Metagenome Family F056879

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056879
Family Type	Metagenome
Number of Sequences	137
Average Sequence Length	59 residues
Representative Sequence	MLRVKSLMICFAFIVAFAGAALGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRK
Number of Associated Samples	116
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.78 %
% of genes near scaffold ends (potentially truncated)	99.27 %
% of genes from short scaffolds (< 2000 bps)	91.97 %
Associated GOLD sequencing projects	112
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.431 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (16.058 % of family members)
Environment Ontology (ENVO)	Unclassified (35.036 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.985 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 51.22% β-sheet: 0.00% Coil/Unstructured: 48.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF09084	NMT1	20.44
PF04909	Amidohydro_2	2.92
PF13379	NMT1_2	2.92
PF02798	GST_N	1.46
PF01274	Malate_synthase	1.46
PF03401	TctC	0.73
PF07883	Cupin_2	0.73
PF07690	MFS_1	0.73
PF04392	ABC_sub_bind	0.73
PF01546	Peptidase_M20	0.73
PF06983	3-dmu-9_3-mt	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	20.44
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	20.44
COG2225	Malate synthase	Energy production and conversion [C]	1.46
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.73
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.73
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.73
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.43 %
Unclassified	root	N/A	6.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.43 %
Unclassified	root	N/A	6.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.43 %
Unclassified	root	N/A	6.57 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	73.72 %
Unclassified	root	N/A	6.57 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.46 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	66.42 %
Unclassified	root	N/A	6.57 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.46 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	66.42 %
Unclassified	root	N/A	6.57 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.46 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.73 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.73 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	65.69 %
Unclassified	root	N/A	6.57 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	1.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.73 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.73 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	65.69 %
Unclassified	root	N/A	6.57 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.73 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_3092_length_1789_cov_11.666853	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1821	Open in IMG/M
3300000559\|F14TC_101477368	All Organisms → cellular organisms → Bacteria → Proteobacteria	537	Open in IMG/M
3300000787\|JGI11643J11755_11731127	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300000881\|JGI10215J12807_1430927	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	579	Open in IMG/M
3300000953\|JGI11615J12901_13630801	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300000956\|JGI10216J12902_104606624	Not Available	887	Open in IMG/M
3300000956\|JGI10216J12902_109419745	All Organisms → cellular organisms → Bacteria → Proteobacteria	2237	Open in IMG/M
3300003991\|Ga0055461_10206050	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300004157\|Ga0062590_102567311	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	541	Open in IMG/M
3300004463\|Ga0063356_101264273	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1077	Open in IMG/M
3300004463\|Ga0063356_101401169	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1029	Open in IMG/M
3300004463\|Ga0063356_102365259	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300004463\|Ga0063356_102760933	Not Available	756	Open in IMG/M
3300004643\|Ga0062591_100877991	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	838	Open in IMG/M
3300005174\|Ga0066680_10440071	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	824	Open in IMG/M
3300005179\|Ga0066684_10757167	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	646	Open in IMG/M
3300005186\|Ga0066676_11129282	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300005294\|Ga0065705_10943996	All Organisms → cellular organisms → Bacteria → Proteobacteria	563	Open in IMG/M
3300005332\|Ga0066388_106718205	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300005339\|Ga0070660_100201130	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1616	Open in IMG/M
3300005445\|Ga0070708_100902110	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	830	Open in IMG/M
3300005549\|Ga0070704_101635963	Not Available	594	Open in IMG/M
3300005560\|Ga0066670_10823926	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	563	Open in IMG/M
3300005713\|Ga0066905_100163809	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1619	Open in IMG/M
3300006058\|Ga0075432_10063009	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1323	Open in IMG/M
3300006169\|Ga0082029_1643151	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	600	Open in IMG/M
3300006196\|Ga0075422_10511977	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	546	Open in IMG/M
3300006237\|Ga0097621_101222190	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300006845\|Ga0075421_101404818	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	768	Open in IMG/M
3300006846\|Ga0075430_100580466	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300006846\|Ga0075430_101447699	All Organisms → cellular organisms → Bacteria → Proteobacteria	564	Open in IMG/M
3300006847\|Ga0075431_102014162	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	532	Open in IMG/M
3300006852\|Ga0075433_10192664	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1813	Open in IMG/M
3300006852\|Ga0075433_11287508	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	633	Open in IMG/M
3300006852\|Ga0075433_11452147	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	593	Open in IMG/M
3300006852\|Ga0075433_11716434	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	540	Open in IMG/M
3300006853\|Ga0075420_101177263	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	659	Open in IMG/M
3300006853\|Ga0075420_101751168	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	532	Open in IMG/M
3300006854\|Ga0075425_100474592	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1440	Open in IMG/M
3300006881\|Ga0068865_102113718	All Organisms → cellular organisms → Bacteria → Proteobacteria	512	Open in IMG/M
3300006969\|Ga0075419_10800034	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	675	Open in IMG/M
3300007004\|Ga0079218_11174162	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300009089\|Ga0099828_10248223	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1596	Open in IMG/M
3300009091\|Ga0102851_10675767	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1089	Open in IMG/M
3300009137\|Ga0066709_100024009	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6248	Open in IMG/M
3300009147\|Ga0114129_10532122	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1531	Open in IMG/M
3300009147\|Ga0114129_10564575	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1478	Open in IMG/M
3300009147\|Ga0114129_10845545	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1164	Open in IMG/M
3300009147\|Ga0114129_13031789	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	551	Open in IMG/M
3300009176\|Ga0105242_10273512	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1531	Open in IMG/M
3300009678\|Ga0105252_10409038	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	621	Open in IMG/M
3300009816\|Ga0105076_1054767	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	727	Open in IMG/M
3300010029\|Ga0105074_1034332	Not Available	871	Open in IMG/M
3300010046\|Ga0126384_11930121	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	563	Open in IMG/M
3300010047\|Ga0126382_10993814	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	735	Open in IMG/M
3300010048\|Ga0126373_10305211	All Organisms → cellular organisms → Bacteria	1589	Open in IMG/M
3300010358\|Ga0126370_12356258	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	528	Open in IMG/M
3300010371\|Ga0134125_12721149	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	538	Open in IMG/M
3300010398\|Ga0126383_12505724	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	600	Open in IMG/M
3300010399\|Ga0134127_10098177	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2558	Open in IMG/M
3300010400\|Ga0134122_10006453	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	8704	Open in IMG/M
3300011119\|Ga0105246_10673533	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	903	Open in IMG/M
3300011405\|Ga0137340_1028655	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1035	Open in IMG/M
3300011434\|Ga0137464_1274650	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300011439\|Ga0137432_1132381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	795	Open in IMG/M
3300011439\|Ga0137432_1229483	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300011442\|Ga0137437_1012555	All Organisms → cellular organisms → Bacteria	2918	Open in IMG/M
3300011445\|Ga0137427_10097921	All Organisms → cellular organisms → Bacteria	1183	Open in IMG/M
3300012173\|Ga0137327_1108488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	618	Open in IMG/M
3300012198\|Ga0137364_11460747	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	504	Open in IMG/M
3300012203\|Ga0137399_10569202	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	952	Open in IMG/M
3300012203\|Ga0137399_10964124	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	718	Open in IMG/M
3300012204\|Ga0137374_10269570	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1415	Open in IMG/M
3300012208\|Ga0137376_10036216	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3956	Open in IMG/M
3300012350\|Ga0137372_10015893	All Organisms → cellular organisms → Bacteria	7134	Open in IMG/M
3300012354\|Ga0137366_10387343	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1019	Open in IMG/M
3300012354\|Ga0137366_10910473	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	618	Open in IMG/M
3300012360\|Ga0137375_10126859	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2538	Open in IMG/M
3300012360\|Ga0137375_10427834	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1148	Open in IMG/M
3300012492\|Ga0157335_1021033	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	620	Open in IMG/M
3300012927\|Ga0137416_11171049	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	691	Open in IMG/M
3300012955\|Ga0164298_11002414	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	617	Open in IMG/M
3300012971\|Ga0126369_13445938	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	518	Open in IMG/M
3300012988\|Ga0164306_10842713	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	742	Open in IMG/M
3300013102\|Ga0157371_10119947	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1870	Open in IMG/M
3300013297\|Ga0157378_12881254	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	533	Open in IMG/M
3300013306\|Ga0163162_10957662	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	967	Open in IMG/M
3300013306\|Ga0163162_12685973	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	573	Open in IMG/M
3300014879\|Ga0180062_1011824	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1749	Open in IMG/M
3300014879\|Ga0180062_1104740	Not Available	647	Open in IMG/M
3300015373\|Ga0132257_102370900	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300015374\|Ga0132255_103934239	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	631	Open in IMG/M
3300016270\|Ga0182036_10943679	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300016357\|Ga0182032_11044802	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	699	Open in IMG/M
3300017930\|Ga0187825_10005661	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4166	Open in IMG/M
3300017936\|Ga0187821_10169924	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	829	Open in IMG/M
3300018031\|Ga0184634_10311040	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	723	Open in IMG/M
3300018054\|Ga0184621_10245612	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300018061\|Ga0184619_10122369	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1178	Open in IMG/M
3300018063\|Ga0184637_10492878	All Organisms → cellular organisms → Bacteria → Proteobacteria	713	Open in IMG/M
3300018067\|Ga0184611_1130033	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	886	Open in IMG/M
3300018076\|Ga0184609_10381452	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	657	Open in IMG/M
3300018079\|Ga0184627_10356926	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300018082\|Ga0184639_10508563	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300018476\|Ga0190274_10476026	Not Available	1240	Open in IMG/M
3300018482\|Ga0066669_10454974	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1100	Open in IMG/M
3300019362\|Ga0173479_10211816	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	826	Open in IMG/M
3300025315\|Ga0207697_10143460	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1037	Open in IMG/M
3300025555\|Ga0210121_1070477	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300025911\|Ga0207654_10178555	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1384	Open in IMG/M
3300025917\|Ga0207660_10192668	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1588	Open in IMG/M
3300025918\|Ga0207662_10405463	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	925	Open in IMG/M
3300025919\|Ga0207657_10358623	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1149	Open in IMG/M
3300025926\|Ga0207659_10673160	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	885	Open in IMG/M
3300025932\|Ga0207690_10334801	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1193	Open in IMG/M
3300025971\|Ga0210102_1077528	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	717	Open in IMG/M
3300026307\|Ga0209469_1078861	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	986	Open in IMG/M
3300027533\|Ga0208185_1125947	Not Available	596	Open in IMG/M
3300027695\|Ga0209966_1023200	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1218	Open in IMG/M
3300027840\|Ga0209683_10052629	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1784	Open in IMG/M
3300027840\|Ga0209683_10310306	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300027873\|Ga0209814_10259376	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	754	Open in IMG/M
3300027876\|Ga0209974_10006337	All Organisms → cellular organisms → Bacteria → Proteobacteria	4133	Open in IMG/M
3300027907\|Ga0207428_11229092	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	521	Open in IMG/M
3300027907\|Ga0207428_11311848	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	501	Open in IMG/M
3300027909\|Ga0209382_10116352	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3120	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1096298	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300031548\|Ga0307408_102524773	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300031720\|Ga0307469_11139575	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	735	Open in IMG/M
3300031901\|Ga0307406_12120231	Not Available	504	Open in IMG/M
3300031965\|Ga0326597_11510659	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300032013\|Ga0310906_10676640	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	718	Open in IMG/M
3300033158\|Ga0335077_12015845	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	536	Open in IMG/M
3300034176\|Ga0364931_0321028	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300034354\|Ga0364943_0037424	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1568	Open in IMG/M
3300034417\|Ga0364941_030534	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1144	Open in IMG/M
3300034417\|Ga0364941_043685	Not Available	987	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.69%
Host-Associated	Host-Associated	34.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	45.99%
Plants	Host-Associated → Plants	34.31%
Aquatic	Environmental → Aquatic	19.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.09%
Sediment	Environmental → Aquatic → Sediment	13.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.49%
Freshwater	Environmental → Aquatic → Freshwater	3.65%
Floodplain	Environmental → Terrestrial → Floodplain	2.92%
Marine	Environmental → Aquatic → Marine	2.19%
Roots	Host-Associated → Plants → Roots	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	13.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.03%
Loam	Environmental → Terrestrial → Soil → Loam	5.11%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.65%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.92%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.19%
Sand	Environmental → Terrestrial → Soil → Sand	2.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.46%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.73%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	13.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.49%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.92%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.19%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.19%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.19%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.19%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.19%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.46%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.73%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.73%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.73%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	16.06%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.76%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	8.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.03%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.38%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.65%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.92%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.19%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.19%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.19%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	1.46%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.46%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.46%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.46%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.46%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.73%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.73%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.73%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.73%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.73%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.73%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003991	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqB_D1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011405	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT400_2	Environmental	Open in IMG/M
3300011434	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012173	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012492	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610	Host-Associated	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014879	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10D	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025555	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqB_D1 (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025971	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027840	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_01874830	2140918013	Soil	MMSKAKRLAICFTFIITFAAAAQGQSLPKVRAAYTSIGIQFDPVYIMKELDLSRKHGVDA
F14TC_1014773681	3300000559	Soil	MLHVNRLLAGVVFIASFAAAAQAQSLPKVRAAYTSIGIQFDPVYIMKELDL
JGI11643J11755_117311271	3300000787	Soil	MLRVKQLMIGFAWAVAFAPPAVGQSLPQVRAAYTSIGIQFDPVYIMKELELP
JGI10215J12807_14309272	3300000881	Soil	MSKAKRLAICFTFIITFAAAAQGQSLPKVRAAYTSIGIQFDPVYIMKELDLSRKHGVDAEILF
JGI11615J12901_136308012	3300000953	Soil	MLSSKNWLICFALVLACAVPARGQSLPKARAAYTSIGIQFDPVYIMKELELPRK
JGI10216J12902_1046066242	3300000956	Soil	MFSIRSLLILLAGIIAFAAPVRGQSLPKARAAYTSIGIQFDPVYIMKELE
JGI10216J12902_1094197451	3300000956	Soil	MLRAKCWLILLTVIVAFAVPARGQSLPKVRAAYTSIGIQFDPVYIMKELDLPRKHGLDVE
Ga0055461_102060501	3300003991	Natural And Restored Wetlands	MVKFKSLAIGFAFILICAVAAQGQSLPKVRAAYTSISIQFDPVYIMKELDLPRKYG
Ga0062590_1025673111	3300004157	Soil	MRLKSWVICLSIILFFSPKLHGQNLPKVRAAYTSIGIQFDPVYIMKELDLP
Ga0063356_1012642732	3300004463	Arabidopsis Thaliana Rhizosphere	MSKAKRLAICFTFIITFAAAAQGQSLPKVRAAYTSIGIQFDPV
Ga0063356_1014011692	3300004463	Arabidopsis Thaliana Rhizosphere	MPRAKRWVIGFSLILGFAAAAQGQSLPKVRAAYTSIGIQFDPV
Ga0063356_1023652592	3300004463	Arabidopsis Thaliana Rhizosphere	MLTINRLVICFALIVGFAGVARGQSLPKVRGAYTSIGIQFDPVYIMKELDLPRRHGVDAEILFVPVSSRAVQAALAGEIQFI
Ga0063356_1027609331	3300004463	Arabidopsis Thaliana Rhizosphere	MFGIRSLLILLAGIIAFAAPVRGQSLPKARAAYTSIGIQFDPVYIMKELELPRKHGLDVEVLFVPVS
Ga0062591_1008779911	3300004643	Soil	MKTKNWLICLTLVLLFSPKLQAQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDVLFVPVSSR
Ga0066680_104400711	3300005174	Soil	MLRLRLFTIVGLTAVTLTGVAHAQSLPKIRVAYTSIGIQFDPVYIMKELDLPRKYGVDAEILFVPVSSRAIQAAL
Ga0066684_107571671	3300005179	Soil	MLRVKSLMICFAFIVAFAGAALGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRK
Ga0066676_111292821	3300005186	Soil	MLRLRLFTIVGLTAVTLTGVAHAQSLPKIRVAYTSIGIQFDPVYIMKELDLPRKYGVDAEILFVPVSSRAIQAALAG
Ga0065705_109439962	3300005294	Switchgrass Rhizosphere	MLRVKKLALCFAFIITFTAVAQGQSLPKVRAAYTSIGIQFDPVYI
Ga0066388_1067182051	3300005332	Tropical Forest Soil	MLRVERYAIYFALIVVALADPTQAQSLPKVRAAYTSIGIQFDPFYIMKELDLPRKQGLDVETLFVPVSSRAVQAA
Ga0070660_1002011302	3300005339	Corn Rhizosphere	MRLKQWVTCISLVLLFSAPLYGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDVLFVP
Ga0070708_1009021101	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLGVKRFGVWFAFILCSVGLAQGQNLPKVRAAYTSIGIQFDPVYIMKELDL
Ga0070704_1016359632	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MLRAKRFALCFAFIITFTAAAQGQSLPKVRAAYTSIGIQFD
Ga0066670_108239261	3300005560	Soil	MLRLRKLVICFSVIVTFAAAAPGQNLPKVRAAYTSIGIQ
Ga0066905_1001638092	3300005713	Tropical Forest Soil	VLRVKRFAIYFALMVTALADPAHAQSLPKVRAAYTSIGIQFDPFYIMKELDLPRKQGLDVETLFVPVSSRAVQ
Ga0075432_100630092	3300006058	Populus Rhizosphere	MRIKDFMICVALVLLISPSVHGQSLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDLLFV
Ga0082029_16431512	3300006169	Termite Nest	MRFKKLMICAALVLFVSAGASGQTAPKVRAAYTSIGIQFDPVYIMKDLDLPRKYGLDVDMLFVP
Ga0075422_105119771	3300006196	Populus Rhizosphere	MSRVKRLVICLAFIVAFATAALGQSLPKVRAAYTSIGIQFDP
Ga0097621_1012221901	3300006237	Miscanthus Rhizosphere	MQKSKSLCAVIAVILACAAPALGQTLPKVRAAYTSIGIQFDPVYIMKELDLPRKQGLDVDVLFVPVSSRA
Ga0075421_1014048181	3300006845	Populus Rhizosphere	MRIKDFMICVALVLLISPSVHGQSLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDLLFVPVSSRAIQAA
Ga0075430_1005804661	3300006846	Populus Rhizosphere	MLSGKSLAIGLVLIVTFAAAALGQSLPKVRAAYTSIGIQFDPVYIMKELDLP
Ga0075430_1014476991	3300006846	Populus Rhizosphere	MLRVKKLALCFAFIITFTAVAQGQSLPKVRAAYTSIGIQFDPVYIMKELELPRK
Ga0075431_1020141622	3300006847	Populus Rhizosphere	MMSLKNFIICLVLMIVVAGNAAQAQSLPKVRAAYTSIGIQFDPFYIMKELDLPRKQGLDVETLFVPV
Ga0075433_101926643	3300006852	Populus Rhizosphere	MRIKDFMICVALVLLISPSVHGQSLPKVRAAYTSIGIQFDPVYIMKEL
Ga0075433_112875081	3300006852	Populus Rhizosphere	MRLKQWVTCISLVLLFSVPLYGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDILF
Ga0075433_114521472	3300006852	Populus Rhizosphere	MLRVKRFAICFAVIVVASAGVTQAQSLPKVRAAYTSIGIQFDPVYITKELD
Ga0075433_117164342	3300006852	Populus Rhizosphere	MLRLRKLVICFSVIVTFAAAAQGQNLPKVRAAYTSIGIQFDPVYIMKELNLPRKYGL
Ga0075420_1011772631	3300006853	Populus Rhizosphere	MMRLRKLVICFSVIVTFAAVAQGQNLPKVRAAYTSIGIQFD
Ga0075420_1017511682	3300006853	Populus Rhizosphere	MSKAERLAICFTFIITFAAAAQGQSLPKVRAAYTSIGIQFDPVYIMKELDLSRKHGVDAEILFVPVSSRAVQAALA
Ga0075425_1004745921	3300006854	Populus Rhizosphere	MLRVKRSAICLALIVVASARVAQAQSLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDAEILFVPV
Ga0068865_1021137182	3300006881	Miscanthus Rhizosphere	MLRAKSLAICLAFIVTYTAVALGQSLPKVRAAYTSIGIQFDPVYIMKDLDLPRKYGVDAEILFVPVSSRAVQAALA
Ga0075419_108000341	3300006969	Populus Rhizosphere	MFRVKRFAICFAFVTVAFASAVQAQSLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDAEILFVPVSSRAVQA
Ga0079218_111741621	3300007004	Agricultural Soil	MLSVKGLLIGFAFVIAFATAAVAQSLPKVRAAYTSIGIQFDPVYIMKELDLPRKHG
Ga0099828_102482233	3300009089	Vadose Zone Soil	MLGVKRFGVWFAFILCSVGLAQGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGVAAEILFVPVSSRAVQA
Ga0102851_106757672	3300009091	Freshwater Wetlands	MIMMLKILRWAICAAFMLVGSATAQAQTLPKVRAAYTSISIQFNPVYIMKELNL
Ga0066709_1000240091	3300009137	Grasslands Soil	MSRVKRLVICLASIVTFATAALGQSLPKVRAAYTSIGIQFDPVYIMKELDL
Ga0114129_105321223	3300009147	Populus Rhizosphere	MSRVKRLVICLASIVTFATAALGQSLPKVRAAYTSIGIQFDPVYIMKELDLSRK
Ga0114129_105645753	3300009147	Populus Rhizosphere	MLRVKRSAICLALIVVASAGVAQAQSLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDAEILFVPVSS
Ga0114129_108455452	3300009147	Populus Rhizosphere	MLRVKRFAICFAFIVVASAGVTQAQSLPKVRAAYTSIGIQFDPVYITKELDLPR
Ga0114129_130317891	3300009147	Populus Rhizosphere	MMRLRKLVICFSVIVTFAAVAQGQNLPKVRAAYTSIGIQFDPVYIMKELN
Ga0105242_102735123	3300009176	Miscanthus Rhizosphere	MSRWSPLREMMRLKSWVICLSIILFFSPKLHGQNLPKVRAAYTSIGIQFDPVYIMKEL
Ga0105252_104090381	3300009678	Soil	MIMMLKILRWAICAAFMLVGSAAAQAQTLPKVRAAYTSISIQFTPVYIMKELNLAKKHGLDAEVVFVPVSSRAVQ
Ga0105076_10547671	3300009816	Groundwater Sand	MMSFKNFAICLVLIITVAADAVQGQSLPKVRAAYTSIGIQFDPIY
Ga0105074_10343322	3300010029	Groundwater Sand	MLRVKRFAICLALIVVAFADAAEAQSLPKVRAAYTS
Ga0126384_119301211	3300010046	Tropical Forest Soil	MMSLKYFAVCLALIVMIAGDSAWAQGLPKVRAAYTSIGIQFDPFYIMKELDLPRKQGLDVETLFVP
Ga0126382_109938142	3300010047	Tropical Forest Soil	MFMAKRFAILFVLIVVSADPAQAQSLPKVRAAYTSIGIQFDPFYIMKELDL
Ga0126373_103052113	3300010048	Tropical Forest Soil	MIVNGRTTMFEVARVTLFFFLIVVSAGMARGQSLPKVRAAYTSIGIQFDPVYIMK
Ga0126370_123562582	3300010358	Tropical Forest Soil	MLRVKRFAIYFALVVVAFADAARAQSLPKVRAAYTSIGIQFDPFYIMKELDLPR
Ga0134125_127211492	3300010371	Terrestrial Soil	MGVALIVAFATPALGQSLPKVRAAYTSISIKFDAVYIMKEFNLSRKYGLDAEILFVPVSSRAVQAAL
Ga0126383_125057241	3300010398	Tropical Forest Soil	MLRVKRFAIYFALVVVAFADAARAQSLPKVRAAYTSIGIQFDPFYIMKELDLPRKQG
Ga0134127_100981771	3300010399	Terrestrial Soil	MSRWSPLREMMRLKSWVICLSIILFFNPKLHGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLD
Ga0134122_100064531	3300010400	Terrestrial Soil	MMRLKSWVICLSIILFFSPKLHGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDMLFVPVS
Ga0105246_106735332	3300011119	Miscanthus Rhizosphere	MRLKQWVTCISLVLLFSAPLYGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDVLFVPVSSRAIQ
Ga0137340_10286551	3300011405	Soil	MLRVKIFAICFPIIVVAFAAAAQAQSLPKVRAAYTSIGIQFDPIYIMKERDLARKYGVDAEILFVP
Ga0137464_12746501	3300011434	Soil	MGGTMLSLRSWLICFAVVFVFAAPALTQSLPKARAAYTSIGIQFDPVYIMKELDLTRKYGLDVDMLFV
Ga0137432_11323811	3300011439	Soil	MLRVKRWVIGFSFIVAFATAAQGQSLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGV
Ga0137432_12294831	3300011439	Soil	MLRVKIFAICFAVIVVAFAAAAQAQSLPKVRAAYTSIGIQFDPIYIMKERDLARKYGVDAEILFVPVSSRA
Ga0137437_10125551	3300011442	Soil	MLKLKRLLIGLGTVIAFSGAAQGQSLPKVRAAYTSIGIQFDPVYIMKELDLARKHGVAAEILFVPVSSRAVQA
Ga0137427_100979211	3300011445	Soil	MLRVKKLALCFAFIITFTAVAQGQSLPKVRAAYTSIGIQFDPVYIMKELELPRKYGVDAEILFVPVSSRAV*
Ga0137327_11084882	3300012173	Soil	MLKLKRLLIGLGCVVALADAAQSQTLPKVRAAYTSIGIQFDPVYIMKEL
Ga0137364_114607471	3300012198	Vadose Zone Soil	MLRVKSLMICFAFIVAFAGAAQGQNLPKVRAAYTSIGIQFDPVYIMKELDLGHKYGLDVDML
Ga0137399_105692021	3300012203	Vadose Zone Soil	MSRVKRFAICFAFIVVASAGVAQAQSLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLD
Ga0137399_109641241	3300012203	Vadose Zone Soil	MSRVKRLVIGFALMVALADTAQGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVAVLF
Ga0137374_102695703	3300012204	Vadose Zone Soil	MLSVKRIVICLAFIVAFAALASGQNLPKVRAAYTSIGIQFDPVYIMKELDLSRKYGV
Ga0137376_100362166	3300012208	Vadose Zone Soil	MLRVKSLMICFAFIVAFAGAAQGQNLPKVRAAYTSIGIQFDPV
Ga0137372_100158939	3300012350	Vadose Zone Soil	MLSVKRIVICLAFIVAFAALASGQNLPKVRAAYTSIGIQFDPVYIMKELDLSRKYGVDAEILFVPVSSR
Ga0137366_103873431	3300012354	Vadose Zone Soil	MLSVKRIVICLAFIVAFAALASGQNLPKVRAAYTSIGIQFDPVYIMKELDLSRKYGVDAEILFVPV
Ga0137366_109104732	3300012354	Vadose Zone Soil	MSRVKRLVICFAFIVAFAGAALGQSLPKVRAAYTSIGIQFDPVYIMKELDLSRKYGVDAEILFVPVSSRAVQA
Ga0137375_101268593	3300012360	Vadose Zone Soil	MSRVKRLVICFAFIVAFAGAALGQSLPKVRAAYTSIGIQFDPVYIMKELDLSRKYGVDAEILFVPVSSRAVQAA
Ga0137375_104278341	3300012360	Vadose Zone Soil	MSRVKRLVICLAFIVAFATAALALGQNLPKVRAAYTSIGIQFDPVYIMKELDLSRKHGVDAEILFV
Ga0157335_10210332	3300012492	Arabidopsis Rhizosphere	MKTKNWLICLTLVLLFSPKLQAQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDVLFVPVSSRA
Ga0137416_111710491	3300012927	Vadose Zone Soil	MLRLRKLVICFSVIVTFAAAAPGQNLPKVRAAYTSIGIQFDPVYIM
Ga0164298_110024141	3300012955	Soil	MLRLRKLVICFSVIVTVAAAAQGQNLPKVRAAYTSIGIQFDPVYIMK
Ga0126369_134459382	3300012971	Tropical Forest Soil	MRGQKNPMMSLKYFAVCLALVVMIADDSAWAQGLPKVRAAYTSIGIQFDPFYIMKEL
Ga0164306_108427131	3300012988	Soil	MRLKQWVTCISLVLLFSAPLYGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDVLFVPVSSRAIQA
Ga0157371_101199471	3300013102	Corn Rhizosphere	MMRLKSWVICLSIILFFSPKLHGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDMLFVPVSSRAIQA
Ga0157378_128812542	3300013297	Miscanthus Rhizosphere	VIRDGVTDNWGGTMLRIQRSLMGVALIVAVATPALGQSLPKVRAAYTSISIQFDAVYIMKELNLPRKYGLDAEILFVPVSSRAVQAAL
Ga0163162_109576622	3300013306	Switchgrass Rhizosphere	MSRWSPLREMMRLKSWVICLSIILFFSPKLHGQNLPKVRAAYTSIGIQFDPVYIMKELDL
Ga0163162_126859732	3300013306	Switchgrass Rhizosphere	MGVALIVAFATPALGQSLPKVRAAYTSIGIQFDPVYIMKELELPRKYGVDA
Ga0180062_10118241	3300014879	Soil	MLRVKIFAICFAVIVVAFAAAAQAQSLPKVRAAYTSIGIQFDPIYI
Ga0180062_11047401	3300014879	Soil	MLSVKSFAIGLTFILGLAGMAQGQNLPKVRAAYTSIGIQ
Ga0132257_1023709001	3300015373	Arabidopsis Rhizosphere	MKTKNWLICLTLVLLFSPKLQAQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDILFVPVSSRAIQAAL
Ga0132255_1039342391	3300015374	Arabidopsis Rhizosphere	VIGFVLMVALAGAAQGQSLPKVRAAYTSIGIQFDPVYIMKELDLPRKQGLDVDVLFV
Ga0182036_109436791	3300016270	Soil	MRSKQWITCMTLVLLFGAPLYAQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDVLFV
Ga0182032_110448021	3300016357	Soil	MLRLKRFSIWFTFVVAVSPGIAPAQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGL
Ga0187825_100056617	3300017930	Freshwater Sediment	MSKKRTVAICFAFIVAITAAAQGQNLPKVRAAYTSIGIQ
Ga0187821_101699241	3300017936	Freshwater Sediment	MSRIKTVAICFAFIVAITAAAQGQNLPKVRAAYTSIGIQFDPVYIMKELD
Ga0184634_103110401	3300018031	Groundwater Sediment	MVRVKRFAICLALIVVAFVDAAQGQSLPKVRAAYTSIGIQFDPV
Ga0184621_102456122	3300018054	Groundwater Sediment	LKLKRLVICFAFTLAFGTAALGQSLPKVRAAYTSIGIQFDP
Ga0184619_101223691	3300018061	Groundwater Sediment	MLRVKGLVIGLAFIVAFAAAAQGQSLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDVL
Ga0184637_104928781	3300018063	Groundwater Sediment	MLRVKRLALCFAFIVAFTAAAQGQSLPKVRAAYTSIGIQFDPVYIMKELDLARKHGVDAEILFVPV
Ga0184611_11300332	3300018067	Groundwater Sediment	MSRVKRFAICLALIVVAFADAAQGQSLPKVRAAYTSIGIQFDPVYIMKEL
Ga0184609_103814522	3300018076	Groundwater Sediment	MSRVKRFAICLALIVVAFVDAAQGQSLPKVRAAYTSIGIQFDPVY
Ga0184627_103569261	3300018079	Groundwater Sediment	LRVKGLTISFAFIVAFAAAALGQSLPKVRAAYTSIGIQFDPVYIMKELDLSRKYGVDAEILFVPVSSRAVQ
Ga0184639_105085632	3300018082	Groundwater Sediment	MFKVKRLVICFAFIVAFATAALGQSLPKVRAAYTSIGIQFDPVYIMKELDLSRKYGVD
Ga0190274_104760261	3300018476	Soil	MFGIRSLLILLAGIIAFAAPVRGQSLPKARAAYTSIGIQFDPVYIMKELELPRKHGLDVEVLF
Ga0066669_104549742	3300018482	Grasslands Soil	MLRLRLFTIVGLTAVTLTGVAHAQSLPKIRVAYTSIGIQFDPVYIMKELDLPRKYGVDAEILFVPVSSRAIQAALAGE
Ga0173479_102118162	3300019362	Soil	MRLKSWVICLSIILFFSPKLHGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRK
Ga0207697_101434602	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MSRWIPLREMMRLKSWVICLSIILFFSPKLHGQNLPKVRAAYTSIGIQFDPVYIMKELDL
Ga0210121_10704772	3300025555	Natural And Restored Wetlands	MVKFKSLATGFAFILICAVAAQGQSLPKVRAAYTSISIQFDPVYIMKELDLPRKYGLDTEILFVPVSSRAIQAA
Ga0207654_101785552	3300025911	Corn Rhizosphere	MSRWIPLREMMRLKSWVICLSIILFFNPKLHGQNLPKVRAAYTSIGIQFDPVYIMKEL
Ga0207660_101926681	3300025917	Corn Rhizosphere	MSRWSPLREMMRLKSWVICLSIILFFSPKLHGQNLPKVRAAYTSIGIQFDPVYIM
Ga0207662_104054631	3300025918	Switchgrass Rhizosphere	MRLKSWVICLSIILFFSPKLHGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDMLFVPVSSRA
Ga0207657_103586231	3300025919	Corn Rhizosphere	MRLKQWVTCISLVLLFSAPLYGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYG
Ga0207659_106731602	3300025926	Miscanthus Rhizosphere	MRLKSWVICLSIILFFSPKLHGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDM
Ga0207690_103348012	3300025932	Corn Rhizosphere	MSRWSPLREMMRLKSWVICLSIILFFSPKLHGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVDMLFV
Ga0210102_10775281	3300025971	Natural And Restored Wetlands	MSRAIRFAIWFGVLMIPVAGAAHGQGLPKVRAAYTSIGIQFDPIYIMKEFDLPRKYGLDV
Ga0209469_10788612	3300026307	Soil	LRLRLFTIVGLTAVTLTGVAHAQSLPKIRVAYTSIGIQFDPVYIMKELDLPRKYGVDAEILFVPVSSRAIQAALAGEI
Ga0208185_11259472	3300027533	Soil	MLSLRSWLICFAVVFVFAAPALTQSLPKARAAYTSIGIQFDPVYIMK
Ga0209966_10232001	3300027695	Arabidopsis Thaliana Rhizosphere	MLRTNCLVICCAFIIGFTGAALGQSLPRVRAAYTSIGIQFDPVYIMKELELPRKHGVDAEILFVP
Ga0209683_100526293	3300027840	Wetland Sediment	MLRAGSWLIGLAVGIAFAIPARAQSLPKVRAAYTSISIQFNPVYIMKELDLTRKYGLDVEVL
Ga0209683_103103061	3300027840	Wetland Sediment	MLSVSSWLIGLALVVAFNAPARAQSLPKVRAAYTSISIQFNPVYIMKELD
Ga0209814_102593762	3300027873	Populus Rhizosphere	MLRVKRLVICFAVIVTFVAAAQGQNLPKVRAAYTSIGIQFDPVYIMKELDLSRKY
Ga0209974_100063371	3300027876	Arabidopsis Thaliana Rhizosphere	MLRTNCLVICCAFIIGFTGAALGQSLPRVRAAYTSIGIQFDPVYIMKELELPRKHG
Ga0207428_112290921	3300027907	Populus Rhizosphere	MRLKSWVICLSIILFFSPKLHGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDV
Ga0207428_113118482	3300027907	Populus Rhizosphere	MLRVKRSAICLALIVVASAGVAQAQSLPKVRAAYTSIGIQFDPVYIM
Ga0209382_101163525	3300027909	Populus Rhizosphere	MLRVKRSAICLALIVVAFADAARGQSLPKVRAAYTSIGIQ
(restricted) Ga0255311_10962981	3300031150	Sandy Soil	MSRVKSLVICFAFTLAFAAAALGQTLPKVRAAYTSIGIQFDPVYIMKELDLARKYGVDAEILFVPVSS
Ga0307408_1025247732	3300031548	Rhizosphere	MLKVKGLLIGFAFVVTFAAEALGQSLPKIRAAYTSIGIQFDPVYIMKELELPRKHGVDAEILFVPVSSRA
Ga0307469_111395751	3300031720	Hardwood Forest Soil	MMSLKNFIICLVLMIVVAGNAAQAQSLPKVRAAYTSIGIQFDPFYIMKELDLPRKQGLDVETLFVPVSSR
Ga0307406_121202311	3300031901	Rhizosphere	MLSIRSMVICFAVIIAFAAPVRGQSLPKARAAYTSIGIQFDPVYIMKELELPRKHGLDV
Ga0326597_115106593	3300031965	Soil	MLRVKSLAICFSFIVAFAAPALGQNLPKVRAAYTSIGIQFDPVYIMKEIDLPRKYGVDAEILFVP
Ga0310906_106766402	3300032013	Soil	MLRVKQLLIGFACVVAFAPAAVGQSLPKVRAAYTSIGIQFDPVYIMKELDLPRKHGVDAEILFVPVSSRAV
Ga0335077_120158452	3300033158	Soil	MLRVKRFAIWFVFVVAVSTGIAQAQGLPKVRAAYTSIGIQFDPVYIMKELNLPRKYGLDVEMLFVPV
Ga0364931_0321028_386_514	3300034176	Sediment	MLKLKRLLIGLGCVVAFADAAQGQSLPKVRAAYTSIGIQFDPV
Ga0364943_0037424_1456_1566	3300034354	Sediment	MVRVKRFAICFAIIVVAFADAAEGQSLPKVRAAYTSI
Ga0364941_030534_977_1144	3300034417	Sediment	MRLVIGFALMVALADAAQGQNLPKVRAAYTSIGIQFDPVYIMKELDLPRKYGLDVD
Ga0364941_043685_3_233	3300034417	Sediment	MGGTMLSLRSWLICFAVVFVFAAPALTQSLPKARAAYTSIGIQFDPVYIMKELDLPRKHGLDVEVLFVPVSSRALQA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters