NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F056932

Metagenome / Metatranscriptome Family F056932

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F056932
Family Type Metagenome / Metatranscriptome
Number of Sequences 137
Average Sequence Length 43 residues
Representative Sequence AESKCCPFFDFHIDLEREGKLVCLRLTGEEGIKAFIRAEFKVEK
Number of Associated Samples 111
Number of Associated Scaffolds 137

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 5.11 %
% of genes near scaffold ends (potentially truncated) 93.43 %
% of genes from short scaffolds (< 2000 bps) 89.78 %
Associated GOLD sequencing projects 101
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (92.701 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(27.007 % of family members)
Environment Ontology (ENVO) Unclassified
(27.007 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(52.555 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 12.50%    β-sheet: 16.67%    Coil/Unstructured: 70.83%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 137 Family Scaffolds
PF11146DUF2905 10.22
PF00334NDK 5.84
PF13468Glyoxalase_3 2.92
PF02517Rce1-like 2.92
PF01545Cation_efflux 2.92
PF01451LMWPc 2.19
PF02629CoA_binding 2.19
PF01773Nucleos_tra2_N 1.46
PF07676PD40 1.46
PF01497Peripla_BP_2 1.46
PF00248Aldo_ket_red 1.46
PF13458Peripla_BP_6 1.46
PF02604PhdYeFM_antitox 1.46
PF01850PIN 1.46
PF04011LemA 1.46
PF02463SMC_N 0.73
PF02195ParBc 0.73
PF03992ABM 0.73
PF12706Lactamase_B_2 0.73
PF13742tRNA_anti_2 0.73
PF02749QRPTase_N 0.73
PF02803Thiolase_C 0.73
PF13668Ferritin_2 0.73
PF07731Cu-oxidase_2 0.73
PF04916Phospholip_B 0.73
PF12849PBP_like_2 0.73
PF02518HATPase_c 0.73
PF07690MFS_1 0.73
PF03473MOSC 0.73
PF13087AAA_12 0.73
PF03853YjeF_N 0.73
PF02885Glycos_trans_3N 0.73
PF01522Polysacc_deac_1 0.73
PF13476AAA_23 0.73
PF00375SDF 0.73
PF01729QRPTase_C 0.73
PF09278MerR-DNA-bind 0.73
PF00034Cytochrom_C 0.73
PF01144CoA_trans 0.73
PF01557FAA_hydrolase 0.73
PF13569DUF4132 0.73

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 137 Family Scaffolds
COG0105Nucleoside diphosphate kinaseNucleotide transport and metabolism [F] 5.84
COG3965Predicted Co/Zn/Cd cation transporter, cation efflux familyInorganic ion transport and metabolism [P] 2.92
COG4449Predicted protease, Abi (CAAX) familyGeneral function prediction only [R] 2.92
COG0053Divalent metal cation (Fe/Co/Zn/Cd) efflux pumpInorganic ion transport and metabolism [P] 2.92
COG1230Co/Zn/Cd efflux system componentInorganic ion transport and metabolism [P] 2.92
COG1266Membrane protease YdiL, CAAX protease familyPosttranslational modification, protein turnover, chaperones [O] 2.92
COG4118Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressorDefense mechanisms [V] 1.46
COG2161Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM familyDefense mechanisms [V] 1.46
COG4558ABC-type hemin transport system, periplasmic componentInorganic ion transport and metabolism [P] 1.46
COG1972Nucleoside permease NupCNucleotide transport and metabolism [F] 1.46
COG1704Magnetosome formation protein MamQ, lipoprotein antigen LemA familyCell wall/membrane/envelope biogenesis [M] 1.46
COG1488Nicotinic acid phosphoribosyltransferaseCoenzyme transport and metabolism [H] 1.46
COG4592ABC-type Fe2+-enterobactin transport system, periplasmic componentInorganic ion transport and metabolism [P] 1.46
COG4594ABC-type Fe3+-citrate transport system, periplasmic componentInorganic ion transport and metabolism [P] 1.46
COG0614ABC-type Fe3+-hydroxamate transport system, periplasmic componentInorganic ion transport and metabolism [P] 1.46
COG4607ABC-type enterochelin transport system, periplasmic componentInorganic ion transport and metabolism [P] 1.46
COG0157Nicotinate-nucleotide pyrophosphorylaseCoenzyme transport and metabolism [H] 1.46
COG4670Acyl CoA:acetate/3-ketoacid CoA transferaseLipid transport and metabolism [I] 0.73
COG1788Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunitLipid transport and metabolism [I] 0.73
COG2132Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)Cell cycle control, cell division, chromosome partitioning [D] 0.73
COG2057Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunitLipid transport and metabolism [I] 0.73
COG0789DNA-binding transcriptional regulator, MerR familyTranscription [K] 0.73
COG0726Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 familyCell wall/membrane/envelope biogenesis [M] 0.73
COG0183Acetyl-CoA acetyltransferaseLipid transport and metabolism [I] 0.73
COG0062NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate epimerase domainNucleotide transport and metabolism [F] 0.73


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms92.70 %
UnclassifiedrootN/A7.30 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573000|GPBTN7E01DL09GNot Available515Open in IMG/M
3300001174|JGI12679J13547_1007195All Organisms → cellular organisms → Bacteria662Open in IMG/M
3300001593|JGI12635J15846_10374355All Organisms → cellular organisms → Bacteria866Open in IMG/M
3300002558|JGI25385J37094_10018692All Organisms → cellular organisms → Bacteria2478Open in IMG/M
3300002909|JGI25388J43891_1080922All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300002914|JGI25617J43924_10085862All Organisms → cellular organisms → Bacteria1137Open in IMG/M
3300002914|JGI25617J43924_10092322All Organisms → cellular organisms → Bacteria1089Open in IMG/M
3300004080|Ga0062385_10268561All Organisms → cellular organisms → Bacteria961Open in IMG/M
3300004082|Ga0062384_100401718All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae883Open in IMG/M
3300004092|Ga0062389_103201789All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300005167|Ga0066672_10082754All Organisms → cellular organisms → Bacteria1924Open in IMG/M
3300005187|Ga0066675_11037659All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300005332|Ga0066388_105526426All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300005468|Ga0070707_102040917All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300005536|Ga0070697_100032708All Organisms → cellular organisms → Bacteria4187Open in IMG/M
3300005536|Ga0070697_100313341All Organisms → cellular organisms → Bacteria1350Open in IMG/M
3300005555|Ga0066692_11031305All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300005557|Ga0066704_10222254All Organisms → cellular organisms → Bacteria1280Open in IMG/M
3300005561|Ga0066699_10767775All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes682Open in IMG/M
3300005598|Ga0066706_11310325All Organisms → cellular organisms → Bacteria548Open in IMG/M
3300005602|Ga0070762_10345953All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium947Open in IMG/M
3300005602|Ga0070762_10401014All Organisms → cellular organisms → Bacteria884Open in IMG/M
3300005764|Ga0066903_104616986All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium734Open in IMG/M
3300006028|Ga0070717_10561138Not Available1034Open in IMG/M
3300006163|Ga0070715_10517636All Organisms → cellular organisms → Bacteria686Open in IMG/M
3300006755|Ga0079222_10067888All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1740Open in IMG/M
3300006796|Ga0066665_10504823All Organisms → cellular organisms → Bacteria990Open in IMG/M
3300006893|Ga0073928_11162410Not Available521Open in IMG/M
3300006904|Ga0075424_102201496All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae580Open in IMG/M
3300006914|Ga0075436_100780783All Organisms → cellular organisms → Bacteria710Open in IMG/M
3300006954|Ga0079219_12135071All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300007255|Ga0099791_10504982All Organisms → cellular organisms → Bacteria → Acidobacteria587Open in IMG/M
3300007258|Ga0099793_10057543All Organisms → cellular organisms → Bacteria1731Open in IMG/M
3300007265|Ga0099794_10457234All Organisms → cellular organisms → Bacteria670Open in IMG/M
3300009012|Ga0066710_103581787All Organisms → cellular organisms → Bacteria → Acidobacteria586Open in IMG/M
3300009012|Ga0066710_103939862All Organisms → cellular organisms → Bacteria → Acidobacteria556Open in IMG/M
3300009038|Ga0099829_10489181Not Available1021Open in IMG/M
3300009088|Ga0099830_10279363All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1328Open in IMG/M
3300010043|Ga0126380_11927233All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300010048|Ga0126373_11558395All Organisms → cellular organisms → Bacteria → Acidobacteria726Open in IMG/M
3300010336|Ga0134071_10475935All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300010360|Ga0126372_10565662All Organisms → cellular organisms → Bacteria1083Open in IMG/M
3300010366|Ga0126379_10063785All Organisms → cellular organisms → Bacteria → Acidobacteria3105Open in IMG/M
3300010379|Ga0136449_103566539All Organisms → cellular organisms → Bacteria591Open in IMG/M
3300011269|Ga0137392_11030459All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium676Open in IMG/M
3300011270|Ga0137391_10684571All Organisms → cellular organisms → Bacteria853Open in IMG/M
3300011271|Ga0137393_10145968All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1971Open in IMG/M
3300011271|Ga0137393_11261779All Organisms → cellular organisms → Bacteria627Open in IMG/M
3300012096|Ga0137389_11726303All Organisms → cellular organisms → Bacteria → Acidobacteria522Open in IMG/M
3300012189|Ga0137388_11197572All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300012202|Ga0137363_10058461All Organisms → cellular organisms → Bacteria2791Open in IMG/M
3300012209|Ga0137379_11569124All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2558Open in IMG/M
3300012351|Ga0137386_10089843All Organisms → cellular organisms → Bacteria2161Open in IMG/M
3300012359|Ga0137385_10729975Not Available826Open in IMG/M
3300012359|Ga0137385_11443238All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300012361|Ga0137360_10186072All Organisms → cellular organisms → Bacteria → Acidobacteria1672Open in IMG/M
3300012361|Ga0137360_10720960All Organisms → cellular organisms → Bacteria857Open in IMG/M
3300012685|Ga0137397_10000152All Organisms → cellular organisms → Bacteria → Acidobacteria45691Open in IMG/M
3300012918|Ga0137396_10603703All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae812Open in IMG/M
3300012923|Ga0137359_10378616All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1257Open in IMG/M
3300012923|Ga0137359_10815520All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium808Open in IMG/M
3300012927|Ga0137416_10258760All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1425Open in IMG/M
3300012927|Ga0137416_10658603Not Available917Open in IMG/M
3300012927|Ga0137416_11617252All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium590Open in IMG/M
3300012971|Ga0126369_11346898All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium804Open in IMG/M
3300012971|Ga0126369_11726521All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium715Open in IMG/M
3300014154|Ga0134075_10446978All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium574Open in IMG/M
3300014165|Ga0181523_10279134All Organisms → cellular organisms → Bacteria948Open in IMG/M
3300015054|Ga0137420_1429687Not Available4321Open in IMG/M
3300015245|Ga0137409_10240202All Organisms → cellular organisms → Bacteria1613Open in IMG/M
3300015373|Ga0132257_101521645All Organisms → cellular organisms → Bacteria → Acidobacteria854Open in IMG/M
3300016294|Ga0182041_11809038All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300017936|Ga0187821_10504063All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300018468|Ga0066662_11861991All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300019789|Ga0137408_1304210All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1257Open in IMG/M
3300020582|Ga0210395_10576924Not Available845Open in IMG/M
3300020583|Ga0210401_10598898All Organisms → cellular organisms → Bacteria964Open in IMG/M
3300021088|Ga0210404_10237680All Organisms → cellular organisms → Bacteria987Open in IMG/M
3300021180|Ga0210396_10192738All Organisms → cellular organisms → Bacteria1823Open in IMG/M
3300021180|Ga0210396_10722369All Organisms → cellular organisms → Bacteria859Open in IMG/M
3300021405|Ga0210387_10598007All Organisms → cellular organisms → Bacteria980Open in IMG/M
3300021405|Ga0210387_11009742All Organisms → cellular organisms → Bacteria → Acidobacteria729Open in IMG/M
3300021406|Ga0210386_10941839All Organisms → cellular organisms → Bacteria → Acidobacteria738Open in IMG/M
3300021406|Ga0210386_11457900All Organisms → cellular organisms → Bacteria572Open in IMG/M
3300021475|Ga0210392_10696176All Organisms → cellular organisms → Bacteria757Open in IMG/M
3300021479|Ga0210410_10086843All Organisms → cellular organisms → Bacteria2753Open in IMG/M
3300021479|Ga0210410_10469139All Organisms → cellular organisms → Bacteria1125Open in IMG/M
3300021479|Ga0210410_10781070All Organisms → cellular organisms → Bacteria839Open in IMG/M
3300021560|Ga0126371_10514986All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1345Open in IMG/M
3300021560|Ga0126371_11335928All Organisms → cellular organisms → Bacteria849Open in IMG/M
3300022840|Ga0224549_1014573All Organisms → cellular organisms → Bacteria1116Open in IMG/M
3300024186|Ga0247688_1006107All Organisms → cellular organisms → Bacteria → Acidobacteria1691Open in IMG/M
3300024325|Ga0247678_1054673All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae648Open in IMG/M
3300026325|Ga0209152_10350622All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300026331|Ga0209267_1154612All Organisms → cellular organisms → Bacteria941Open in IMG/M
3300026528|Ga0209378_1020147All Organisms → cellular organisms → Bacteria3734Open in IMG/M
3300026538|Ga0209056_10585570All Organisms → cellular organisms → Bacteria564Open in IMG/M
3300026538|Ga0209056_10701811All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300026547|Ga0209156_10048439All Organisms → cellular organisms → Bacteria → Acidobacteria2273Open in IMG/M
3300026548|Ga0209161_10506507All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300027110|Ga0208488_1063095All Organisms → cellular organisms → Bacteria623Open in IMG/M
3300027645|Ga0209117_1003157All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5737Open in IMG/M
3300027671|Ga0209588_1130548All Organisms → cellular organisms → Bacteria802Open in IMG/M
3300027671|Ga0209588_1136201All Organisms → cellular organisms → Bacteria782Open in IMG/M
3300027824|Ga0209040_10388862All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300027846|Ga0209180_10063978All Organisms → cellular organisms → Bacteria2050Open in IMG/M
3300027846|Ga0209180_10119584All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1511Open in IMG/M
3300027846|Ga0209180_10733954All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300027862|Ga0209701_10167140All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1332Open in IMG/M
3300027884|Ga0209275_10797169All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300027889|Ga0209380_10751439All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300027895|Ga0209624_10157871All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1500Open in IMG/M
3300027903|Ga0209488_10532105All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae859Open in IMG/M
3300028016|Ga0265354_1031184All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300028047|Ga0209526_10561744All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium736Open in IMG/M
3300028536|Ga0137415_11017385All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300028536|Ga0137415_11311050All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium542Open in IMG/M
3300028673|Ga0257175_1107271All Organisms → cellular organisms → Bacteria → Acidobacteria550Open in IMG/M
3300028792|Ga0307504_10458671All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300028906|Ga0308309_10482468Not Available1070Open in IMG/M
3300030013|Ga0302178_10338240All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Candidatus Frankia nodulisporulans684Open in IMG/M
3300030687|Ga0302309_10234174All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Candidatus Frankia nodulisporulans931Open in IMG/M
3300030687|Ga0302309_10377381All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium691Open in IMG/M
3300031090|Ga0265760_10095740All Organisms → cellular organisms → Bacteria934Open in IMG/M
3300031718|Ga0307474_11111192All Organisms → cellular organisms → Bacteria625Open in IMG/M
3300031720|Ga0307469_11626808All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300031753|Ga0307477_10365208All Organisms → cellular organisms → Bacteria991Open in IMG/M
3300031753|Ga0307477_11063322All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300031754|Ga0307475_10076290Not Available2574Open in IMG/M
3300031754|Ga0307475_10123674All Organisms → cellular organisms → Bacteria → Acidobacteria2039Open in IMG/M
3300031754|Ga0307475_10710764All Organisms → cellular organisms → Bacteria → Acidobacteria801Open in IMG/M
3300031777|Ga0318543_10218797All Organisms → cellular organisms → Bacteria → Acidobacteria847Open in IMG/M
3300031837|Ga0302315_10114732All Organisms → cellular organisms → Bacteria1724Open in IMG/M
3300031897|Ga0318520_10708451All Organisms → cellular organisms → Bacteria → Acidobacteria629Open in IMG/M
3300032180|Ga0307471_100396805All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1506Open in IMG/M
3300032205|Ga0307472_101193774All Organisms → cellular organisms → Bacteria726Open in IMG/M
3300033134|Ga0335073_11182662All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens769Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil27.01%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil13.14%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil10.22%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil6.57%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.84%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil5.11%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.38%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil3.65%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.65%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.92%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.46%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.46%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.46%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.46%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.46%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.73%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.73%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.73%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.73%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.73%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.73%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.73%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.73%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.73%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.73%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573000Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)EnvironmentalOpen in IMG/M
3300001174Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cmEnvironmentalOpen in IMG/M
3300002909Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cmEnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022840Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5EnvironmentalOpen in IMG/M
3300024186Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29EnvironmentalOpen in IMG/M
3300024325Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19EnvironmentalOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026331Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)EnvironmentalOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300027110Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)EnvironmentalOpen in IMG/M
3300027645Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027824Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028016Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1Host-AssociatedOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028673Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-BEnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030013Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3EnvironmentalOpen in IMG/M
3300030687Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1EnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031837Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
N55_013018502189573000Grass SoilVLSFFDFHIDLEREGKLLCLRLTGKDGIKPFILAEFHVPPK
JGI12679J13547_100719513300001174Forest SoilDFHIDLEREGTLVCLRLTGGRGIKHFIQSEFQIPAK*
JGI12635J15846_1037435523300001593Forest SoilMLADLEREGALLCLRLTGAEGIKAFIRAELQMEAK*
JGI25385J37094_1001869213300002558Grasslands SoilCCPFFDFHIDLENEGKLVCLRLTGEEGIKAFIRAEFKVEK*
JGI25388J43891_108092213300002909Grasslands SoilKCCPFFDFHIDVERAGKLLCLRLTGEEGIKAFIRAEFGVEKMR*
JGI25617J43924_1008586213300002914Grasslands SoilKCCPFFDFHIDLEREGKLVCLRLTGEEGIKAFIRAELNVEK*
JGI25617J43924_1009232233300002914Grasslands SoilAESKCCPFFDFHIDLERGGKLACLRLAGEEGIKAFIRAEFKIENMK*
Ga0062385_1026856113300004080Bog Forest SoilWVVAENKCCPFFYFHIDLEKRGRLVCLGLTGPEGVKAFIREEFGVKNGK*
Ga0062384_10040171833300004082Bog Forest SoilGAESKCCSFLDFHIDVEAEGHLLCLRLTGEAGVKAFIRGEFGVKSGG*
Ga0062389_10320178923300004092Bog Forest SoilWVVAENKCCPFFYFHIDLEKRGRLVCLGLTGPEGVKAFIREEFGVKDGK*
Ga0066672_1008275443300005167SoilGAESKCCPFFDFHIDVERQGKLLCLRLTGEEVIKAFIRAEFGVEKIR*
Ga0066675_1103765913300005187SoilWVEAESKCCPFFDFHIDLEKQGRLVCLRLTGGPNIKAFIRSEFGLKELSPNAK*
Ga0066388_10552642623300005332Tropical Forest SoilAKESKCCPFFDFHIDLEEEGNLLCLRLAGEEGIKSFILSVFAAPR*
Ga0070707_10204091723300005468Corn, Switchgrass And Miscanthus RhizosphereVAEGKCCPFFDFHIDLEREGGLLCLRLTGAEGIKAFVRSEFQMGTK*
Ga0070697_10003270843300005536Corn, Switchgrass And Miscanthus RhizosphereKCCPFFDFHIDLEEGGRLLCLRLTGEEGIKEFIRSEFKVTAA*
Ga0070697_10031334113300005536Corn, Switchgrass And Miscanthus RhizosphereKCCPFFDFHIDLEEGGRLLCLRLTGEEGIKEFIRSEFKVSAT*
Ga0066692_1103130523300005555SoilGAESKCCPFFDFHIDVERQGKLLCLRLTGEEGIKAFIRAEFGVEKIR*
Ga0066704_1022225413300005557SoilAESKCCPFFDFHIDLEREGKLVCLRLTGEEGIKAFIRAEFKVEK*
Ga0066699_1076777533300005561SoilAESKCCPFFDFHIDLENEGRLVCLRLTGEEGIKAFIRAEFKIEK*
Ga0066706_1131032533300005598SoilAELAEWVVAESKCCPFFDFHIDLEREGKLACLRLTGEEGIKAFIRAEFKIEK*
Ga0070762_1034595313300005602SoilFLDFHLDLENEGQLLCLRLTGAPGVKPFIRAEFQVPAK*
Ga0070762_1040101413300005602SoilVEAKCCPFFNFHLDLEREGNLVCLGLAGAEGIKTFIRTEFQVPGK*
Ga0066903_10461698633300005764Tropical Forest SoilMLPLFDFHIDLEEEGSLLCLRLTGEEGIKAFIRTEFGVQ*
Ga0070717_1056113833300006028Corn, Switchgrass And Miscanthus RhizosphereMLCDFGRNLFFDFHIDLEREGGLLCLRLTGEDGIKPFILAEFHVPPK*
Ga0070715_1051763613300006163Corn, Switchgrass And Miscanthus RhizospherePFFDFHIDLEEEGKLVCLRLTGADGIKQFIRGEFGLK*
Ga0079222_1006788843300006755Agricultural SoilDFHIDLENEGKLICLRLTGEEGIKQFIRTEFHVQ*
Ga0066665_1050482323300006796SoilADWVLAESKCCSFFDFHIDLENEGKLICLRVTGEEGIKQFIRTEFGVH*
Ga0073928_1116241013300006893Iron-Sulfur Acid SpringFHIDLEREGSLLCLRLTGEEGIKPFMRSEFQVPTK*
Ga0075424_10220149613300006904Populus RhizosphereEGKCCPFFDFHIDLEREGKLLCLRLTGEAGIKAFIRAAFQVPENQQ*
Ga0075436_10078078333300006914Populus RhizosphereKCCPFFDFHIDLEKEGKLICLRLTGEEGIKQFIRAEFHVQ*
Ga0079219_1213507123300006954Agricultural SoilPFFDFHIDLENEGRLVCLRLTGEEGIKQFIRAEFAVR*
Ga0099791_1050498223300007255Vadose Zone SoilCPFFDFHIDLEREGALLCLRLTGGEGIKPFIRSEFQVAGK*
Ga0099793_1005754313300007258Vadose Zone SoilAAEGKCCQFFDFHIDLERQGTLLCLRLTGEEGIKAFIRAEFQVPVK*
Ga0099794_1045723413300007265Vadose Zone SoilKCCPFFDFHIDLEEEGRLLCLRLTGEEGIKAFIRAEFGVEKMK*
Ga0066710_10358178723300009012Grasslands SoilSFFDFHIDLENEGKLICLRVTGKEGIKQFIRTEFGVH
Ga0066710_10393986223300009012Grasslands SoilPFFDFHIDLENEGKLICLRLTGQEGIKQFIRAEFAVQ
Ga0099829_1048918123300009038Vadose Zone SoilFFDFHIDLEHEGALLCLRLTGEEGIKAFIRSEFPVTGK*
Ga0099830_1027936323300009088Vadose Zone SoilVKAGFPTRPFFDFHIDVEREGKLLCLRLTGEEGIKAFIRAEFRIENAKY*
Ga0126380_1192723313300010043Tropical Forest SoilSRCCPFFDFHIDLENEGKLVCLRLTGKEGVKEVIRSEFGLK*
Ga0126373_1155839523300010048Tropical Forest SoilCPFFDFHIDLENEGRLVCLRLTGAAGVKQFLRSEFSLP*
Ga0134071_1047593533300010336Grasslands SoilAESKCCPFFDFHIDLEREGKLACLRLTGEEGIKAFIRAEFKIEK*
Ga0126372_1056566233300010360Tropical Forest SoilVNESKCCPFFDFHIDLENEGKLVCLRLTGEEGIKQFIRAEFNVQ*
Ga0126379_1006378553300010366Tropical Forest SoilVAEGKCCPFFDFHIDLEQSGSLLCLRLTGEEGIKAFIRSEFSEAWSSQRQ*
Ga0136449_10356653923300010379Peatlands SoilAELADWSVVESKCCPFFDFHLDLERRGTLLCLRLTGEEGIKAFIRSEFRLTLKS*
Ga0137392_1103045923300011269Vadose Zone SoilAAEGKCCPFFDFHIDVEHEGKLLCLRLTGEEGIKPFIRSEFQVPAK*
Ga0137391_1068457113300011270Vadose Zone SoilAESKCCPFFDFHIDLEEEGRLLCLRLTGEEGIKAFIRAEFGVEKMK*
Ga0137393_1014596833300011271Vadose Zone SoilFDFHIDVEREGHLLCLRLTGEEGIKAFIRAEFKVDVVK*
Ga0137393_1126177913300011271Vadose Zone SoilCCPFFDFHIDVEREGRLLCLRLTGEEGIKAFIRAEFGVEK*
Ga0137389_1172630323300012096Vadose Zone SoilPFFDFHIDLEREGNLLCLRLTGEAGIKPFIRSEFQIPAK*
Ga0137388_1119757213300012189Vadose Zone SoilKCCEFFDFHIDLERRGSLLCLRLTGDEGIKPFIRAEFQVPAK*
Ga0137363_1005846133300012202Vadose Zone SoilMLCEFGRNPFFDFHIDLEREGRLLCLRLTGEDGIKLFILAEFHVPPK*
Ga0137379_1156912423300012209Vadose Zone SoilCPFFDFHIDLEREGSLLCLRLTGDDGIKAFIRTEFQVAEK*
Ga0137386_1008984313300012351Vadose Zone SoilWVAAESKCCPFFDFHIDLEREGRLVCLRLTGEEGIKAFIRAEFKVAK*
Ga0137385_1072997513300012359Vadose Zone SoilPFFDFHIDLEGAGSLLCLRLTGEDGIKPFIRAEFQVQVR*
Ga0137385_1144323823300012359Vadose Zone SoilFFDFHIDLEREGKLVCLRLTGEEGIKAFIRAECKIENAK*
Ga0137360_1018607243300012361Vadose Zone SoilVAEGKCCPFFDFHIDLERAGALLCLRLTGEEGIKAFIRTEFPAAEK*
Ga0137360_1072096023300012361Vadose Zone SoilPFFDFHIDLEREGGLLCLRLTGEEGIKPFIRSEFQIPTK*
Ga0137397_10000152473300012685Vadose Zone SoilDWVAAESKCCPFFDFHIDLEREGKLVCLRLTGEEGIKAFIRAEFKIEK*
Ga0137396_1060370333300012918Vadose Zone SoilFHIDLEREGSLLCLRLTGEKGVKEFIRTEFEVSAK*
Ga0137359_1037861623300012923Vadose Zone SoilVAESKCCPFFDFHIDLEREGTLVCLRLTGSEGVKAFIRAEFGVR*
Ga0137359_1081552023300012923Vadose Zone SoilRFFDFHIDLEREGTLLCLRLTGEEGIKPFIRSEFQVPAK*
Ga0137416_1025876043300012927Vadose Zone SoilEGKCCPFFDFHIDLERGGELLCLRLTGEEGIKPFIRSEFQVPAN*
Ga0137416_1065860333300012927Vadose Zone SoilFHIDLEREGALLCLRLTGEEGIKAFIRSEFPVAGK*
Ga0137416_1161725213300012927Vadose Zone SoilESKCCPFFDFHIDVEREGKLLCLRLTGEEGIKAFIRAEFKVDVVK*
Ga0126369_1134689823300012971Tropical Forest SoilESKCCPFFDFHIDLENEGTLVCLRLTGREGVKQFIRSEFGLK*
Ga0126369_1172652123300012971Tropical Forest SoilFDFHIDLENEGKLVCLRLTGEEGIKQFIRAEFRVQ*
Ga0134075_1044697813300014154Grasslands SoilESKCCPFLDFHIDLENEGKLVCLRLTGEEGIKAFIRAEFKVEK*
Ga0181523_1027913413300014165BogADWVVTEEKCCPFFYFHIDLEKEGTLVCLGLTGQPGIKDVIRAEFQVPGK*
Ga0137420_142968723300015054Vadose Zone SoilVLPFFDFHIDVEREGKLLCLRLTGEEGIKAFIRAEFGVEK*
Ga0137409_1024020213300015245Vadose Zone SoilADWVAAESKCCPFFGFHIDLEDEGKLLCLRLTGEEGVKPFMRAEFLVPPKS*
Ga0132257_10152164523300015373Arabidopsis RhizosphereFFDFHIDLEREGSLLCLRLTGEDGIKPFIRAEFQVPAK*
Ga0182041_1180903813300016294SoilKCCPFFDFHIDLEHEGKLLCLRLTGEEGIKAFIRAEFQLPGKQQ
Ga0187821_1050406323300017936Freshwater SedimentVVLESKCCPFFDFHIDLENRGKLVCLRLTGSEGIKAFIRSEFHI
Ga0066662_1186199113300018468Grasslands SoilCCPFFDFHIDVEREGKLLCLRLTGEEGIKAFIRAEFGVEKMR
Ga0137408_130421033300019789Vadose Zone SoilAESKCCPFFDFHIDLEEEGRLVCLRLTGAEGIKTFIRSEFGLK
Ga0210395_1057692413300020582SoilEWATVEAKCCPFFNFHLDLEREGNLVCLGLAGAEGIKTFIRTEFQVPGK
Ga0210401_1059889833300020583SoilAESKCWLFFDFHVDLEGEGSLLCLRLTGEEGIKPFIRAEFQVPVK
Ga0210404_1023768013300021088SoilKCCPFFDFHIDLEGEGTLLCLRLTGEEGVKAFIRAEFQVPMK
Ga0210396_1019273833300021180SoilCCPFFDFHIDLERDGKRVCLRLTGEEGIKAFIRSEFQVPAK
Ga0210396_1072236923300021180SoilGKCCPFFDFRIDLEHEGKLLCLRLTGEEGIKAFIRAEFQVPGKQQ
Ga0210387_1059800713300021405SoilTVAAEGKCCPFFDFHIDLEREGKLLCLRLTGEEGIKPFIRSEFQASPK
Ga0210387_1100974213300021405SoilPFFDFHIDLENEGKLVCLRLTGAEGIKAFIRAEFGLH
Ga0210386_1094183913300021406SoilPFFDFHIDLEREGHLVCLGLSGEEGIKAFIRTEFQVPAK
Ga0210386_1145790013300021406SoilFHIDLEKQGTLVCLGLTGAEGIKQFIRSEFWVREQK
Ga0210392_1069617613300021475SoilCSFLDFHIDVEAEGNLLCLRLTGAQGVKDFIRSEFSVKNGR
Ga0210410_1008684313300021479SoilFDFHIDLEREGKLACLRLTSEEGIKAFIRAEFKIEK
Ga0210410_1046913913300021479SoilAESKCCPFFDFHIDLENQGRLACLRLTGSAGIKDFIRSEFHL
Ga0210410_1078107013300021479SoilSKCCPFFDFHIDLAREGSLLCLRLAGAEGIKPFIRSEFQVAAK
Ga0126371_1051498633300021560Tropical Forest SoilVNESKCCPFFDFHIDLENEGKLICLRLTGEEGIKQFIRAEFGLD
Ga0126371_1133592813300021560Tropical Forest SoilSKCCPFFDFHIDLENEGKLVCLRLTGEEGIKQFIRAEFQVRS
Ga0224549_101457313300022840SoilYFHIDLEKEGRLVCLGLTGPEGVKAFIRGEFAVKGGK
Ga0247688_100610743300024186SoilVVAESKCCPFFDFHIDLEKQGRLVCLRLTGGTNIKTFIWSEFGLKKTWPSEQR
Ga0247678_105467313300024325SoilCPFFDFHIDLEKQGRLVCLRLTGGTNIKTFIWSEFGLKKTWPSEQR
Ga0209152_1035062213300026325SoilEWVVAESKCCPFFDFHIDLENQGKLACLRLTGEEGIKAFIRAEFKIEK
Ga0209267_115461233300026331SoilELAQWVVAESKCCPFFDFHIDLENGGKLVCLRLTGEEGIKALIRAEFNIR
Ga0209378_102014713300026528SoilWVVAESKCCPFFDFHIDLENQGKLACLRLTGEEGIKAFIRAEFKIEK
Ga0209056_1058557023300026538SoilESKCCPFFDFHIDLEKQGRLVCLRLTGGTNIKTFIRSEFGLKELSPNAK
Ga0209056_1070181123300026538SoilAAEGKCCQFFDFHIDLERQGTLLCLRLTGEEGIKTFIRAEFQVPVK
Ga0209156_1004843913300026547SoilKCCPFFDFHIDVERQGKLLCLRLAGEEGIKAFIRAEFGVEKMG
Ga0209161_1050650713300026548SoilVAESKCCPFFDFHIDLENQGKLVCLRLTGEEGIKAFIRAEFNIR
Ga0208488_106309523300027110Forest SoilVVAEEKCCPFFNFHIDLEKQGTLVCLGLTGAEGIKQFIRSEFQIPEQK
Ga0209117_100315723300027645Forest SoilMLADLEREGALLCLRLTGAEGIKAFIRAELQMEAK
Ga0209588_113054813300027671Vadose Zone SoilGAESKCCPFFDFHIDLEEEGRLLCLRLTGEEGIKAFIRAEFGVEKMK
Ga0209588_113620133300027671Vadose Zone SoilKCCPFFDFHIDLEEEGRLLCLRLTGEEGIKAFIRAEFGVEKMK
Ga0209040_1038886213300027824Bog Forest SoilFDFHIDLERRGGLLCLRLTGAEGVKPFIRSEFRVSAK
Ga0209180_1006397813300027846Vadose Zone SoilESKCCPFFDFHIDVEREGKLLCLRLTGEEGIKAFIRAEFGVEKMR
Ga0209180_1011958433300027846Vadose Zone SoilSKCCPFFDFHIDVEREGKLLCLRLTGEEGIKAFIRAEFKLEKTK
Ga0209180_1073395413300027846Vadose Zone SoilHIDVEREGKLLCLRLTGEEEIKAFIRAEFGVEKMK
Ga0209701_1016714023300027862Vadose Zone SoilVKAGFPTRPFFDFHIDVEREGKLLCLRLTGEEGIKAFIRAEFRIENAKY
Ga0209275_1079716913300027884SoilELAEWATVEAKCCPFFNFHLDLEREGNLVCLGLAGAEGIKTFIRTEFQVPGK
Ga0209380_1075143923300027889SoilFHIDLENEGKLLCLRLTGDEGIKAFIQSEFHVPAK
Ga0209624_1015787113300027895Forest SoilLAGWVTTEARCCPFFNFHIDLEREGNLVCLGLTGEDGIKAFIRIEFQVPAT
Ga0209488_1053210513300027903Vadose Zone SoilKCCPFFDFHIDLEKQGRLVCLRLTGGTNIKTFIRSEFGLKELSPNVK
Ga0265354_103118413300028016RhizosphereIVELAEWATVEAKCCPFFNFHLDLEKEGNLVCLGLAGAEGIKAFIRTEFQVPGK
Ga0209526_1056174423300028047Forest SoilGFHIDLENEGKLLCLRLTGEEGVKAFIRADFLVSSKS
Ga0137415_1101738533300028536Vadose Zone SoilAESKCCPFFDFHIDLENQGKLVCLRLTGEEGIKAFMRAEFKIR
Ga0137415_1131105013300028536Vadose Zone SoilEGKCCPFFDFHIDLERGGELLCLRLTGEEGIKPFIRSEFQVPAN
Ga0257175_110727123300028673SoilSEGKCCPFFDFHIDLEREGNLLCLRLTGEEGIKPFIRSEFQIPTK
Ga0307504_1045867133300028792SoilSKCCPFFDFHIDVEREGRLLCLRLTGEEGIKAFIRAQFSVR
Ga0308309_1048246823300028906SoilAEEKCCPFFNFHIDLEREGRLVCLGLGGADGIKPFIRTEFQVPEASDTKH
Ga0302178_1033824023300030013PalsaLADWVAAEQKCCPFFDFHIDWEREGTLLCLRLAGMEGVKAFIRMEFRVPAKHAGD
Ga0302309_1023417413300030687PalsaIDWEREGTLLCLRLAGMEGVKAFIRMEFQVPAKHAGD
Ga0302309_1037738113300030687PalsaSRCCPFLDFHLDLENEGQLLCLRLTGAPGVKPFIRAEFQVPAK
Ga0265760_1009574023300031090SoilAEGKCCPFFDFHIDLEREGKLLCLRLAGEEGIKAFIRAEFQVPGKRQ
Ga0307474_1111119213300031718Hardwood Forest SoilCCEFFDFHIDLERRGSLLCLRLTGDEGIKPFIRAEFQVPAK
Ga0307469_1162680813300031720Hardwood Forest SoilDFHIDLEREGKWACLRLTGEEGIKAFIKAEFKIENAK
Ga0307477_1036520833300031753Hardwood Forest SoilVAESKCCPFFDFHIDLEHEGKLACLRLTGEEGIKAFIRAEFKIEK
Ga0307477_1106332223300031753Hardwood Forest SoilFFDFHIDLEGEGSLLCLRLTGEEGVKAFIRTEFQLPVK
Ga0307475_1007629063300031754Hardwood Forest SoilEGKCCPFFDFHIDLEREGNLLCLRLTGEEGLKPFIRSEFQVPAK
Ga0307475_1012367413300031754Hardwood Forest SoilWVVAEGKCCPFFDFHIDLEREGALLCLRLTGEEGIKLFIRAEFQLAAK
Ga0307475_1071076413300031754Hardwood Forest SoilFDFHIDLEEQGNLLCLRLTGEEGVKEFIRTEFELGKK
Ga0318543_1021879723300031777SoilESKCCPFFDFHIDLENQRKLICLRLTGEQGIKQFIREEFMLP
Ga0302315_1011473213300031837PalsaVVAESKCCPFFYFHIDLEKEGRLVCLGLTGPEGVKAFIRGEFAVKGGK
Ga0318520_1070845113300031897SoilKCCPFFDFHIDLEQRGTLACLRLTGAQGIKPFIREEFRVPWR
Ga0307471_10039680513300032180Hardwood Forest SoilAEAKCCPFFDFHIDLEREGALLCLRLTGEEGVKSFIRVEFPLAKK
Ga0307472_10119377423300032205Hardwood Forest SoilPFFDFHIDQERERRLLRLQLTGEEGIKAFIRLEFAVPAR
Ga0335073_1118266223300033134SoilVHEAKCCPFFDFHIDLERRGSLICLRLTGAEGIKPIIRSEFGVPAE


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.