Metagenome / Metatranscriptome Family F057255

Overview

Basic Information

• Family ID: F057255
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 136
• Average Sequence Length: 39 residues
• Representative Sequence: MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKEPA
• Number of Associated Samples: 113
• Number of Associated Scaffolds: 136

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 77.94 %
• % of genes near scaffold ends (potentially truncated): 21.32 %
• % of genes from short scaffolds (< 2000 bps): 91.91 %
• Associated GOLD sequencing projects: 106
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (69.118 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (13.235 % of family members)
• Environment Ontology (ENVO): Unclassified (27.206 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (47.059 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 0.00%
  Coil/Unstructured: 100.00%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 136 Family Scaffolds
PF08811	DUF1800	2.94
PF00589	Phage_integrase	1.47
PF13414	TPR_11	1.47
PF11954	DUF3471	0.74
PF13453	zf-TFIIB	0.74
PF13577	SnoaL_4	0.74
PF02641	DUF190	0.74
PF12697	Abhydrolase_6	0.74
PF13505	OMP_b-brl	0.74
PF01872	RibD_C	0.74

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 136 Family Scaffolds
COG5267	Uncharacterized conserved protein, DUF1800 family	Function unknown [S]	2.94
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	0.74
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.74
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.74
COG1993	PII-like signaling protein	Signal transduction mechanisms [T]	0.74

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.85 %
Unclassified	root	N/A	30.15 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.12 %
Unclassified	root	N/A	30.15 %
Viruses	superkingdom	All Organisms → Viruses	0.74 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.12 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.74 %
Unclassified	root	N/A	30.15 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.56 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.74 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.21 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.94 %
Unclassified	root	N/A	30.15 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.21 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.74 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.74 %
Unclassified	root	N/A	30.15 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	27.94 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.94 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.74 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.47 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.47 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.74 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.74 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.74 %
Unclassified	root	N/A	30.15 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.74 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.74 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.74 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	1.47 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.74 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.74 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	0.74 %
Unclassified	root	N/A	30.15 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.47 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.74 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.47 %
Baekduiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae	0.74 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	1.47 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.74 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.74 %
Unclassified	root	N/A	30.15 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.74 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.47 %
Baekduia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae → Baekduia	0.74 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1.47 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.74 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.74 %
Unclassified	root	N/A	30.15 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.74 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.47 %
Baekduia soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae → Baekduia → Baekduia soli	0.74 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1.47 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.74 %
Rhizobium etli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli	0.74 %
Unclassified	root	N/A	30.15 %

Level 11

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.74 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.47 %
Baekduia soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae → Baekduia → Baekduia soli	0.74 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1.47 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.74 %
Rhizobium etli CNPAF512	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	0.74 %
Unclassified	root	N/A	30.15 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2170459010|GIO7OMY02JWIBD	Not Available	501
3300004025|Ga0055433_10086029	All Organisms → cellular organisms → Bacteria	695
3300004633|Ga0066395_10776478	Not Available	573
3300005332|Ga0066388_100251211	All Organisms → cellular organisms → Bacteria	2407
3300005332|Ga0066388_100394744	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2029
3300005332|Ga0066388_108610361	All Organisms → cellular organisms → Bacteria	507
3300005334|Ga0068869_100717978	All Organisms → cellular organisms → Bacteria	854
3300005367|Ga0070667_100720330	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	924
3300005434|Ga0070709_10956260	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680
3300005507|Ga0074259_10892405	All Organisms → cellular organisms → Bacteria	660

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.79%
Host-Associated	Host-Associated	27.21%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	10.29%
Plants	Host-Associated → Plants	27.21%
Terrestrial	Environmental → Terrestrial	62.50%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	2.94%
Marine	Environmental → Aquatic → Marine	1.47%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.91%
Sediment	Environmental → Aquatic → Sediment	5.15%
Soil	Environmental → Terrestrial → Soil	62.50%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.74%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.88%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.74%
Loam	Environmental → Terrestrial → Soil → Loam	17.65%
Sand	Environmental → Terrestrial → Soil → Sand	0.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.15%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.62%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.47%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.47%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.21%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.29%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.74%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.21%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.03%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.15%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.41%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.47%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.74%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.74%

Habitat

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.41%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.74%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.47%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.74%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.21%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.21%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.47%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.47%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.74%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.47%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.74%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.74%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.82%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.74%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.21%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.47%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.74%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.47%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.24%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.82%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.68%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.41%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.21%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental
3300004025	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1	Environmental
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental
3300005507	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5	Host-Associated
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_07230990	2170459010	Grass Soil	MSQIGEPLRIIEVEPREEPVPEKEVPFEEPADPVEEPA
Ga0055433_100860292	3300004025	Natural And Restored Wetlands	KEYSMSEIGEPLRIIEVEPREEPVPEKEIPFEQPADPVKEPA*
Ga0066395_107764781	3300004633	Tropical Forest Soil	MSQIGEPLRIIEVEPLEEPVPEKELPEKEVPFEQPADPVKEPA*
Ga0066388_1002512112	3300005332	Tropical Forest Soil	MSQIGEPLRIIEVEPREEPVPERDVPFEQPADPVAVPVKEPA*
Ga0066388_1003947442	3300005332	Tropical Forest Soil	MSQIGEPLRIIEVEPLEEPVPQKEVPFEQPADPIKEPAW*
Ga0066388_1086103611	3300005332	Tropical Forest Soil	KEYSMSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKEPA*
Ga0068869_1007179781	3300005334	Miscanthus Rhizosphere	MSQIGEPLRIIEVEPLQEPVPEKEVPFEQPADPVKQPADPVKEPA*
Ga0070667_1007203302	3300005367	Switchgrass Rhizosphere	YSMSQIGEPLRIIEVEPLEEPVPEKEVPFEQPAYPVKEPA*
Ga0070709_109562602	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	YSMSQIGEPLRIIEVEPREEPVPEKEVPFEQPADPVKEPA*
Ga0074259_108924051	3300005507	Arabidopsis Rhizosphere	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKEPA*
Ga0070730_107019851	3300005537	Surface Soil	MSQIGEPLRIIEVEPREEPVPEKEVPFEQPADPVEEPA*
Ga0068859_1017117142	3300005617	Switchgrass Rhizosphere	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPVDPVKEPA*
Ga0066905_1012382942	3300005713	Tropical Forest Soil	MSQIGEPLRIIEVEPLEEPVPEKEVPFVQPADPVKEPA*
Ga0066903_1004667904	3300005764	Tropical Forest Soil	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVREPA*
Ga0066903_1017214603	3300005764	Tropical Forest Soil	MSQIGEPLRIIEVEPLEEPVPQREVPFEEPADPVKEPA*
Ga0066903_1020293592	3300005764	Tropical Forest Soil	MSQIGEPVRIIEVEPLEEPVPEKEVPFEQPADPVKEPA*
Ga0066903_1027982671	3300005764	Tropical Forest Soil	MSQIGEPLRIIEVEPLEEPVPQKEVPFEQPADPVKEPA*
Ga0066903_1031432552	3300005764	Tropical Forest Soil	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPAHPVKEPA*
Ga0066903_1036671382	3300005764	Tropical Forest Soil	MEYSMSQIGEPLRIIEVQPLEEPVPEKEVPFEQPADPVKEPA*
Ga0066903_1057233182	3300005764	Tropical Forest Soil	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPPNPIKEPDDPVKEPA*
Ga0066903_1061731752	3300005764	Tropical Forest Soil	MSEIGEPLRIIEVEPREEPVPEKEVPFEQPADPVKEPAE*
Ga0066903_1063031931	3300005764	Tropical Forest Soil	MSQMGEPLRIIEVEPLKEPVPEKEVPFEQPADPVKEPA*
Ga0066903_1084469762	3300005764	Tropical Forest Soil	MSQIGEPLRIIEVEPLDEPVPEKEVPFELPADPVKEPA*
Ga0074479_102693942	3300005829	Sediment (Intertidal)	MSQIGEPLRIIEVEPQEEPVPEKEVPFEQPADPVKEPA*
Ga0075024_1003621222	3300006047	Watersheds	MSQIGEPLRIIEVEPREEPVPEREVPFEQPADPIKEPA*
Ga0075017_1016622052	3300006059	Watersheds	IGEPLRIIEVEPREEPVPEREVPFEQPADPVKEPA*
Ga0075019_105763822	3300006086	Watersheds	MSQIGEPLRIIEVEPREEPVPEREVPFEQPADPVKEPA*
Ga0066653_100454912	3300006791	Soil	MSQIGEPLRIIKVEPLEEPVPEKEVPFEQPADPVKEPA*
Ga0066659_106168222	3300006797	Soil	QIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKETA*
Ga0075428_1005278031	3300006844	Populus Rhizosphere	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKE
Ga0075421_1000302685	3300006845	Populus Rhizosphere	MSQIGEPLRIIEVKPLEEPVPEKEVPFEQPADPVKEPA*
Ga0075425_1009351424	3300006854	Populus Rhizosphere	VSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKE
Ga0075425_1022639411	3300006854	Populus Rhizosphere	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKEP
Ga0075419_102156803	3300006969	Populus Rhizosphere	MSQIGEPLRIIEVEPLEEPVPEKEIPFEQPADPVKEPA*
Ga0105250_103190922	3300009092	Switchgrass Rhizosphere	MSQIGEPLRIIEVEPREEPVPEKEVPFEQPADPVKEPA*
Ga0111539_100969844	3300009094	Populus Rhizosphere	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPIKQPADPVKEPA*
Ga0111539_108668472	3300009094	Populus Rhizosphere	MSEIGEPLRIIEVEPLEEPVPEKEVPLEQPVDPVKEPA*
Ga0105245_115431332	3300009098	Miscanthus Rhizosphere	MSQIGEPLRIIEVEPRQEPVPEKEVPFEQPADPVEEPA*
Ga0075418_101067723	3300009100	Populus Rhizosphere	MSQIGEPLRIIEVEPLEEPIPEKEVPFEQPADPVKEPA*
Ga0114129_125669661	3300009147	Populus Rhizosphere	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVK
Ga0126380_107382532	3300010043	Tropical Forest Soil	MSQIGEPLRIIEVEPLEEPVPQKEVPFEQPTDPVKEPA*
Ga0126373_100218042	3300010048	Tropical Forest Soil	MANIGEPLRIIEVEPREEPVPEKEVPFEQPADPVKEPA*
Ga0134111_103313522	3300010329	Grasslands Soil	MSQIGEPLRIIEVEPLEEPVPEKEVPFEEPAEPVKEPA*
Ga0126372_102020442	3300010360	Tropical Forest Soil	MSQIGEPLRIIEVEPLEEPVPERELPFEQPADPVKEPA*
Ga0126372_124466152	3300010360	Tropical Forest Soil	MEYSMAQIGEPVRIIEVKPLEEPVPEKEVPFEQPADPVKEPA*
Ga0126379_112176951	3300010366	Tropical Forest Soil	MSQIGEPLRIIEVEPIEEPVPEKEVPFEQPADPVKEPA*
Ga0126379_128865732	3300010366	Tropical Forest Soil	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPGDPVKEPA*
Ga0126379_135459782	3300010366	Tropical Forest Soil	GEPLRIIEVEPLEEPVPEKEVPFEQPADPVKEPA*
Ga0126381_1013665583	3300010376	Tropical Forest Soil	MSQLGEPLRVIEVEPLEEPVPEKEVPFEQPADPVK
Ga0136449_1012237101	3300010379	Peatlands Soil	MSQIGEPLRIIEVEPREEPVPEKELPFEQPADPVKEPAE*
Ga0126383_107016412	3300010398	Tropical Forest Soil	MSQIGEPLRIIEIEPLEEPVPEKEVPFEQPAYPVK
Ga0126383_116422742	3300010398	Tropical Forest Soil	MSQIGEPLKIIEVEPLEEPVPEKEVPFEQPADPVKEPA*
Ga0137776_18498323	3300010937	Sediment	MSQIGEPLRIIEVEPLEEPVPEKEPFEQPADPVKEPA*
Ga0150983_103878281	3300011120	Forest Soil	MSQIGEPLRIIAVEPLEEPVPQKEVPFEQPADPVKEPA*
Ga0137388_120172792	3300012189	Vadose Zone Soil	MSQIGEPLRVIEVEPLEEPVPEKEVPFEQPVDPVREPA*
Ga0137399_101816412	3300012203	Vadose Zone Soil	MSQIGEPLTIIEVEPLEEPVPEKEVPFEQPADPVKEPA*
Ga0137377_105456541	3300012211	Vadose Zone Soil	MSQIGEPQRIIEVEPLEEPVPEKEVPFEQPADPVKEPA*
Ga0150984_1030224332	3300012469	Avena Fatua Rhizosphere	MSQIGEPLRIIEVEPLEEPVPQKEVPFEQPAHPVKEPA*
Ga0150984_1081542142	3300012469	Avena Fatua Rhizosphere	MEYSMAQIGEPLRIIEVKPLEEPVPEKEVPFEQPVDPVKEPA*
Ga0157345_10188731	3300012498	Arabidopsis Rhizosphere	MSQIGEPLRIIEVEPLEEPVPEREVPVPEKEVPFEQPADPVKEPA*
Ga0157339_10068942	3300012505	Arabidopsis Rhizosphere	MSQMGEPVRIIEVEPLEEPVPEKEVPFEQPADPVKEPA*
Ga0157324_10133661	3300012506	Arabidopsis Rhizosphere	MSQIGEPLRIIEVEPLKEPVPEKEVPFEQPADPVKEPA*
Ga0157332_10361452	3300012511	Soil	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPAKEPA*
Ga0157338_10100142	3300012515	Arabidopsis Rhizosphere	MSQIGEPIRIIEVEPLEEPVPEKEVPFEQPADPVKEPA*
Ga0137398_111327161	3300012683	Vadose Zone Soil	KEYSMSQIGEPLRIIEVEPREEPVPEREVPFEQPADPVKEPA*
Ga0157296_100862642	3300012905	Soil	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKQPADPVKEPA*
Ga0137395_102654332	3300012917	Vadose Zone Soil	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPAAPVKEPA*
Ga0137410_108683282	3300012944	Vadose Zone Soil	MSQIGEPLRIIEVEPLGEPVPEKEVPFEQPADPVKEPA*
Ga0164300_101607603	3300012951	Soil	MSQIGEPLRIIEIEPLEEPVPGKEVPFEQPADPVKEPA*
Ga0126369_109963872	3300012971	Tropical Forest Soil	MANIGEPLRIIEVEPREEPVPEKEVPFEQPADPVEEPA*
Ga0126369_123925351	3300012971	Tropical Forest Soil	MAQIGNPLKIIEVEPLEEPVPEKEVPFDQPADPFKEPV*
Ga0164304_105898682	3300012986	Soil	IGEPLRIIEVEPLEEPVPEKEVPFEQPVDPVKEPA*
Ga0157374_110129692	3300013296	Miscanthus Rhizosphere	MSQIGGPVRIIEVEPLEEPVPEKEVPFEQPADPVKEPA*
Ga0180070_10258281	3300015251	Soil	QIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKEPA*
Ga0134073_101997621	3300015356	Grasslands Soil	SQIGEPLRIIEVEPLQEPVPEKEVPFEQPADPVKEPA*
Ga0134085_101372022	3300015359	Grasslands Soil	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPAYPVKEPA*
Ga0132258_103014112	3300015371	Arabidopsis Rhizosphere	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPIKEPA*
Ga0132258_135198342	3300015371	Arabidopsis Rhizosphere	MSQMGEPVRIIEVEPLEEPVPEKEVPFEQPADPAKEPA*
Ga0132256_1011084691	3300015372	Arabidopsis Rhizosphere	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPDDPVKEPA*
Ga0132257_1007428613	3300015373	Arabidopsis Rhizosphere	MSQIGEPVRIIEVEPLEEPVPQKEAPFEQPADPVKEPA*
Ga0132255_1040738522	3300015374	Arabidopsis Rhizosphere	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKEPV*
Ga0132255_1060684042	3300015374	Arabidopsis Rhizosphere	MSQIGEPLRTIEVEPLKDPVPEKEVPFEQPADPVREPA*
Ga0182041_105002643	3300016294	Soil	MSQIGEPLRVIEVEPLEEPVPEKEVPFEQPAAPVKEPA
Ga0182035_106450741	3300016341	Soil	MSEIGEPLRIIEVEPREEPVPEKEVPFEQPADPVKEPAE
Ga0182034_104095223	3300016371	Soil	MSQIGEPLRIIEVEPIEEPVPEKEVPFEQPADPVKEPA
Ga0182040_107951862	3300016387	Soil	MSQIGEPLRVIEVEPLEEPVPEKEVPFEQPADPVKEPA
Ga0163161_107144362	3300017792	Switchgrass Rhizosphere	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKEPA
Ga0187818_100834881	3300017823	Freshwater Sediment	MSQIGEPLRIIEVEPREEPVPEREVPFEQPADPVKEPA
Ga0187806_10452271	3300017928	Freshwater Sediment	EYSMSQIGEPLRIIEVEPREEPVPEREVPFEQPADPVKEPA
Ga0187778_101908161	3300017961	Tropical Peatland	MSQIGEPIRIIEVEPREEPVPEKEVPFEQPADPVT
Ga0187778_102490812	3300017961	Tropical Peatland	MANIGEPLRIIEVEPREEPVPEKEVPFEQPADPVKEPE
Ga0187776_101840541	3300017966	Tropical Peatland	MSQIGEPLRVIEVEPLEEPVPAKEVPFEQPADPVKEPA
Ga0187781_103481942	3300017972	Tropical Peatland	MSQIGEPLRIIEVEPREEPVPEREAPFEQPADPVKEPA
Ga0187816_104319411	3300017995	Freshwater Sediment	MSQIGEPLRIIEVEPFEEPVPEREVPFEQPADPVKEPA
Ga0184608_104317362	3300018028	Groundwater Sediment	MSEIGEPLRIIEVEPLEEPVPEKEVPLEQPADPVKE
Ga0184626_103543941	3300018053	Groundwater Sediment	MSEIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKEPA
Ga0187765_102405443	3300018060	Tropical Peatland	MSQIGEPVKIIEVEPREEPVPEKEIPFEEPADPVKEPA
Ga0190270_101430984	3300018469	Soil	MSQIGEPIRIIEVEPLEEPVPEKEVPFEQPADPVKEPA
Ga0187796_13321621	3300019264	Peatland	MSQIGEPLRIIEVEPREEPVPERDVPFEQPADPVAVPVKEPA
Ga0210403_104633213	3300020580	Soil	MSQIGEPLRIIEVEPREEPVPEKEVPFEQPADPVKEPAY
Ga0242655_101015882	3300022532	Soil	MSQIGEPLRIIEVEPREEPVPEKEVPFELPADPVEEPA
Ga0242662_100557061	3300022533	Soil	MSQIGEPLRIIEVEPREEPVPEREVPFEQPSDPVKEPA
Ga0247665_10240191	3300024219	Soil	KEYSMSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKEPA
Ga0209431_105114822	3300025313	Soil	MEIGEPEREIEVWPLEEPVPEEMPVEAPEPVRIPA
Ga0207693_112865762	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSQIGEPLRVIEVEPLEEPVPQKEVPFEQPADPVKEPA
Ga0207652_107374352	3300025921	Corn Rhizosphere	MAQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKEPA
Ga0207650_112816152	3300025925	Switchgrass Rhizosphere	MSQIGEPVRIIEVEPLEEPVPEKEVPFEQPADPVKEPA
Ga0207706_108151932	3300025933	Corn Rhizosphere	MSQIGEPLIIIEVEPLEEPVPEKEVPFEQPADPVKEPA
Ga0207689_106942351	3300025942	Miscanthus Rhizosphere	MSQIGEPLRIIEVEPLQEPVPEKEVPFEQPADPVKQPADPVKEPA
Ga0210067_10248981	3300025947	Natural And Restored Wetlands	MSQIGEPLRIIEVEPLEKPVPEKEVPFEQPADPVKEPA
Ga0207668_108702872	3300025972	Switchgrass Rhizosphere	MSQIGEPLRIIEVEPLEEPVPEKQVPFEQPADPVKEPA
Ga0207658_107058691	3300025986	Switchgrass Rhizosphere	SSDLLRIIEVEPLEEPVPEKEVPFEQPAYPVKEPA
Ga0209161_102747282	3300026548	Soil	MSQIGEPLRIIVVEPLEEPVPEKEVPFEQPADPVKEPA
Ga0208475_10095991	3300027018	Soil	SMSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKEPA
Ga0209876_10076072	3300027041	Groundwater Sand	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKQPANPVKEPA
Ga0209684_10541911	3300027527	Tropical Forest Soil	GHARIIMKYSMSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKEPA
Ga0209799_10249432	3300027654	Tropical Forest Soil	MSQIGEPLRIIEVEPLEEPVPEKELPFEQPADPVKEPA
Ga0209040_104996592	3300027824	Bog Forest Soil	IGEPLRIIEVEPREEPVPEREVPFEQPADPVKEPA
Ga0209580_102862473	3300027842	Surface Soil	SQIGEPLRIIEVEPREEPVPEKEVPFEQPADPVEEPA
Ga0209814_102283402	3300027873	Populus Rhizosphere	MSQIGEPLRIIEVEPLEEPIPEKEVPFEQPADPVKEPA
Ga0209465_103555662	3300027874	Tropical Forest Soil	MSQIGEPLRIIEVEPLEEPVPEKEVPFVQPADPVKEPA
Ga0209382_100388723	3300027909	Populus Rhizosphere	MSQIGEPLRIIEVKPLEEPVPEKEVPFEQPADPVKEPA
Ga0209382_102071351	3300027909	Populus Rhizosphere	MSQIGDPLRIIEVEPLEEPVPEKEVPFEQPADPVKEPA
Ga0247663_10559372	3300028145	Soil	MSQIGEPLRIIEVEPLKEPVPEKEVPFEQPADPVKEPA
Ga0307281_102881052	3300028803	Soil	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVQEPA
Ga0310887_102226122	3300031547	Soil	MSEIGEPLRIIEVEPLEEPVPEKEVPLEQPVDPVKEPA
Ga0310915_110900892	3300031573	Soil	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPIKEPA
Ga0310813_118114922	3300031716	Soil	MSQIGEPLRIIEVQPLEEPVPEKEVPFEQPADPVKEPA
Ga0306918_113654791	3300031744	Soil	RFCRKECGMSQIGEPLRIIEVEPLEEPVPQKEVPFEQPADPVKEPA
Ga0307477_107196442	3300031753	Hardwood Forest Soil	MSQIGEPLRIIEVEPLREPVPEKEVPFEQPADPVKEPA
Ga0310910_104601192	3300031946	Soil	ECSMSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKEPA
Ga0310903_102106351	3300032000	Soil	MSEIGEPLRIIEVEPLEEPVPEKEVPLEQPVDPVK
Ga0306920_1002839092	3300032261	Soil	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPADPVKDPA
Ga0335082_103958492	3300032782	Soil	MSQIGEPIRIIEVEPREEPVPEKEVPFEQPADPVKEPA
Ga0335084_107244173	3300033004	Soil	MSQIGEPLRIIEVEPLEEPVPEKEVPFEQPAYPVKEPA
Ga0335077_120881112	3300033158	Soil	MSQIGEPLRIIEVKPREEPVPERDVPFEQPADPVAVPVKEPAQ