Metagenome / Metatranscriptome Family F056708

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056708
Family Type	Metagenome / Metatranscriptome
Number of Sequences	137
Average Sequence Length	52 residues
Representative Sequence	MKQLLCWLLGHDRMTTSARRRVCLRCGTRETLRQFDHVIAWEEVTKAAIHR
Number of Associated Samples	97
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.32 %
% of genes near scaffold ends (potentially truncated)	28.47 %
% of genes from short scaffolds (< 2000 bps)	83.21 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.153 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (18.978 % of family members)
Environment Ontology (ENVO)	Unclassified (31.387 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (35.036 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.13% β-sheet: 25.32% Coil/Unstructured: 64.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF00990	GGDEF	45.99
PF00118	Cpn60_TCP1	4.38
PF01192	RNA_pol_Rpb6	2.92
PF01977	UbiD	2.92
PF04519	Bactofilin	2.19
PF13188	PAS_8	1.46
PF13282	DUF4070	1.46
PF02675	AdoMet_dc	1.46
PF00486	Trans_reg_C	1.46
PF13472	Lipase_GDSL_2	1.46
PF00989	PAS	1.46
PF13407	Peripla_BP_4	0.73
PF00085	Thioredoxin	0.73
PF00069	Pkinase	0.73
PF01872	RibD_C	0.73
PF00374	NiFeSe_Hases	0.73
PF01594	AI-2E_transport	0.73
PF00005	ABC_tran	0.73
PF07715	Plug	0.73
PF08309	LVIVD	0.73
PF16822	ALGX	0.73
PF01927	Mut7-C	0.73
PF02163	Peptidase_M50	0.73
PF08532	Glyco_hydro_42M	0.73
PF00496	SBP_bac_5	0.73
PF00072	Response_reg	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	4.38
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	2.92
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.92
COG1758	DNA-directed RNA polymerase, subunit K/omega	Transcription [K]	2.92
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	2.19
COG1586	S-adenosylmethionine decarboxylase	Amino acid transport and metabolism [E]	1.46
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.73
COG0374	Ni,Fe-hydrogenase I large subunit	Energy production and conversion [C]	0.73
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.73
COG1656	Uncharacterized conserved protein, contains PIN-related Mut7-C RNAse domain	General function prediction only [R]	0.73
COG1874	Beta-galactosidase GanA	Carbohydrate transport and metabolism [G]	0.73
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.73
COG3259	Coenzyme F420-reducing hydrogenase, alpha subunit	Energy production and conversion [C]	0.73
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.15 %
Unclassified	root	N/A	32.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.15 %
Unclassified	root	N/A	32.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.15 %
Unclassified	root	N/A	32.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	8.03 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.03 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.73 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.85 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	6.57 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.19 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.46 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.73 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.73 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.57 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.46 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.73 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.73 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.73 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.73 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.57 %
unclassified Chromatiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales	0.73 %
Anaerolineales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales	0.73 %
Desulfovibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales	0.73 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.73 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.73 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.57 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.73 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.73 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.73 %
Anaerolineaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	0.73 %
Desulfovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae	0.73 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.57 %
Desulfovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio	0.73 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.73 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.73 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.73 %
Anaerolineaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	0.73 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.57 %
unclassified Desulfovibrio	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → unclassified Desulfovibrio	0.73 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.73 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.73 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.73 %
Anaerolineaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	0.73 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.57 %
Desulfovibrio sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → unclassified Desulfovibrio → Desulfovibrio sp.	0.73 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.73 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.73 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.73 %
Anaerolineaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	0.73 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_100193159	Not Available	886	Open in IMG/M
3300001213\|JGIcombinedJ13530_103800918	Not Available	1070	Open in IMG/M
3300001213\|JGIcombinedJ13530_103866214	Not Available	609	Open in IMG/M
3300001213\|JGIcombinedJ13530_106882523	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300001213\|JGIcombinedJ13530_109066166	Not Available	514	Open in IMG/M
3300001431\|F14TB_100232052	Not Available	1110	Open in IMG/M
3300002120\|C687J26616_10080458	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300002121\|C687J26615_10186124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	527	Open in IMG/M
3300003994\|Ga0055435_10106659	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	745	Open in IMG/M
3300004022\|Ga0055432_10246299	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300004073\|Ga0055516_10116415	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300004114\|Ga0062593_100164146	All Organisms → cellular organisms → Bacteria	1709	Open in IMG/M
3300005441\|Ga0070700_100510959	Not Available	926	Open in IMG/M
3300005445\|Ga0070708_100490362	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300005829\|Ga0074479_10848302	Not Available	794	Open in IMG/M
3300005833\|Ga0074472_10061166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	889	Open in IMG/M
3300006224\|Ga0079037_100875454	Not Available	885	Open in IMG/M
3300006224\|Ga0079037_102111293	Not Available	563	Open in IMG/M
3300006844\|Ga0075428_100285734	All Organisms → cellular organisms → Bacteria → Proteobacteria	1775	Open in IMG/M
3300006844\|Ga0075428_102443904	Not Available	536	Open in IMG/M
3300006845\|Ga0075421_100112626	All Organisms → cellular organisms → Bacteria	3419	Open in IMG/M
3300006847\|Ga0075431_101267838	Not Available	698	Open in IMG/M
3300009053\|Ga0105095_10318442	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300009075\|Ga0105090_10247336	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1098	Open in IMG/M
3300009075\|Ga0105090_10436168	Not Available	797	Open in IMG/M
3300009085\|Ga0105103_10220021	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300009091\|Ga0102851_10867989	Not Available	971	Open in IMG/M
3300009091\|Ga0102851_12213336	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300009100\|Ga0075418_11017562	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300009111\|Ga0115026_10935655	Not Available	688	Open in IMG/M
3300009111\|Ga0115026_11706989	Not Available	531	Open in IMG/M
3300009131\|Ga0115027_10208895	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300009146\|Ga0105091_10028619	All Organisms → cellular organisms → Bacteria	2419	Open in IMG/M
3300009146\|Ga0105091_10040401	All Organisms → cellular organisms → Bacteria → Proteobacteria	2055	Open in IMG/M
3300009146\|Ga0105091_10043758	All Organisms → cellular organisms → Bacteria	1978	Open in IMG/M
3300009146\|Ga0105091_10691526	Not Available	534	Open in IMG/M
3300009147\|Ga0114129_10091563	All Organisms → cellular organisms → Bacteria	4212	Open in IMG/M
3300009156\|Ga0111538_11834128	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300009165\|Ga0105102_10941217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	501	Open in IMG/M
3300009167\|Ga0113563_11804809	Not Available	727	Open in IMG/M
3300009170\|Ga0105096_10200657	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300009448\|Ga0114940_10421115	Not Available	589	Open in IMG/M
3300012901\|Ga0157288_10220785	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300012931\|Ga0153915_10195338	All Organisms → cellular organisms → Bacteria	2217	Open in IMG/M
3300012931\|Ga0153915_13381390	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300013080\|Ga0153913_1350860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	753	Open in IMG/M
3300013315\|Ga0173609_11079688	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300014304\|Ga0075340_1136227	Not Available	529	Open in IMG/M
3300014315\|Ga0075350_1141693	Not Available	600	Open in IMG/M
3300014318\|Ga0075351_1141772	Not Available	562	Open in IMG/M
3300014320\|Ga0075342_1096859	Not Available	765	Open in IMG/M
3300014324\|Ga0075352_1159669	Not Available	640	Open in IMG/M
3300014884\|Ga0180104_1041022	All Organisms → cellular organisms → Bacteria → Proteobacteria	1219	Open in IMG/M
3300014885\|Ga0180063_1065963	Not Available	1063	Open in IMG/M
3300018063\|Ga0184637_10046979	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2629	Open in IMG/M
3300018072\|Ga0184635_10034524	All Organisms → cellular organisms → Bacteria	1914	Open in IMG/M
3300018077\|Ga0184633_10092041	All Organisms → cellular organisms → Bacteria	1564	Open in IMG/M
3300018077\|Ga0184633_10105286	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
3300018079\|Ga0184627_10160563	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1191	Open in IMG/M
3300018082\|Ga0184639_10054679	All Organisms → cellular organisms → Bacteria	2068	Open in IMG/M
3300020063\|Ga0180118_1168664	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300020067\|Ga0180109_1431251	Not Available	588	Open in IMG/M
3300021090\|Ga0210377_10019411	All Organisms → cellular organisms → Bacteria	5011	Open in IMG/M
3300021090\|Ga0210377_10025903	All Organisms → cellular organisms → Bacteria	4239	Open in IMG/M
3300021090\|Ga0210377_10121967	All Organisms → cellular organisms → Bacteria	1723	Open in IMG/M
3300023066\|Ga0247793_1034739	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300024056\|Ga0124853_1309309	Not Available	2862	Open in IMG/M
3300025159\|Ga0209619_10258013	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300025160\|Ga0209109_10018003	All Organisms → cellular organisms → Bacteria	3806	Open in IMG/M
3300025319\|Ga0209520_10189779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1295	Open in IMG/M
3300025324\|Ga0209640_10011690	All Organisms → cellular organisms → Bacteria	7636	Open in IMG/M
3300025538\|Ga0210132_1021103	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300025823\|Ga0210123_1199886	Not Available	577	Open in IMG/M
3300025899\|Ga0207642_10582763	Not Available	694	Open in IMG/M
3300027675\|Ga0209077_1027495	All Organisms → cellular organisms → Bacteria	1537	Open in IMG/M
3300027675\|Ga0209077_1104924	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300027841\|Ga0209262_10239434	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300027871\|Ga0209397_10225244	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300027885\|Ga0209450_10096421	All Organisms → cellular organisms → Bacteria	1951	Open in IMG/M
3300027897\|Ga0209254_10057435	All Organisms → cellular organisms → Bacteria	3372	Open in IMG/M
3300027902\|Ga0209048_10047739	All Organisms → cellular organisms → Bacteria	3517	Open in IMG/M
3300027902\|Ga0209048_10218727	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300027902\|Ga0209048_10390240	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300027902\|Ga0209048_10704793	Not Available	665	Open in IMG/M
3300027909\|Ga0209382_10621654	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300027975\|Ga0209391_10116573	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300028420\|Ga0210366_10237383	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300030613\|Ga0299915_10167845	All Organisms → cellular organisms → Bacteria	1566	Open in IMG/M
3300031691\|Ga0316579_10496934	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → unclassified Desulfovibrio → Desulfovibrio sp.	590	Open in IMG/M
3300031740\|Ga0307468_101386889	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300031858\|Ga0310892_10659161	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300031918\|Ga0311367_12069034	Not Available	548	Open in IMG/M
3300031940\|Ga0310901_10272374	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300031949\|Ga0214473_10015889	All Organisms → cellular organisms → Bacteria → Proteobacteria	8805	Open in IMG/M
3300031949\|Ga0214473_10130476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2930	Open in IMG/M
3300031949\|Ga0214473_10335426	All Organisms → cellular organisms → Bacteria	1719	Open in IMG/M
3300031949\|Ga0214473_10520293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	1325	Open in IMG/M
3300031949\|Ga0214473_10779600	Not Available	1033	Open in IMG/M
3300031949\|Ga0214473_11469212	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300031949\|Ga0214473_11778279	Not Available	610	Open in IMG/M
3300031949\|Ga0214473_11978549	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031965\|Ga0326597_10341600	All Organisms → cellular organisms → Bacteria	1686	Open in IMG/M
3300032013\|Ga0310906_10030700	All Organisms → cellular organisms → Bacteria	2445	Open in IMG/M
3300032251\|Ga0316198_10198794	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300032770\|Ga0335085_10014140	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	11666	Open in IMG/M
3300032770\|Ga0335085_10174664	All Organisms → cellular organisms → Bacteria	2662	Open in IMG/M
3300032770\|Ga0335085_10423009	All Organisms → cellular organisms → Bacteria	1540	Open in IMG/M
3300032782\|Ga0335082_10154400	Not Available	2219	Open in IMG/M
3300032829\|Ga0335070_10105506	All Organisms → cellular organisms → Bacteria → Acidobacteria	2941	Open in IMG/M
3300033004\|Ga0335084_10810967	Not Available	950	Open in IMG/M
3300033408\|Ga0316605_10579018	All Organisms → cellular organisms → Bacteria	1046	Open in IMG/M
3300033416\|Ga0316622_100131836	All Organisms → cellular organisms → Bacteria	2572	Open in IMG/M
3300033416\|Ga0316622_101228223	Not Available	876	Open in IMG/M
3300033416\|Ga0316622_101449852	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300033416\|Ga0316622_101916383	Not Available	689	Open in IMG/M
3300033416\|Ga0316622_102044491	Not Available	665	Open in IMG/M
3300033416\|Ga0316622_103179817	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300033417\|Ga0214471_11271272	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300033418\|Ga0316625_100806610	Not Available	807	Open in IMG/M
3300033419\|Ga0316601_101830815	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300033433\|Ga0326726_10073173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3028	Open in IMG/M
3300033433\|Ga0326726_11273812	All Organisms → cellular organisms → Bacteria → Proteobacteria	715	Open in IMG/M
3300033433\|Ga0326726_11554515	Not Available	644	Open in IMG/M
3300033433\|Ga0326726_11588984	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300033434\|Ga0316613_10991271	Not Available	578	Open in IMG/M
3300033482\|Ga0316627_102140530	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300033483\|Ga0316629_11108043	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	628	Open in IMG/M
3300033485\|Ga0316626_11838870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	548	Open in IMG/M
3300033486\|Ga0316624_10153456	All Organisms → cellular organisms → Bacteria	1721	Open in IMG/M
3300033486\|Ga0316624_10260547	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300033493\|Ga0316631_10290250	Not Available	653	Open in IMG/M
3300033513\|Ga0316628_100483675	Not Available	1594	Open in IMG/M
3300033521\|Ga0316616_102894172	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300033521\|Ga0316616_103806633	Not Available	568	Open in IMG/M
3300033521\|Ga0316616_104033487	Not Available	553	Open in IMG/M
3300033550\|Ga0247829_11626025	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300034177\|Ga0364932_0189277	Not Available	782	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.97%
Host-Associated	Host-Associated	7.30%
Engineered	Engineered	0.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	47.45%
Aquatic	Environmental → Aquatic	44.53%
Plants	Host-Associated → Plants	7.30%
Wastewater	Engineered → Wastewater	0.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.07%
Freshwater	Environmental → Aquatic → Freshwater	28.47%
Marine	Environmental → Aquatic → Marine	8.76%
Sediment	Environmental → Aquatic → Sediment	7.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.57%
Peat	Environmental → Terrestrial → Peat	3.65%
Floodplain	Environmental → Terrestrial → Floodplain	0.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.73%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	0.73%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	22.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	16.06%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	16.06%
Wetlands	Environmental → Aquatic → Marine → Wetlands	7.30%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.30%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.57%
Lentic	Environmental → Aquatic → Freshwater → Lentic	4.38%
Loam	Environmental → Terrestrial → Soil → Loam	4.38%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.65%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.73%
Pond	Environmental → Aquatic → Freshwater → Pond	0.73%
Coastal	Environmental → Aquatic → Marine → Coastal	0.73%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.73%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.73%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.73%
Mine Water	Engineered → Wastewater → Industrial Wastewater → Mine Water	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	22.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	16.06%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.30%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.57%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	6.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.57%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	4.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.38%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.65%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	3.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.92%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	2.19%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.46%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.73%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.73%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.73%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.73%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.73%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.73%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	18.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	9.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	6.57%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.84%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	5.11%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	4.38%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.38%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.65%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.65%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	3.65%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	3.65%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	2.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.92%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.19%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	2.19%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.46%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.46%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.46%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.73%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.73%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Sediment	0.73%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.73%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.73%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.73%
Sediment	Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified → Sediment	0.73%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002120	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2	Environmental	Open in IMG/M
3300002121	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300004022	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1	Environmental	Open in IMG/M
3300004073	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_CordB_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009448	Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Cold Creek Source	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300013080	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013315	Sediment microbial communities from Acid Mine Drainage holding pond in Pittsburgh, PA, USA - 1B	Engineered	Open in IMG/M
3300014304	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D1	Environmental	Open in IMG/M
3300014315	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D1	Environmental	Open in IMG/M
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300014324	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300023066	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S223-509R-6	Environmental	Open in IMG/M
3300024056	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300025159	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025319	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025538	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025823	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027675	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027841	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027975	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300028420	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.641 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030613	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227	Environmental	Open in IMG/M
3300031691	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032251	Coastal sediment microbial communities from Oude Bieten Haven, Netherlands - site A anoxic	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033493	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D3_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034177	Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1001931591	3300001213	Wetland	MRKLLCWLLGHDHMNTSARHRVCVRCDARETLRNYGDVLAWEAVAPSRARG*
JGIcombinedJ13530_1038009183	3300001213	Wetland	MRKMLCWIFGHEFMNTSARHRICVRCEARETLRNLGDVVAWEEVPKVRA*
JGIcombinedJ13530_1038662142	3300001213	Wetland	MRKLLCWLFNHDRMTTSSRHRICLRCGQRETLRHFDHVLAWEEVGRAAVRGAGA*
JGIcombinedJ13530_1068825232	3300001213	Wetland	MRKLLCWVLGHDCMTTSARRRVCLRCGQRETLRDYGNVRGWEEVSEAVAPRA
JGIcombinedJ13530_1090661662	3300001213	Wetland	MRKLLCWLLDHDRMTTSARHRICLRCGQRETLREYGHVVAWEEVAGSAGSSR*
F14TB_1002320522	3300001431	Soil	MKQLLCWLLGHDCMTTSARRRVCLRCGTRETLRQFDHVIAWEEVPKAAIHR*
C687J26616_100804582	3300002120	Soil	MRQFLCWLFGHDRMTTSARQRVCVRCGTRETLRDFGRTLAWEERTKAPVPGSRA*
C687J26615_101861241	3300002121	Soil	MQAFLCWLLGHDRMTTSARQRIGLRCGTRETLRHYGVILGWEEVAKAAV
Ga0055435_101066592	3300003994	Natural And Restored Wetlands	MRKLLCWFLGHDRMTTSARRRVCLRCGQRETLHNYGHVLAWEEAPFVASRKM*
Ga0055432_102462991	3300004022	Natural And Restored Wetlands	MQKILCWLLGHDCMTTSARRRVCLRCGQREELRDFGNVLGWQEVGESAVRGSRR*
Ga0055516_101164151	3300004073	Natural And Restored Wetlands	MSEMRKFLCWFLGHDRMQTGTAHRVCLRCGQREKRRHLGHVTAWEEVAGTAIRD*
Ga0062593_1001641462	3300004114	Soil	MKQLLCWLLGHDRMTTSLRRRVCLRCGTRETLRQFDHVSAWEEVAKVAVQR*
Ga0070700_1005109592	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MKQLLCWLLGHDRMTTSLRRRVCLRCGTRETLRQFDHVSAWE
Ga0070708_1004903622	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKQLLCWLLGHDRMTTSLRRRVCLRCGTRETLRQFDHVSAWEEVAKVAIQR*
Ga0074479_108483022	3300005829	Sediment (Intertidal)	MKQFLCWLLGHDRMTTSPRQRVCVRCGTRETLRDFGRTLAWEERAKAEKA*
Ga0074472_100611662	3300005833	Sediment (Intertidal)	MREFLCWLLGHDRMTTSARQRICLRCGTRETLRHFGNVSGWEEVTGSATRRSKV*
Ga0079037_1008754541	3300006224	Freshwater Wetlands	MRRFLCWLLGHDRMTKSARNRICLRCGQRETLRDFGHVLAWEEAPEAADRSSRSATRRRGA*
Ga0079037_1021112931	3300006224	Freshwater Wetlands	MRRFLCWLLGHDRMTTSARRRICLRCGQRETLRDF
Ga0075428_1002857341	3300006844	Populus Rhizosphere	MKQFLCWLMGHDRMTTSARQRVCLRCGTRETLRDMGHVHAWQELTKRV
Ga0075428_1024439042	3300006844	Populus Rhizosphere	HDRMTTSARQRVCLRCGTRETLRDMGHVHAWQELTKRVVRVKA*
Ga0075421_1001126263	3300006845	Populus Rhizosphere	MKQLLCWLLGHDCMTTSARRRVCLRCGTRETLRQFDHVIAWEEVAKPAIHR*
Ga0075431_1012678382	3300006847	Populus Rhizosphere	MKQFLCWLMGHDRMTTSARQRVCLRCGTRETLRDMGHVHAWQELTKRVVGVKA*
Ga0105095_103184421	3300009053	Freshwater Sediment	MSCDEGVEMKKLLCWLLGHDRMTTSASHRVCLRCGVRETRRNFGSVIAWEEQGAVAIRGSRA*
Ga0105090_102473362	3300009075	Freshwater Sediment	MRAFLCWLLGHDRMTTSARQRICLRCGTRETRQYYGTTVGWEEVRKTATRSSRVW*
Ga0105090_104361681	3300009075	Freshwater Sediment	MRAFLCWLFGHDRMTTSARQRICLRCGTRETRQYYGTTVGWEDVRKTATRSSRAW
Ga0105103_102200212	3300009085	Freshwater Sediment	MRALLCWLLGHDRMTTSSRQRVCLRCGTRETRQYYGTTVGWEEERKASTRSSRVW*
Ga0102851_108679892	3300009091	Freshwater Wetlands	MRKILCWFLGHDCMTTSARRRVCLRCGQRETLRDYGNVLGWE
Ga0102851_122133362	3300009091	Freshwater Wetlands	MRRILCWLLGHDCMVTSARRRVCLRCGQRETLRDYGNVRGWEEAGKTAAPPTRG*
Ga0075418_110175622	3300009100	Populus Rhizosphere	KQLLCWLLGHDCMTTSARRRVCLRCGTRETLRQFDHVIAWEEVAKPAIHR*
Ga0115026_109356552	3300009111	Wetland	MHRFLCRLFGHDLMTTSARHRICLRCGQRETLRDLGHVLAWEEVTGAAARGPKA*
Ga0115026_117069892	3300009111	Wetland	MRKLLCRLLGHDCMTTSARRRVCLRCGQRETLRNYGNVLGWEEVNEAAGPG
Ga0115027_102088952	3300009131	Wetland	MRAFLCWLLGHDRMTTSAHQRICLRCGTREKRQYYGTTVGWEEVAKVAPRR*
Ga0105091_100286192	3300009146	Freshwater Sediment	MRKILCWFLGHDCMTTSARRRVCVRCGQRETLRDYGNVRGWEEVSEAAASGSRRG*
Ga0105091_100404015	3300009146	Freshwater Sediment	MRRLLCRLFDHDRMTTSTRHRVCLRCGQREMLRYFDHVVAWEEMPPAAVGRARY*
Ga0105091_100437582	3300009146	Freshwater Sediment	MKKLPCWLFGHDLMTTSARQRECIRCDQKETLRQFGAVMAWEEVRRPVRP*
Ga0105091_106915261	3300009146	Freshwater Sediment	MSCDEGVEMKKLLCWLLGHDRMTTSASHRVCLRCGVRETRRNFGSVIVWEEQSAVAI
Ga0114129_100915632	3300009147	Populus Rhizosphere	MKQFLCWLMGHDRMTTSARQRVCLRCGTRETLRDMGHVHAWQELTKHVVRVKA*
Ga0111538_118341281	3300009156	Populus Rhizosphere	MKQLLCWLLGHDCMTTSARRRVCLRCGTRETLRQFEHVTAWEEVAKAAIHR*
Ga0105102_109412172	3300009165	Freshwater Sediment	MRAFLCWLLGHDRMTTSARQRICRRCGTRVLRNYSATT
Ga0113563_118048091	3300009167	Freshwater Wetlands	MRAFLCWLLGHDRMTTSARQRICLRCGTRETRRYYGTTDAWEEVPKAAPRRSRVR*
Ga0105096_102006572	3300009170	Freshwater Sediment	MRSFLCWLLGHDRMTTSSRQRICLRCGTRETRRYYGSTVGWEEVSKTATRSSRGW*
Ga0114940_104211152	3300009448	Groundwater	WLFGHDRMTTSARQRVCVRCDTRETLRDLGHVRAWVELTKGAVPASKA*
Ga0157288_102207851	3300012901	Soil	VPGGDRMKQLLCWLLGHDRMTTSLRRRVCLRCGTRETLRQFDHVSAWEEVAKVAVQR*
Ga0153915_101953384	3300012931	Freshwater Wetlands	MRKILCRFLGHDRMTTSVRQRVCLRCGQRETLRDYGNVRGWEEVSETAVRGSRTGPILRTR*
Ga0153915_133813902	3300012931	Freshwater Wetlands	MRKILCWFLGHDCMTTSTRRRVCLRCGQRETLRDYGNVLGWEEVSESAVRGSRS
Ga0153913_13508601	3300013080	Freshwater Wetlands	MRKILCRFLGHDRMTTSVRQRVCLRCGQRETLRDYGNVRGWEEVSETVVRGSRTGQIFRTR*
Ga0173609_110796882	3300013315	Sediment	MRGFLCWLLGHDRMTTSARDRICLRCGTRETRQYYGDTVGWEEVSKTATRGSKVR*
Ga0075340_11362272	3300014304	Natural And Restored Wetlands	MKQFLCWLLGHDRMTTSARQRVCVRCGTRETLRDFGSTLAWEERAKA
Ga0075350_11416932	3300014315	Natural And Restored Wetlands	MKQFLCWLLGHDRMTTSARQRVCVRCGTRETLRDFGSTLAWEERAKAAVPGSKA*
Ga0075351_11417721	3300014318	Natural And Restored Wetlands	MKQFLCWLLGHDRMTTSPRQRVCVRCGTRETLRDFGRTLAWEERAKAVAPAEKA*
Ga0075342_10968591	3300014320	Natural And Restored Wetlands	MTKVLCWLLGHDRMTTNARTRVCVRCGATETLRNYGSVMGWEEAEKRSR*
Ga0075352_11596691	3300014324	Natural And Restored Wetlands	MKRLLCWLLGHDRMTTRARQRVCLRCGTRETLRHYGSVTGWEEVT*
Ga0180104_10410222	3300014884	Soil	MQAFLCWLLGHDRMTTSARQRICLRCGTRETLRHYGVILGWEEVAKAAVRGARP*
Ga0180063_10659632	3300014885	Soil	MKKFLCWLLGHDRMTTSARHRICLRCGTRETQRHFGIGVAWEEVTRAAIRGSRA*
Ga0184637_100469793	3300018063	Groundwater Sediment	MKQFLCWLFGHDRMTTSPRQRVCVRCDTRETLRDLGHVRAWVELTKGAVPASKA
Ga0184635_100345242	3300018072	Groundwater Sediment	MKQLLCWLLGHDRMTTSARRRVCLRCGTRETLRQFDHVIAWEEVTKAAIHR
Ga0184633_100920412	3300018077	Groundwater Sediment	MKRFLCWLFDHDRMTTSARHRICLRCGTRETLRYFGSVLAWEEVTSAAIRGSRV
Ga0184633_101052863	3300018077	Groundwater Sediment	MKQFLCWLLGHDRMTTSARQRECVRCGTRETLRDFGSTLAWE
Ga0184627_101605632	3300018079	Groundwater Sediment	MKQLLCWLFGHDRMTTSPRQRVCTRCDTHETLRDLGHVRAWEVMTKGAVPASKA
Ga0184639_100546792	3300018082	Groundwater Sediment	MKRFLCWLFDHDRMTTSARHRICLRCGTRETLRYFGSVLAWDEVTSAAIRGSRV
Ga0180118_11686641	3300020063	Groundwater Sediment	MKKFLCWLLGHDRMTTSARHRICLRCGTRETQRHFGIGVAWEEVTRAAIRGSRA
Ga0180109_14312512	3300020067	Groundwater Sediment	MKQFLCWLFGHDRMTTSARQRVCVRCGTRETLREFGSTLAWEERARAAVRAKA
Ga0210377_100194115	3300021090	Groundwater Sediment	MQAFLCWLLGHDRMTTSARQRICLRCGTRETLRHYGVILGWEEVAKAAVRGARP
Ga0210377_100259033	3300021090	Groundwater Sediment	MRQFLCWLFGHDRMTTSVRKRVCVRCGTQETLRDFGSTLAWEERAKAPVRGSRA
Ga0210377_101219672	3300021090	Groundwater Sediment	MRKFLCWLFDHDRMTTSARHRICLRCGTRETLRHYGSVLGWEEVAGAEVSGSRA
Ga0247793_10347392	3300023066	Soil	MKQLLCWLLGHDRMTTSLRRRVCLRCGTRETLRQFDHVSAWEEVAKVAVQR
Ga0124853_13093093	3300024056	Freshwater Wetlands	MRKLLCWLLVHDCMTTSARRRVCLRCGQRETLRDYGNVLGWER
Ga0209619_102580132	3300025159	Soil	MKQLLCWLFGHDRMTTSARQRVCVRCGTREALRQFGQVVAWEELAKVAVRAKA
Ga0209109_100180033	3300025160	Soil	MRQFLCWLFGHDRMTTSARQRVCVRCGTRETLRDFGRTLAWEERTKAPVPGSRA
Ga0209520_101897791	3300025319	Soil	LLGHDRMTTSVRHRVCLRCGTRETLRYFGSVIAWEEQTKAPLRGSRA
Ga0209640_100116902	3300025324	Soil	MQAFLCWLLGHDRMTTSARQRIGLRCGTRETLRHYGVILGWEEVAKAAVRGARP
Ga0210132_10211032	3300025538	Natural And Restored Wetlands	MRKLLCWFLGHDRMTTSARRRVCLRCGQRETLHNYGHVLAWEEAPFVASRKM
Ga0210123_11998862	3300025823	Natural And Restored Wetlands	MREWFCWVFGHDRMQTRAAHRTCLRCGQREKLRQLGHVVAWEEVGVTVTRD
Ga0207642_105827631	3300025899	Miscanthus Rhizosphere	MKQLLCWLLGHDRMTTSLRRRVCLRCGTRETLRQFDHVSAWEEVAKVAVQ
Ga0209077_10274952	3300027675	Freshwater Sediment	MRKILCWFLGHDCMTTSARRRVCVRCGQRETLRDYGNVRGWEEVSEAAASGSRRG
Ga0209077_11049242	3300027675	Freshwater Sediment	MRRLLCRLFDHDRMTTSTRHRVCLRCGQREMLRYFDHVVAWEEMPPAAVGR
Ga0209262_102394342	3300027841	Freshwater	MKAFLCWLLGHDRMTTSTRQRICLRCGTRETLRHFGNVIGWEEVTGSATRGSKT
Ga0209397_102252442	3300027871	Wetland	MRAFLCWLLGHDRMTTSAHQRICLRCGTREKRQYYGTTVGWEEVAKVAPRR
Ga0209450_100964213	3300027885	Freshwater Lake Sediment	MREFLCWLLGHDRMTTSSRQRICLRCGTRETLRHFGNVMGWEEVTGSATRRSKV
Ga0209254_100574355	3300027897	Freshwater Lake Sediment	MREFLCWLLGHDRMTTSSRQRICLRCGTRETLRHFGNVIGWEEVTGSATRGSRA
Ga0209048_100477393	3300027902	Freshwater Lake Sediment	MRKFLCWLLDHDRMTTSARHRICLRCGMRETLRHFGSVLAWEELPAAAVRGSRA
Ga0209048_102187271	3300027902	Freshwater Lake Sediment	MRKLLCWLFDHDRMTTSSRHRICLRCGQRETLRYFDHVLAWEEVTGAAVRGARA
Ga0209048_103902402	3300027902	Freshwater Lake Sediment	MRKLLCWLLDHDRMTTSARHRICLRCGQRETLREYGHVLAWEEVAGSAGSSR
Ga0209048_107047933	3300027902	Freshwater Lake Sediment	MRKILCWLLDHDRMTTSARHRVCVRCGQQETLRHFGHVVAWEEVTGSAVRSSSA
Ga0209382_106216542	3300027909	Populus Rhizosphere	PGGDRMKQLLCWLLGHDCMTTSARRRVCLRCGTRETLRQFDHVIAWEEVAKPAIHR
Ga0209391_101165732	3300027975	Freshwater Sediment	MRAFLCWLFGHDRMTTSARQRICLRCGTRETRQYYGTTVGWEEVRKTATRSSRVW
Ga0210366_102373832	3300028420	Estuarine	MQKLLCWFLGHDRMQTRAAHRICLRCGQRETLRHLGNVLAWEEVSGTAIRD
Ga0299915_101678452	3300030613	Soil	MRKILCWLLGHDCMTTSARRRVCLRCGQRETLRDYGNVRGWEEIGETALRGSGR
Ga0316579_104969342	3300031691	Rhizosphere	MRKILCWFLGHDCMTTSARRRVCLRCGLRETLRDYGNVLGWEEVGETYSSPRRG
Ga0307468_1013868892	3300031740	Hardwood Forest Soil	MKQLLCWLLGHDRMTTSYRRRVCLRCGTRETLRQFDHVSAWEEVAKVAIQR
Ga0310892_106591612	3300031858	Soil	MKQLLCWLLGHDRMTTSSRRRVCLRCGTRETLRQFDHVIAWEEVTKAAIHR
Ga0311367_120690341	3300031918	Fen	MRKLLCWLLGHDHMNTSARHRVCVRCDARETLRNHGEVLAWEAVAKHGARG
Ga0310901_102723742	3300031940	Soil	MKQLLCWLLGHDRMTTSLRRRVCLRCGTRETLRQFDHVIAWEEVAKAVIHR
Ga0214473_100158894	3300031949	Soil	MKQFLCWLMGHDRMTTSARQRVCVRCGTRETLRQFGQVVAWEELAKAAVRAKA
Ga0214473_101304761	3300031949	Soil	MKQFLCWLFGHDRMTASARQRVCVRCGTRETLRDFGRTLAGEERTNTKA
Ga0214473_103354262	3300031949	Soil	MSKLLCWLFDHDRMTTSARHRICLRCGLRETLRQFGRVLAWEELTKVAVRGSKA
Ga0214473_105202931	3300031949	Soil	LLGHDRMTTSARHRICLRCGTRETQRHFGIGVAWEEVTRAAIRGSRA
Ga0214473_107796002	3300031949	Soil	MKKFLCWLLGHDRMTTSARHRICLRCGTRETQRHFGIGVAWEEVTRAAIRGSR
Ga0214473_114692122	3300031949	Soil	MRQFLCWLFGHDRMTTSARQRVCVRCGTQETLRDFGSTLAWEERAKAPVRGSRA
Ga0214473_117782791	3300031949	Soil	MKQFLCWLFGHDRMTTSARQRVCVRCGTRETLRQFGRVLAWEEIGKAATKA
Ga0214473_119785491	3300031949	Soil	MRKILCWLLGHDCMTTSARRRVCLRCGQRETLRDYGNVRGWEEIGETAL
Ga0326597_103416002	3300031965	Soil	MKQFLCWLMGHDRMTTNARQRVCVRCGTRETLRQFGQVVAWEELAKAAVRAKA
Ga0310906_100307002	3300032013	Soil	MKQLLCWLLGHDRMTTSARRRVCLRCGTRETLRQFDHVIAWEEVAKAVIHR
Ga0316198_101987942	3300032251	Sediment	MQKWLCRFFGHDRMTTSVSHRVCLRCGQRERLHNLGNVLGWVEVAQSAIRGSRA
Ga0335085_100141406	3300032770	Soil	MRKVLCWLFGHDRMTTSARHRVCVRCGMRETLRHIGSVVAWEEMAAP
Ga0335085_101746644	3300032770	Soil	MRRILCWLLGHDCMTTSARRRVCLRCGLRETLRDYGNVRGWEEAGEAPPHGSRR
Ga0335085_104230091	3300032770	Soil	PRPRPKRREGQTEMRKILCWFLGHDRMATSARQRVCLRCGQREMLRDYGNVRGWEELAKTAARGSRTGPIFRAR
Ga0335082_101544001	3300032782	Soil	LFGHDRMTTSARHRVCVRCGMRETLRHIGSVVAWEEMAAP
Ga0335070_101055064	3300032829	Soil	MRKILCRFLGHDRMATSARQRVCLRCGQRETLRDYGNVRGWEEVGDTAVPGSRTGQIFRT
Ga0335084_108109671	3300033004	Soil	MRKILCWLLGHDCMTTSARRRVCLRCGQRETLRDYGNVRGWEEVGETAVRGSRTGPIFPA
Ga0316605_105790182	3300033408	Soil	MRAFLCWLLGHDRMTTSARQRICLRCGTRETRRYYGTTDAWEEVPKAAPRR
Ga0316622_1001318362	3300033416	Soil	MRRILCWLLGHDCMVTSARRRVCLRCGQRETLRDYGNVRGWEEAGKTAAPPTRG
Ga0316622_1012282232	3300033416	Soil	MRRFLCWLLGHDRMTTSARRRICLRCGQRETLRDFGHVLAWEEAPEAADRSSRSATRRRG
Ga0316622_1014498521	3300033416	Soil	GRRERGEMSKFLCWLLGHDRMTTSAHHRVCLRCGTRETLRNFGNVVAWEEHPEVAARGR
Ga0316622_1019163831	3300033416	Soil	MHRFLCRLFGHDLMTTSARHRICLRCGQRETLRDLGHVLAWEEVTGAAARGPKA
Ga0316622_1020444911	3300033416	Soil	RREEQAEMRKILCWFIGHDCMTTSTRRRVCLRCGQRETLRDYGNVLGWEEVSESAVRGSRSIGE
Ga0316622_1031798172	3300033416	Soil	MRKILCWFIGHDCMTTSARRRVCLRCGQRETLRDYGNVLGWE
Ga0214471_112712722	3300033417	Soil	MKQFLCWLLGHDRMTTSQRQRVCVRCGTRETLRDFGKTLAWEERAKAVVSASRE
Ga0316625_1008066103	3300033418	Soil	MHRFLCRLFGHDRMATSARHRICVRCGQRETLRDFGHVLAWEEVAAAAAHGSKASHPRVE
Ga0316601_1018308151	3300033419	Soil	LCWLLGHDCMVTSARRRVCLRCGQRETLRDYGNVRGWEEAGKTAAPPTRG
Ga0326726_100731732	3300033433	Peat Soil	MSRLLCWLLGHDRMTTSPRQRVCLRCGARETLRRYGQVVGWEEVTEAAAAGPGA
Ga0326726_112738121	3300033433	Peat Soil	MRKILCWVLGHDRMATTARKRVCLRCGQRETLRDYGNVRGWEEVGETAVRGSRTGTIFRA
Ga0326726_115545152	3300033433	Peat Soil	MRKLLCWLLGHDHMNTSARYRVCVRCDARETLRNYGDVLAWEAVAKSGARG
Ga0326726_115889842	3300033433	Peat Soil	WVLGHDRMATTARQRVCLRCGQRETLRDYGNVRGWEEVGDTAVRGSGPIFRAR
Ga0316613_109912711	3300033434	Soil	MRKLLCWLLGHDCMTTSARRRVCLRCGQRETLRDYGNVLGWEEVSKPAVPGARG
Ga0316627_1021405302	3300033482	Soil	MSRFLCWLLGHDRMTTSARHRVCLRCGTRETLRYFGIGIAWEEATKAIRGSRV
Ga0316629_111080432	3300033483	Soil	MSTFLCWLVGHDRMTTSARQRICLRCGTRETLRYFGSVLAWEEQARAAVGRSTARSAPRRATA
Ga0316626_118388702	3300033485	Soil	MRKILCWFIGHDCMTTSARRRVCLRCGQRETLRDYGNVLGWEEVGKGEAVAR
Ga0316624_101534562	3300033486	Soil	MRKILCRFLGHDRMATSARQRVCLRCGQRETLRDYGKVRGWEEVGETAARGSGTGPIFRA
Ga0316624_102605472	3300033486	Soil	MRKILCWFLGHDRMATSARKRVCLRCGQRETLRDYGNVRGWEEVGEAVVRGSRTT
Ga0316631_102902501	3300033493	Soil	VRRTERREEQTEMRKILCWFLGHDCMTTSARRRVCLRCGQRETLRDYGNVLGWEEVSESAVRGSRSIGE
Ga0316628_1004836752	3300033513	Soil	MRKILCWFLGHDRMTTSARQRVCLRCGQRETLRDYGNVRGWEEVSETAVRGSRTRPILRT
Ga0316616_1028941722	3300033521	Soil	MRKILCWFLGHDCMTTSTRRRVCLRCGQRETLRDYGNVFGWEEVG
Ga0316616_1038066331	3300033521	Soil	MRAFLCWLLGHDRMTTSAQERICLRCGAREARHYYGSTVGWEEVPK
Ga0316616_1040334871	3300033521	Soil	MRKMLCWLFDHDRMTTSMRHRVCLRCGQRETLRYFEHVV
Ga0247829_116260251	3300033550	Soil	VPGGDRMKQLLCWLLGHDRMTTSLRRRVCLRCGTRETLRQFDHVSAWEEVAKVAVQR
Ga0364932_0189277_122_286	3300034177	Sediment	MKQFLCWLLGHDRMTTSARQRICLRCGTRETLRDFGNTLAWEERVRVAVGASKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056708

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences