Metagenome / Metatranscriptome Family F057490

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F057490
Family Type	Metagenome / Metatranscriptome
Number of Sequences	136
Average Sequence Length	45 residues
Representative Sequence	MTTPSRNTVGVYDRPHPLRTRKVLVPVLVAVVVAIVYAVWWYLA
Number of Associated Samples	100
Number of Associated Scaffolds	136

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.03 %
% of genes near scaffold ends (potentially truncated)	27.21 %
% of genes from short scaffolds (< 2000 bps)	84.56 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.118 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.294 % of family members)
Environment Ontology (ENVO)	Unclassified (55.147 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (65.441 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.67% β-sheet: 0.00% Coil/Unstructured: 58.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 136 Family Scaffolds
PF02852	Pyr_redox_dim	41.91
PF07992	Pyr_redox_2	13.24
PF06897	DUF1269	5.88
PF03401	TctC	2.94
PF08534	Redoxin	2.94
PF08240	ADH_N	0.74
PF00005	ABC_tran	0.74
PF03358	FMN_red	0.74
PF00563	EAL	0.74
PF00462	Glutaredoxin	0.74

COG ID	Name	Functional Category	% Frequency in 136 Family Scaffolds
COG4803	Uncharacterized membrane protein	Function unknown [S]	5.88
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.94
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.74
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.74
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.74
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.12 %
Unclassified	root	N/A	5.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.12 %
Unclassified	root	N/A	5.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.12 %
Unclassified	root	N/A	5.88 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	86.03 %
Unclassified	root	N/A	5.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.74 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	23.53 %
Unclassified	root	N/A	5.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.94 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.74 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.74 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	21.32 %
Unclassified	root	N/A	5.88 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	2.94 %
Ardenticatenia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ardenticatenia	0.74 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.74 %

Name	Rank	Taxonomy	Distribution
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	16.18 %
Unclassified	root	N/A	5.88 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	2.94 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	2.21 %
Ardenticatenales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ardenticatenia → Ardenticatenales	0.74 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.74 %

Name	Rank	Taxonomy	Distribution
unclassified Burkholderiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae	16.18 %
Unclassified	root	N/A	5.88 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2.94 %
Bordetella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Bordetella	0.74 %
unclassified Ardenticatenales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ardenticatenia → Ardenticatenales → unclassified Ardenticatenales	0.74 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.74 %

Name	Rank	Taxonomy	Distribution
Burkholderiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	16.18 %
Unclassified	root	N/A	5.88 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2.94 %
Ardenticatenales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ardenticatenia → Ardenticatenales → unclassified Ardenticatenales → Ardenticatenales bacterium	0.74 %
Bordetella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Bordetella	0.74 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.74 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886012\|MBSR1b_contig_8014482	All Organisms → cellular organisms → Bacteria → Proteobacteria	1240	Open in IMG/M
2199352024\|deeps__Contig_179088	All Organisms → cellular organisms → Bacteria → Proteobacteria	2387	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c2082336	All Organisms → cellular organisms → Bacteria → Proteobacteria	714	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13526320	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300003321\|soilH1_10183849	All Organisms → cellular organisms → Bacteria → Proteobacteria	1131	Open in IMG/M
3300003324\|soilH2_10265359	All Organisms → cellular organisms → Bacteria → Proteobacteria	1337	Open in IMG/M
3300003324\|soilH2_10403897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	1004	Open in IMG/M
3300004114\|Ga0062593_100688710	All Organisms → cellular organisms → Bacteria → Proteobacteria	994	Open in IMG/M
3300004114\|Ga0062593_103430329	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300004157\|Ga0062590_102881792	All Organisms → cellular organisms → Bacteria → Proteobacteria	514	Open in IMG/M
3300005327\|Ga0070658_10031775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4241	Open in IMG/M
3300005327\|Ga0070658_10253557	All Organisms → cellular organisms → Bacteria → Proteobacteria	1493	Open in IMG/M
3300005327\|Ga0070658_10330736	All Organisms → cellular organisms → Bacteria → Proteobacteria	1302	Open in IMG/M
3300005328\|Ga0070676_10300000	All Organisms → cellular organisms → Bacteria → Proteobacteria	1089	Open in IMG/M
3300005328\|Ga0070676_10644570	All Organisms → cellular organisms → Bacteria → Proteobacteria	768	Open in IMG/M
3300005330\|Ga0070690_100229933	All Organisms → cellular organisms → Bacteria → Proteobacteria	1303	Open in IMG/M
3300005331\|Ga0070670_100055773	All Organisms → cellular organisms → Bacteria → Proteobacteria	3391	Open in IMG/M
3300005331\|Ga0070670_100112421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2347	Open in IMG/M
3300005335\|Ga0070666_10212089	All Organisms → cellular organisms → Bacteria → Proteobacteria	1364	Open in IMG/M
3300005335\|Ga0070666_10498884	All Organisms → cellular organisms → Bacteria → Proteobacteria	882	Open in IMG/M
3300005338\|Ga0068868_101150202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	716	Open in IMG/M
3300005338\|Ga0068868_101425785	All Organisms → cellular organisms → Bacteria → Proteobacteria	646	Open in IMG/M
3300005338\|Ga0068868_101708985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	593	Open in IMG/M
3300005338\|Ga0068868_101930483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	559	Open in IMG/M
3300005344\|Ga0070661_101174623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	641	Open in IMG/M
3300005345\|Ga0070692_10761489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	657	Open in IMG/M
3300005364\|Ga0070673_100329170	All Organisms → cellular organisms → Bacteria → Proteobacteria	1351	Open in IMG/M
3300005366\|Ga0070659_100308197	All Organisms → cellular organisms → Bacteria → Proteobacteria	1322	Open in IMG/M
3300005366\|Ga0070659_100459361	All Organisms → cellular organisms → Bacteria → Proteobacteria	1081	Open in IMG/M
3300005435\|Ga0070714_100117927	All Organisms → cellular organisms → Bacteria → Proteobacteria	2358	Open in IMG/M
3300005439\|Ga0070711_100298577	All Organisms → cellular organisms → Bacteria → Proteobacteria	1280	Open in IMG/M
3300005457\|Ga0070662_101300209	All Organisms → cellular organisms → Bacteria → Proteobacteria	626	Open in IMG/M
3300005458\|Ga0070681_11320332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	644	Open in IMG/M
3300005459\|Ga0068867_102013142	All Organisms → cellular organisms → Bacteria → Proteobacteria	546	Open in IMG/M
3300005546\|Ga0070696_101016468	All Organisms → cellular organisms → Bacteria → Proteobacteria	693	Open in IMG/M
3300005563\|Ga0068855_100033885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	6092	Open in IMG/M
3300005618\|Ga0068864_100943715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	853	Open in IMG/M
3300005840\|Ga0068870_10447834	All Organisms → cellular organisms → Bacteria → Proteobacteria	850	Open in IMG/M
3300005903\|Ga0075279_10024401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	895	Open in IMG/M
3300006196\|Ga0075422_10206358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	810	Open in IMG/M
3300006237\|Ga0097621_100258054	All Organisms → cellular organisms → Bacteria → Proteobacteria	1528	Open in IMG/M
3300006237\|Ga0097621_101093483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Bordetella	748	Open in IMG/M
3300006755\|Ga0079222_10037008	All Organisms → cellular organisms → Bacteria → Proteobacteria	2149	Open in IMG/M
3300009177\|Ga0105248_12462166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	593	Open in IMG/M
3300009545\|Ga0105237_10805003	Not Available	946	Open in IMG/M
3300010373\|Ga0134128_10084352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3624	Open in IMG/M
3300010400\|Ga0134122_10217523	All Organisms → cellular organisms → Bacteria → Proteobacteria	1594	Open in IMG/M
3300010401\|Ga0134121_11792432	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300012212\|Ga0150985_110228533	All Organisms → cellular organisms → Bacteria → Proteobacteria	1237	Open in IMG/M
3300012212\|Ga0150985_114530505	All Organisms → cellular organisms → Bacteria → Proteobacteria	1021	Open in IMG/M
3300012212\|Ga0150985_119736932	All Organisms → cellular organisms → Bacteria → Proteobacteria	1957	Open in IMG/M
3300012212\|Ga0150985_121637557	All Organisms → cellular organisms → Bacteria → Proteobacteria	1614	Open in IMG/M
3300012469\|Ga0150984_101448899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	1201	Open in IMG/M
3300012469\|Ga0150984_104563811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	515	Open in IMG/M
3300012469\|Ga0150984_112487139	All Organisms → cellular organisms → Bacteria → Proteobacteria	647	Open in IMG/M
3300012469\|Ga0150984_120814313	All Organisms → cellular organisms → Bacteria → Proteobacteria	952	Open in IMG/M
3300012911\|Ga0157301_10099119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	853	Open in IMG/M
3300012955\|Ga0164298_11645047	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300012957\|Ga0164303_10619559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	716	Open in IMG/M
3300012986\|Ga0164304_10083237	All Organisms → cellular organisms → Bacteria → Proteobacteria	1857	Open in IMG/M
3300012988\|Ga0164306_10333044	All Organisms → cellular organisms → Bacteria → Proteobacteria	1119	Open in IMG/M
3300012989\|Ga0164305_11038917	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300012989\|Ga0164305_11501141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	598	Open in IMG/M
3300013100\|Ga0157373_10008739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7506	Open in IMG/M
3300013102\|Ga0157371_10748736	All Organisms → cellular organisms → Bacteria → Proteobacteria	734	Open in IMG/M
3300013104\|Ga0157370_10077890	All Organisms → cellular organisms → Bacteria → Proteobacteria	3122	Open in IMG/M
3300013104\|Ga0157370_10140922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2246	Open in IMG/M
3300013104\|Ga0157370_10363674	All Organisms → cellular organisms → Bacteria → Proteobacteria	1333	Open in IMG/M
3300013105\|Ga0157369_10040094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5115	Open in IMG/M
3300013105\|Ga0157369_11141472	Not Available	796	Open in IMG/M
3300013307\|Ga0157372_10194112	All Organisms → cellular organisms → Bacteria → Proteobacteria	2352	Open in IMG/M
3300013307\|Ga0157372_10350234	Not Available	1721	Open in IMG/M
3300013503\|Ga0120127_10027129	All Organisms → cellular organisms → Bacteria → Proteobacteria	1051	Open in IMG/M
3300014497\|Ga0182008_10102685	All Organisms → cellular organisms → Bacteria → Proteobacteria	1414	Open in IMG/M
3300014497\|Ga0182008_10260466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	897	Open in IMG/M
3300015077\|Ga0173483_10157197	All Organisms → cellular organisms → Bacteria → Proteobacteria	1009	Open in IMG/M
3300015200\|Ga0173480_10379154	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300015371\|Ga0132258_11191678	All Organisms → cellular organisms → Bacteria → Proteobacteria	1925	Open in IMG/M
3300015373\|Ga0132257_100035591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5445	Open in IMG/M
3300020069\|Ga0197907_11001315	All Organisms → cellular organisms → Bacteria → Proteobacteria	1449	Open in IMG/M
3300020070\|Ga0206356_11005726	All Organisms → cellular organisms → Bacteria → Proteobacteria	709	Open in IMG/M
3300020070\|Ga0206356_11539623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	638	Open in IMG/M
3300020077\|Ga0206351_10778454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	1470	Open in IMG/M
3300020081\|Ga0206354_10396421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	916	Open in IMG/M
3300020082\|Ga0206353_10109756	All Organisms → cellular organisms → Bacteria → Proteobacteria	1354	Open in IMG/M
3300020082\|Ga0206353_11631768	All Organisms → cellular organisms → Bacteria → Proteobacteria	1674	Open in IMG/M
3300021445\|Ga0182009_10237971	All Organisms → cellular organisms → Bacteria → Proteobacteria	899	Open in IMG/M
3300025321\|Ga0207656_10024514	All Organisms → cellular organisms → Bacteria → Proteobacteria	2440	Open in IMG/M
3300025898\|Ga0207692_11199272	Not Available	504	Open in IMG/M
3300025903\|Ga0207680_10243177	All Organisms → cellular organisms → Bacteria → Proteobacteria	1241	Open in IMG/M
3300025903\|Ga0207680_10341784	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
3300025903\|Ga0207680_10388260	All Organisms → cellular organisms → Bacteria → Proteobacteria	985	Open in IMG/M
3300025911\|Ga0207654_10546460	All Organisms → cellular organisms → Bacteria → Proteobacteria	822	Open in IMG/M
3300025920\|Ga0207649_10346322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	1098	Open in IMG/M
3300025923\|Ga0207681_10850521	All Organisms → cellular organisms → Bacteria → Proteobacteria	763	Open in IMG/M
3300025925\|Ga0207650_10104859	All Organisms → cellular organisms → Bacteria → Proteobacteria	2182	Open in IMG/M
3300025930\|Ga0207701_10154075	All Organisms → cellular organisms → Bacteria → Proteobacteria	2036	Open in IMG/M
3300025931\|Ga0207644_10312198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	1269	Open in IMG/M
3300025931\|Ga0207644_11709055	Not Available	527	Open in IMG/M
3300025932\|Ga0207690_10310376	All Organisms → cellular organisms → Bacteria → Proteobacteria	1237	Open in IMG/M
3300025933\|Ga0207706_10335036	Not Available	1316	Open in IMG/M
3300025933\|Ga0207706_10671785	All Organisms → cellular organisms → Bacteria → Proteobacteria	886	Open in IMG/M
3300025941\|Ga0207711_10544330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	1083	Open in IMG/M
3300025942\|Ga0207689_10210595	All Organisms → cellular organisms → Bacteria → Proteobacteria	1606	Open in IMG/M
3300025944\|Ga0207661_11901169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	541	Open in IMG/M
3300025945\|Ga0207679_10424320	All Organisms → cellular organisms → Bacteria → Proteobacteria	1174	Open in IMG/M
3300025949\|Ga0207667_11862285	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300026078\|Ga0207702_10151924	Not Available	2107	Open in IMG/M
3300026089\|Ga0207648_10492674	All Organisms → cellular organisms → Bacteria → Proteobacteria	1121	Open in IMG/M
3300026095\|Ga0207676_10919069	All Organisms → cellular organisms → Bacteria → Proteobacteria	859	Open in IMG/M
3300026116\|Ga0207674_11448182	All Organisms → cellular organisms → Bacteria → Proteobacteria	656	Open in IMG/M
3300027424\|Ga0209984_1050181	All Organisms → cellular organisms → Bacteria → Proteobacteria	610	Open in IMG/M
3300027775\|Ga0209177_10170330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	754	Open in IMG/M
3300028379\|Ga0268266_11566134	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300028587\|Ga0247828_10156629	All Organisms → cellular organisms → Bacteria → Proteobacteria	1147	Open in IMG/M
3300028597\|Ga0247820_10565403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	781	Open in IMG/M
3300028889\|Ga0247827_11259958	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300031058\|Ga0308189_10177759	All Organisms → cellular organisms → Bacteria → Proteobacteria	753	Open in IMG/M
3300031716\|Ga0310813_10549058	All Organisms → cellular organisms → Bacteria → Proteobacteria	1016	Open in IMG/M
3300031716\|Ga0310813_10805911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	846	Open in IMG/M
3300031824\|Ga0307413_11889824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ardenticatenia → Ardenticatenales → unclassified Ardenticatenales → Ardenticatenales bacterium	536	Open in IMG/M
3300031908\|Ga0310900_10444432	All Organisms → cellular organisms → Bacteria → Proteobacteria	995	Open in IMG/M
3300031938\|Ga0308175_100267814	All Organisms → cellular organisms → Bacteria → Proteobacteria	1724	Open in IMG/M
3300031938\|Ga0308175_100363223	All Organisms → cellular organisms → Bacteria → Proteobacteria	1500	Open in IMG/M
3300031938\|Ga0308175_100500432	Not Available	1291	Open in IMG/M
3300031938\|Ga0308175_100532300	All Organisms → cellular organisms → Bacteria → Proteobacteria	1254	Open in IMG/M
3300031938\|Ga0308175_101175867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	852	Open in IMG/M
3300031939\|Ga0308174_10046704	All Organisms → cellular organisms → Bacteria → Proteobacteria	2902	Open in IMG/M
3300031944\|Ga0310884_10494650	All Organisms → cellular organisms → Bacteria → Proteobacteria	717	Open in IMG/M
3300031996\|Ga0308176_10474913	All Organisms → cellular organisms → Bacteria → Proteobacteria	1264	Open in IMG/M
3300031996\|Ga0308176_12470963	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300033412\|Ga0310810_10712255	All Organisms → cellular organisms → Bacteria → Proteobacteria	930	Open in IMG/M
3300033475\|Ga0310811_10906769	All Organisms → cellular organisms → Bacteria → Proteobacteria	794	Open in IMG/M
3300033480\|Ga0316620_10074948	All Organisms → cellular organisms → Bacteria → Proteobacteria	2448	Open in IMG/M
3300033486\|Ga0316624_10823520	All Organisms → cellular organisms → Bacteria → Proteobacteria	826	Open in IMG/M
3300033513\|Ga0316628_100170227	All Organisms → cellular organisms → Bacteria → Proteobacteria	2578	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	53.68%
Environmental	Environmental	46.32%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	53.68%
Terrestrial	Environmental → Terrestrial	46.32%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.29%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.91%
Roots	Host-Associated → Plants → Roots	1.47%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	22.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.76%
Loam	Environmental → Terrestrial → Soil → Loam	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.15%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.47%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	22.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.76%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.56%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.15%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.21%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.47%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	9.56%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	8.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	6.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	5.15%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.21%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	2.21%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.47%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.47%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.47%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.47%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.47%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.47%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.47%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.47%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.47%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.47%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.74%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.74%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.74%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.74%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005903	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_303	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027424	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0727.00004950	2162886012	Miscanthus Rhizosphere	MTSPSRNTVGVYDRPHPLRTRKVIVPVLVAVVVTIGYAVFFYLR
deeps_03343540	2199352024	Soil	MALPSRSAVGVYDRPHPLRTRKVLIPALVAIVTAMGYGAWFYFR
ICChiseqgaiiDRAFT_20823362	3300000033	Soil	MNAPSRKSVGIYDRPHPLRTRKVLIPALVAVAVTAVYAAWWWFAR*
ICChiseqgaiiFebDRAFT_135263202	3300000363	Soil	MTSPSPRNTVGVYDRPHPLRTRKVIVPVLVAVVVTIGYAVFFYLR*
soilH1_101838492	3300003321	Sugarcane Root And Bulk Soil	VEQRSSRNAVGVYDRPPAWRTRKVLVPVAIFVVVAIAYALYFLL*
soilH2_102653592	3300003324	Sugarcane Root And Bulk Soil	VEQRSSRNAVGVYDRPPAWRTRKVLVPVAIFVVVAVAYALYFLL*
soilH2_104038972	3300003324	Sugarcane Root And Bulk Soil	VPRTVGIYDRPHPLRTRKVLVPLAVAAVVALVYALWFYLS*
Ga0062593_1006887102	3300004114	Soil	MPPPSRNTVGVYDRPHPLRTRKVLVPVLVAVVVIIGYALYFLLR*
Ga0062593_1034303291	3300004114	Soil	MTSPSRNTVGVYDRPHPLRTRKVIVPVLVAVVVTIGYAVFFYLR*
Ga0062590_1028817922	3300004157	Soil	SPSRNTVGVYDRPHPLRTRKVIVPVLVAVVVTIGYAVFFYLR*
Ga0070658_100317752	3300005327	Corn Rhizosphere	MNDRPSGRSRNAVGVYERPHPLRTRKVLVPVVIFVLMALVYGLYFLLR*
Ga0070658_102535572	3300005327	Corn Rhizosphere	MPGGTVGVYDRPHPLRTRKVLVPAAIAVVVALGYAGWFYLR*
Ga0070658_103307362	3300005327	Corn Rhizosphere	MSDPGKPTTAASRNSVGVYDRPHPLRTRKVLVPTAIAVVVGIGYALWFYLR*
Ga0070676_103000002	3300005328	Miscanthus Rhizosphere	MAEPSRKSVGVYDRPHPLRTRKVLIPVIVAIVVAAAYALWAYLA*
Ga0070676_106445701	3300005328	Miscanthus Rhizosphere	MAEPSRKSVGVYDRPHPLRTRKVLIPVLVALVVAAAYALWAYLA*
Ga0070690_1002299332	3300005330	Switchgrass Rhizosphere	MTSPSRNTVGVYDRPHPLRTRKVMVPVLVAVVVTIGYAVFFYLR*
Ga0070670_1000557732	3300005331	Switchgrass Rhizosphere	MPPPQSRNTVGVYDRPHPLRTRKVLVPVLMAVVVVIAYALYFMLR*
Ga0070670_1001124211	3300005331	Switchgrass Rhizosphere	TARPEETPMTSPSRNTVGVYDRPHPLRTRKVIVPVLVAVVVTIGYAVFFYLR*
Ga0070666_102120892	3300005335	Switchgrass Rhizosphere	MAEPSRKSVGVYDRPHPLRTRKVLIPVIVAIVVAVAYALWAHFA*
Ga0070666_104988842	3300005335	Switchgrass Rhizosphere	MTMPSRSTVGVYDRPHPLRTRKVMVPVIVAIVVTIAYAIWWYVA*
Ga0068868_1011502021	3300005338	Miscanthus Rhizosphere	MAEPSRKSVGVYDQPHPLRTRKVLIPVIVAIVVAVAYALWAHFA*
Ga0068868_1014257852	3300005338	Miscanthus Rhizosphere	EGTPMTSPSRNTVGVYDRPHPLRTRKVIVPVLVAVVVTIGYAVFFYLR*
Ga0068868_1017089852	3300005338	Miscanthus Rhizosphere	MTAPSRNTVGVYDRPHPLRTRKVLVPVLVAVVVAIVYAVWWYVA*
Ga0068868_1019304832	3300005338	Miscanthus Rhizosphere	MPPPSRNTVGVYDRPHPLRTRKVLVPVLVAVVVIIGYALY
Ga0070661_1011746232	3300005344	Corn Rhizosphere	MPSRSSVGVYDRPHPLRTRKVVVPVLIAVVVAVAYAMWWYVG*
Ga0070692_107614892	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MNDRPSGRSRNAVGVYERPHPLRTRKVLVPVVIFVLMALVYGLYFLMR*
Ga0070673_1003291702	3300005364	Switchgrass Rhizosphere	MAEPSRKSVGVYDRPHPLRTRKVLIPVIVTIVVAVAYALWAHFA*
Ga0070659_1003081972	3300005366	Corn Rhizosphere	MPSRSSVGVYDRPHPLRTRKVVVPVLIAVVVAAAYAMWWYVG*
Ga0070659_1004593612	3300005366	Corn Rhizosphere	SAPHGPARPGKSPMPGGTVGVYDRPHPLRTRKVLVPAAIAVVVALGYAGWFYLR*
Ga0070714_1001179273	3300005435	Agricultural Soil	MNKQTRGAVGVYDRPHPLRTRKALVSAAVAIVVAAGYALWFYLR*
Ga0070711_1002985772	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MPSRSSVGVYDRPHPLRMRKVVVPMLIAAVVAVAYAIGWYVG*
Ga0070662_1013002091	3300005457	Corn Rhizosphere	ITMAEPSRKSVGVYDRPHPLRTRKVLIPVIVAIVVAAAYALWAYLA*
Ga0070681_113203322	3300005458	Corn Rhizosphere	MPSPPRNTVGVYDRPHPLRTRKVLVPVLAAVVVTIAYALWWYLA*
Ga0068867_1020131421	3300005459	Miscanthus Rhizosphere	HQSARILMPEPSRKSVGVYDRPHPLRTRKVLLPVVIAIVVAAVYAMWAYLT*
Ga0070696_1010164682	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MPRTVGVYDRPHPLRTRKVLVPLAVAAVAGLAYALWFYLR*
Ga0068855_1000338854	3300005563	Corn Rhizosphere	MPSRSSVGVYDRPHPLRTRKVVVPVLIAVVVAVAYAIWWYVG*
Ga0068864_1009437153	3300005618	Switchgrass Rhizosphere	RPSTEARITMAEPSRKSVGVYDRPHPLRTRKVLIPVIVAIVVAAAYALWAYLA*
Ga0068870_104478341	3300005840	Miscanthus Rhizosphere	RNTVGVYDRPHPLRTRKVIVPVLVAVVVTIGYAVFFYLR*
Ga0075279_100244012	3300005903	Rice Paddy Soil	VSVSIPRKAVGVYDRPHPFRTRRVLVPAAVVAVTIAAYALWFFLT*
Ga0075422_102063581	3300006196	Populus Rhizosphere	MTSPSRNTVGVYDRPHPLRTRKVMVPVLVAVVVTLGYAVFFY
Ga0097621_1002580542	3300006237	Miscanthus Rhizosphere	MAEPSRKSVGVYDRPHPLRTRKVLIVIVAMVVAVAYALWAHFA*
Ga0097621_1010934832	3300006237	Miscanthus Rhizosphere	MTAPSRNTVGVYDRPHPLRTRKVLVPVLVAVVVGIVYAVWWYVA*
Ga0079222_100370082	3300006755	Agricultural Soil	MPRTVGVYDRPHPLRTRKVLVPLAVAAVAGLAYALWFYLS*
Ga0105248_124621662	3300009177	Switchgrass Rhizosphere	MTTPSRNTVGVYDRPHPLRTRKVLVPVLVAVVVAIVYAVWWYVA*
Ga0105237_108050032	3300009545	Corn Rhizosphere	LNPRPEFMSDPGKPTTAASRNSVGVYDRPHPLRTRKVLVPVVIFVLMALVYGLYFLLR*
Ga0134128_100843521	3300010373	Terrestrial Soil	MERDRSRNAVGVYDRPPAWRTRKVLVPVAIFVVVAVAYALYFLR*
Ga0134122_102175232	3300010400	Terrestrial Soil	MTAPSRNTVGVYDRPHPLRTRKVLVPAVVAVGVAILYGLWAYFA*
Ga0134121_117924321	3300010401	Terrestrial Soil	MTTPSRNTVGVYDRPHPLRTRKVLVPVLVAVVVAIVYAVWWYLA*
Ga0150985_1102285332	3300012212	Avena Fatua Rhizosphere	MTEPSRKSVGVYDRPHPLRTRKVLIPVIVALVVAAAYALWAYLA*
Ga0150985_1145305052	3300012212	Avena Fatua Rhizosphere	MTTPSRNTVGVYDRPHPLRTRKVLVPVLVAVVVAIAYAVWWYVA*
Ga0150985_1197369322	3300012212	Avena Fatua Rhizosphere	MTVPSRSTVGVYDRPHWLRTRKVVAPLVVAAIVAVGYAVWWYVA*
Ga0150985_1216375572	3300012212	Avena Fatua Rhizosphere	MPSRNTVGVYDRPHPLRTRKVIVPVLVAVVVAIAYAVWWYVR*
Ga0150984_1014488991	3300012469	Avena Fatua Rhizosphere	MTEPSRKSVGVYDRPHPLRTRKVLIPVIVAIVVTAA
Ga0150984_1045638112	3300012469	Avena Fatua Rhizosphere	MTVPSRSTVGVYDRPHWLRTRKVVAPLLVAGIVAVGYAVWWYVA*
Ga0150984_1124871391	3300012469	Avena Fatua Rhizosphere	MPEPSRKSVGVYDRPHPLRTRKVLLPVVIAIVVAAVYAMWAYLT*
Ga0150984_1208143132	3300012469	Avena Fatua Rhizosphere	MPTPSRNTVGVYDRPHPLRTRKVLVPVLIAVVVAIAYAVWWYVA*
Ga0157301_100991191	3300012911	Soil	MTSPSRNTVGVYDRPHPLRTRKVIVPVLVAVVVTIGYA
Ga0164298_116450471	3300012955	Soil	VYDRPHPFRTRKVFVPVLVAVVVAIAYAIWWYVS*
Ga0164303_106195592	3300012957	Soil	MAPPSRSAVGVYERPHPLRTRKVLIPALVAIVTAMGYGAWFYFR*
Ga0164304_100832372	3300012986	Soil	MAPPSRSAVVVYERPHPLRTRKVLIPALVAIVTAMGYGAWFYFR*
Ga0164306_103330442	3300012988	Soil	MARPSRSAVGVYERPHPLRTRKVLIPALVAIVTAMGYGAWFYFR*
Ga0164305_110389171	3300012989	Soil	LRAPTMNDRPSGRSRNAVGVYERPHPLRTRKVLVPVVIFVLMALVYGLYFLLR*
Ga0164305_115011412	3300012989	Soil	MTSPSRNTVGVYDRPHPLRTRKVIVPVLGAVVVTIGYAVFFYLR*
Ga0157373_100087394	3300013100	Corn Rhizosphere	MNDRPSGLSRNAVGVYERPHPLRTRKVLVPVVIFVLMALVYGLYFLLR*
Ga0157371_107487362	3300013102	Corn Rhizosphere	MERDRSRNAVGVYDRPPAWRTRKVLVPVAIFVVVAVAYALYFLL*
Ga0157370_100778903	3300013104	Corn Rhizosphere	VPGGTVGVYDRPHPLRTRKVLVPAAIAVVVALGYAGWFYLR*
Ga0157370_101409221	3300013104	Corn Rhizosphere	HSYLRAPTMNDRPSGRSRNAVGVYERPHPLRTRKVLVPVVIFVLMALVYGLYFLLR*
Ga0157370_103636742	3300013104	Corn Rhizosphere	MDQGRSRNAVGVYDRPPAWRTRKVLVPVAIFVVVAIAYTLYFLL*
Ga0157369_100400944	3300013105	Corn Rhizosphere	MTMPSRSSVGVYDRPHPLRTRKVVVPVLIAVVVAAAYAMWWYVG*
Ga0157369_111414722	3300013105	Corn Rhizosphere	MNDRPSGRSRNAVGVYERPHPLLTRKVLVPVVIFVLMALVYGLYFLLR*
Ga0157372_101941122	3300013307	Corn Rhizosphere	MPPPSRNTVGVYDRPHPLRTRKVLVPVLVAVVVMIGYALYFLLR*
Ga0157372_103502341	3300013307	Corn Rhizosphere	NAVGVYDRPPAWRTRKVLVPVAIFVAVAVAYALYFLR*
Ga0120127_100271292	3300013503	Permafrost	MSLPSRSAVGVYDRPHPLRTRKVLIPALVAIVTAMGYGAWFYFR*
Ga0182008_101026851	3300014497	Rhizosphere	SIMDQGRSRNAVGVYDRPPAWRTRKVLVPVAIFVVVAIAYTLYFLL*
Ga0182008_102604662	3300014497	Rhizosphere	MESSMNAPSRKSVGIYDRPHPLRTRKVLVPVVIFVLMALVYGLYFLLR*
Ga0173483_101571972	3300015077	Soil	MTSPSRNTVGVYDQPHPLRTRKVIVPVLVAVVVTIGYAVFFYLR*
Ga0173480_103791541	3300015200	Soil	SARRRARTARPEETPMTSPSRNTVGVYDRPHPLRTRKVIVPVLVAVVVTIGYAVFFYLR*
Ga0132258_111916782	3300015371	Arabidopsis Rhizosphere	MSEGSRKAVGVYDRPHPLRTRKVLIPALVAIAVAVAYAVFAYFS*
Ga0132257_1000355915	3300015373	Arabidopsis Rhizosphere	MPRTVGIYDRPHPLRTRKALVSLAVAAVVGLGYALWFFLR*
Ga0197907_110013152	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MNDRPSGRSRNAVGVYERPHPLRTRKVLVPVVIFVLMALVYGLYFLLR
Ga0206356_110057262	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MSDPGKPTTAASRNSVGVYDRPHPLRTRKVLVPTAIAVVVGIGYALWFYLR
Ga0206356_115396232	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MDQGRSRNAVGVYDRPPAWRTRKVLVPVAIFVVVAVAYALYFLL
Ga0206351_107784542	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	MNDRPSGLSRNAVGVYERPHPLRTRKVLVPVVIFVLMALVYGLYFLLR
Ga0206354_103964212	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MNDRPSGRSRNAVGVYERPHPLRTRKVLVPVVIFVLMALVYGLYFLMR
Ga0206353_101097562	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MERDRSRNAVGVYDRPPAWRTRKVLVPVAIFVVVAVAYALYFLR
Ga0206353_116317682	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MPGGTVGVYDRPHPLRTRKVLVPAAIAVVVALGYAGWFYLR
Ga0182009_102379712	3300021445	Soil	MNAPSRKSVGIYDRPHPLRTRKVLIPVLVAVAVSAVYATWWWLAR
Ga0207656_100245142	3300025321	Corn Rhizosphere	MPPPSRNTVGVYDRPHPLRTRKVLVPVLVAVVVIIGYALYFLLR
Ga0207692_111992721	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	RCHSYLRAPTMNDRPSGRSRNAVGVYERPHPLRTRKVLVPVVIFVLMALVYGLYFLLR
Ga0207680_102431772	3300025903	Switchgrass Rhizosphere	MAEPSRKSVGVYDRPHPLRTRKVLIPVIVAIVVAVAYALWAHFA
Ga0207680_103417842	3300025903	Switchgrass Rhizosphere	MTMPSRSTVGVYDRPHPLRTRKVMVPVIVAIVVTIAYAIWWYVA
Ga0207680_103882601	3300025903	Switchgrass Rhizosphere	EGTPMTSPSRNTVGVYDRPHPLRTRKVIVPVLVAVVVTIGYAVFFYLR
Ga0207654_105464602	3300025911	Corn Rhizosphere	MPRTVGVYDRPHPLRTRKVLVPLAVAAVAGLAYALWFYLR
Ga0207649_103463222	3300025920	Corn Rhizosphere	MPSRSSVGVYDRPHPLRTRKVVVPVLIAVVVAVAYAIWWYVG
Ga0207681_108505212	3300025923	Switchgrass Rhizosphere	MAEPSRKSVGVYDRPHPLRTRKVLIPVLVALVVAAAYALWAYLA
Ga0207650_101048592	3300025925	Switchgrass Rhizosphere	MPPPQSRNTVGVYDRPHPLRTRKVLVPVLMAVVVVIAYALYFMLR
Ga0207701_101540752	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MAEPSRKSVGVYDQPHPLRTRKVLIPVIVAIVVAVAYALWAHFA
Ga0207644_103121982	3300025931	Switchgrass Rhizosphere	MTSPSRNTVGVYDRPHPLRTRKVIVPVLVAVVVTI
Ga0207644_117090551	3300025931	Switchgrass Rhizosphere	MTTPSRNTVGVYDRPHPLRTRKVLVPVLVAVVVAIVYAVWWYLA
Ga0207690_103103762	3300025932	Corn Rhizosphere	MPSRSSVGVYDRPHPLRTRKVVVPVLIAVVVAAAYAMWWYVG
Ga0207706_103350362	3300025933	Corn Rhizosphere	MTGGPRKAVGVYDRPHPLRTRKVLVPVVIFVLMALVYGLYFLLR
Ga0207706_106717852	3300025933	Corn Rhizosphere	MAEPSRKSVGVYDRPHPLRTRKVLIPVIVAIVVAAAYALWAYLA
Ga0207711_105443301	3300025941	Switchgrass Rhizosphere	MTSPSRNTVGVYDRPHPLRTRKVIVPVLVAVVVTIG
Ga0207689_102105951	3300025942	Miscanthus Rhizosphere	MPPPSRNTVGVYDRPHPLRTRKVLLPVLVAVVVIIGYALYFLLR
Ga0207661_119011692	3300025944	Corn Rhizosphere	GRRFSSIMDQGRSRNAVGVYDRPPAWRTRKVLVPVAIFAVVAIAYTLYFLL
Ga0207679_104243202	3300025945	Corn Rhizosphere	SRVRARQVGPSMTMPSRSSVGVYDRPHPLRTRKVVVPVLIAVVVAAAYAMWWYVG
Ga0207667_118622851	3300025949	Corn Rhizosphere	APRPEFMSDPGKPTTAASRNSVGVYDRPHPLRTRKVLVPTAIAVVVGIGYALWFYLR
Ga0207702_101519243	3300026078	Corn Rhizosphere	MPSRSSVGVYDRPHPLRTRKVVVPVLIAAVVAAAYAIGWYVG
Ga0207648_104926741	3300026089	Miscanthus Rhizosphere	DPQPRRVSSMAEPSRKSVGVYDQPHPLRTRKVLIPVIVAIVVAVAYALWAHFA
Ga0207676_109190692	3300026095	Switchgrass Rhizosphere	VGVYDRPHPLRTRKVLIPVIVAIVVAVAYALWAHFA
Ga0207674_114481822	3300026116	Corn Rhizosphere	VDQGRSRNAVGVYDRPPAWRTRKVLVPLAIFVVVAIAYTLYFLL
Ga0209984_10501812	3300027424	Arabidopsis Thaliana Rhizosphere	MNAPSRKSVGIYDRPHPLRTRKVLIPALVAVAVSAVYAAWWWFAR
Ga0209177_101703301	3300027775	Agricultural Soil	MPRTVGVYDRPHPLRTRKVLVPLAVAAVAGLAYAL
Ga0268266_115661342	3300028379	Switchgrass Rhizosphere	MTSPSRNTVGVYDRPHPLGTRKVMVPVLVAVVVTIGYAVFFYLR
Ga0247828_101566291	3300028587	Soil	APTARPEEIPMTSPSRNTVGVYDRPHPLRTRKVMVPVLVAVVVTIGYAVFFYLR
Ga0247820_105654031	3300028597	Soil	MPSPSRNTVGVYDRPHPLRTRKVIVPVLVAVVVTIGYA
Ga0247827_112599582	3300028889	Soil	MPSPSRNTVGVYDRPHPLRTRKVIVPVLVAVVVTIGYAVFFYLR
Ga0308189_101777592	3300031058	Soil	MTPPSRNTVGVYDRPHPWRTRKVLVPVVVAIVVAIGYALYFYLR
Ga0310813_105490581	3300031716	Soil	EAMPPPSRNTVGVYDRPHPLRTRKVLVPVLVAVVVIIGYALSFLLR
Ga0310813_108059111	3300031716	Soil	MDQGRSRNAVGVYDRPPAWRTRKVLVPVAIFVVVAIAYTLYFLL
Ga0307413_118898242	3300031824	Rhizosphere	MAPPSRNSVGVYDRPSPWRTRKVLLPAIVAVVVGIAYALWAYFT
Ga0310900_104444322	3300031908	Soil	MTSPSRNTVGVYDRPHPLRTRKVVVPVLVAVVVTIGYAVFFYLR
Ga0308175_1002678142	3300031938	Soil	MNDHRNRRSRNAVGVYDRPHPLRTRKVLVPVVIFVLMALVYGLYFLLR
Ga0308175_1003632232	3300031938	Soil	TPTRSSVGVYDRPHPLRTRKVLVPVAIVVAIAIAYAIYFLLR
Ga0308175_1005004322	3300031938	Soil	MNDRRNGSSRNAVGIYDRPHPLRTRKVLVPVGIFVLMALVYGLYFLLR
Ga0308175_1005323002	3300031938	Soil	MNDRRNGRSRNAVGVYDRPHPLRTRRVLVPVVIFVLIAIVYALYFLLR
Ga0308175_1011758672	3300031938	Soil	VNDTRNGRARGTVGVYNRPHPLRTRKVLVPAVIFVLIAIAYALYFLLR
Ga0308174_100467044	3300031939	Soil	MTTPSRNTVGVYDRPHPLRTRKVMVPVVIAVIVAVAYAIWWYVA
Ga0310884_104946501	3300031944	Soil	ARPEETPMTSPSRNTVGVYDRPHPLRTRKVIVPVLVAVVVTIGYAVFFYLR
Ga0308176_104749131	3300031996	Soil	GVYNRPHPLRTRKVLVPAVIFVLIAIAYALYFLLR
Ga0308176_124709632	3300031996	Soil	VNDTGNGRSRGTVGVYDRPHPLRTRKVLVPAVIFVLIAIAYVLYFLLR
Ga0310810_107122552	3300033412	Soil	MTMPSRSSVGVYDRPHPLRTRKVVVPVLIAAVVAAAYAIWWYVG
Ga0310811_109067692	3300033475	Soil	VGVYDRPHPLRTRKVLVPVLVAVVVTIGYAVFFYLR
Ga0316620_100749482	3300033480	Soil	MPATRNAVGVYDRPHPLRTRKALVAAAIALVVALGYGLWFALR
Ga0316624_108235202	3300033486	Soil	AMPATRNAVGVYDRPHPLRTRKALVAAAIALVVALGYGLWFALR
Ga0316628_1001702271	3300033513	Soil	MTSSRNAVGVYDRPHPLRTRKALVAAGISLVVAAGYAAWFYFR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F057490

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences