Metagenome / Metatranscriptome Family F056788

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056788
Family Type	Metagenome / Metatranscriptome
Number of Sequences	137
Average Sequence Length	53 residues
Representative Sequence	MQFWVDLYARDYGGLGVVLAIYFWIAFSSAIIVWAASLAPALAERRNLRRAS
Number of Associated Samples	115
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.22 %
% of genes near scaffold ends (potentially truncated)	91.97 %
% of genes from short scaffolds (< 2000 bps)	92.70 %
Associated GOLD sequencing projects	112
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.241 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (10.219 % of family members)
Environment Ontology (ENVO)	Unclassified (27.737 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.095 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.00% β-sheet: 0.00% Coil/Unstructured: 40.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF06831	H2TH	5.84
PF00583	Acetyltransf_1	2.92
PF00282	Pyridoxal_deC	2.92
PF00072	Response_reg	2.19
PF03631	Virul_fac_BrkB	2.19
PF07883	Cupin_2	2.19
PF13417	GST_N_3	1.46
PF03006	HlyIII	1.46
PF13847	Methyltransf_31	1.46
PF13458	Peripla_BP_6	1.46
PF00106	adh_short	1.46
PF13230	GATase_4	0.73
PF06827	zf-FPG_IleRS	0.73
PF13649	Methyltransf_25	0.73
PF01709	Transcrip_reg	0.73
PF08241	Methyltransf_11	0.73
PF11946	DUF3463	0.73
PF07690	MFS_1	0.73
PF01391	Collagen	0.73
PF04545	Sigma70_r4	0.73
PF00723	Glyco_hydro_15	0.73
PF07366	SnoaL	0.73
PF13365	Trypsin_2	0.73
PF03073	TspO_MBR	0.73
PF13490	zf-HC2	0.73
PF03734	YkuD	0.73
PF00305	Lipoxygenase	0.73
PF07676	PD40	0.73
PF00916	Sulfate_transp	0.73
PF02656	DUF202	0.73
PF07332	Phage_holin_3_6	0.73
PF00528	BPD_transp_1	0.73
PF05496	RuvB_N	0.73
PF00027	cNMP_binding	0.73
PF00903	Glyoxalase	0.73
PF03167	UDG	0.73
PF02674	Colicin_V	0.73
PF05977	MFS_3	0.73
PF03795	YCII	0.73
PF05995	CDO_I	0.73
PF07503	zf-HYPF	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	5.84
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	2.92
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	2.19
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	1.46
COG5553	Predicted metal-dependent enzyme of the double-stranded beta helix superfamily	General function prediction only [R]	0.73
COG0068	Hydrogenase maturation factor HypF (carbamoyltransferase)	Posttranslational modification, protein turnover, chaperones [O]	0.73
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.73
COG3476	Tryptophan-rich sensory protein TspO/CrtK (mitochondrial benzodiazepine receptor homolog)	Signal transduction mechanisms [T]	0.73
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.73
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.73
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.73
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.73
COG2255	Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB	Replication, recombination and repair [L]	0.73
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.73
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.73
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.73
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.73
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.73
COG1286	Colicin V production accessory protein CvpA, regulator of purF expression and biofilm formation	Cell wall/membrane/envelope biogenesis [M]	0.73
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.73
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.73
COG0217	Transcriptional and/or translational regulatory protein YebC/TACO1	Translation, ribosomal structure and biogenesis [J]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.24 %
Unclassified	root	N/A	8.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.24 %
Unclassified	root	N/A	8.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.24 %
Unclassified	root	N/A	8.76 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	37.23 %
Unclassified	root	N/A	8.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.65 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	33.58 %
Unclassified	root	N/A	8.76 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.46 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.73 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.73 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13.87 %
Unclassified	root	N/A	8.76 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1.46 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	1.46 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.73 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.73 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.73 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	9.49 %
Unclassified	root	N/A	8.76 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1.46 %
Nitriliruptorales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales	1.46 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1.46 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.73 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.73 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.73 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.73 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.73 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.49 %
Unclassified	root	N/A	8.76 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	1.46 %
Nitriliruptoraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae	1.46 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	1.46 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.73 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.73 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.73 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.73 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.73 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.49 %
Unclassified	root	N/A	8.76 %
Nitriliruptor	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor	1.46 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	1.46 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	1.46 %
Anaeromyxobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae	0.73 %
Rugosimonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rugosimonospora	0.73 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.73 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.73 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.73 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.49 %
Unclassified	root	N/A	8.76 %
unclassified Nitriliruptor	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → unclassified Nitriliruptor	1.46 %
Paenibacillus mucilaginosus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus mucilaginosus	1.46 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	1.46 %
Rugosimonospora africana	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rugosimonospora → Rugosimonospora africana	0.73 %
Anaeromyxobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	0.73 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.73 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.73 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.73 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.49 %
Unclassified	root	N/A	8.76 %
Nitriliruptor sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → unclassified Nitriliruptor → Nitriliruptor sp.	1.46 %
Paenibacillus mucilaginosus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus mucilaginosus	1.46 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	1.46 %
Rugosimonospora africana	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rugosimonospora → Rugosimonospora africana	0.73 %
Anaeromyxobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	0.73 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.73 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.73 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2035918004\|FACENC_F56XM5W01BA6XD	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
2170459003\|FZ032L002H9BCJ	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	509	Open in IMG/M
2170459014\|G1P06HT01C69OZ	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
2170459017\|G14TP7Y02GI0TW	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → unclassified Nitriliruptor → Nitriliruptor sp.	773	Open in IMG/M
2189573003\|GZIR7W402FHHC0	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
2209111022\|2221220914	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105691258	All Organisms → cellular organisms → Bacteria	1286	Open in IMG/M
3300000650\|AP72_2010_repI_A1DRAFT_1004349	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300000956\|JGI10216J12902_102996366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1300	Open in IMG/M
3300000956\|JGI10216J12902_105148559	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300000956\|JGI10216J12902_113705158	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300002568\|C688J35102_118245837	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300002568\|C688J35102_118410770	All Organisms → cellular organisms → Bacteria → Terrabacteria group	557	Open in IMG/M
3300002568\|C688J35102_119431080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	693	Open in IMG/M
3300002568\|C688J35102_120497882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1119	Open in IMG/M
3300002568\|C688J35102_120764148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1515	Open in IMG/M
3300004114\|Ga0062593_103030834	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300004114\|Ga0062593_103277448	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300005093\|Ga0062594_102560264	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300005175\|Ga0066673_10083593	All Organisms → cellular organisms → Bacteria	1684	Open in IMG/M
3300005332\|Ga0066388_105319049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	653	Open in IMG/M
3300005333\|Ga0070677_10926752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	505	Open in IMG/M
3300005355\|Ga0070671_101843864	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300005436\|Ga0070713_101885883	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300005456\|Ga0070678_100853209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	830	Open in IMG/M
3300005518\|Ga0070699_101320223	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300005535\|Ga0070684_102116099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	531	Open in IMG/M
3300005566\|Ga0066693_10118928	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300005578\|Ga0068854_100868470	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300005617\|Ga0068859_103038913	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300005713\|Ga0066905_101655278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	587	Open in IMG/M
3300005764\|Ga0066903_100052268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4994	Open in IMG/M
3300005764\|Ga0066903_101189549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1414	Open in IMG/M
3300005764\|Ga0066903_102434703	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300006028\|Ga0070717_10160796	All Organisms → cellular organisms → Bacteria	1948	Open in IMG/M
3300006031\|Ga0066651_10176923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1126	Open in IMG/M
3300006049\|Ga0075417_10576833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	570	Open in IMG/M
3300006175\|Ga0070712_101595765	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300006755\|Ga0079222_11116741	Not Available	695	Open in IMG/M
3300006755\|Ga0079222_12246676	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300006755\|Ga0079222_12359479	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300006800\|Ga0066660_10980163	Not Available	681	Open in IMG/M
3300006871\|Ga0075434_100521639	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300006954\|Ga0079219_10058073	All Organisms → cellular organisms → Bacteria	1705	Open in IMG/M
3300009093\|Ga0105240_12329947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	554	Open in IMG/M
3300009147\|Ga0114129_10211443	All Organisms → cellular organisms → Bacteria	2622	Open in IMG/M
3300009156\|Ga0111538_13459593	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300009176\|Ga0105242_11714725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	665	Open in IMG/M
3300009792\|Ga0126374_10266950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1127	Open in IMG/M
3300010325\|Ga0134064_10119869	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300010376\|Ga0126381_100284562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2257	Open in IMG/M
3300010376\|Ga0126381_103049527	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300012198\|Ga0137364_10106164	All Organisms → cellular organisms → Bacteria	1984	Open in IMG/M
3300012198\|Ga0137364_10120155	All Organisms → cellular organisms → Bacteria	1872	Open in IMG/M
3300012198\|Ga0137364_10682203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	775	Open in IMG/M
3300012200\|Ga0137382_10062474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2361	Open in IMG/M
3300012212\|Ga0150985_120528422	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300012285\|Ga0137370_10285554	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300012478\|Ga0157328_1012651	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300012957\|Ga0164303_10146541	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300012958\|Ga0164299_10596829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	754	Open in IMG/M
3300012958\|Ga0164299_11216331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	571	Open in IMG/M
3300012960\|Ga0164301_10598760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	813	Open in IMG/M
3300012961\|Ga0164302_11251095	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300012971\|Ga0126369_10803946	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300012971\|Ga0126369_13485991	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300012972\|Ga0134077_10512993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rugosimonospora → Rugosimonospora africana	532	Open in IMG/M
3300012984\|Ga0164309_10109405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1762	Open in IMG/M
3300012984\|Ga0164309_11126326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	654	Open in IMG/M
3300012988\|Ga0164306_10750227	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300013296\|Ga0157374_12061235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → unclassified Nitriliruptor → Nitriliruptor sp.	597	Open in IMG/M
3300013307\|Ga0157372_13026404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	537	Open in IMG/M
3300013308\|Ga0157375_11989543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	691	Open in IMG/M
3300013308\|Ga0157375_12139677	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300014157\|Ga0134078_10194167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	824	Open in IMG/M
3300014326\|Ga0157380_12721418	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300014497\|Ga0182008_10746594	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300014969\|Ga0157376_12061153	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300015357\|Ga0134072_10141982	All Organisms → cellular organisms → Bacteria → Terrabacteria group	782	Open in IMG/M
3300015371\|Ga0132258_10627063	All Organisms → cellular organisms → Bacteria	2702	Open in IMG/M
3300015372\|Ga0132256_100654538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1166	Open in IMG/M
3300015372\|Ga0132256_101591410	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300016294\|Ga0182041_11466234	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300016341\|Ga0182035_10831096	Not Available	812	Open in IMG/M
3300017654\|Ga0134069_1292962	All Organisms → cellular organisms → Bacteria → Terrabacteria group	575	Open in IMG/M
3300017944\|Ga0187786_10121626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	908	Open in IMG/M
3300017947\|Ga0187785_10304692	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300017966\|Ga0187776_11165659	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300017966\|Ga0187776_11519197	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300017974\|Ga0187777_10270278	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300018060\|Ga0187765_10290024	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300018431\|Ga0066655_11448543	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300018433\|Ga0066667_12109349	Not Available	522	Open in IMG/M
3300020070\|Ga0206356_11330693	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300021445\|Ga0182009_10448183	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300021478\|Ga0210402_10778538	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300022467\|Ga0224712_10519290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	577	Open in IMG/M
3300024179\|Ga0247695_1006661	All Organisms → cellular organisms → Bacteria	1646	Open in IMG/M
3300025900\|Ga0207710_10150689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1128	Open in IMG/M
3300025915\|Ga0207693_11148463	Not Available	588	Open in IMG/M
3300025917\|Ga0207660_10015411	All Organisms → cellular organisms → Bacteria → Proteobacteria	5044	Open in IMG/M
3300025918\|Ga0207662_11156938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550	Open in IMG/M
3300025923\|Ga0207681_10283722	All Organisms → cellular organisms → Bacteria	1305	Open in IMG/M
3300025924\|Ga0207694_10957353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	724	Open in IMG/M
3300025931\|Ga0207644_10482494	All Organisms → cellular organisms → Bacteria → Proteobacteria	1021	Open in IMG/M
3300025938\|Ga0207704_10410805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1071	Open in IMG/M
3300025944\|Ga0207661_11672735	Not Available	582	Open in IMG/M
3300026078\|Ga0207702_10245775	All Organisms → cellular organisms → Bacteria	1678	Open in IMG/M
3300026078\|Ga0207702_11571946	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	651	Open in IMG/M
3300026310\|Ga0209239_1272912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	583	Open in IMG/M
3300028718\|Ga0307307_10222583	Not Available	600	Open in IMG/M
3300028802\|Ga0307503_10711413	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300031543\|Ga0318516_10258265	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300031564\|Ga0318573_10818699	Not Available	500	Open in IMG/M
3300031572\|Ga0318515_10712131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	531	Open in IMG/M
3300031640\|Ga0318555_10032940	All Organisms → cellular organisms → Bacteria	2537	Open in IMG/M
3300031679\|Ga0318561_10597251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus mucilaginosus	608	Open in IMG/M
3300031716\|Ga0310813_11626945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	604	Open in IMG/M
3300031740\|Ga0307468_100559838	Not Available	923	Open in IMG/M
3300031779\|Ga0318566_10618449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300031781\|Ga0318547_11078130	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300031794\|Ga0318503_10176867	Not Available	690	Open in IMG/M
3300031880\|Ga0318544_10358529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus mucilaginosus	566	Open in IMG/M
3300031897\|Ga0318520_10069510	All Organisms → cellular organisms → Bacteria	1906	Open in IMG/M
3300031912\|Ga0306921_11140737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	871	Open in IMG/M
3300031942\|Ga0310916_10936543	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300032008\|Ga0318562_10368027	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300032074\|Ga0308173_11167660	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300032076\|Ga0306924_10853009	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300032174\|Ga0307470_10696352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	774	Open in IMG/M
3300032261\|Ga0306920_100886574	All Organisms → cellular organisms → Bacteria	1305	Open in IMG/M
3300032893\|Ga0335069_10368299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1693	Open in IMG/M
3300032954\|Ga0335083_10752767	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300032955\|Ga0335076_10084269	All Organisms → cellular organisms → Bacteria	3116	Open in IMG/M
3300033412\|Ga0310810_10637846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1011	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.64%
Host-Associated	Host-Associated	21.90%
Engineered	Engineered	1.46%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.64%
Plants	Host-Associated → Plants	21.90%
Solid Waste	Engineered → Solid Waste	1.46%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.57%
Grass	Engineered → Solid Waste → Grass	1.46%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.74%
Loam	Environmental → Terrestrial → Soil → Loam	14.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.30%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.38%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.46%
Composting	Engineered → Solid Waste → Grass → Composting	1.46%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.06%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.03%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.30%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.57%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.11%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.46%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	1.46%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.11%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.11%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.38%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.19%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.19%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.19%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.19%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.19%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.46%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	1.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.46%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.46%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.46%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.46%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	1.46%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.73%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.73%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.73%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035918004	Soil microbial communities from sample at FACE Site 2 North Carolina CO2-	Environmental	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459014	Litter degradation PV2	Engineered	Open in IMG/M
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
2189573003	Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000650	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A1	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012478	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.9.old.080610	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024179	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCA_2155850	2035918004	Soil	MLISSYVMEFWVNLYARDCGGFGVVLAIYFWVLFSSGIIVWAASLSPALTERRKLRRR
E4A_01122690	2170459003	Grass Soil	SSYVMEFWVNLYARDYGGLGVVLALYFWIAFSSAAIIVAVSVEPAIAERRKLRRSS
2PV_00768160	2170459014	Switchgrass, Maize And Mischanthus Litter	MIVSSYVMEFWVNLYARDYGGLGVVLAIYFWIAFSSAVIVLAASLSPSLAERRNLRRRS
4ZMR_00562490	2170459017	Switchgrass, Maize And Mischanthus Litter	MEFWVNLYARDYGGLGVVLAIYFWIAFSSAVIVGAASLSPSLAERRNLRRS
FE2_00713810	2189573003	Grass Soil	LNFYASDYGGLGVVMAIFFWVAFSSAVVVMAASLAPALAQRRSIRAPS
2222069108	2209111022	Grass Soil	QYWVDLYARDYGGFGVVLAIYFWIAFSSAIIVWAASLSPALAERRTVRRGSRT
INPhiseqgaiiFebDRAFT_1056912583	3300000364	Soil	ARDYGGFGVVMAIFFWIVFISAIIVWAASLSPAPAQRRNLRQPLRR*
AP72_2010_repI_A1DRAFT_10043492	3300000650	Forest Soil	LMVISRFVMPFWIDLYARDYGGLGVVLAIYFWIAFSSAIIVWAASLSPALADRRERRRSL
JGI10216J12902_1029963662	3300000956	Soil	FWVDLYARDYGGLGVVLALYFWLAFCSAIIVWAASLSPALADRREQRRAS*
JGI10216J12902_1051485592	3300000956	Soil	LYARDYGGLGVVLAIYFWILFSSAVIVWAAALSPALADRRAARVRG*
JGI10216J12902_1137051582	3300000956	Soil	IDLYARDYGGLGVVLALYFWIAFSSAIIVWTASLSPALADRRERRRSL*
C688J35102_1182458372	3300002568	Soil	VSSFVMEFWINLYARDYGGFGVVLAIYFWLAFSSFVIVAAASLGPALTQRRTRS*
C688J35102_1184107701	3300002568	Soil	IVSSWVMELWIDFYARDYGGFGVVMAIYFWIGFSSFVIVASAALSPALAERRELRDGRQA
C688J35102_1194310801	3300002568	Soil	MEWWINWYALDYGGFGVVMAIFFWLALSSTLIVWAASLAPVLGERRALRALL*
C688J35102_1204978822	3300002568	Soil	VMQYWIDLYANDYGGLGVVLAIYFWIAFSSAVIVGAASLSPALAVRRSVRAQQRASSAST
C688J35102_1207641482	3300002568	Soil	QYWVDLYARDYGGLGVVLAIYFWIAICSGIIVWAASLSPALAERREVRSGASVDTAA*
Ga0062593_1030308342	3300004114	Soil	WVNFYARDYGGFGVILAIYFWLAFSSAVIVSAASLSPVLAERRELRKGSANSLPRR*
Ga0062593_1032774483	3300004114	Soil	MVDFYARDYGGFGVVLAIYFWILFSSALIVAAASLSPALAERRNRRAAAP
Ga0062594_1025602641	3300005093	Soil	LWVDFYARDYGGFGVVMAIYFWLGFSSFVIVAAASISPVLAERRALRAGAS*
Ga0066673_100835932	3300005175	Soil	MEPWVDLYARDYGGFGVVLALYFWIAFSSAVIVWAAALAPALAQRRAASITLP*
Ga0066388_1053190491	3300005332	Tropical Forest Soil	LMLVSRYVMQFWVDLYAKDYGGLGVVLAIYFWLALCSAVIVWAASISPALAVRRDLRRR*
Ga0070677_109267521	3300005333	Miscanthus Rhizosphere	LMVISSFVMELWVNLYARDYGGFGVVLAIYFWILFSSGIIVWAASLSPALAERRDLRQRP
Ga0070671_1018438643	3300005355	Switchgrass Rhizosphere	VMELWINLYARDYGGFGVVLAIYFWILSSSAVIVWAASLSPALAERRDVRRGGT*
Ga0070713_1018858832	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LYARDYGGLGVVLAIYFWIAFSSAVIVWAASLSPALAERREARMTA*
Ga0070678_1008532092	3300005456	Miscanthus Rhizosphere	FVMQFWVDLYARDYGGFGVVLAIYFWIAFSSAVIVGAASLSPALAARRSLRAERASSAAT
Ga0070699_1013202232	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VDFYARDYGGFGVILAIYFWILLCSGVIVWAASLSPSLAARRDLRRGRS*
Ga0070684_1021160992	3300005535	Corn Rhizosphere	VSSYVMEFWVNLYARDYGGLGVVLAIYFWILFSSGLIVGTASLSPALAERRRRHA*
Ga0066693_101189282	3300005566	Soil	WVDLYARDYGGLGVVLAIYFWIAFSSALIVGTATLSPALADRRNLPRRL*
Ga0068854_1008684701	3300005578	Corn Rhizosphere	LYARDYGGLGVVLALYFWIAFSSAVIVWAAALAPALAQRRAGTRYAP*
Ga0068859_1030389131	3300005617	Switchgrass Rhizosphere	VSSHVMQFWVDFYARDYGGFGVILAIYFWILLCSGVIVWAASLSPSLAARRDLRRGRS*
Ga0066905_1016552782	3300005713	Tropical Forest Soil	MLISSYVLEFWIDLYAKDYGGFGVVMAIFFWIAFSSAVIVFAAGASPALAERRRVRRETV
Ga0066903_1000522681	3300005764	Tropical Forest Soil	MLVSRYVMQFWIDLYARDYGGLGVVLAIYFWIAFSSALIVWTASLAPALAERRNLRRAP*
Ga0066903_1011895491	3300005764	Tropical Forest Soil	YVMQFWVDLYAKDYGGLGVILAIYFWLALSSAVIVWAASLSPALAARRDLRRR*
Ga0066903_1024347031	3300005764	Tropical Forest Soil	SRYVMQFWVDLYARDYGGLGVVLAIYFWIAFSSAVIVWSASIAPALAERREFRRLLAPGAGARTDHS*
Ga0070717_101607961	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	FVMPLWVDLYARDYGGLGVVLAMYFWLAFSSATIVMAASISPALAARRAARSA*
Ga0066651_101769231	3300006031	Soil	LYARDYGGFGVVLALYFWIAFSSAVIVWAAALAPALAQRRAASITLP*
Ga0075417_105768332	3300006049	Populus Rhizosphere	VMEPWVDLYARDYGGFGVVLAIYFWLLFSSGVIVWAAAVAPALAQRRASTGRTARR*
Ga0070712_1015957652	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VLMFVSRYLMQYWLDLYSRDYGGFGVVLAIYFWIAFSSALIVWAASLSPALAARRDARAR
Ga0079222_111167411	3300006755	Agricultural Soil	NWYALDYGGFGVVMAMFFWFAFGSAAIVWAASLAPGLAQRRALRTSTKEN*
Ga0079222_122466763	3300006755	Agricultural Soil	SSYVMEPWVDLYARDYGGFGVVLALYFWILFSSAVIVWAAALAPALAQRRALR*
Ga0079222_123594791	3300006755	Agricultural Soil	LNFYARDYGGFGVVMAIFFWIAISAAIVVWAAAMSPALAERRRLRP*
Ga0066660_109801631	3300006800	Soil	SAVMQYWVDLYAKDYGGLGVVLAIYFWIAFSAAVIVIAASLAPSLAQRRTLGRAAKESLSTGT*
Ga0075434_1005216391	3300006871	Populus Rhizosphere	FVMEPWVDLYARDYGGFGVVMAMFFWLGFSSAVIVWAAALSPALAQRRSLREQAAPA*
Ga0079219_100580733	3300006954	Agricultural Soil	LSSYVMEFWVNWYARDYGGFGVVLAIYFWILLSSGLIIWAASISPALAQRRAARRER*
Ga0105240_123299472	3300009093	Corn Rhizosphere	MELWVNLYARDYGGFGVVLAIYFWILFSSGIIVWAASLSPALAERRDLRQRP*
Ga0114129_102114434	3300009147	Populus Rhizosphere	MLISSYVMEFWVNFYARDYAGFGVVLAIYFWVLFSSGIIVWAASLSPALAERRKLRRRP*
Ga0111538_134595931	3300009156	Populus Rhizosphere	RVIFQFWINLYARDYGSFGGVMAIYFWILFSAGVIVGAASLSPALAARRKLRAARQAPATPSQTAG*
Ga0105242_117147252	3300009176	Miscanthus Rhizosphere	LYARDYGGFGVVMAIFFWIAISSAIVVWATAVSPPLAARRAARG*
Ga0126374_102669501	3300009792	Tropical Forest Soil	MIVSSYVMEPWVDFYARDYGGFGVVMAIFFWIGFSSFVIVASACVGPALARRRELRRA*
Ga0134064_101198691	3300010325	Grasslands Soil	LVSRYVMQYWVDLYARDYGGLGVVLAIYFWIAFSSALIVGTASLSPALADRRNLSRRL*
Ga0126381_1002845623	3300010376	Tropical Forest Soil	YARDYGGFGVVMAIFFWIGFSSFVIVASACLGPAFARRRERRA*
Ga0126381_1030495271	3300010376	Tropical Forest Soil	LMVVSRYVMQFWVDLYARDYGGFGVVLAIYFWLAFSSALIVWAASLSPALAARREFRRDA
Ga0137364_101061644	3300012198	Vadose Zone Soil	SSFVMELWVNLYARDYGGFGVVLAIYFWILFSSGVIVWGASLSPALAERRDLRQRR*
Ga0137364_101201554	3300012198	Vadose Zone Soil	VSRYVMQFWVNLYAKDYGGLGVVLAIYFWIALCAGIIVWAASLSPALAERREARSSASVGG*
Ga0137364_106822031	3300012198	Vadose Zone Soil	WINFYARDYGGFGVVMAIFFWIAFSSFVIVAAASLAPALAERRDLHEP*
Ga0137382_100624743	3300012200	Vadose Zone Soil	FVMQFWVDLYARDYGGFGVVLAIYFWIAFSSAVIVGAASLSPALAARRSLRAERASSAST
Ga0150985_1205284221	3300012212	Avena Fatua Rhizosphere	VSSYVMEPWVDLYARDYGGFGVVLAIYFWLLFSSGVIVWAAAVAPALAQRRASTARTARR
Ga0137370_102855543	3300012285	Vadose Zone Soil	WVDLYARDYGGLGVVLAIYFWIAICSGIIVWAASLSPALAERREARSSASVGG*
Ga0157328_10126511	3300012478	Arabidopsis Rhizosphere	WVDLYARDYGGFGVVLAIYFWLAFSSAVIVWAAAVSPALAQRRSAAS*
Ga0164303_101465411	3300012957	Soil	DLYARDYGGFGVVLAIYFWIAFSSAVIVCAASLSPALAARRSLRAERASSAAT*
Ga0164299_105968292	3300012958	Soil	DLYARDYGGFGVVLAIYFWIAFSSAVIVGAASLSPALAARRSLRAERASSAAT*
Ga0164299_112163311	3300012958	Soil	LYARDYGGLGVVLAIYFWLLFSSGLIVASASLSPALAMRRNRRRRPQTEP*
Ga0164299_113528432	3300012958	Soil	LWVDLYARDYGGFGVVMAIFFWILFSSAIIVGAASLSPALAERRRLRGHSRPAR*
Ga0164301_105987603	3300012960	Soil	AMERWLNFYARDYGGFGVVMATFFWIALSSAIVVWAAAMSPALAERRRLRS*
Ga0164302_112510952	3300012961	Soil	YVMEPWIDLYARDYGGFGVVLALYFWIAFSSAVIVWAASISPSLAERREFRQES*
Ga0126369_108039462	3300012971	Tropical Forest Soil	DFYAKDYGGFGVVLAIYFWIAFSSAAIVWAASLSPALAERREQRHQPGRAES*
Ga0126369_134859912	3300012971	Tropical Forest Soil	FWVDLYARDYGGFGVVLAIYFWLALSSGVIVWAASLAPALAERRELQALVSG*
Ga0134077_105129932	3300012972	Grasslands Soil	YARDYGGFGVVLAIYFWILFSSGVIVWGASLSPALAERRDIRRRP*
Ga0164309_101094051	3300012984	Soil	MQFWVDLYARDYGGFGVVLAIYFWIAFSSAVIVGAASLSPALAARRSLRAERESSAAT*
Ga0164309_111263262	3300012984	Soil	SVAMERWLNFYARDYGGFGVVMATFFWIALSSAIVVWAAAMSPALAERRRLRS*
Ga0164306_107502271	3300012988	Soil	FWVDLYARDYGGLGVILAIYFWIAFSSAVIVWAASLAPALAERRNHRRA*
Ga0157374_120612352	3300013296	Miscanthus Rhizosphere	VMEFWINLYARDYGGLGVVLAIYFWIAFSSAVIVGAASLSPSLAERRNLRRI*
Ga0157372_130264041	3300013307	Corn Rhizosphere	NFVMQYWVDLYARDYGGLGVVLAIYFWIAFSSAVIVAAASLSPALAARRAFRAEQRAPSATT*
Ga0157375_119895432	3300013308	Miscanthus Rhizosphere	WVDFYARDYGGFGVILAIYFWILLCSGVIVWAASLSPSLAARRDLRCGRS*
Ga0157375_121396772	3300013308	Miscanthus Rhizosphere	WVNLYARDYGGFGVVLAIYFWILFSSGIIVWAASLSPALAERRDLRQRR*
Ga0134078_101941671	3300014157	Grasslands Soil	SNFVMEYWINLYARDYGGLGVVLAIYFWIAFSSAVIVGAASLSPALAVRRSVRAQERASSAST*
Ga0157380_127214181	3300014326	Switchgrass Rhizosphere	LYARDYGGFGVVLAIYFWLLFSSGVIVWAASLSPALAERCELRRRS*
Ga0182008_107465942	3300014497	Rhizosphere	YARDYGGLGVVLAIYFWLAISSAIVVWAASLSPALADRRNLRRLLAEP*
Ga0157376_120611531	3300014969	Miscanthus Rhizosphere	WVDFYARDYGGFGVVMAIFFWIAIISAVIVWAASLSPALAQRRNLRAGDQ*
Ga0134072_101419822	3300015357	Grasslands Soil	FYARDYGGFGVVMAIYFWIGFSSFVIVASAALSPALAERRELRDGRQA*
Ga0132258_106270634	3300015371	Arabidopsis Rhizosphere	MAFWVDLYARDYGGLGVVLAIYFWIAFSSAVIVWAASLSPALAERRNVRIQA*
Ga0132256_1006545383	3300015372	Arabidopsis Rhizosphere	FWGDLYARDYGGLGVVLAIYFWIAFSSAVIVWAASLSPALAERREARMTA*
Ga0132256_1015914102	3300015372	Arabidopsis Rhizosphere	PWVDLYAKDYGGFGVVMAIFFWLAFSSALIVGAAAISPALAERRALRRRPEATATA*
Ga0182041_114662341	3300016294	Soil	VSRYLMQFWIDLYAADYGGLGVVLAIYFWLAFSSGAIVWAAALSPALAARREFRRNA
Ga0182035_108310963	3300016341	Soil	YVMQLWLDLYARDYGGFGVVMAIYFWLTFSSAVIVWAAAISPALAQRRELRR
Ga0134069_12929622	3300017654	Grasslands Soil	WVNFYARDYGGLGVVMAIFFWIALSSAVIVWAASLAPALAQRRSLR
Ga0187786_101216262	3300017944	Tropical Peatland	FYASDYGGFGVVMALFFWIAFTSAVIVWAASLSPALAERRNLRQRS
Ga0187785_103046922	3300017947	Tropical Peatland	YWVDLYARDYGGFGVVLAIYFWLLFTAGTIVWAAALSPALAERRHRREGR
Ga0187776_111656592	3300017966	Tropical Peatland	VMQFWVDLYANDYGGLGVILAIYFWLALSSAVIVWAASLSASLSERRTLRQTPP
Ga0187776_115191972	3300017966	Tropical Peatland	MEPWVDLFAEDYGGFGVVMAIFFWVAFSSAVIVGAASASPALAERRELRRTSAESPVP
Ga0187777_102702781	3300017974	Tropical Peatland	LMIVSRYLMQFWVDLYARDYGGLGVVLAIYFWIAFSSGTIVWAASLSPALAERRAFRRGS
Ga0187765_102900242	3300018060	Tropical Peatland	LMLVSSFAMEPWIDFYARDYGGFGVVMAIFFWIALSSALIVGAASVSPGLAERRRLRAGP
Ga0187774_101130503	3300018089	Tropical Peatland	AKDYGGLGVILAIYFWIALCSAIIVWAASLSPALAVRRDLRRAL
Ga0066655_114485432	3300018431	Grasslands Soil	MLASSYVMQFWVDLYARDYGGFGVVLAIYFWIAFSSALIVGTATLSPALAERRNLPRRV
Ga0066667_121093492	3300018433	Grasslands Soil	VVLIWISRFVMEFWINFYARDYGGFGVVMAIFFWIAFSSFVIVAAASLAPALAERRDLHE
Ga0206356_113306932	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	VVLMIVSRWVLELWVNLYAADYGGFGVVMAFFFWIAFSAFTVVASATLAPVLAERRRA
Ga0182009_104481832	3300021445	Soil	FWVDLYARDYGGFGVVLAIYFWIAFASALIVWTASLAPALAERRRLRRGSP
Ga0210402_107785382	3300021478	Soil	WVDLYAQDYGGFGVILAIYFWILLSSGVIVWAASLSPSLAARRDLRRGRP
Ga0224712_105192902	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	RWVLELWVNLYAADYGGFGVVMAFFFWIAFSAFTVVASATLAPVLAERRRA
Ga0247695_10066614	3300024179	Soil	RYVMAFWVDLYARDYGGLGVVLAIYFWIAFSSAVIVWAASLSPALAERREARMTA
Ga0207710_101506892	3300025900	Switchgrass Rhizosphere	HVMQFWVDFYARDYGGFGVILAIYFWILLCSGVIVWAASLSPSLAARRDLRRGRS
Ga0207693_111484631	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LASNHVMQFWVDFYARDYGGFGVVLAIYFWIAISSAIIVWAASLSPALADRRNLRRLLSE
Ga0207660_100154111	3300025917	Corn Rhizosphere	NLYARDYGGFGVVLAIYFWILFSSGIIVWAASLSPALAERRDVRQRR
Ga0207662_111569381	3300025918	Switchgrass Rhizosphere	NFVMQFWVDLYARDYGGFGVVLAIYFWIAFSSAVIVGAASLSPALAARRSLRAERASSAA
Ga0207681_102837223	3300025923	Switchgrass Rhizosphere	FVMELWVNLYARDYGGFGVVLAIYFWILFSSGIIVWAASLSPALAERRDLRQRP
Ga0207694_109573532	3300025924	Corn Rhizosphere	NLYARDYGGFGVVLAIYFWILFSSGIIVWAASLSPALAERRDLRQRP
Ga0207644_104824941	3300025931	Switchgrass Rhizosphere	SDVMELWINLYARDYGGFGVVLAIYFWILSSSAVIVWAASLSPALAERRDVRRGGT
Ga0207704_104108051	3300025938	Miscanthus Rhizosphere	FYARDYGGFGVILAIYFWILLCSGVIVWAASLSPSLAARRDLRRGRS
Ga0207661_116727352	3300025944	Corn Rhizosphere	MLLSSYVMQFWVNWYARDYGGFGVVLAIYFWILLSSGLIIWAAALSPALAQRRAARRAQ
Ga0207702_102457751	3300026078	Corn Rhizosphere	LWINLYARDYGGFGVVLAIYFWILSSSAVIVWAASLSPALAERRDVRRGGA
Ga0207702_115719461	3300026078	Corn Rhizosphere	YARDYGGLGVVLAISFWIALSSGVIVLAASLSPALAQRRDLRSEESLRSSA
Ga0209239_12729121	3300026310	Grasslands Soil	YARDYGGFGVVLAIYFWILFSSGIIVWAASLSPALAERRDLRRRP
Ga0307307_102225833	3300028718	Soil	MEFWINFYARDYGGFGVVMAIFFWIAFSSFVIVTSASLAPAVA
Ga0307503_107114131	3300028802	Soil	WVDLYARDYGGFGVVLAIYFWIAFSSALIVGTATLSPALAERRNLPRRV
Ga0318516_102582651	3300031543	Soil	RYLMQFWIDLYAADYGGLGVVLAIYFWLAFSSGAIVWAAALSPALAARREFRRNA
Ga0318573_108186992	3300031564	Soil	MWISRFVMEKWLNFYARDYGGLGVVMAIFFWIAFSSAVIVMAASLAPALARRRDIRADGQRS
Ga0318515_107121311	3300031572	Soil	LYAKDYGGLGVVLALYFWIALSSGIIVWAASLSPALAVRRDLRRAR
Ga0318555_100329404	3300031640	Soil	LWLDLYARDYGGFGVVMAIYFWLAFSSAVIVWAAAISPALAQRRELRR
Ga0318561_105972512	3300031679	Soil	VMQLWLDLYARDYGGFGVVMAIYFWLAFSSAVIVWAAAISPALAQRRELRR
Ga0310813_116269452	3300031716	Soil	YARDYGGLGVVLAIYFWIAFSSAVIVGAASLSPALAARRSFRAERASSVST
Ga0307468_1005598381	3300031740	Hardwood Forest Soil	MLVSSVVMELWVNLYARDYGGFGVVMAIFFWIAISSAIVVWAAAVSPPLAARRAARG
Ga0318566_106184491	3300031779	Soil	WINLYAKDYGGFGVVLAIYFWLAFSSAVIVWAASLSPPLSERRALKQGPDARSAGARPL
Ga0318547_110781302	3300031781	Soil	MLVSRYVMQFWVDLYARDYGGLGVVLAIYFWIAFSSAIIVWAASLAPALAERRNLRRAS
Ga0318503_101768672	3300031794	Soil	YARDYGGFGVVMAIYFWLAFSSAVIVWAAAISPALAQRRELRR
Ga0318544_103585291	3300031880	Soil	IASSYVMQLWLDLYARDYGGFGVVMAIYFWLAFSSAVIVWAAAISPALAQRRELRR
Ga0318520_100695101	3300031897	Soil	VLMIASSYVMQLWLDLYARDYGGFGVVMAIYFWLAFSSAVIVWAAAISPALAQRRELRR
Ga0306921_111407371	3300031912	Soil	FWVDLYAQDYGGLGVMLAIYFWLAFSSAVIVWAASLSPALAERRAFRRRS
Ga0310916_109365431	3300031942	Soil	IDLYAADYGGLGVVLAIYFWLAFSSGAIVWAAALSPALAARREFRRNA
Ga0318562_103680272	3300032008	Soil	FWVDLYARDFGGLGVVLAIYFWIAFSSGVIVWAASISPALAQRRSLTQATSTLP
Ga0308173_111676601	3300032074	Soil	DLYARDYGGLGVVLAIYFWLALNSALIVWTASLSPALAVRRNRAAAPSTE
Ga0306924_108530092	3300032076	Soil	LMQFWIDLYAADYGGLGVVLAIYFWLAFSSGAIVWAAALSPALAARREFRRNA
Ga0307470_106963522	3300032174	Hardwood Forest Soil	TFVSGLVMEPWVNLYARDYGGLGVVLAIYFWIAFYSFIIVAAASLAPALAQRRHAVPD
Ga0306920_1008865743	3300032261	Soil	MQFWVDLYARDYGGLGVVLAIYFWIAFSSAIIVWAASLAPALAERRNLRRAS
Ga0335069_103682993	3300032893	Soil	RFVMQFWVDLYARDYGGLGVVLALYFWIAICSGIIVWAAALSPALAERRDVRTARETANV
Ga0335083_107527672	3300032954	Soil	LYARDYGGFGVVMAIYFWLALSSAIIVACASLSPALANRRDLRAMSAP
Ga0335076_100842691	3300032955	Soil	MSFWLDLYARDYGGFGVVLAIYFWLAFSSAVIVWAAAISPALAERRRLRRS
Ga0310810_106378461	3300033412	Soil	YWVDLYARDYGGLGVVLAIYFWIAFSSAVIVGAASLSPALAARRSFRAERASSIST

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056788

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences