Metagenome / Metatranscriptome Family F056840

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F056840
Family Type	Metagenome / Metatranscriptome
Number of Sequences	137
Average Sequence Length	51 residues
Representative Sequence	QAEIDSCKGSCDASYRISGSANHKLEIVPSCQPKGSGFVCSKVKIVKVY
Number of Associated Samples	116
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.06 %
% of genes near scaffold ends (potentially truncated)	69.34 %
% of genes from short scaffolds (< 2000 bps)	60.58 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (69.343 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (8.759 % of family members)
Environment Ontology (ENVO)	Unclassified (37.956 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (56.204 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 29.87% Coil/Unstructured: 70.13%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF00583	Acetyltransf_1	6.57
PF00440	TetR_N	3.65
PF07883	Cupin_2	3.65
PF13302	Acetyltransf_3	2.19
PF00211	Guanylate_cyc	2.19
PF13738	Pyr_redox_3	2.19
PF00694	Aconitase_C	2.19
PF02823	ATP-synt_DE_N	2.19
PF01909	NTP_transf_2	1.46
PF12120	Arr-ms	1.46
PF08031	BBE	1.46
PF10851	DUF2652	1.46
PF00903	Glyoxalase	1.46
PF07228	SpoIIE	1.46
PF04120	Iron_permease	1.46
PF13527	Acetyltransf_9	1.46
PF13191	AAA_16	1.46
PF00300	His_Phos_1	0.73
PF04185	Phosphoesterase	0.73
PF02786	CPSase_L_D2	0.73
PF01709	Transcrip_reg	0.73
PF13649	Methyltransf_25	0.73
PF08352	oligo_HPY	0.73
PF13683	rve_3	0.73
PF12681	Glyoxalase_2	0.73
PF03575	Peptidase_S51	0.73
PF13460	NAD_binding_10	0.73
PF07995	GSDH	0.73
PF00248	Aldo_ket_red	0.73
PF00067	p450	0.73
PF14300	DUF4375	0.73
PF03176	MMPL	0.73
PF04655	APH_6_hur	0.73
PF01393	Chromo_shadow	0.73
PF00027	cNMP_binding	0.73
PF04075	F420H2_quin_red	0.73
PF13489	Methyltransf_23	0.73
PF13474	SnoaL_3	0.73
PF00106	adh_short	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG0355	FoF1-type ATP synthase, epsilon subunit	Energy production and conversion [C]	2.19
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	2.19
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	1.46
COG0217	Transcriptional and/or translational regulatory protein YebC/TACO1	Translation, ribosomal structure and biogenesis [J]	0.73
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.73
COG2124	Cytochrome P450	Defense mechanisms [V]	0.73
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.73
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.73
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.73
COG3570	Streptomycin 6-kinase	Defense mechanisms [V]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.34 %
Unclassified	root	N/A	30.66 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.34 %
Unclassified	root	N/A	30.66 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.34 %
Unclassified	root	N/A	30.66 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	53.28 %
Unclassified	root	N/A	30.66 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.46 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	50.36 %
Unclassified	root	N/A	30.66 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.46 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.66 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	19.71 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	12.41 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.19 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	2.19 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.46 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.66 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	19.71 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	7.30 %
Actinobacteria bacterium 21-64-8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-64-8	2.19 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.46 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	1.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.46 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.73 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.73 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.66 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	19.71 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.30 %
Actinobacteria bacterium 21-64-8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-64-8	2.19 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.46 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.46 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	0.73 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.73 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.66 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	19.71 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.30 %
Actinobacteria bacterium 21-64-8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-64-8	2.19 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.46 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.46 %
Acidipropionibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Acidipropionibacterium	0.73 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.73 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.66 %
unclassified Gaiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella	19.71 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.30 %
Actinobacteria bacterium 21-64-8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-64-8	2.19 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.46 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.46 %
Acidipropionibacterium virtanenii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Acidipropionibacterium → Acidipropionibacterium virtanenii	0.73 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.73 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.66 %
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	19.71 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.30 %
Actinobacteria bacterium 21-64-8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-64-8	2.19 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.46 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.46 %
Acidipropionibacterium virtanenii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Acidipropionibacterium → Acidipropionibacterium virtanenii	0.73 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.73 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.73 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459006\|GBPF9FW01CQRTK	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	500	Open in IMG/M
2228664021\|ICCgaii200_c0648780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	537	Open in IMG/M
3300000956\|JGI10216J12902_103954632	All Organisms → cellular organisms → Bacteria	5033	Open in IMG/M
3300001139\|JGI10220J13317_11916440	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300004114\|Ga0062593_100203119	All Organisms → cellular organisms → Bacteria	1581	Open in IMG/M
3300004114\|Ga0062593_101207373	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300004156\|Ga0062589_101129399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-64-8	744	Open in IMG/M
3300004157\|Ga0062590_100652279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-64-8	937	Open in IMG/M
3300004480\|Ga0062592_100502121	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300005093\|Ga0062594_100021070	All Organisms → cellular organisms → Bacteria	2736	Open in IMG/M
3300005327\|Ga0070658_11445489	Not Available	596	Open in IMG/M
3300005336\|Ga0070680_100112750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2264	Open in IMG/M
3300005338\|Ga0068868_101595966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	613	Open in IMG/M
3300005367\|Ga0070667_101877485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	564	Open in IMG/M
3300005435\|Ga0070714_100288332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1527	Open in IMG/M
3300005440\|Ga0070705_100243572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1258	Open in IMG/M
3300005445\|Ga0070708_101600149	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300005455\|Ga0070663_100014306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5091	Open in IMG/M
3300005456\|Ga0070678_100412361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1176	Open in IMG/M
3300005518\|Ga0070699_101977607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	533	Open in IMG/M
3300005526\|Ga0073909_10238024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	804	Open in IMG/M
3300005529\|Ga0070741_10138444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2473	Open in IMG/M
3300005530\|Ga0070679_100156795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2251	Open in IMG/M
3300005538\|Ga0070731_10029366	All Organisms → cellular organisms → Bacteria	3731	Open in IMG/M
3300005538\|Ga0070731_10499170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	810	Open in IMG/M
3300005539\|Ga0068853_100566128	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1077	Open in IMG/M
3300005539\|Ga0068853_100853218	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300005542\|Ga0070732_10493237	All Organisms → cellular organisms → Bacteria → Terrabacteria group	742	Open in IMG/M
3300005544\|Ga0070686_101964472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	500	Open in IMG/M
3300005546\|Ga0070696_101103458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	667	Open in IMG/M
3300005563\|Ga0068855_100152039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2631	Open in IMG/M
3300005563\|Ga0068855_100823016	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300005614\|Ga0068856_101779320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	628	Open in IMG/M
3300006102\|Ga0075015_100444958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	738	Open in IMG/M
3300006173\|Ga0070716_100370900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1020	Open in IMG/M
3300006175\|Ga0070712_100249196	All Organisms → cellular organisms → Bacteria	1418	Open in IMG/M
3300006175\|Ga0070712_100878711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	772	Open in IMG/M
3300006575\|Ga0074053_11751285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	615	Open in IMG/M
3300006606\|Ga0074062_12284011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	852	Open in IMG/M
3300006904\|Ga0075424_100855873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	970	Open in IMG/M
3300009090\|Ga0099827_10222112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	1579	Open in IMG/M
3300009094\|Ga0111539_10844473	All Organisms → cellular organisms → Bacteria	1065	Open in IMG/M
3300009098\|Ga0105245_11470112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	732	Open in IMG/M
3300009156\|Ga0111538_11265449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	932	Open in IMG/M
3300009174\|Ga0105241_10011700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6442	Open in IMG/M
3300009174\|Ga0105241_10756797	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300010358\|Ga0126370_11290748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	684	Open in IMG/M
3300010360\|Ga0126372_11280610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	761	Open in IMG/M
3300010360\|Ga0126372_13150737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	512	Open in IMG/M
3300010376\|Ga0126381_101574149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	950	Open in IMG/M
3300011270\|Ga0137391_10206203	All Organisms → cellular organisms → Bacteria	1709	Open in IMG/M
3300012096\|Ga0137389_11831908	All Organisms → cellular organisms → Bacteria → Terrabacteria group	503	Open in IMG/M
3300012496\|Ga0157353_1007110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	845	Open in IMG/M
3300012922\|Ga0137394_10602190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Acidipropionibacterium → Acidipropionibacterium virtanenii	929	Open in IMG/M
3300012960\|Ga0164301_10360121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1003	Open in IMG/M
3300012961\|Ga0164302_10334074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1006	Open in IMG/M
3300012986\|Ga0164304_10037966	All Organisms → cellular organisms → Bacteria	2528	Open in IMG/M
3300013306\|Ga0163162_12252401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	626	Open in IMG/M
3300013772\|Ga0120158_10533943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300015371\|Ga0132258_10415820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3344	Open in IMG/M
3300015374\|Ga0132255_102041320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-64-8	873	Open in IMG/M
3300015374\|Ga0132255_102050871	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300017924\|Ga0187820_1045140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1180	Open in IMG/M
3300017966\|Ga0187776_10554530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	794	Open in IMG/M
3300019873\|Ga0193700_1068689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	528	Open in IMG/M
3300020082\|Ga0206353_10846096	Not Available	744	Open in IMG/M
3300021560\|Ga0126371_10189759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2145	Open in IMG/M
3300024182\|Ga0247669_1017666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1249	Open in IMG/M
3300024232\|Ga0247664_1178093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	503	Open in IMG/M
3300024331\|Ga0247668_1009094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2080	Open in IMG/M
3300025905\|Ga0207685_10506899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	636	Open in IMG/M
3300025909\|Ga0207705_10177471	All Organisms → cellular organisms → Bacteria	1606	Open in IMG/M
3300025916\|Ga0207663_11414951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	560	Open in IMG/M
3300025916\|Ga0207663_11434275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	556	Open in IMG/M
3300025917\|Ga0207660_10551833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	937	Open in IMG/M
3300025918\|Ga0207662_10846882	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300025927\|Ga0207687_10029106	All Organisms → cellular organisms → Bacteria	3714	Open in IMG/M
3300025929\|Ga0207664_10708355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	905	Open in IMG/M
3300025936\|Ga0207670_11701867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	536	Open in IMG/M
3300025939\|Ga0207665_10168065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1582	Open in IMG/M
3300025944\|Ga0207661_10283570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1481	Open in IMG/M
3300025944\|Ga0207661_10317999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1399	Open in IMG/M
3300025960\|Ga0207651_11628277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	581	Open in IMG/M
3300026035\|Ga0207703_11893500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	573	Open in IMG/M
3300026041\|Ga0207639_10492359	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1119	Open in IMG/M
3300026078\|Ga0207702_11938353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	580	Open in IMG/M
3300026088\|Ga0207641_12363173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	531	Open in IMG/M
3300026089\|Ga0207648_11633157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	606	Open in IMG/M
3300026142\|Ga0207698_10258749	All Organisms → cellular organisms → Bacteria	1598	Open in IMG/M
3300027869\|Ga0209579_10288965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	883	Open in IMG/M
3300027869\|Ga0209579_10302827	Not Available	862	Open in IMG/M
3300027894\|Ga0209068_10443972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	744	Open in IMG/M
3300028717\|Ga0307298_10201461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	586	Open in IMG/M
3300031231\|Ga0170824_116703848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1283	Open in IMG/M
3300031544\|Ga0318534_10189218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	1189	Open in IMG/M
3300031938\|Ga0308175_100052993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3519	Open in IMG/M
3300032039\|Ga0318559_10520332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	555	Open in IMG/M
3300032066\|Ga0318514_10795589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	503	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.69%
Host-Associated	Host-Associated	34.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.50%
Plants	Host-Associated → Plants	34.31%
Aquatic	Environmental → Aquatic	2.19%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.87%
Sediment	Environmental → Aquatic → Sediment	1.46%
Roots	Host-Associated → Plants → Roots	1.46%
Freshwater	Environmental → Aquatic → Freshwater	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.99%
Loam	Environmental → Terrestrial → Soil → Loam	16.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.46%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.46%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.73%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.28%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.30%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.46%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.46%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.46%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.73%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	8.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.30%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.11%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.38%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.38%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.19%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.19%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.19%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.19%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.19%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.19%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.19%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.46%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.46%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.46%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.46%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.73%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.73%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.73%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.73%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.73%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
2189573003	Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012496	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024182	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_00283540	2170459003	Grass Soil	KGSCDASFRISGAANHKLEVVPSCQPKGSGFACSKVKIIKVY
L01_00528720	2170459006	Grass Soil	LVGNRGPYRVKAAINSSCKGSCQGSYRISGSANHKLEVIPSCQPKGSGGSSCSNVKIVKL
FE2_04842650	2189573003	Grass Soil	CDASYRISGSANHKLEIVPSCQPKGSGFVCSKVKIVKVY
ICCgaii200_06487802	2228664021	Soil	LDNRGLYRVKAEIDSSCKGNCDASYRLSGSANHKLEIVPSCQPRGSGFVCSKVKIVKVY
JGI10216J12902_1039546321	3300000956	Soil	SACKGSCDASYRISGSANHRLEIVPSCQPKGSGFVCSRVKIVKVY*
JGI10220J13317_119164401	3300001139	Soil	FLANSRPDRVKAEIDSSCKGHCDASLRISGSANHKLEIVPSCRPKGSGFVCSKVKIVKVY
Ga0062593_1002031194	3300004114	Soil	KPLTVLLDNSGLYRVKAEIDSACKGSCDASYRISGSANHRLEIVPSCQPKGSGFVCSRVKIVKVY*
Ga0062593_1012073732	3300004114	Soil	MEHSGLYRVRAEIDSSCKGSCDASYRISGSANHKIELVPSCQPKGSRFVCSGVKIVKVY*
Ga0062589_1011293992	3300004156	Soil	MDSSCKGSCDASYRISGSANHKIELVPSCRPKGSRFVCSGVKIVKVY*
Ga0062590_1006522791	3300004157	Soil	DSSCKGSCDASYRISGSANHKIELVPSCQPKGSRFVCSGVKIVKVY*
Ga0062592_1005021212	3300004480	Soil	MAHSGLYRVRAEIDSSCKGSCDASYRISGSANHKIELVPSCQPKGSRFVCSGVKIVKVY*
Ga0062592_1017922152	3300004480	Soil	CDASYRISGSANHKLEIVPSCQPKGSGFVCSKVKIVKIY*
Ga0062591_1000368311	3300004643	Soil	LQGSCDASYRISGSANHKIELVPSCQPKGSRFVCSGVKIVKVY*
Ga0062594_1000210705	3300005093	Soil	RVKAEIDSACKGSCDASYRISGSANHKLEIVPSCQPKGSGFVCSRVQIVRVY*
Ga0070658_101598464	3300005327	Corn Rhizosphere	SCTASYRISGSANHKLQIVPSCQPKGSRFICSTIKIVKVY*
Ga0070658_114454891	3300005327	Corn Rhizosphere	RLYRVTAEIDSSCKGSCNASYRIAGSADHKLEIVPRCQLKVSGFVCSTIKIVKVY*
Ga0070680_1001127501	3300005336	Corn Rhizosphere	SGLYRVKAEINSTCKGTCATPRYRLSGSANHELEVVPTCQPQDSGFVCSKVKIVKVY*
Ga0068868_1015959662	3300005338	Miscanthus Rhizosphere	VLLDNRGLFRVKAEIDSSCKGSCDASYRISGSANHQLEVVPGCQPKGSGFVCSKVRIVKVY*
Ga0068868_1020315382	3300005338	Miscanthus Rhizosphere	CKGSCDASYRISGSANHKIELVPSCQPKGSRFVCSGVKIVKVY*
Ga0070667_1018774851	3300005367	Switchgrass Rhizosphere	KPLTVLQENSGLYRVKAEIDSACKGSCDASYRISGSANHKLEIVPSCQPKGSGFVCSRVQIVRVY*
Ga0070714_1002883321	3300005435	Agricultural Soil	RVKAEIDSSCKGSCDASYRISGAANHKLQVVPSCQPKGSGFVCSKVKIVKVY*
Ga0070714_1014621692	3300005435	Agricultural Soil	GSCAATYRISGAANHKLEVVPSCQPKGSGFVCSKIRIVKVY*
Ga0070701_106934732	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	CDASLRISGSVNHKLEIVPSCQPKGSGFVCSKVRIVKVY*
Ga0070705_1002435721	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GNSGFYRVKAVIDSSCKGSCAASYRISGSANHKLVVVPSCQPRGSGFVCSKVRIVKVY*
Ga0070708_1016001492	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	ASKPLTVLQSSRGLYRVRAEINASCKGSCAASYRISGSANHKLEVITSCQLKGSGFVCSKVKILKVY*
Ga0070663_1000143061	3300005455	Corn Rhizosphere	LYRVKAEIDSSCKGSCDASYRISGAANHKLQVVPSCQPKGSGFVCSKVKIVKVY*
Ga0070678_1004123611	3300005456	Miscanthus Rhizosphere	LDNSGLYRVKAEIDSACKGSCDASYRISGSANHKLEMVPRCQPKGSGFVCSRVKIVKVY*
Ga0070699_1019776071	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	KAEIDSSCKGSCDASYRISGAANHKLQVVPSCQPKGSGFVCSKVKIVKVY*
Ga0073909_102380241	3300005526	Surface Soil	KPLNVLLDNGGLYRVEAEIDSACKGRCDASYRVSGSANHRLEIVPSCQPKGSGFVCSRVKIVKVY*
Ga0070741_101384446	3300005529	Surface Soil	YRIKAEIDSTCRGSCAAPSYRISGSANHRLEIVPSCKPAGSGIVCSKVRIVKVY*
Ga0070679_1001567953	3300005530	Corn Rhizosphere	RVKAEINSTCKGTCASPGYRLSGSANHELEVVATCQPQGSGFVCSKVKIVKVY*
Ga0070731_100293661	3300005538	Surface Soil	NTGVYRVKAEIDSSCKGTCTASYRISGSANHKLAVVPSCARAGSSYVCSAMKIVRVD*
Ga0070731_104991701	3300005538	Surface Soil	DSTCKGSCAAPRYRISGSAKHKLEVVPSCKPKGSGFVCSKVKIVKIY*
Ga0068853_1005661281	3300005539	Corn Rhizosphere	AEIDSACKGSCDASYRISGSANHKLEIVPSCQPKGSGFVCSRVQIVRVY*
Ga0068853_1008532182	3300005539	Corn Rhizosphere	RLYRVTAEIDSSCKGSCNASYRIAGSADHKLEIVPRCQLKVSGFVCSTIRIVKVY*
Ga0070732_104932372	3300005542	Surface Soil	DSSCKGSCDASYRISGSANHKLEIVPNCQPKGSAFVCSKVKIVKVY*
Ga0070686_1019644721	3300005544	Switchgrass Rhizosphere	TKPLTVLLDESGVYRVKAEIDASCKGSCDASSRISGSANRKLEIVPSCQPKGSGFVCGKVEIVKVY*
Ga0070696_1011034581	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	AEIDSSCDGTCAASYSISGSANHKLEIVPSCRPNGSGFVCSKVKIIKVY*
Ga0068855_1001520395	3300005563	Corn Rhizosphere	EINSTCKGTCATPRYRLSGSANHELEVVPTCQPQDSGFVCSKVKIVKVY*
Ga0068855_1008230161	3300005563	Corn Rhizosphere	PLTVLQRRRGPYVVKAEIDSSCTGRCDASYRISGSADHKLAIIPSCRLERSAFVCSRLKIVEVY*
Ga0068856_1017793202	3300005614	Corn Rhizosphere	RVKAVIDSSCKGSCQASYRLAGSANHKLVVVPSCQPKGSGFVCSKVKIVKVY*
Ga0068870_106748841	3300005840	Miscanthus Rhizosphere	DASYRISGSANHKLEMVPRCQPKGSGFVCSRVKIVKVY*
Ga0075015_1004449581	3300006102	Watersheds	DSSCKGSCDASSRISGSANHKLEIVPSCQPKGSGFVCSKVKIVKVY*
Ga0070716_1003709001	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	CKGSCDASYRISGSANHKLEIVPSCQPKGSGFVCSKVKIVKIY*
Ga0070712_1002491961	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RGLYRVKAEIDSSCKGSCAGSYRISSSANHKLEVIPSCQPKGSGFVCSKVKIVKVY*
Ga0070712_1008787111	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LYRVKAEIDSSCKGNCDASYRIFGAANHKLEVVPSCQPKGSGFVCSKVKIVKIY*
Ga0097621_1012061252	3300006237	Miscanthus Rhizosphere	ASYRISGSANHKLEMVPSCQPKDSGFVCSKVKIVKVY*
Ga0097621_1022228371	3300006237	Miscanthus Rhizosphere	SYRISGSANHKLEMVPRCQPKGSGFVCSRVKIVKVY*
Ga0074053_117512851	3300006575	Soil	EIDSPCNGSCDASYRISGSANHKLEIVPSCQPKGTGFVCSKVRIVKVY*
Ga0074062_122840113	3300006606	Soil	RPSRVKAEIDSSCKGQCAASLRISGSANHKLEIVPSCQPKGSGFVCSKVRIVKVY*
Ga0079222_104967411	3300006755	Agricultural Soil	SYRLSGSANHKLVVAPSCQPKGSGFVCSKVRIVKVY*
Ga0075424_1008558733	3300006904	Populus Rhizosphere	NVLLDNSGLYRVKAAIDSSCKGRCDASYRISGSANHRLEIVPSCERKGSGFVCSRVKIVKVY*
Ga0099827_102221123	3300009090	Vadose Zone Soil	LQENSGLYRVKAEIDSSCKGSCDATYRVSGAANHKLEVVPSCQPKGSGFVCSKVKIVKVY
Ga0111539_108444731	3300009094	Populus Rhizosphere	SSCKGHCDASLRISGSANHKLKIVPSCQPKGSGFVCSKVKIVKVY*
Ga0105245_114701122	3300009098	Miscanthus Rhizosphere	RVKAEIDSACKGSCDASYRISGSANHRLEIVPSCQPKGSGFVCSRVKIVKVY*
Ga0105247_109825461	3300009101	Switchgrass Rhizosphere	CAASYRVSGSANHKLVVVPSCQPRGSGFVCSKVRIVKVY*
Ga0111538_112654491	3300009156	Populus Rhizosphere	LNVLLDNGGLYRVEAEIDSACKGRCDASYRVFGSANHRLEIVPSCERKGSGFVCSRVKIVKVY*
Ga0105241_100117001	3300009174	Corn Rhizosphere	DSSCKGHCDGSLRISGSANHKLEIVPSCQPKGSGFVCSKVRIVKVY*
Ga0105241_107567972	3300009174	Corn Rhizosphere	VKAEIDSSCKGSCDASYRISGAANHKLQVVPSCQPKGSGFVCSKVKIVKVY*
Ga0105249_121584621	3300009553	Switchgrass Rhizosphere	RISGSTNHKLELVPNCQPKGSGFVCSKVKIVKVY*
Ga0126382_122542951	3300010047	Tropical Forest Soil	HASYRISGSANHKLEVVPSCQPKGSAFVCRKVKIVKVY*
Ga0126370_112907482	3300010358	Tropical Forest Soil	LTVFQQNSRPYRVRAVIDSACKGSCDASYRLSGSANHRLEVVPSCQLKGSGFVCRKVKIVKVY*
Ga0126372_112806103	3300010360	Tropical Forest Soil	FQSNSGLYRVKAVVEFPCKGSCNASYRISGSANHKLEVVPSCRPKGSGFVCSKVKIVKVY
Ga0126372_131507371	3300010360	Tropical Forest Soil	TPSRPLTVFQSNSGLYRVRAVIEFPCKGSCHASYRLSGSANHKLEVVPSCQPKGAGFVCSRVKIVKIY*
Ga0134125_120113451	3300010371	Terrestrial Soil	KGSCDASYRISGSANHKLEIVPSCQPKGSGFVCSKIKVVKVY*
Ga0126381_1015741493	3300010376	Tropical Forest Soil	LQNSSGVYRVTAEIDSSCKGGCAASYRISGSANHKLEVIPTCQLKGSGFVCSTVKIVKVY
Ga0134123_102906371	3300010403	Terrestrial Soil	YRISGSANHKLEMVPSCQPKDSGFVCSKVKIVKVY*
Ga0105246_101415251	3300011119	Miscanthus Rhizosphere	SYRISGSANHKLEMVPSCQPKDSGFVCSKVKIVKVY*
Ga0137391_102062033	3300011270	Vadose Zone Soil	VLQENSGLYRVKAEIDSSCKGSCDATYRVSGAANHKLEVVPSCQPKGSGFVCSKVKIVKVY*
Ga0137389_118319081	3300012096	Vadose Zone Soil	LTVLQKSSGLYRVKAEIDSSCKGSCDASYRISGAANHKLEVVPSCQPKGSGFVCSKVKIVKVY*
Ga0157353_10071101	3300012496	Unplanted Soil	TVFLDNRGPYRVKAVIDSSCKGNCGASYRISGSANHKLEIVPSCQPKGSGFVCSRVKIVKVY*
Ga0137394_106021901	3300012922	Vadose Zone Soil	RVKAEIDSSCKGSCDASYRISGAANHKLEVVPSCQPKGSGFVCSKVKIVKVY*
Ga0164299_102853322	3300012958	Soil	GSCDASYRISGAANHKLEVVPSCQPKGSGFVCSKVKIVKVY*
Ga0164301_103601213	3300012960	Soil	LTVLLDNSGLYRVRAEIDSSCKGSCDASYRISGSANHKLEIVPSCQPKGSGFVCSKVKIVKIY*
Ga0164302_103340741	3300012961	Soil	KAEIDSHCRGSCDASYRISGSANHKLEIVPSCQPKGSGFVCGKVKIVKIY*
Ga0164309_111838892	3300012984	Soil	RISGSANHKLEMVPRCQPKGSGFVCSRVKIVKVY*
Ga0164308_111373371	3300012985	Soil	SYRLSGTASHKLVVVPSCQPRGSGFVCSRVKIVKVY*
Ga0164304_100379665	3300012986	Soil	GPYRVKAEIDSSCKGSCAASYRISRSGNHKLEVVPSCQPKSAGFVCSKVKIVKVY*
Ga0164305_113503591	3300012989	Soil	GNCDASYRLSGSANHKLEIVPSCQPRGSGFVCSKVKIVKVY*
Ga0157378_101263434	3300013297	Miscanthus Rhizosphere	CKGSCDASYRISGSANHQLDVVPSCQPKGSGFVCSKVRIVKVY*
Ga0163162_122524011	3300013306	Switchgrass Rhizosphere	TVLLDNSGLYRVKAEIDSACKGSCDASYRISGSANHRLEIVPSCERKGSGLGCSRVKIVKVY*
Ga0120158_105339431	3300013772	Permafrost	QAEIDSCKGSCDASYRISGSANHKLEIVPSCQPKGSGFVCSKVKIVKVY*
Ga0132258_104158206	3300015371	Arabidopsis Rhizosphere	YRVKAEIDSSCKGSCDASYRISGSANHQLEVVPSCQPKGSGFVCSKVRIVKVY*
Ga0132258_123262381	3300015371	Arabidopsis Rhizosphere	QASYRLSGSANHKLEVVPSCQPNGAGFVCSKVEIVKVY*
Ga0132257_1001811121	3300015373	Arabidopsis Rhizosphere	RLSGSANHKLEVVPSCWPKGAGFVCSTVKIVKVY*
Ga0132255_1020413201	3300015374	Arabidopsis Rhizosphere	YRVTAEIDSSCKGSCAASYRISGSANHKLEMVPSCQPKDSGFVCSKVKIVKVY*
Ga0132255_1020508711	3300015374	Arabidopsis Rhizosphere	KAVIDSSCKGNCAASYRLSGSANHKLEIVPSCQPKGSGFVCSKVKIVKVY*
Ga0132255_1054103052	3300015374	Arabidopsis Rhizosphere	AASYRISRPGNHKLEVVPSCQPNGAGFVCSKVEIVKVY*
Ga0187820_10451404	3300017924	Freshwater Sediment	GLYRVKAGIDSSCKGSCDASYRISGSANHKLELIPSCQPKGSGFVCSKVRIVKVY
Ga0187776_105545302	3300017966	Tropical Peatland	GLYRVKAEIDSTCKANCDPPSYRISGSADHRLEVVPSCRPAGSGFVCSKVEIVKVY
Ga0193700_10686892	3300019873	Soil	QNNSGPYRVKAVIDSSCKGSCHASYRLFGSANHKLEVVPSCQPKDSGFVCSKVKVSKVY
Ga0206353_108460961	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	LTVLQRRRGPYVVKAEIDSSCTGRCDASYRISGSADHKLAIIPSCRLERSAFVCSRLKIVEVY
Ga0154015_16964102	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	CKGSCNASYRIAGSADHKLEIVPRCQLKVSGFVCSTIKIVKVY
Ga0126371_101897596	3300021560	Tropical Forest Soil	TVLQNSSGVYRVKAEIDSSCKGGCAASYRISGSANHKLEVIPTCQLKGSGFVCSTVKIVKVY
Ga0247669_10176661	3300024182	Soil	DRVKAEIDSSCKGHCDGSLRISGSANHKLEIVPSCQPKGSGFVCSKVRIVKVY
Ga0247664_11780931	3300024232	Soil	NSGLYVVKAEIGSSCKGRCDASYRISGSANHRLEVIPSCQVKSSSFACSKVKIFKVY
Ga0247668_10090945	3300024331	Soil	IDSSCKGHCDGSLRISGSANHKLEIVPSCQPKGSGFVCSKVRIVKVY
Ga0207685_105068991	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	VKAEIDSSCKGSCAGSYRISGSANHKLQVIPSCQAKGAGFVCSKVKIVKVY
Ga0207705_101774713	3300025909	Corn Rhizosphere	AELDSPCKGTCAASYRISGSVNHKLEIVPSCRLKGSGFVCSRVEFIKVY
Ga0207663_114149512	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	FRVKAEIDSSCKGSCDASYRISGSANHQLEVVPSCQPKGSGFVCSKVRIVKVY
Ga0207663_114342752	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	SSCKGSCAGSYRISSSANHKLEVIPSCQPKGSGFVCSKVKIVKVY
Ga0207660_105518332	3300025917	Corn Rhizosphere	PSRPLTVLLDNSGLYRVKAEIDSACNGSCDASYRISGSANHKLQIVPSCQPRGSRFICSTIKIVKVY
Ga0207662_108468822	3300025918	Switchgrass Rhizosphere	RAEIDSSCKGSCDASYRISGSANHKIELVPSCQPKGSRFVCSGVKIVKVY
Ga0207687_100291061	3300025927	Miscanthus Rhizosphere	RVKAEIDSSCKGSCDASYRISGAANHKLQVVPSCQPKGSGFVCSKVKIVKVY
Ga0207664_107083551	3300025929	Agricultural Soil	DIDSSCKGSCDASYRISGSANHQLNVVPSCQPKGSGFVCSKVRIVKVY
Ga0207706_115840061	3300025933	Corn Rhizosphere	CKGSCDASYRISGSANHKIELVPSCQPKGSRFVCSGVKIVKVY
Ga0207670_117018672	3300025936	Switchgrass Rhizosphere	GFYRVKAVIDSSCKGSCAASYRISGSANHKLVVVPSCQPRGSGFVCSKVRIVKVY
Ga0207665_101680653	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VFLENNRPSRVKAEIDSSCKGNCDASYRISGSANHKLEIVPSCQPKGSGFVCSKVKIVKI
Ga0207661_102835703	3300025944	Corn Rhizosphere	DSACEGSCAAIYRLSGSANHKLVVVPSCQPKGSGFRCSKVKIVKVY
Ga0207661_103179991	3300025944	Corn Rhizosphere	LANSGPYRVRAEVDSCKGSCTASYRISGSANHKLQIVPSCQPKGTRFICSTIKIVKAY
Ga0207667_116355481	3300025949	Corn Rhizosphere	QASYRLAGSANHKLVVVPSCQPKGSGFVCSKVKIVKVY
Ga0207651_116282772	3300025960	Switchgrass Rhizosphere	KPLTVLLDNRRLYRVKAEIDSACKGSCDASYRISGSANHKLEIVPSCQPKGSGFVCSRVQIVRVY
Ga0207712_100749274	3300025961	Switchgrass Rhizosphere	DASYRISGAANHKLQVVPSCQPKGSGFVCSKVKIVKVY
Ga0207703_118935001	3300026035	Switchgrass Rhizosphere	YRVKAEIDSACKGSCDASYRISGSANHKLEMVPRCQPKGSGFVCSRVKIVKVY
Ga0207639_102937643	3300026041	Corn Rhizosphere	AASYRISGSVNHKLEIVPSCRLKGSGFVCSRIEFIKVY
Ga0207639_104923591	3300026041	Corn Rhizosphere	LYRVKAEIDSACKGSCDASYRISGSANHKLEIVPSCQPKGSGFVCSRVQIVRVY
Ga0207639_118617032	3300026041	Corn Rhizosphere	YRILGSANHKLEVVPSCQLKRSGFVCSKVKIVKIY
Ga0207702_119383532	3300026078	Corn Rhizosphere	SKPLTVLLDNRGLFRVKAEIDSSCKGSCDASYRISGSANHQLNVVPSCQPKGSGFVCSKVRIVKVY
Ga0207641_123631731	3300026088	Switchgrass Rhizosphere	SKPLTVLQGNSGLYVVKAEIGSSCKGRCDASYRISGSANHRLEVIPSCQVKGSSFACSKVKIFKVY
Ga0207648_116331571	3300026089	Miscanthus Rhizosphere	DSSCDGTCAASYSISGSANHKLEIVPSCRPNGSGFVCSKVKIIKVY
Ga0207676_116451701	3300026095	Switchgrass Rhizosphere	SYRISGSANHKLEIVPSCQPRGSGFVCSKVKIVKIY
Ga0207698_102587493	3300026142	Corn Rhizosphere	FRVKAQLDSPCKGTCAASYRISGSVNHKLEIVPSCRLKGSGFVCSRVEFIKVY
Ga0209811_103858232	3300027821	Surface Soil	ICAASYRISGSANHKLTVVPSCRRNGSGFVCSNVRIVKVY
Ga0209579_102889651	3300027869	Surface Soil	IDSTCKGSCAAPRYRISGSAKHKLEVVPSCKPKGSGFVCSKVKIVKIY
Ga0209579_103028271	3300027869	Surface Soil	LTVLQSNSGLYRVKVEVDSPCKGGCDASYRIAGSANHKLEVIPSCRLKGSGFVCSKVTIVKVY
Ga0209068_104439721	3300027894	Watersheds	GYRVKAEIDSSCKGSCDASYRISGSANHKLTVVPSCQPSGSGFVCSTVKIVKVY
Ga0307298_102014612	3300028717	Soil	VKAVIDSSCKGSCHASYRLFGSANHKLEVVPSCQPKDSGFVCSKVKVIKVY
Ga0307504_102921661	3300028792	Soil	SYRISGAANHKLKVVPSCQPHGSGFVCSKVKIVKIY
Ga0075394_114489443	3300030969	Soil	ASYRISGSADHKLVIVPSCQPKGSGFVCSKVKIVKVY
Ga0170824_1029840942	3300031231	Forest Soil	GTCDASYRISGSADHKLVIVPSCQPKGSGFVCSKVKIVKVY
Ga0170824_1167038481	3300031231	Forest Soil	PLTVLQENNGLYRVKAEIDSSCKGSCDASYRISGAANHKLEVVPSCQPKGSGFVCSKVKIVKVY
Ga0170820_130051711	3300031446	Forest Soil	SYRISGAANHKLEVVPSCQPKGSGFVCSKVKIVKVY
Ga0318534_101892184	3300031544	Soil	LLDNSGLYRVKAEIDSSCKGRCDASYRISGSANHKLEIDRSCRPKGSGFVCSKVKIVKVY
Ga0310887_106168171	3300031547	Soil	CKGSCAASRRLSGSANHKLEVVPSCWPKGAGFVCSTVKIVKVY
Ga0308175_1000529935	3300031938	Soil	AIDSSCKGSCAASYRISGSANHKLEVIPSCRLKGSGFVCSKVKIVKVY
Ga0318559_105203321	3300032039	Soil	TVLLDNSGLYRVKAEIDSSCKGRCDASYRISGSANHKLEIDRSCQPKGSGFVCSKVKFVKVY
Ga0318514_107955891	3300032066	Soil	RVKAEIDSSCKGGCGASYRISGSADHKLEVVPDCRLKGSVFVCRKLKIVKIY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056840

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences