NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F056568

Metagenome / Metatranscriptome Family F056568

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F056568
Family Type Metagenome / Metatranscriptome
Number of Sequences 137
Average Sequence Length 45 residues
Representative Sequence TINAAIAVPGSVTAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA
Number of Associated Samples 114
Number of Associated Scaffolds 137

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 3.65 %
% of genes from short scaffolds (< 2000 bps) 2.19 %
Associated GOLD sequencing projects 110
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (98.540 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(32.847 % of family members)
Environment Ontology (ENVO) Unclassified
(62.774 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(69.343 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 25.68%    β-sheet: 10.81%    Coil/Unstructured: 63.51%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 137 Family Scaffolds
PF10124Mu-like_gpT 41.61



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A98.54 %
All OrganismsrootAll Organisms1.46 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003431|JGI25913J50563_1009483Not Available1736Open in IMG/M
3300008267|Ga0114364_1004913All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6895Open in IMG/M
3300025426|Ga0208739_1014324Not Available1474Open in IMG/M
3300027708|Ga0209188_1068692All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1507Open in IMG/M
3300027798|Ga0209353_10027078Not Available2677Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake32.85%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater8.76%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater7.30%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment7.30%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous6.57%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake4.38%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater4.38%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater3.65%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater2.92%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater2.92%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.92%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic2.19%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment1.46%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton1.46%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake1.46%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.73%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater0.73%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater0.73%
Anoxic Zone FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater0.73%
Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment0.73%
AquaticEnvironmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic0.73%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.73%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.73%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface0.73%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.73%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment0.73%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.73%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.73%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000203Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnionEnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300003393Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DDEnvironmentalOpen in IMG/M
3300003431Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SNEnvironmentalOpen in IMG/M
3300003797Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07EnvironmentalOpen in IMG/M
3300003827Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29Jun09EnvironmentalOpen in IMG/M
3300004763Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004790Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004836Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005419Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005580Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRFEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300006104Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1EnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006928Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaGEnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300008267Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTREnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300009081Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015EnvironmentalOpen in IMG/M
3300009158Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaGEnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300012012Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012739Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES028 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012741Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES014 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012778Freshwater microbial communities from Lake Croche, Canada - C_130208_E_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012785Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES011 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012967Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013130 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2EnvironmentalOpen in IMG/M
3300013295northern Canada Lakes metatranscriptome co-assemblyEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300015050Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017700Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.D.DEnvironmentalOpen in IMG/M
3300017701Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017716Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.DEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017747Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.NEnvironmentalOpen in IMG/M
3300017754Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.DEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300018080Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaGEnvironmentalOpen in IMG/M
3300019783Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020179Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0mEnvironmentalOpen in IMG/M
3300020498Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020529Freshwater microbial communities from Lake Mendota, WI - 07SEP2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020530Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020536Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020556Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021137Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnionEnvironmentalOpen in IMG/M
3300021140Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnionEnvironmentalOpen in IMG/M
3300021519Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5mEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022179Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.NEnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300022543Indian_combined assemblyEnvironmentalOpen in IMG/M
3300023179Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510EnvironmentalOpen in IMG/M
3300024289Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8hEnvironmentalOpen in IMG/M
3300024573Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024866Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025339Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul07 (SPAdes)EnvironmentalOpen in IMG/M
3300025357Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)EnvironmentalOpen in IMG/M
3300025389Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Sep07 (SPAdes)EnvironmentalOpen in IMG/M
3300025426Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul09 (SPAdes)EnvironmentalOpen in IMG/M
3300025450Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09 (SPAdes)EnvironmentalOpen in IMG/M
3300025687Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025818Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025843Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm (SPAdes)EnvironmentalOpen in IMG/M
3300027563Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027581Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027656Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027679Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027708Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027732Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027763Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027777Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027798Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300027808Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)EnvironmentalOpen in IMG/M
3300028085Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029349Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103EnvironmentalOpen in IMG/M
3300029933Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2EnvironmentalOpen in IMG/M
3300030294II_Fen_E3 coassemblyEnvironmentalOpen in IMG/M
3300031707Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031999Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20EnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300032092Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300032156Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0EnvironmentalOpen in IMG/M
3300032275Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottomEnvironmentalOpen in IMG/M
3300032516Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0EnvironmentalOpen in IMG/M
3300033233Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottomEnvironmentalOpen in IMG/M
3300033557Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_BEnvironmentalOpen in IMG/M
3300033816Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005EnvironmentalOpen in IMG/M
3300034012Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027EnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034071Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110EnvironmentalOpen in IMG/M
3300034105Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127EnvironmentalOpen in IMG/M
3300034112Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1021261023300000101MarineAAGATSVTINAAIAVPGSVTAIPASSTIVFTQFPEVLVKLNFAIHSYQDATAV*
TB18AUG2009E_01390723300000203FreshwaterITISAAVAVPGGVTAIPSGSTIVFTNYPEILVKFNQGTHGYYYPVTV*
B570J29032_10928116823300002408FreshwaterLNAAVAVPGGVTAIPSASTIVFTVYPEVLVKANLLVHAYYSSTSGQ*
JGI25909J50240_112434113300003393Freshwater LakeSVAAAAGATTVTINSAIAVPGSVTAIPAASTIVFTQYPEMLVKLNFGTHSYYTGTAV*
JGI25913J50563_100948343300003431Freshwater LakeTTVTINSAIAVPGSVTAIPAASTIVFTQYPEMLVKLNFGTHSYYTGTAV*
Ga0007846_100692413300003797FreshwaterAISAGATSGTLNVAPAVPGGVTAIPSASTIVFTNYPEVLVKLNFGIHEYYTATAV*
Ga0007880_100883613300003827FreshwaterAPAVPGGVTAIPSASTIVFTNYPEVLVKLNFGIHEYYTATAV*
Ga0007746_139761413300004763Freshwater LakeATSVTINSTIAVPGSVTAIPSASTIVFTQYPEMLVKLNFGTHSYYTATAV*
Ga0007758_1136295723300004790Freshwater LakeVPGSVTAIPSSSTIVFTQFPEVLVKFNQALHGYYSATGA*
Ga0007759_1016896723300004836Freshwater LakeIAVPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA*
Ga0068883_154173723300005419Freshwater LakeAGDTSITLNAAIAVPGSVVAIPASSTVIFTIYRELLVKLNVLTHGYYSSVTA*
Ga0049083_1011312013300005580Freshwater LenticVTINSAIAVPGSVVAIPASSTIVFTQYPEVLVKFNQALHGYYSATGA*
Ga0049080_1018184323300005582Freshwater LenticVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA*
Ga0049080_1023652213300005582Freshwater LenticSAIAVPGSVVAIPSSSTIVFIQYPEVLVKFNQALHGYYSATGA*
Ga0007882_1004693413300006104FreshwaterPGGVTAIPSASTIVFTNYPEVLVKLNFGIHEYYTATAV*
Ga0075461_1016092513300006637AqueousSVTAIPSASTVVFTVYPEILVKINVLTHGYYSSVTA*
Ga0098041_112974813300006928MarineSAIAVPGSVTAIPADSTILFREYPEVLVKLNFEIHSYQDATAV*
Ga0075460_1017178413300007234AqueousIAVPGSVTAIPAASTVVFTIYRELLVKINVLTHGYYSSVTA*
Ga0099848_127472423300007541AqueousDTSITLNAAIAVPGSVTAIPSASTVVFTVYPEILVKINVLTHGYYSSVTA*
Ga0099846_114341513300007542AqueousTLNAAVAVPGGVTAIPASSTVVFTIYRELLVKLNVLTHGYYSSVTA*
Ga0114364_100491313300008267Freshwater, PlanktonVTTAAAAAATSVTINATIAVPGSVTAIPSASTIVFTQFPEVLVKFNQALHGYYSATGA*
Ga0114364_113041613300008267Freshwater, PlanktonVTTAAAAAATSVTINATIAVPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA*
Ga0114880_113169323300008450Freshwater LakePGSVTAIPSASTILFTQYPEMLVKLNFGTHSYYTATAV*
Ga0105098_1068474023300009081Freshwater SedimentIAAPGSVVAIPSSSTIVFTVYRELLVKVNVLTHGYYSSVTA*
Ga0114977_1053517913300009158Freshwater LakeAGATTVTINAAIAVPGSVTAIPSASTIVFIQYPEVLVKLNQGLHGYYSATGA*
Ga0114919_1026249023300009529Deep SubsurfaceFVDTAAAAGATSITLNAAIAVPGSVVAIPAASTVVFTIYRELLVKINLLTHGYYSSATA*
Ga0133913_1012902113300010885Freshwater LakeNSGGYAAGTTSIAINAAIAVPGSVTAIPSSSTIVFTSYPEVLVKINFGIHNYYAA*
Ga0153799_105778323300012012FreshwaterAATSVTINSAIAVPGSVTAIPSASTIVFIQYPEVLVKLNQGLHGYYSATGA*
Ga0157540_15507623300012739FreshwaterAIAVPGSVTAIPSSSTIVFTQFPEVLVKLNQGLHGYYSATGA*
Ga0157529_16370313300012741FreshwaterVTAIPSSSTIVFTQFPEVLVKFNQALHGYYSATGA*
Ga0138269_137134433300012778Freshwater LakeSVTIDSAIAVPGSVTAIPSSSTVVFTVYNEILVKVNLLVHGYYSSATA*
Ga0157528_12223013300012785FreshwaterVTAIPSSSTIVFTQFPEVLVKLNQGLHGYYSATGA*
Ga0129343_141607513300012967AqueousNAAVAVPGGVTAIPASSTVVFTIYRELLVKLNVLTHGYYSSVTA*
(restricted) Ga0172363_1084331323300013130SedimentSFLPISYAAGSTSLVLNAAIAAAGVTSIPSGATVVFTVYPEILVKANLLVHAYYSSTSGQ
Ga0170791_1492392723300013295FreshwaterVPGSVTAIPSSSTVVFTQYPELLVKLNFGTHSYYTGTAV*
Ga0177922_1022362123300013372FreshwaterPGSVTAIPSSSTIVFTQYPEVLVKFNQALHGYYSATGA*
Ga0181338_104599913300015050Freshwater LakePGSVTAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA*
Ga0181339_1001437103300017700Freshwater LakeNSAIAVPGSVTAIPSSSTIVFTQFPEVLVKFNQALHGYYSATGA
Ga0181364_100830733300017701Freshwater LakeVTINATIAVPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA
Ga0181364_102251923300017701Freshwater LakeAIAVPGSVTAIPSSSTIVFTQFPEVLVKFNQALHGYYSATGA
Ga0181364_107454623300017701Freshwater LakeVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA
Ga0181350_107138013300017716Freshwater LakeAVPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA
Ga0181350_110549413300017716Freshwater LakeVTINSAIAVPGSVVAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA
Ga0181350_116357513300017716Freshwater LakeSAAATSVTINSAIAVPGSVTAIPSASTIVFTQYPEVLVKLNQALHGYYSATGA
Ga0181347_105217313300017722Freshwater LakeAATSVTINSAIAVPGSVVAIPSASTIVFTQYPEVLVKLNQALHGYYSATGA
Ga0181352_108836313300017747Freshwater LakeGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA
Ga0181344_117596723300017754Freshwater LakeAVAGATSVTLNAAIAVPGSVVAIPAASTIIFTVYPEVLVKINLLTHGYYSSATA
Ga0181356_106293923300017761Freshwater LakeAIDVPGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA
Ga0181356_123062523300017761Freshwater LakeSVTINSAIAVPGSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA
Ga0181357_109847023300017777Freshwater LakePGSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA
Ga0181349_109387623300017778Freshwater LakeTINSAIAVPGSVVAIPASSTIVFTQFPEVLVKFNQSLHGYYSATGA
Ga0181346_107470833300017780Freshwater LakeINSAIAVPGSVVAIPASSTIVFTQFPEVLVKFNQSLHGYYSATGA
Ga0181346_109316823300017780Freshwater LakeVPGSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA
Ga0181346_110080223300017780Freshwater LakeTINSAIAVPGSVVAIPSASTIVFTQYPEVLVKLNQALHGYYSATGA
Ga0181348_113671223300017784Freshwater LakeAVPGSVVAIPASSTIVFTQFPEVLVKFNQSLHGYYSATGA
Ga0181348_131222113300017784Freshwater LakeIDVPGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTD
Ga0181355_136656623300017785Freshwater LakeTSVTINSAIAVPGSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA
Ga0180433_1033054813300018080Hypersaline Lake SedimentTVELNAAIAVPGGVTAIPAASTIVFTVYPEVLVKANLLVHAYYSSTSGQ
Ga0181361_10602513300019783Freshwater LakeGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA
Ga0181359_103001443300019784Freshwater LakeAIAVPGSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA
Ga0211732_136955823300020141FreshwaterAGATTVTINSAIAVPGSVTAIPSASTIVFTQYPEMLVKLNFGTHSYYTATAV
Ga0211729_10800422173300020172FreshwaterAGATTVELNAAIAVPGGVTTIPSASTIVFTVYPEVLVKANLLVHAYYSSTSGQ
Ga0194134_1031089423300020179Freshwater LakeSVTINAAIDVPGSVTAIPASSTIIFTIYRELLVKLNVLTHGYYSSVTA
Ga0208050_101614213300020498FreshwaterNSAIAVPGSVTAIPAASTIVFTQYPEMLVKLNFGTHSYYTGTAV
Ga0208233_104306813300020529FreshwaterTLNAAIAVPGSVTAIPSASTVVFTIYRELLVKLNVLTHGYYSSVTA
Ga0208235_100574443300020530FreshwaterVPGSVTAIPSASTVVFTIYRELLVKLNVLTHGYYSSVTA
Ga0207939_102452013300020536FreshwaterGDTSLTLNAAIAVPGSVTAIPSASTVVFTIYRELLVKLNVLTHGYYSSVTA
Ga0208486_101212033300020556FreshwaterAIAVPGSVTAIPSASTVVFTIYRELLVKLNVLTHGYYSSVTA
Ga0214165_109904213300021137FreshwaterNVAVNVPGSITAIPSASTILFTMYPEVLVKINFGIHEYYTATAV
Ga0214168_107957823300021140FreshwaterAAPTTAFAAGSTLVFTQYPEVLVKFNFGYHGYYSATAV
Ga0194048_1018031413300021519Anoxic Zone FreshwaterAAAAGALSVTINATIAVPGSVTAIPAASTIVFTVYPEILVKTNLLIHGYYSSATA
Ga0222714_1045246623300021961Estuarine WaterNVAVAVPGSVTDIPAASTVIVTMYPEVLVKLNFAVHSYYTATAV
Ga0222713_1026822213300021962Estuarine WaterVTAIPAASSIVFTVYRELLVKLNVLTHGYYSSVTA
Ga0222712_1019934233300021963Estuarine WaterINAAIDVPGSVTAIPAASSIVFTVYRELLVKLNVLTHGYYSSVTA
Ga0222712_1030779023300021963Estuarine WaterAIAVPGSVVAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA
Ga0212030_106651123300022053AqueousVDTAAAAGDTSITLNAAVAVPGGVTAIPASSTVVFTIYRELLVKLNVLTHGYYSSVTA
Ga0181353_109747713300022179Freshwater LakeVPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA
Ga0181354_116582223300022190Freshwater LakeTIAVPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA
Ga0181354_118757613300022190Freshwater LakeTAASAAATSVTINSAIAVPGSVTAIPSASTIVFIQYPEVLVKLNQGLHGYYSATGA
Ga0181354_121816513300022190Freshwater LakeTINVAIAVPGSVVAIPASSTIIFTQFPEVLVKFNQALHGYYSATGA
Ga0181354_124752513300022190Freshwater LakeATSVTINSAIAVPGSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA
Ga0196905_107967523300022198AqueousSITLNAAVAVPGGVTAIPASSTVVFTIYRELLVKLNVLTHGYYSSVTA
Ga0181351_116667823300022407Freshwater LakeSTINSAIAVPGSVTAIPSSSTIVFTQFPEVLVKFNQALHGYYSATGA
Ga0181351_119207813300022407Freshwater LakeNATSVTINSAIAVPGSVVAIPASSTIVFTQFPEVLVKLNQALHGYYSATGA
Ga0181351_122258323300022407Freshwater LakeAATSVTINSAIAVPGSVVAIPASSTIVFTQYPEVLVKLNQALHGYYSATGA
Ga0212119_108535413300022543FreshwaterNSAIAVPGSVTAIPSASTILFTQYPEMLVKLNFGTHSYYTATAV
Ga0214923_1054530413300023179FreshwaterAVPGSVVAIPSGSTIVFTQYPEVLVKFNQGQHAYYSATAMA
Ga0255147_104834423300024289FreshwaterSAIAVPGGVTAIPSSSTIVFTQYPEVLVKLNFGTHSYYTGTAV
Ga0256337_102010843300024573FreshwaterAIAVPGGVTAIPSSSTIVFTQYPEVLVKLNFGTHSYYTGTAV
Ga0255272_101000873300024866FreshwaterAVPGGVTAIPSSSTIVFTQYPEVLVKLNFGTHSYYTGTAV
Ga0208502_101920313300025339FreshwaterVPGGVTAIPSASTIVFTNYPEVLVKLNFGIHEYYTATAV
Ga0208383_101591413300025357FreshwaterGVTAIPSASTIVFTNYPEVLVKLNFGIHEYYTATAV
Ga0208257_101892723300025389FreshwaterVAVPGGVTAIPSASTIVFTNYPEVLVKLNFGIHEYYTATAV
Ga0208739_101432433300025426FreshwaterSGTLNVAPAVPGGVTAIPSASTIVFTNYPEVLVKLNFGIHEYYTATAV
Ga0208744_110468123300025450FreshwaterNVPGSVTAIPSASTIIFTMYPEVLVKINFGLHEYYNATAV
Ga0208019_117454713300025687AqueousTAAAAGDTSITLNAAIAVPGSVTAIPSASTVVFTVYPEILVKINVLTHGYYSSVTA
Ga0208542_112709213300025818AqueousIAVPGSVTAIPAASTVVFTIYRELLVKINVLTHGYYSSVTA
Ga0209182_1021076813300025843Lake SedimentINAAIAVPPSVVAIPAGSTIVFTQYPEVFCKVQFGAHSYYTATGA
Ga0209552_119843613300027563Freshwater LakeTINSAIAVPGSVVAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA
Ga0209651_120587213300027581Freshwater LakeNSAIAVPGSVTAIPSASTIVFIQYPEVLVKLNQGLHGYYSATGA
Ga0209357_107918023300027656Freshwater LakeTINAAIAVPGSVTAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA
Ga0209769_114136823300027679Freshwater LakeAAATSVTINATIAVPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA
Ga0209188_106869233300027708Freshwater LakeIAVPGSVTAIPSSSTVVFTVYNEILVKVNLLVHGYYSSATA
Ga0209442_109842223300027732Freshwater LakePGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA
Ga0209088_1029722223300027763Freshwater LakePGSVVAIPSSSTIVFTQYPEVLVKFNQGQHEYYSATAMA
Ga0209829_1023014323300027777Freshwater LakeAIAVPGSVTAIPSGSTIVFTMYPEVLVKFNQGTHGYYYPVAV
Ga0209353_1002707813300027798Freshwater LakeINSAIAVPGSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA
Ga0209353_1004771713300027798Freshwater LakeFVTVAAAAGDTSVTINAAIDVPGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA
Ga0209229_1004466813300027805Freshwater And SedimentAGDTSVTINAAIAVPGSVTAIPAASSIVFTVYRELLVKLNVLTHGYYSSVTA
Ga0209229_1024228413300027805Freshwater And SedimentAASAGATTVELNAAVAVPGGVTAIPASSTIVFTVYPEVLVKANLLVHAYYSSTSGQ
Ga0209354_1008786523300027808Freshwater LakeAAIDVPGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA
Ga0255255_102342123300028085FreshwaterSVTAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA
Ga0238435_10456333300029349FreshwaterFVATAASAGATSVTLNAAIAVPGSVVAIPSASTIVFTQYPEILVKMNLLVHGYYSSATA
Ga0119945_101382823300029933AquaticGSVTAIPSGATIIFTIYRELLVKLNVLTHGYYSSVTA
Ga0311349_1176239523300030294FenIAVPGSITAIPSSSTIVFTSYPEVLVKINFGIHNYYAA
Ga0315291_1088356113300031707SedimentGSVTAIPSASTIIFTQYPEMKVKLNFGTHSYYTATAV
Ga0315900_1064950613300031787FreshwaterAAATSVTINSAIAVPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA
Ga0315274_1086384423300031999SedimentTTVTLNAAIAVPGSVTAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA
Ga0315274_1165689923300031999SedimentVTINAAIAVPGSVTAIPSASTIIFTQYPEMKVKLNFGTHSYYTATAV
Ga0315284_1066723013300032053SedimentAVPGSVVAIPASSTIVFTQYPEVLVKFNQALHGYYSATGA
Ga0315284_1078325123300032053SedimentIAVPGSVTSIPAASTIVFTQYPEVKVKFDFGFHAYYAA
Ga0315905_1012233853300032092FreshwaterVTTAASAAATSVTINSAIAVPGSVVAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA
Ga0315905_1037031633300032092FreshwaterSEIPSGATIVFTQYTEALVKLNFSQHQYYNATAVNAS
Ga0315903_1072957013300032116FreshwaterAAAAGDTSVTINAAVAVPGGVTSIPSASTIVFTQYPEVLIKLNFGTHSYYTGTGV
Ga0315295_1202851013300032156SedimentGSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA
Ga0315270_1083184413300032275SedimentGSVVAIPSASTIVFTQYPEVLVKLNQALHGYYSATGA
Ga0315273_1171787923300032516SedimentATTVTINAAIAVPGSVTAIPIASTIIFTQYPEMKVKLNFGTHSYYTATAV
Ga0334722_1113997113300033233SedimentSVTINAAIAVPGSVVAIPSASTIVFTQYPEVLVKLNQALHGYYSATGA
Ga0316617_10235090223300033557SoilLNAAIAVPGGVTAIPSSSTVVFTVYPEILVKMNLLVHGYYSSTTA
Ga0334980_0014374_3257_34183300033816FreshwaterAAGDTSVTINAAIDVPGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA
Ga0334986_0231369_875_10153300034012FreshwaterTINSAIAVPGGITAIPAASTILFTQYPEMLVKLNFGTHSYYTGTAV
Ga0334986_0548284_404_5413300034012FreshwaterMNAAIAVPGSVTAIPSSSTVIFTVFPEILVKVNLLVHGYYSSATA
Ga0335019_0475309_1_1773300034066FreshwaterVSAAAAAGATTVTINSAIAVPGGITAIPAASTILFTQFPEMLVKLNFGTHSYYTGTAV
Ga0335028_0050914_2660_28093300034071FreshwaterNSVTINAAIDVPGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA
Ga0335035_0170679_1192_13593300034105FreshwaterAASAAATSVTINSAIAVPGAVTAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA
Ga0335035_0652698_430_5463300034105FreshwaterPGSVTAIPSASTVVFTIYRELLVKLNVLTHGYYSSVTA
Ga0335066_0067661_2184_23303300034112FreshwaterSVTINAAIDVPGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA


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