Metagenome Family F056465

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F056465
Family Type	Metagenome
Number of Sequences	137
Average Sequence Length	61 residues
Representative Sequence	MKFGLRGLLLLLAVVLFIVGALMDNGDTKTDVLYWGLAVFAASFIVESLPLGNMGRRDRS
Number of Associated Samples	107
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	42.34 %
% of genes near scaffold ends (potentially truncated)	30.66 %
% of genes from short scaffolds (< 2000 bps)	81.02 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (88.321 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.088 % of family members)
Environment Ontology (ENVO)	Unclassified (29.927 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.255 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 43.18% β-sheet: 0.00% Coil/Unstructured: 56.82%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF13302	Acetyltransf_3	27.01
PF02518	HATPase_c	21.17
PF02625	XdhC_CoxI	8.76
PF12802	MarR_2	3.65
PF04264	YceI	2.92
PF01197	Ribosomal_L31	2.92
PF03358	FMN_red	2.19
PF13419	HAD_2	1.46
PF07676	PD40	1.46
PF01061	ABC2_membrane	1.46
PF13714	PEP_mutase	1.46
PF00389	2-Hacid_dh	1.46
PF02826	2-Hacid_dh_C	1.46
PF04430	DUF498	0.73
PF04542	Sigma70_r2	0.73
PF01186	Lysyl_oxidase	0.73
PF13478	XdhC_C	0.73
PF13242	Hydrolase_like	0.73
PF10397	ADSL_C	0.73
PF13732	DUF4162	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG1975	Molybdoenzyme maturation factor PaoD (Mo cofactor insertion), XdhC/CoxF family	Posttranslational modification, protein turnover, chaperones [O]	8.76
COG0254	Ribosomal protein L31	Translation, ribosomal structure and biogenesis [J]	2.92
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	2.92
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.73
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.73
COG1504	Uncharacterized conserved protein, DUF498 domain	Function unknown [S]	0.73
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.73
COG3737	Uncharacterized protein, contains Mth938-like domain	Function unknown [S]	0.73
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.32 %
Unclassified	root	N/A	11.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.32 %
Unclassified	root	N/A	11.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.32 %
Unclassified	root	N/A	11.68 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	73.72 %
Unclassified	root	N/A	11.68 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	71.53 %
Unclassified	root	N/A	11.68 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.73 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	47.45 %
Unclassified	root	N/A	11.68 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.19 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	45.26 %
Unclassified	root	N/A	11.68 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.46 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.73 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	45.26 %
Unclassified	root	N/A	11.68 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.73 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.73 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.73 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	45.26 %
Unclassified	root	N/A	11.68 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.73 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.73 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.73 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	45.26 %
Unclassified	root	N/A	11.68 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.73 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.73 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.73 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_102562290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550	Open in IMG/M
3300004114\|Ga0062593_100374828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1258	Open in IMG/M
3300004157\|Ga0062590_100037809	All Organisms → cellular organisms → Bacteria	2537	Open in IMG/M
3300004463\|Ga0063356_105512504	Not Available	543	Open in IMG/M
3300004479\|Ga0062595_100909035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	743	Open in IMG/M
3300004479\|Ga0062595_102671522	Not Available	502	Open in IMG/M
3300005176\|Ga0066679_11058958	Not Available	502	Open in IMG/M
3300005354\|Ga0070675_101300873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	670	Open in IMG/M
3300005471\|Ga0070698_100024518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6294	Open in IMG/M
3300005543\|Ga0070672_100871943	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300005547\|Ga0070693_100797430	Not Available	700	Open in IMG/M
3300005549\|Ga0070704_100476993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1079	Open in IMG/M
3300005552\|Ga0066701_10337807	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300005555\|Ga0066692_10602496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	690	Open in IMG/M
3300005556\|Ga0066707_10737390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300005560\|Ga0066670_10294977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	986	Open in IMG/M
3300005564\|Ga0070664_102026129	All Organisms → cellular organisms → Bacteria → Terrabacteria group	546	Open in IMG/M
3300005578\|Ga0068854_100313244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1273	Open in IMG/M
3300005614\|Ga0068856_100811606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	955	Open in IMG/M
3300005840\|Ga0068870_11047490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584	Open in IMG/M
3300006038\|Ga0075365_10732737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	698	Open in IMG/M
3300006796\|Ga0066665_10112507	All Organisms → cellular organisms → Bacteria	2015	Open in IMG/M
3300006904\|Ga0075424_100186964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2198	Open in IMG/M
3300007004\|Ga0079218_10821337	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300007004\|Ga0079218_11010196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	835	Open in IMG/M
3300007004\|Ga0079218_12506900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	610	Open in IMG/M
3300009012\|Ga0066710_100211415	All Organisms → cellular organisms → Bacteria	2772	Open in IMG/M
3300009012\|Ga0066710_104779953	Not Available	506	Open in IMG/M
3300009094\|Ga0111539_12404497	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300009094\|Ga0111539_13043725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300009098\|Ga0105245_11791292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	667	Open in IMG/M
3300009137\|Ga0066709_100166379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2846	Open in IMG/M
3300009137\|Ga0066709_100169432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2824	Open in IMG/M
3300009137\|Ga0066709_102220088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	756	Open in IMG/M
3300009156\|Ga0111538_11010612	Not Available	1052	Open in IMG/M
3300009156\|Ga0111538_13604191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	537	Open in IMG/M
3300009545\|Ga0105237_11330641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	725	Open in IMG/M
3300010038\|Ga0126315_10242614	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300010038\|Ga0126315_10734309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	646	Open in IMG/M
3300010039\|Ga0126309_10343696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	876	Open in IMG/M
3300010039\|Ga0126309_10762656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	628	Open in IMG/M
3300010039\|Ga0126309_10967501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
3300010041\|Ga0126312_11045177	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300010041\|Ga0126312_11444815	Not Available	510	Open in IMG/M
3300010166\|Ga0126306_10987609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	685	Open in IMG/M
3300011400\|Ga0137312_1000498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3132	Open in IMG/M
3300012201\|Ga0137365_11119160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	566	Open in IMG/M
3300012204\|Ga0137374_10008623	All Organisms → cellular organisms → Bacteria	12056	Open in IMG/M
3300012204\|Ga0137374_10017185	All Organisms → cellular organisms → Bacteria	8285	Open in IMG/M
3300012204\|Ga0137374_10041771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	4846	Open in IMG/M
3300012204\|Ga0137374_10518404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	922	Open in IMG/M
3300012212\|Ga0150985_105920316	All Organisms → cellular organisms → Bacteria	5427	Open in IMG/M
3300012353\|Ga0137367_10039341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3609	Open in IMG/M
3300012355\|Ga0137369_10644640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	733	Open in IMG/M
3300012356\|Ga0137371_10931576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	660	Open in IMG/M
3300012360\|Ga0137375_10016770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8575	Open in IMG/M
3300012469\|Ga0150984_117337820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1057	Open in IMG/M
3300012530\|Ga0136635_10004198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	4562	Open in IMG/M
3300012895\|Ga0157309_10368136	Not Available	505	Open in IMG/M
3300012898\|Ga0157293_10007974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1616	Open in IMG/M
3300012910\|Ga0157308_10154631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	735	Open in IMG/M
3300013296\|Ga0157374_11120666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	808	Open in IMG/M
3300015077\|Ga0173483_10331852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	757	Open in IMG/M
3300015200\|Ga0173480_11093382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	531	Open in IMG/M
3300015372\|Ga0132256_100250165	All Organisms → cellular organisms → Bacteria	1841	Open in IMG/M
3300015374\|Ga0132255_104468546	Not Available	593	Open in IMG/M
3300018027\|Ga0184605_10009052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3743	Open in IMG/M
3300018027\|Ga0184605_10120189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1169	Open in IMG/M
3300018027\|Ga0184605_10261757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	785	Open in IMG/M
3300018031\|Ga0184634_10088531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1338	Open in IMG/M
3300018052\|Ga0184638_1061399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1373	Open in IMG/M
3300018056\|Ga0184623_10046184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1982	Open in IMG/M
3300018061\|Ga0184619_10001883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7490	Open in IMG/M
3300018061\|Ga0184619_10024939	All Organisms → cellular organisms → Bacteria	2484	Open in IMG/M
3300018067\|Ga0184611_1244121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	636	Open in IMG/M
3300018071\|Ga0184618_10071946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1306	Open in IMG/M
3300018071\|Ga0184618_10272365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	718	Open in IMG/M
3300018071\|Ga0184618_10298058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	686	Open in IMG/M
3300018072\|Ga0184635_10298392	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300018074\|Ga0184640_10450635	Not Available	572	Open in IMG/M
3300018075\|Ga0184632_10109202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1215	Open in IMG/M
3300018075\|Ga0184632_10320640	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300018076\|Ga0184609_10002813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	5801	Open in IMG/M
3300018076\|Ga0184609_10143604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1096	Open in IMG/M
3300018081\|Ga0184625_10134252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1290	Open in IMG/M
3300018422\|Ga0190265_10033499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4304	Open in IMG/M
3300018466\|Ga0190268_11489048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	587	Open in IMG/M
3300019362\|Ga0173479_10752055	Not Available	533	Open in IMG/M
3300019767\|Ga0190267_11574693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512	Open in IMG/M
3300019869\|Ga0193705_1025204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1288	Open in IMG/M
3300019884\|Ga0193741_1034791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1300	Open in IMG/M
3300021073\|Ga0210378_10012576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3529	Open in IMG/M
3300021073\|Ga0210378_10297124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	607	Open in IMG/M
3300021080\|Ga0210382_10010417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3144	Open in IMG/M
3300021445\|Ga0182009_10521153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	628	Open in IMG/M
3300022756\|Ga0222622_11007697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	612	Open in IMG/M
3300024055\|Ga0247794_10023672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1544	Open in IMG/M
3300025901\|Ga0207688_10537473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	734	Open in IMG/M
3300025904\|Ga0207647_10777854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300025908\|Ga0207643_10616725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	699	Open in IMG/M
3300025926\|Ga0207659_10841162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	789	Open in IMG/M
3300025927\|Ga0207687_11713798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	538	Open in IMG/M
3300025930\|Ga0207701_10671286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	879	Open in IMG/M
3300025932\|Ga0207690_11232839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	625	Open in IMG/M
3300025944\|Ga0207661_10100762	All Organisms → cellular organisms → Bacteria	2425	Open in IMG/M
3300025961\|Ga0207712_11142296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	694	Open in IMG/M
3300026538\|Ga0209056_10210365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1414	Open in IMG/M
3300026548\|Ga0209161_10506592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	534	Open in IMG/M
3300027886\|Ga0209486_10525325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	739	Open in IMG/M
3300028380\|Ga0268265_11853734	All Organisms → cellular organisms → Bacteria → Terrabacteria group	610	Open in IMG/M
3300028589\|Ga0247818_10241667	Not Available	1192	Open in IMG/M
3300028608\|Ga0247819_10728669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	608	Open in IMG/M
3300028711\|Ga0307293_10143216	Not Available	761	Open in IMG/M
3300028713\|Ga0307303_10084602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	712	Open in IMG/M
3300028717\|Ga0307298_10192387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	600	Open in IMG/M
3300028719\|Ga0307301_10121571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	834	Open in IMG/M
3300028719\|Ga0307301_10221211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	616	Open in IMG/M
3300028719\|Ga0307301_10294444	Not Available	532	Open in IMG/M
3300028720\|Ga0307317_10079952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1071	Open in IMG/M
3300028720\|Ga0307317_10219955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	641	Open in IMG/M
3300028722\|Ga0307319_10046405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1361	Open in IMG/M
3300028722\|Ga0307319_10155075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	744	Open in IMG/M
3300028778\|Ga0307288_10059763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1329	Open in IMG/M
3300028811\|Ga0307292_10309058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	663	Open in IMG/M
3300028814\|Ga0307302_10130283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1212	Open in IMG/M
3300028814\|Ga0307302_10317257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	767	Open in IMG/M
3300028819\|Ga0307296_10157214	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300028828\|Ga0307312_10200989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1280	Open in IMG/M
3300028876\|Ga0307286_10229138	Not Available	678	Open in IMG/M
3300028876\|Ga0307286_10335158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	562	Open in IMG/M
3300028878\|Ga0307278_10000259	All Organisms → cellular organisms → Bacteria	27279	Open in IMG/M
3300028878\|Ga0307278_10041740	All Organisms → cellular organisms → Bacteria	2086	Open in IMG/M
3300028880\|Ga0307300_10028167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1515	Open in IMG/M
3300028884\|Ga0307308_10018464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3182	Open in IMG/M
3300031731\|Ga0307405_10145793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1658	Open in IMG/M
3300032002\|Ga0307416_101683121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	739	Open in IMG/M
3300034115\|Ga0364945_0070760	Not Available	996	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.10%
Host-Associated	Host-Associated	21.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.85%
Plants	Host-Associated → Plants	21.90%
Aquatic	Environmental → Aquatic	18.25%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.12%
Sediment	Environmental → Aquatic → Sediment	15.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.30%
Freshwater	Environmental → Aquatic → Freshwater	2.92%
Floodplain	Environmental → Terrestrial → Floodplain	0.73%
Roots	Host-Associated → Plants → Roots	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	15.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.11%
Loam	Environmental → Terrestrial → Soil → Loam	2.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.46%
Ice	Environmental → Aquatic → Freshwater → Ice	0.73%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.73%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.23%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	15.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.76%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.19%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.46%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.73%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.73%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.09%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	13.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.57%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	5.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.19%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.19%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.19%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.46%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.46%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.73%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.73%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.73%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.73%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.73%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.73%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.73%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.73%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.73%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300011400	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT133_2	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012530	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ85 (21.06)	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1025622902	3300000956	Soil	MNFGLKALLVLLAIVLFIVGALSDTGDTKTDLLYWGLAVLAASFIVESLPLGSMTRRRSP
Ga0062593_1003748283	3300004114	Soil	MMKFGIKGLLLVLAVVLFIVGALSDPGDNKVDLLYWGLAVFAAALIVESIPLGNMTAGRKQQ*
Ga0062590_1000378093	3300004157	Soil	MKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGNRG*
Ga0063356_1055125042	3300004463	Arabidopsis Thaliana Rhizosphere	MMKFGLKGLLLLLAVVLFIVGALSDDDANKLDLLYWGLAVFAAAFIVESIPLGNMMADRNRER*
Ga0062595_1009090352	3300004479	Soil	MKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGRRNT*
Ga0062595_1026715221	3300004479	Soil	SPQRRGESGAMNFGLRGLLLLLAVVLFVVGALMDNGDTKTDVLYWGLAVFAASFIVESIPLGNMTRRDNS*
Ga0066679_110589581	3300005176	Soil	MTIGLKGLLLLLAIVLFIVGALMSNTNETRGDLLFWGLAVFAASFVIESLPLGNMMRTRTRERP*
Ga0070675_1013008733	3300005354	Miscanthus Rhizosphere	GLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGRRNT*
Ga0070698_1000245187	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MMNFGLKGLLLVLAVVLFIVGALSDDDANKLDLLYWGLGVFAAAFVIESIPLGNMMAGRKR*
Ga0070672_1008719433	3300005543	Miscanthus Rhizosphere	RRDESGAMNIGFRGLLLLLAVVLFVVGALMDNGDTKTDVLYWGLAVFAASFIVESLPLGNMTGRDRT*
Ga0070693_1007974302	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNMTGRDRT
Ga0070704_1004769932	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MKFGLRGLLLLLAVVFFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGRRNT*
Ga0066701_103378072	3300005552	Soil	MNVGFRGLLLLLAIVLFIVGALTDSHRQDILFWGLAVFAASFLVDSIPLGSMRTRPRA*
Ga0066692_106024962	3300005555	Soil	RDCPRGPEQRAMNVGFRGLLLLLAIVLFIVGALTDSHRQDILFWGLAVFAASFLVDSIPLGSMRTRPRA*
Ga0066707_107373901	3300005556	Soil	LLLAIVLFIVGALTDSHRQDILFWGLAVFAASFLVDSIPLGSMRTRPRA*
Ga0066670_102949772	3300005560	Soil	MNFGLRALLILLAIVLFIVGALSDNGDTKTDLLYWGLAVLAASFIVESIPLGSMTSRNRNP*
Ga0070664_1020261291	3300005564	Corn Rhizosphere	MKFGLRGLLLLLAVVLFIVGALMDNGDTKTDVLYWGLAVFAASFIVESLPLGNMTGRDRT
Ga0068854_1003132443	3300005578	Corn Rhizosphere	MKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGRNT*
Ga0068856_1008116062	3300005614	Corn Rhizosphere	MKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGRRNA*
Ga0068870_110474901	3300005840	Miscanthus Rhizosphere	MTNFGFRGLLLLLAVVLFVVGALMDNGDTKTDVLYWGLAVFAASFIVESLPLGNMTGRDRT*
Ga0075365_107327371	3300006038	Populus Endosphere	MNFGLRGLLLLLAVVLFVVGALTDPGETKQDLQYWGLAVFAASFVAGHIPFGRMPGGRNRTS*
Ga0066665_101125072	3300006796	Soil	MNVGAKGLVLLLAVVLFIVGALMDSSNDNRVDLLYWGLAVLSASFILESLPLGSMMRRRTP*
Ga0075424_1001869643	3300006904	Populus Rhizosphere	MKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGRRNS*
Ga0079218_108213372	3300007004	Agricultural Soil	MMNIGLKGLLLLLAVVLFIVGALSDPGDTKTDLLYWGLAVFAAALIVESLPLTGGWGGRRDRT*
Ga0079218_110101963	3300007004	Agricultural Soil	QREPGGMTNFGLRALLLVLAVVLFIVGALMDAGDTKLDILYWGLAVFAASFVAESVPLGNITRDRDRT*
Ga0079218_125069002	3300007004	Agricultural Soil	MMGLGAKGLLLLLAVVLFIVGALSDDAERRVDLLYWGLAVFAASHIVESLPMIGP
Ga0066710_1002114152	3300009012	Grasslands Soil	MNVGAKGLGPLLAVVLFIVGALMDSSNDNRVDLLYWGLAVLSASFILESLPLGSMMRRRT
Ga0066710_1047799532	3300009012	Grasslands Soil	MMKFGLRGLLLLLAVVLFIVGALSDSSNREDLLFWGLAVFAASFVVDSIPLGNMMATRTRER
Ga0111539_124044971	3300009094	Populus Rhizosphere	MNFGLRGLLLLLAVVLFVVGALTDPGETKQDLQYWGLAVFAASFVAGRIPFGNMPGGRSRS*
Ga0111539_130437251	3300009094	Populus Rhizosphere	PSGMNFGLRGLLLLLAVVLFVVGALTDPGETKQDLLYWGMAVFAASFVAGRIPFGRMPGERRR*
Ga0105245_117912921	3300009098	Miscanthus Rhizosphere	GLLLLLAVVLFVVGALMDNGDTKTDVLYWGLAVFAASFIVESLPLGNMGRGDRS*
Ga0066709_1001663797	3300009137	Grasslands Soil	VGAKGLVLLLAVVLFIVGALMDSSNDNRVDLLYWGLAVLSASFILESLPLGSMMRRRTP*
Ga0066709_1001694326	3300009137	Grasslands Soil	MNIGLKGLLLLLAVVLFVVGALMDTSNSNKVDLLYWGLAVFSASFIVESLPLGSMMRKRTP*
Ga0066709_1022200882	3300009137	Grasslands Soil	MMKFGLRGLLLLLAVVLFIVGALSDSSNREDLLFWGLAVFAASFVVDSIPLGNMMATRTRER*
Ga0111538_110106122	3300009156	Populus Rhizosphere	MNFGLRGLLLLLAVVLFVVGALTDPGETKQDLLYWGLAVFAASFVAGRIPFGRMPGERRR
Ga0111538_136041912	3300009156	Populus Rhizosphere	MNFGLRGLLLLLAVVLFVVGALMDSGETKQDLLYWGLAVFAASFVAGHIPFGRLPGD
Ga0105237_113306413	3300009545	Corn Rhizosphere	MKFGLRGLLLLLAVVLFIVGALMDTGDTETDILYWGLAVFAASFIVESLPLGNVGRRNT*
Ga0126315_102426142	3300010038	Serpentine Soil	MMNLGLKALLLLLAIVLFIVGALSDDNKDDLLFWGLAVFAASFIVESLPLGNMMGTRSRDRV*
Ga0126315_107343091	3300010038	Serpentine Soil	MNFGLRGLLLLLAAVLFVVGALMDPGDTKVDLLYWGLAVFAASFVAGHIPFGR
Ga0126309_103436962	3300010039	Serpentine Soil	MGAMMNLGLKALLVLLAIVLFIVGALSDDNRDDLLFWGLAVFAASFVVESLPLGNMMGTRSRDRV*
Ga0126309_107626563	3300010039	Serpentine Soil	MMNLGFKGLLLLLAMVLFIVGALSEENQQDLLFWGLAVFAAAHIVESLPLGSLGPNRNRDRDA*
Ga0126309_109675013	3300010039	Serpentine Soil	MTNFGLRGLLLLLAVVLFVVGALMDNGDTKTDVLYWGLAVFAASFIVESIPLGNMGRRDRS*
Ga0126312_110451772	3300010041	Serpentine Soil	MMNLGLKALLLLLAIVLFIVGALSDDNKEDLLFWALAVFAASFIVESLPLGNMMGTRTRDRV*
Ga0126312_114448151	3300010041	Serpentine Soil	NPCGMNFGLRGLLLLLAAVLFVVGALMDPGDTKVDLLYWGLAVFAASFVAGHIPFGRIPGDRRRH*
Ga0126306_109876093	3300010166	Serpentine Soil	MMNLGFKGLLLLLAMVLFIVGALSEENQQDLLFWGLAVFAAAHIVESLPLSGMGPPGAIAPIAPD*
Ga0137312_10004982	3300011400	Soil	MTNFGLKALLLVLAVVLFIVGALMDAGETKVDLLYWGLAVFAAAFVADSVPLGNISRDRDRDRT*
Ga0137365_111191601	3300012201	Vadose Zone Soil	MKFGLRGLLLLLAVVLFIVGALSDSSNREDLLFWGLAVFAASFVVDSIPLGNMMATRTRER*
Ga0137374_1000862310	3300012204	Vadose Zone Soil	MNLGAKALLLLLAIVLFIVGALSDDFKKDLLFWGLAIFAASFIVESLPLGGMMGKRTRDRV*
Ga0137374_100171852	3300012204	Vadose Zone Soil	MNFGLKALLLLLAIVLFIVGALSDENKPDLLFWGLAVFAAAFIVESIPLGTMMGPRTRDRT*
Ga0137374_100417711	3300012204	Vadose Zone Soil	MNLGPKALLLLLAIVLFIVGALSGDFKKDLLFWGLAIFAASFIVESLPLGGMMAKRRRV*
Ga0137374_105184042	3300012204	Vadose Zone Soil	MNLGLKALLLLLAIVLFIVGALSDDFKKDLLFWGLAIFAASFIVESLPLGGMMGKRTRV*
Ga0150985_1059203164	3300012212	Avena Fatua Rhizosphere	MKFGARGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNIGNRNRS
Ga0137367_100393415	3300012353	Vadose Zone Soil	MMNLGPKALLLLLAIVLFIVGALSGDFKKDLLFWGLAIFAASFIVESLPLGGMMAKRTRV
Ga0137369_106446402	3300012355	Vadose Zone Soil	MNLGAKALLLLLAIVLFIVGALSDEHRWDLLFWGLAIFAASFIVESLPLGGMMGKRTRDRV*
Ga0137371_109315762	3300012356	Vadose Zone Soil	MMKFGLRGLLLLLAVVLFIVGALSDSSNREDLLFWGLAVFAASFVVDSIPLGNMMAGRSR
Ga0137375_1001677010	3300012360	Vadose Zone Soil	MMNLGPKALLLLLAIVLFIVGALSGDFKKDLLFWGLAIFAASFIVESLPLGGMMAKRRRV
Ga0150984_1173378204	3300012469	Avena Fatua Rhizosphere	LLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNIGNRNRS*
Ga0136635_100041984	3300012530	Polar Desert Sand	MINFGLRGLLLLLAVVLFIVGALSDGENKVDLLYWGLAVFAAAFIVDSIPLGNMTSQKDRDRT*
Ga0157309_103681361	3300012895	Soil	RRTLRFQRENGAMKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGNRG*
Ga0157293_100079745	3300012898	Soil	ETVFRRTLRFQRENGAMKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGNRG*
Ga0157308_101546312	3300012910	Soil	MMKFGLKGLLVLLAAVLFIVGALSDNENKLDLLYWGLAVLAASFIVESIPLGNMT
Ga0157374_111206663	3300013296	Miscanthus Rhizosphere	GPMKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGRRNS*
Ga0173483_103318523	3300015077	Soil	MMKFGIKGLLLVLAVVLFIVGALSDPGDNKVDLLYWGLAVFAAALIVESIPLGNMTAKRKES*
Ga0173480_110933823	3300015200	Soil	MMKFGLKGLLVLLAAVLFIVGALSDNENKLDLLYWGLAVFAAALIVESIPLGNMTAKRKES*
Ga0132256_1002501651	3300015372	Arabidopsis Rhizosphere	NGPMKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGNRG*
Ga0132255_1044685462	3300015374	Arabidopsis Rhizosphere	MNFGLRGLLLLLAVVLFVVGALTDPGETKQDLLYWGLAVFAASFVAGRIPFGRMP
Ga0184605_100090522	3300018027	Groundwater Sediment	MNLGFRALLLLLAIVLFIVGALMDSSNGTRVDLLYWGLAVFAASFIVESLPLGNWNASRNRS
Ga0184605_101201892	3300018027	Groundwater Sediment	MNLGLKALLLLLAIVLFIVGALSDDFKKDLLFWGLAIFAASFIVESLPLGTMTGTRTRER
Ga0184605_102617572	3300018027	Groundwater Sediment	MMSFGFRGLLLLLAVVLFIVGALSDNNQQDLLFWGLAIFAASFIVDSLPLGNMMGSRKQDHT
Ga0184634_100885312	3300018031	Groundwater Sediment	MMNLGFKGLLLLLAMVLFIVGALTDDNRQDLLFWGLAVLASSFIVDSLPLGALGPKRDRT
Ga0184638_10613992	3300018052	Groundwater Sediment	MNLGFKGLLLLLAMVLFIVGALNDDHRQELLFVGLTLFAASFIVDSLPLGSMGPKRDRT
Ga0184623_100461843	3300018056	Groundwater Sediment	MMTFGLKGLLLLLAVILFIVGALSDDDANKLDLLYWGLAVFAAAFIVESLPLGNMMGQRKQDRASS
Ga0184619_100018832	3300018061	Groundwater Sediment	MNLGFRALLLLLAIVLFIVGALMDSSDDTRVDLLYWGLAVFAASFIVESLPLGNWNASRNRS
Ga0184619_100249391	3300018061	Groundwater Sediment	MNLGLKALLLLLAIVLFIVGALSDDFKKDLLFWGLAIFAASFIVESLPLGTMTGT
Ga0184611_12441212	3300018067	Groundwater Sediment	MMNLGFKGLLLLLAMVLFIVGALTEDNRQDLLFWGLAVLASSFIVDSLPLGALGPKRDRT
Ga0184618_100719462	3300018071	Groundwater Sediment	MSFGFRGLLLLLAVVLFIVGALSDNNQQDLLFWGLAIFAASFIVDSLPLGNMMGSRKQDH
Ga0184618_102723653	3300018071	Groundwater Sediment	MNLGLKALLLLLAIVLFIVGALSDDNQEDLLFWGLAVFAASFVVESLPLGNMMGTRSRDR
Ga0184618_102980582	3300018071	Groundwater Sediment	SRETRPMMKFGLRGLLLLLAVVLFIVGALSDEGNTRQDLLYWGLAVFAASFIVESIPLGNMMAGRTRER
Ga0184635_102983922	3300018072	Groundwater Sediment	MNLGFKGLLLLLAMVLFIVGALTEDNRQDLLFWGLAVLASSFIVDSLPLGALGPKRDRTD
Ga0184640_104506351	3300018074	Groundwater Sediment	MMSFGFRGLLLLLAVILFIVGALSDENQQDLLFWGLAIFAASFIVDSLPLGNMMGQKSKDRS
Ga0184632_101092022	3300018075	Groundwater Sediment	MMKFGLRGLLLLLAVVLFIVGALSDEGNTRQDLLYWGLAVFAASFIVESIPLGNMMAGRTRER
Ga0184632_103206402	3300018075	Groundwater Sediment	MMNLGLKALLLLLAIVLFIVGALSDDNKDDLLFWGLAVFAASFIVESLPLGNMMGTRSRDRV
Ga0184609_100028132	3300018076	Groundwater Sediment	MMNLGLKALLLLLAIVLFIVGALSDDNQEDLLFWGLAVFAASFIVESLPLGNMMGTRSRDRV
Ga0184609_101436043	3300018076	Groundwater Sediment	MMNFGLKGLLLLLAVVLFIVGALSDDDANKLDLLYWGLGVFAAAFVIESIPLGNMMAGRNRER
Ga0184625_101342522	3300018081	Groundwater Sediment	MNNFGLRGLLLLLAVVLFIVGALMDTGDDTKVDFLYWGLAVFAASFVVGRIPLGALTRTRDRT
Ga0190265_100334994	3300018422	Soil	MNLGFKGLLLLLAMVLFIVGALSEENRQDLLFWGLAVLASSFIVDSLPLGALGPKRDRTD
Ga0190268_114890482	3300018466	Soil	MMNLGFKGLLLLLAMVLFIVGALSEDKQQDLLFWGLAVFAAAHIVESLPLGSLGPNRTRDRDA
Ga0173479_107520552	3300019362	Soil	MMKFGIKGLLLVLAVVLFIVGALSDPGDNKVDLLYWGLAVFAAAFIVESIPLGNMTAKRKES
Ga0190267_115746932	3300019767	Soil	MNFGLRGLLLLLAVVLFVVGALTDPGETKQDLLYWGLAVFAASFVAARIPFGRMPGDRRR
Ga0193705_10252042	3300019869	Soil	MNLGIRALLLLLAIVLFIVGALMSPSDDTRVDLLYWALAVFAASFIVESLPLGNIGNRKR
Ga0193741_10347914	3300019884	Soil	MNLGFKGLLLLLAMVLFIVGALSDENQQDLLFWGLAVFAAAHIVDSLPLGNLGPRRDRDRDA
Ga0210378_100125767	3300021073	Groundwater Sediment	MMNLGLKALLLLLAIVLFIVGALSDDNKEDLLFWGLAVFAASFIVESLPLGNMMGTRSRDRV
Ga0210378_102971242	3300021073	Groundwater Sediment	FGFRGLLLLLAVVLFIVGALSDGENKQDLLYWGLAVFAASFVVESIPLGNMMGASKRDRV
Ga0210382_100104172	3300021080	Groundwater Sediment	MMSFGFRGLLLLLAVVLFIVGALSDNNQQDLLFWGLAIFAASFIVDSLPLGNMMGSRKQDHA
Ga0182009_105211532	3300021445	Soil	MKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGRR
Ga0222622_110076971	3300022756	Groundwater Sediment	MMNLGFKGLLLLLAMVLFIVGALSEEHRQDLLFWGLAVFASSFIVDSLPLGALGP
Ga0247794_100236723	3300024055	Soil	MKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGRRNT
Ga0207688_105374733	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	NGPMKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGRRNT
Ga0207647_107778543	3300025904	Corn Rhizosphere	FQGENGPMKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGRRNT
Ga0207643_106167253	3300025908	Miscanthus Rhizosphere	MTNFGFRGLLLLLAVVLFVVGALMDNGDTKTDVLYWGLAVFAASFIVESLPLGNMTGRDR
Ga0207659_108411623	3300025926	Miscanthus Rhizosphere	LRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGRRNT
Ga0207687_117137983	3300025927	Miscanthus Rhizosphere	GLLLLLAVVLFVVGALMDNGDTKTDVLYWGLAVFAASFIVESLPLGNMGRGDRS
Ga0207701_106712863	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MMKFGIKGLLLVLAVVLFIVGALSDPGDNKVDLLYWGLAVFAAALIVESIPLGNMTAGRKQQ
Ga0207690_112328391	3300025932	Corn Rhizosphere	MKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGNRG
Ga0207661_101007621	3300025944	Corn Rhizosphere	MKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGRRNS
Ga0207712_111422963	3300025961	Switchgrass Rhizosphere	RENGPMKFGLRGLLLLLAVVLFIVGALMDNGDTKTDILYWGLAVFAASFIVESLPLGNVGRRNT
Ga0209056_102103653	3300026538	Soil	MNVGAKGLVLLLAVVLFIVGALMDSSNDNRVDLLYWGLAVLSASFILESLPLGSMMRRRT
Ga0209161_105065921	3300026548	Soil	MNVGFRGLLLLLAIVLFIVGALTDSHRQDILFWGLAVFAASFLVDSIPLGSMRTRPRA
Ga0209486_105253252	3300027886	Agricultural Soil	MMNIGLKGLLLLLAVVLFIVGALSDPGDTKTDLLYWGLAVFAAALIVESLPLTGGWGGRRDRT
Ga0268265_118537342	3300028380	Switchgrass Rhizosphere	MKFGLRGLLLLLAVVLFIVGALMDNGDTKTDVLYWGLAVFAASFIVESLPLGNMGRRDRS
Ga0247818_102416673	3300028589	Soil	MNFGLRGLLLLLAVVLFVVGALTDPGETKQDLLYWGLAVFAASFVAARIPFGRMPGERRR
Ga0247819_107286693	3300028608	Soil	RGLLLLLAVVLFVVGALTDPGETKQDLLYWGLAVFAASFVAARIPFGRMPGERRR
Ga0307293_101432162	3300028711	Soil	MNLGLKALLLLLAIVLFIVGALSDDFKKDLLFWGLAIFAASFIVESLPLGNMMGNRTRER
Ga0307303_100846022	3300028713	Soil	MMNFGLKGLLLLLAVVLFIVGALSDEGNTRQDLLYWGLAVFAAAFIIESIPLGNMMADRNRER
Ga0307298_101923873	3300028717	Soil	LLAIVLFIVGALMDSSDDTRVDLLYWGLAVFAASFIVESLPLGNWNASRNRS
Ga0307301_101215713	3300028719	Soil	LRAPKRGAMMNLGLKALLMLLAIVLFIVGALSDDNKEDLLFWGLAIFAASFIVESLPLGNMMGTRSRDRV
Ga0307301_102212112	3300028719	Soil	MNLGFKGLLLLLAMVLFIVGALSEENQQDLLFWGLAVFAAAHIVESLPLSSMGPRRDRTDRT
Ga0307301_102944443	3300028719	Soil	MNFGLRGLLLLLAVVLFVVGALMDNGDTKTDVLYWGLAVFAASFIVESIPLGNMTRRDNS
Ga0307317_100799524	3300028720	Soil	RRESRTMNLGIRALLLLLAIVLFIVGALMSPSDDTRVDLLYWALAVFAASFIVESLPLGNIGNRKRD
Ga0307317_102199553	3300028720	Soil	MNLGLKALLLLLAIVLFIVGALSDDFKKDLLFWGLAIFAASFIVESLPLGNMM
Ga0307319_100464051	3300028722	Soil	MMNLGLKALLMLLAIVLFIVGALSDDNKEDLLFWGLAIFAASFIVESLPLGNMMGTRSRDRV
Ga0307319_101550752	3300028722	Soil	MNFGFRGLLLLLAVVLFVVGALMDNGDTKTDVLYWGLAVFAASFIVESLPLGNMTRRDNS
Ga0307288_100597632	3300028778	Soil	MTNFGLRGLLLLLAVVLFVVGALMDNGDTKTDVLYWGLAVFAASFIVESLPLGDMGRRDR
Ga0307292_103090582	3300028811	Soil	MMKFGLRGLLLLLAAVLFIVGALSDEGNTRADLLYWGLAVFAASFIVESIPLGNMTAGRTRER
Ga0307302_101302832	3300028814	Soil	MMNLGFKGLLLLLAMVLFIVGALSEEHQQDLLFWGLAVLASSFIVDSLPLGALGPKRDRT
Ga0307302_103172571	3300028814	Soil	SDMMNLGFKGLLLLLAMVLFIVGALSEENQQDLLFWGLAVFAAAHIVESLPLSSMGPRRDRTDRT
Ga0307296_101572141	3300028819	Soil	MNLGLKALLLLLAIVLFIVGALSDDFKKDLLFWGLAIFAASFIVESLPLGNMMGN
Ga0307312_102009894	3300028828	Soil	MMNLGLKALLLLLAIVLFIVGALSDDFKKDLLFWGLAIFAASFIVESLPLGNMMGNRTRE
Ga0307286_102291382	3300028876	Soil	MMKFGLKGLLLVLAVVLFIVGALSDDDANKLDLLYWGLAVFAAAFIVESIPLGNMMADRNRER
Ga0307286_103351582	3300028876	Soil	MNFGLRGLLLLLAVVLFVVGALMDNGDTKTDVLYWGLAVFAASFIVESIPL
Ga0307278_1000025931	3300028878	Soil	MMNLGLKALLVFLAIVLFIVGALSDDNKEDLLFWGLAVFAASFIVESLPLGNMMGTRSRDRV
Ga0307278_100417404	3300028878	Soil	MMNLGLKALLLLLAIVLFIVGALSDDFKKDLLFWGLAIFAASFIVESLPLGGMMGKRTRV
Ga0307300_100281674	3300028880	Soil	MNIGFRGLLLLLAVVLFVVGALMDNGDTKTDVLYWGLAVFAASFIVESIPLGNMTRRDNS
Ga0307308_100184646	3300028884	Soil	MMKFGLKGLLLLLAVVLFIVGALSDSSNREDLLFWGLAVFAASFVVDSIPLGNMMAGRTRER
Ga0307405_101457932	3300031731	Rhizosphere	MNNFGLRGLLLLLAVVLFIVGALMDTGDDTKVDLLYWGLAVFAASFVVGRIPLGTISRTRDRS
Ga0307416_1016831212	3300032002	Rhizosphere	MMTFGLKGLLLLLAVILFIVGALSDDDGNKLDLLYWGLAVFAAAFIVESLPLGNMMGSRRQDRV
Ga0364945_0070760_46_231	3300034115	Sediment	MMNLGFKGLLLLLAMVLFIVGALSEENRQDLLFWGLAVLASSFIVDSLPLGALGPKRDRT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F056465

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences