	Freshwater Sediment	AAAKAAGATMDGDVVTVPIGGAPIKIAMLVDPDGNALELMELPKGVDHLPH*
Ga0079224_1006754682	3300009095	Agricultural Soil	SDLAASVEAAKAAGATMDRDVATVAIGGTPIKIAFLVDPDGNSIELMELPANLKALPH*
Ga0105247_101939371	3300009101	Switchgrass Rhizosphere	IAATVAAAKAAGATVDRDVATVSIGGAPIKIAMLVDPQGNALEIMELPKALTHLPH*
Ga0105241_106985722	3300009174	Corn Rhizosphere	SATLAAAKAAGATVKGNVASVSIGTTAVKVTTLVDPDGNVLELMELPKGVDHLRHP*
Ga0105242_122070361	3300009176	Miscanthus Rhizosphere	VAAAKAAGATVDRDVATVSIGGAPIKIAMLVDPQGNALELMELPK
Ga0105237_100845292	3300009545	Corn Rhizosphere	MNATLAAAKAGGATMKGDVASVSIGGMSLKVAMVVDPDGNVLELMELPKGVSHLKHP*
Ga0105249_121473131	3300009553	Switchgrass Rhizosphere	AIFRVSDIAATVAAAKAAGAKVNREVSTVTIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH*
Ga0126384_114176512	3300010046	Tropical Forest Soil	AILRVSDIVATVAAAKAAGATVDRDVSTVSIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH*
Ga0126382_123425221	3300010047	Tropical Forest Soil	AGATMKGNVASAKIGNMSVKVAQLVDPEGNVLELMELPKGANHLQHL*
Ga0126376_114395452	3300010359	Tropical Forest Soil	ILRVSDIVATVAAAKAAGATVDRDVSTVTIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH*
Ga0105239_101555101	3300010375	Corn Rhizosphere	IFHVSDINATVAAAKAAGAKMKGEVASVPIGGTPIKIAQMTDPDGNALEIMELPKGTDHLPHP*
Ga0126381_1000334876	3300010376	Tropical Forest Soil	DMGATVGAAKAAGATMKGDVASVSIGDTPVKVATLVDPDGNVLELMELPKDVSHLPHP*
Ga0126383_128583752	3300010398	Tropical Forest Soil	FHVSDINATVAAAKAAGATMKGEVATVKIGGAPIKIAEMTDPDGNVLEAMELPQGPDHLPH*
Ga0134127_108291822	3300010399	Terrestrial Soil	TAAKAAGAKMQGEVATAPIGGIQVKIGTIVDPDGNVLELMELPKGHDHLPHP*
Ga0134122_107562483	3300010400	Terrestrial Soil	KAAGATVERDVMTAPIGGTPIKIAMLIDPDGNALELMELPTTLTHLPH*
Ga0134122_110557983	3300010400	Terrestrial Soil	DPMAHAIFRVSDVAATVAAAKSAGATMKGEVASIQIGKMPVKIAQMVDPDGNTLEIMELPKGLDHLKHP*
Ga0134121_118228812	3300010401	Terrestrial Soil	PEFLLARREPGAANDSIPHAIFHVSDISATIAAAKSAGATMKGEIVSITIGKMPVKVAQLVDPDGNALELMELPKGADHIQHP*
Ga0137443_10637131	3300011433	Soil	VAAAKAAGASMQGDVVTVPIGGMPVKIATLVDPQGNVLELMELPKGATHLPHP*
Ga0137345_10431652	3300012129	Soil	MAHAIFHVSDIAATVAAAKAAGASMEGDVVTVPIGGAPIKIATVVDPQGNVLELMELPKGLDHLPHP*
Ga0137320_11363731	3300012172	Soil	KDPMHHAIFKVSDIAATVAAAKAAGATLEGDVVTVPIGGAPIKIAMLVDPDGNALEIMELPKGVDHLPH*
Ga0150985_1022793031	3300012212	Avena Fatua Rhizosphere	TVAAAKAAGARVDRDVSTASIGGKPIKIAMLVDPQGNALEIMELPAELTHLPH*
Ga0137449_11436181	3300012227	Soil	HAIFRVSDIAATVAAAKAAGATMEGEVVTVPIGGTPIKIGMLVDPDGNALEIMELPKGVSHLPH*
Ga0137459_10646772	3300012228	Soil	VSAAKAAGAKMEGEVVTVPIGGMPVKIATMTDPDGNVLELMELAKGATHLPHP*
Ga0137435_10798521	3300012232	Soil	KVSDIAATVAAAKAAGATLEGDVVTVPIGGAPIKIAMLVDPDGNALELMELPKGVDHLPH
Ga0157332_10784672	3300012511	Soil	DSMHHAIFRVSDIVATVAAAKAAGATVDRDVATVSIGGAPIKIAMLVDPQGNALEIMELPKSLTHLPH*
Ga0157327_10090501	3300012512	Arabidopsis Rhizosphere	AATVAAAKAAGGTVDRDVSTVTIGGAPIKIAMLVDPQGNALEIMELPKALTHLPH*
Ga0157299_100613312	3300012899	Soil	AAAKAAGASVRGEIGSAPIGNIQVKIATVVDPDGNVLELMELPKGVDHLPHP*
Ga0157283_101145232	3300012907	Soil	VAAAKAAGAKVDRDVATVSIGGAPIKIAMLVDPQGNALEIMELPKALTHLPH*
Ga0137410_109963571	3300012944	Vadose Zone Soil	AAAKKAGATMKGDVASVQIGKMSVKVAQLVDPDGNVLELMELPKGADHLQHP*
Ga0126375_102227663	3300012948	Tropical Forest Soil	VSDIAATVAAAKAAGATVDRDVSTVSIGGAPIKIAMLVDPQGNALEIMELPKGLTHLPH*
Ga0164307_114445381	3300012987	Soil	LTRSEPGTAADTMAHAIFHVSDMNATLATAKTAGATMKGNVASVKIGSMSVKVAQLVDPDGNVLELMELPKGADTLRHP*
Ga0157371_109901611	3300013102	Corn Rhizosphere	KAAGAKVDRDVATVTIGGAPIKIAMLVDPQGNALEIMELPKALTHLPH*
Ga0163162_109660431	3300013306	Switchgrass Rhizosphere	AAKAAGAKVDRNVVTVSIGGAPIQIAMLVDPQGNALEIMELRKAFTHRPH*
Ga0134078_106108742	3300014157	Grasslands Soil	AAGATMKGDVASATIGGMPVKIATMVDPDGNVLEIMELAKGANKLPHP*
Ga0163163_101731853	3300014325	Switchgrass Rhizosphere	ATVAAAKAAGAKVDRDVSTVSIGGSPIKIAMLVDPQGNALEIMELPKALTHLPH*
Ga0163163_129386771	3300014325	Switchgrass Rhizosphere	ATVAAAKAAGARVDRDVTTVSIGGAPIKIAMVVDPQGNALEIMELPKELTHLPH*
Ga0173478_105180403	3300015201	Soil	ASVAAAKAAGAKVERDVMTAPIGGTPIKIAMLIDPDGNALELMELPTTLTHLQH*
Ga0132258_102067941	3300015371	Arabidopsis Rhizosphere	IFRVPDVAATVAAAKAAGAKISRDVSTVTIGGSPIKIATLVDPQGNALEIMELPKALTHLPH*
Ga0132257_1030055331	3300015373	Arabidopsis Rhizosphere	AGAKVERDVMTVPIGGAPIKIAMLVDPDGNALELMELPATLTHLPH*
Ga0132255_1028736602	3300015374	Arabidopsis Rhizosphere	MHHAIFRISDIAATVAAAKPRCRDVATVSIGGAPIKIAMLVDPQGNALEIMELPKALTHLPN*
Ga0182034_106483672	3300016371	Soil	AAAKAAGATVDRDVSTVTIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH
Ga0182037_120628501	3300016404	Soil	RREPGAANDQIPHAIFHVSDIGAIVAAAKAAGATVKGDVASVPIGGIPIKLVTLVDPDGNVLEVMELPKGLDHLKHP
Ga0182739_10303664	3300017655	Soil	AATVAAAKAAGAKMEGDVATVPIGGTPIKIAMLVDPDGNALEIMELPKDLTHLPH
Ga0187766_105953072	3300018058	Tropical Peatland	AANDPMHHAILRVSDIVATVAAAKAAGATVDRDVSTVSIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH
Ga0190272_127637112	3300018429	Soil	VAAAKAAGATVKGDVVSVPIGNIMVKIATLVDPDGNVLELMELPKGIDHLPHP
Ga0190275_108109561	3300018432	Soil	HAIFHVSDIAATVAAAKAAGASMEGEVVSVPIGGMPVKIANLVDPDGNVLELMELPKGVDHLPHP
Ga0173482_105418721	3300019361	Soil	ATVAAAKAAGASVRGEIGSAPIGNIQVKIATVVDPDGNVLELMELPKGVDHLPHP
Ga0247798_10561681	3300023260	Soil	RASVAAAKAAGAKVERDVVTVPIGGTPIKIAMLVDPDGNALELMELPPTLTHLPH
Ga0247765_10505381	3300023268	Plant Litter	AIFHVSDVDATIAAAKGAGATMKGNVASIKIGSMPVKVAQLTDPEGNVLELMELPKGASHIQHP
Ga0210138_10602972	3300025580	Natural And Restored Wetlands	DVGATVAAAKAAGATMKGDVASVPIGGMPVKIATLVDPDGNVLELMELPKGVDHLPHP
Ga0208849_10861612	3300025664	Arctic Peat Soil	VAAAKAAGATIKTDVASVTIGAMKLKIATLADPDGNVLELMQLPKGANHIQHP
Ga0207680_105126731	3300025903	Switchgrass Rhizosphere	RVSDIAATVAAAKAAGAKVDRDVSTVSIGGSPIKIAMLVDPQGNALEIMELPKALTHLPH
Ga0207645_100844352	3300025907	Miscanthus Rhizosphere	MNWLDIAATVAAAKAAGAKVDRNVVTVSIGGAPIQIAMLVDPQGNALEIMELRKAFTHRP
Ga0207643_102891061	3300025908	Miscanthus Rhizosphere	MNWLDIAATVAAAKAAGAKVDRDVATVSIGGAPIKIAMLVDPQGNALEIMELPKTLTHLP
Ga0207671_112282721	3300025914	Corn Rhizosphere	DMNATLAAAKAGGATMKGDVASVSIGGMSLKVAMVVDPDGNVLELMELPKGVSHLKHP
Ga0207660_103931191	3300025917	Corn Rhizosphere	SDPIPHAVLHVSDMGATLAAAKAAGATMKGEVASVSIGSTPVKVATLVDPDGNVLELMELPKGVGHLRHP
Ga0207657_111490541	3300025919	Corn Rhizosphere	AKAAGAKVDRDVATVSIGGAPIKIAMLVDPQGNALEIMELPKALTHLPH
Ga0207659_118161962	3300025926	Miscanthus Rhizosphere	EATAASDPIHHAILRVSDIRASVAAAKAAGAKVERDVMTAPIGGASIKIAMLIDPDGNALELMELPTTLTHLPH
Ga0207700_102357013	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	AAPDSMPHAIFHVSDMNATLAAAKAGGATMKGEVASVTIGGMPLKVAMLVDPDGNVLEVMELPKGVSHLRHP
Ga0207701_110971971	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	DSMHHAIFRVSDIVATVAAAKAAGATVDRDVATVSIGGAPIKIAMLVDPQGNALEIMELPKSLTHLPH
Ga0207691_107781841	3300025940	Miscanthus Rhizosphere	LRVSDITASVAAAKAAGAKVERDVMTVPIGGAPIKIAMLVDPDGNALELMELPATLTHLP
Ga0207689_107112071	3300025942	Miscanthus Rhizosphere	AKSAGAKMKGEVASLKIGKMPVKIAQLTDPDGNVLELMELPKDADHIQHP
Ga0207651_101605931	3300025960	Switchgrass Rhizosphere	AAAKAAGAKVDRDVASVPIGGTPIKIAMLTDPDGNALELMELPTNLTHLPH
Ga0207712_114354871	3300025961	Switchgrass Rhizosphere	KAAGASVRGEIGSAPIGNIQVKIATVVDPDGNVLELMELPKGVDHLPHP
Ga0207641_124164072	3300026088	Switchgrass Rhizosphere	LDATVAAARKAGGTLKGDVAAVKIGNMSLRLAMVIDPDGNVLELMELPKGADHLQHL
Ga0207674_112648013	3300026116	Corn Rhizosphere	LAAAKTAGATMKGNVASVKIGTMAVKVAQLVDPEGNVLELMELPKGADTLRHP
Ga0210000_10417071	3300027462	Arabidopsis Thaliana Rhizosphere	DIAATVAAAKAAGAKVDRDVATVTIGGAPIKIAMLVDPQGNALEIMELPKALTHLPH
Ga0208454_11265432	3300027573	Soil	IFRVTDIAASVAAAKAAGAKVATDTVEVPIGGVPVKVAMLNDPDGNVIELMELPKELAALKHP
Ga0209274_104074041	3300027853	Soil	PIMHAVFRVSDIAAAVLAAKTAGATIKSDVASITIGGMSLKSATLVDPDGNVLEIMELPKGVTHLRHP
Ga0268266_110504501	3300028379	Switchgrass Rhizosphere	NDHAIFRVSDIAATVAAAKAAGAKVDRDVATVSIGGAPIKIAMLVDPQGNALEIMELPKGLTHLPH
Ga0268265_104995341	3300028380	Switchgrass Rhizosphere	FRVSDIAATVAAAKAAGAKVDRDVSTVSIGGSPIKIAMLVDPQGNALEIMELPKTLTHLP
Ga0268265_109323244	3300028380	Switchgrass Rhizosphere	VAAAKAAGATVERDVMTAPIGGTPIKIAMLVDPDGNALELMELPTTLTHLPH
Ga0268265_125104751	3300028380	Switchgrass Rhizosphere	AGAATDSMPHAIFHVADLGATVAAAKGAGATMKGEVASVQIGKMAVKIAQLVDPDGNVLELMELPKGTDHIQHP
Ga0307517_106332851	3300028786	Ectomycorrhiza	GAATDSMAHAIFHVSDVEAAIAAAKSAGATMKGNVASVKIGSMPVKVAQLTDPDGNALELMELPKGANHLQHP
Ga0307515_103830971	3300028794	Ectomycorrhiza	GATVTAAKSAGATMKGDVASVQIGSMSVKVAQLVDPDGNVLELMELPKGADHLRHP
Ga0310887_102813021	3300031547	Soil	ILRVSDIRASVAAAKAAGATVERDVMTAPIGGTPIKIAMLVDPDGNALELMELPPTLTHLPH
Ga0310686_1169789032	3300031708	Soil	AKAAGATTKSDVASVSIGGMSLKSATLVDPYGNVVELMELPKGVGHLKHP
Ga0307473_113405792	3300031820	Hardwood Forest Soil	MHHAILRVSDIVATVAAAKAAGATVDRDVSTVSIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH
Ga0310907_101217922	3300031847	Soil	VAAAKAAGATVERDVMTAPIGGTPIKIAMLVDPDGNALELMELPPTLTHLPH
Ga0310892_102882202	3300031858	Soil	IKASVAAAKTAGATVDRDVASVPIGGTPIKIAMLTDPDGNALELMELPPTLTHLPH
Ga0310900_107917431	3300031908	Soil	AAGAKVDRDVATVPIGGAPIKIAMLVDPQGNALEIMELPKGLMHLPH
Ga0306921_116381462	3300031912	Soil	VAAAKAAGATVERDIATVSIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH
Ga0306926_128236611	3300031954	Soil	LLQSREPGAANDPIPHAVFHVSDMGATIAAAKAAGATMKGDVASVSIGATPVKVATLVDPDGNVLELMELPKGVDHLQHP
Ga0310902_108669902	3300032012	Soil	AATVAAAKAAGAKVDRDVATVKIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH
Ga0310906_106503762	3300032013	Soil	CERPNDHAIFRVSDIAATVAAAKAAGAKVDRDVATVSIGGAPIKIAMLVDPQGNALEIMELPKGLTHLPH
Ga0318505_101801333	3300032060	Soil	IPHAIFHVSDIGAIVAAAKAAGATVKGDVASVPIGGIPIKLVTLVDPDGNVLEVMELPKGLDHLKHP
Ga0318540_102530152	3300032094	Soil	DIGAIVAAAKAAGATVKGDVASVPIGGIPIKLVTLVDPDGNVLEVMELPKGLDHLKHP
Ga0315910_112246591	3300032144	Soil	KAAGATVERDVMTAPIGGTPIKIAMLIDPDGNALELMELPTTLTHLPH
Ga0315912_112563782	3300032157	Soil	TVAAAKAAGAKVDRDVATVSIGGSPIKIAMLVDPQGNALEIMELPKALKQLPH
Ga0307472_1025196782	3300032205	Hardwood Forest Soil	AAKAAGATVDRDVSTVSIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH
Ga0306920_1019730761	3300032261	Soil	AKAAGATVDRDVSTVSIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH
Ga0335082_105758502	3300032782	Soil	VAAAKAAGATIKSNVASIAIGGMPVKIATLTDPDGNVLELMELPKGVTHLRHP
Ga0335076_111715512	3300032955	Soil	SDINATVAAAKAAGATMKGEVASVSIGGTPIKIATMTDPDGNVLEVMELPKGTDHLPH
Ga0307417_103480121	3300033291	Salt Marsh	PEFLVALRESGIGKDSMAHAIFRVSDLAATVATAKAAGATMDGDIATVPIGGMPVKIASMMDPQGNALEIMELPAGAEHLPHP
Ga0326726_107322971	3300033433	Peat Soil	DVGATVAAAKAAGATMKGDVASVPIGGMPVKIATMVDPDGNVIEIMELPKGVDHLQHP
Ga0364941_071884_2_142	3300034417	Sediment	AGATVERDVMTAPIGGTPIKIAMLVDPDGNALELMELPTTLTHLPH
Ga0314783_099283_388_591	3300034662	Soil	MAHAIFRVSDLAATLTAAKAAGAKMQGEVATAPIGGIQVKIGTIVDPDGNVLELMELPKGHDHLPHP
Ga0314803_122632_312_470	3300034678	Soil	VATAKAAGAKVDRDVATVSIGGAPIKIAMLVDPQGNALEIMELPKTLTHLPH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F057501

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences