Metagenome Family F056393

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056393
Family Type	Metagenome
Number of Sequences	137
Average Sequence Length	73 residues
Representative Sequence	ERVIELAQERLLANPYHVQSLAALAWAYEKNGNAALHRQACRQLVLRAEEVGLAPVAPELVAARRVLEVAA
Number of Associated Samples	113
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.85 %
% of genes near scaffold ends (potentially truncated)	89.05 %
% of genes from short scaffolds (< 2000 bps)	84.67 %
Associated GOLD sequencing projects	109
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.79

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.372 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (11.679 % of family members)
Environment Ontology (ENVO)	Unclassified (29.927 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.336 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.57% β-sheet: 0.00% Coil/Unstructured: 43.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.79
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.79
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SCOP family	SCOP domain	Representative PDB	TM-score
a.118.8.9: TPR-like repeats from PCI (proteasome / COP9 signalosome / eIF3) domains	d3txna1	3txn	0.79836
a.118.8.1: Tetratricopeptide repeat (TPR)	d3eska1	3esk	0.78217
a.118.8.0: automated matches	d4kbqa_	4kbq	0.76686
a.118.7.1: 14-3-3 protein	d3mhra1	3mhr	0.76041
a.118.8.1: Tetratricopeptide repeat (TPR)	d1wm5a2	1wm5	0.75925

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF08240	ADH_N	16.79
PF00881	Nitroreductase	10.22
PF00486	Trans_reg_C	5.11
PF01177	Asp_Glu_race	2.92
PF00106	adh_short	2.19
PF00107	ADH_zinc_N	2.19
PF03992	ABM	2.19
PF04909	Amidohydro_2	2.19
PF12867	DinB_2	1.46
PF03972	MmgE_PrpD	1.46
PF13602	ADH_zinc_N_2	1.46
PF00496	SBP_bac_5	1.46
PF13378	MR_MLE_C	0.73
PF07355	GRDB	0.73
PF01266	DAO	0.73
PF12974	Phosphonate-bd	0.73
PF12697	Abhydrolase_6	0.73
PF02746	MR_MLE_N	0.73
PF08241	Methyltransf_11	0.73
PF02518	HATPase_c	0.73
PF13450	NAD_binding_8	0.73
PF00296	Bac_luciferase	0.73
PF13795	HupE_UreJ_2	0.73
PF01431	Peptidase_M13	0.73
PF01435	Peptidase_M48	0.73
PF10002	DUF2243	0.73
PF05977	MFS_3	0.73
PF05138	PaaA_PaaC	0.73
PF04075	F420H2_quin_red	0.73
PF04055	Radical_SAM	0.73
PF08028	Acyl-CoA_dh_2	0.73
PF02567	PhzC-PhzF	0.73
PF13561	adh_short_C2	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	1.46
COG4948	L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	Cell wall/membrane/envelope biogenesis [M]	1.46
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	0.73
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.73
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.73
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.73
COG3396	1,2-phenylacetyl-CoA epoxidase, catalytic subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.73
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.37 %
Unclassified	root	N/A	22.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.37 %
Unclassified	root	N/A	22.63 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.37 %
Unclassified	root	N/A	22.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.63 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	16.06 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	7.30 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	2.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.63 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	16.06 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7.30 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.92 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	2.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.63 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	16.06 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	5.84 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	2.92 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.46 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	1.46 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.63 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	12.41 %
Nitriliruptorales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales	5.84 %
Candidatus Entotheonella factor	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella factor	2.92 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	1.46 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.46 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.63 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	12.41 %
unclassified Nitriliruptorales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales	5.84 %
Candidatus Entotheonella factor	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella factor	2.92 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	1.46 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.46 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.63 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	12.41 %
Nitriliruptorales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	5.84 %
Candidatus Entotheonella factor	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella factor	2.92 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	1.46 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.46 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_121060694	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	887	Open in IMG/M
3300003996\|Ga0055467_10003226	All Organisms → cellular organisms → Bacteria	2670	Open in IMG/M
3300004052\|Ga0055490_10155840	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	673	Open in IMG/M
3300004153\|Ga0063455_100720447	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	675	Open in IMG/M
3300004267\|Ga0066396_10056177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	644	Open in IMG/M
3300004281\|Ga0066397_10097276	Not Available	612	Open in IMG/M
3300004633\|Ga0066395_10009862	All Organisms → cellular organisms → Bacteria	3502	Open in IMG/M
3300005171\|Ga0066677_10513063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	688	Open in IMG/M
3300005178\|Ga0066688_10876870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	555	Open in IMG/M
3300005179\|Ga0066684_10610859	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella factor	733	Open in IMG/M
3300005218\|Ga0068996_10121281	Not Available	614	Open in IMG/M
3300005332\|Ga0066388_102332616	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	969	Open in IMG/M
3300005345\|Ga0070692_10147209	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
3300005444\|Ga0070694_101580671	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300005446\|Ga0066686_10382823	Not Available	961	Open in IMG/M
3300005468\|Ga0070707_101671380	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300005529\|Ga0070741_11658716	All Organisms → cellular organisms → Bacteria → Proteobacteria	522	Open in IMG/M
3300005536\|Ga0070697_100712166	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	886	Open in IMG/M
3300005555\|Ga0066692_10360578	Not Available	922	Open in IMG/M
3300005569\|Ga0066705_10937085	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300005586\|Ga0066691_10845403	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300005713\|Ga0066905_100008489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4689	Open in IMG/M
3300005713\|Ga0066905_100091820	All Organisms → cellular organisms → Bacteria → Proteobacteria	2032	Open in IMG/M
3300005713\|Ga0066905_100744493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	845	Open in IMG/M
3300005713\|Ga0066905_101155969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	690	Open in IMG/M
3300005713\|Ga0066905_101339954	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300005713\|Ga0066905_101995998	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300005764\|Ga0066903_101923327	All Organisms → cellular organisms → Bacteria → Proteobacteria	1134	Open in IMG/M
3300005876\|Ga0075300_1000004	All Organisms → cellular organisms → Bacteria → Proteobacteria	7126	Open in IMG/M
3300005876\|Ga0075300_1017645	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	876	Open in IMG/M
3300006034\|Ga0066656_10429570	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella factor	858	Open in IMG/M
3300006844\|Ga0075428_100971115	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	900	Open in IMG/M
3300006844\|Ga0075428_102462937	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300006853\|Ga0075420_101386818	Not Available	603	Open in IMG/M
3300006880\|Ga0075429_100015507	All Organisms → cellular organisms → Bacteria → Proteobacteria	6602	Open in IMG/M
3300006894\|Ga0079215_11561885	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300006914\|Ga0075436_101004420	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	626	Open in IMG/M
3300006918\|Ga0079216_11217651	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300007076\|Ga0075435_100570099	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	981	Open in IMG/M
3300007076\|Ga0075435_101448592	Not Available	602	Open in IMG/M
3300009100\|Ga0075418_11576720	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	713	Open in IMG/M
3300009147\|Ga0114129_12080482	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella factor	685	Open in IMG/M
3300009792\|Ga0126374_10878154	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	693	Open in IMG/M
3300009799\|Ga0105075_1051812	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300010047\|Ga0126382_11288107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	660	Open in IMG/M
3300010358\|Ga0126370_10277316	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300010359\|Ga0126376_12799628	Not Available	537	Open in IMG/M
3300010359\|Ga0126376_13258035	Not Available	502	Open in IMG/M
3300010360\|Ga0126372_10001718	All Organisms → cellular organisms → Bacteria	9146	Open in IMG/M
3300010361\|Ga0126378_10861735	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300010361\|Ga0126378_13220096	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300010362\|Ga0126377_10179978	All Organisms → cellular organisms → Bacteria	2010	Open in IMG/M
3300010362\|Ga0126377_12306649	Not Available	614	Open in IMG/M
3300010366\|Ga0126379_10965597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	956	Open in IMG/M
3300010376\|Ga0126381_100076849	All Organisms → cellular organisms → Bacteria	4185	Open in IMG/M
3300010399\|Ga0134127_10950220	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300010399\|Ga0134127_11940189	Not Available	666	Open in IMG/M
3300012096\|Ga0137389_10070305	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2704	Open in IMG/M
3300012207\|Ga0137381_11272854	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	628	Open in IMG/M
3300012685\|Ga0137397_11192221	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300012922\|Ga0137394_10790166	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300012948\|Ga0126375_11431152	Not Available	587	Open in IMG/M
3300012948\|Ga0126375_11859299	Not Available	527	Open in IMG/M
3300013308\|Ga0157375_11688058	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	750	Open in IMG/M
3300014272\|Ga0075327_1046168	All Organisms → cellular organisms → Bacteria → Proteobacteria	1291	Open in IMG/M
3300016270\|Ga0182036_10322210	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300016357\|Ga0182032_10229425	All Organisms → cellular organisms → Bacteria → Proteobacteria	1431	Open in IMG/M
3300016371\|Ga0182034_10643115	All Organisms → cellular organisms → Bacteria → Proteobacteria	898	Open in IMG/M
3300017659\|Ga0134083_10113273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1077	Open in IMG/M
3300017961\|Ga0187778_11339469	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300018028\|Ga0184608_10168581	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300018059\|Ga0184615_10448150	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300018074\|Ga0184640_10130606	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300018431\|Ga0066655_10090723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1688	Open in IMG/M
3300021560\|Ga0126371_11087443	Not Available	939	Open in IMG/M
3300022534\|Ga0224452_1125160	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300025795\|Ga0210114_1026591	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300025922\|Ga0207646_11121409	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300025922\|Ga0207646_11265957	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	645	Open in IMG/M
3300025922\|Ga0207646_11529491	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300025972\|Ga0207668_10317433	Not Available	1292	Open in IMG/M
3300026118\|Ga0207675_101471884	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300026343\|Ga0209159_1160174	Not Available	852	Open in IMG/M
3300026542\|Ga0209805_1405554	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300026548\|Ga0209161_10446658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300027013\|Ga0209884_1040036	Not Available	508	Open in IMG/M
3300027068\|Ga0209898_1018114	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300027169\|Ga0209897_1070023	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300027384\|Ga0209854_1067221	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300027654\|Ga0209799_1057179	Not Available	874	Open in IMG/M
3300027654\|Ga0209799_1106310	Not Available	637	Open in IMG/M
3300027655\|Ga0209388_1215629	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300027874\|Ga0209465_10005112	All Organisms → cellular organisms → Bacteria	5715	Open in IMG/M
3300027874\|Ga0209465_10164971	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300027907\|Ga0207428_10930960	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300027909\|Ga0209382_11474069	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300027909\|Ga0209382_11785694	All Organisms → cellular organisms → Bacteria → Proteobacteria	599	Open in IMG/M
3300028796\|Ga0307287_10268987	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	645	Open in IMG/M
3300030619\|Ga0268386_10016087	All Organisms → cellular organisms → Bacteria → Proteobacteria	5841	Open in IMG/M
3300031184\|Ga0307499_10316214	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10118058	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	719	Open in IMG/M
3300031544\|Ga0318534_10007111	All Organisms → cellular organisms → Bacteria	5402	Open in IMG/M
3300031573\|Ga0310915_10859720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	637	Open in IMG/M
3300031716\|Ga0310813_11196519	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300031720\|Ga0307469_10210915	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1526	Open in IMG/M
3300031740\|Ga0307468_100057442	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2077	Open in IMG/M
3300031740\|Ga0307468_100989250	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300031740\|Ga0307468_101799306	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300031748\|Ga0318492_10272665	All Organisms → cellular organisms → Bacteria → Proteobacteria	877	Open in IMG/M
3300031778\|Ga0318498_10170197	Not Available	990	Open in IMG/M
3300031797\|Ga0318550_10478410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	602	Open in IMG/M
3300031797\|Ga0318550_10531113	Not Available	567	Open in IMG/M
3300031820\|Ga0307473_11103178	Not Available	585	Open in IMG/M
3300031820\|Ga0307473_11333710	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella factor	538	Open in IMG/M
3300031854\|Ga0310904_10664630	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300031859\|Ga0318527_10304907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	678	Open in IMG/M
3300031890\|Ga0306925_10702903	All Organisms → cellular organisms → Bacteria → Proteobacteria	1058	Open in IMG/M
3300031893\|Ga0318536_10305744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	807	Open in IMG/M
3300032000\|Ga0310903_10256913	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	843	Open in IMG/M
3300032055\|Ga0318575_10119216	All Organisms → cellular organisms → Bacteria → Proteobacteria	1294	Open in IMG/M
3300032063\|Ga0318504_10322512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	733	Open in IMG/M
3300032065\|Ga0318513_10088249	All Organisms → cellular organisms → Bacteria	1439	Open in IMG/M
3300032091\|Ga0318577_10302262	Not Available	765	Open in IMG/M
3300032174\|Ga0307470_11752748	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300032180\|Ga0307471_101432488	Not Available	850	Open in IMG/M
3300032180\|Ga0307471_104238261	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300032205\|Ga0307472_100118911	Not Available	1862	Open in IMG/M
3300033501\|Ga0326732_1080939	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300034177\|Ga0364932_0103527	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1081	Open in IMG/M
3300034818\|Ga0373950_0048556	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	829	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.13%
Host-Associated	Host-Associated	13.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.56%
Plants	Host-Associated → Plants	13.87%
Aquatic	Environmental → Aquatic	6.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.10%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.14%
Marine	Environmental → Aquatic → Marine	3.65%
Sediment	Environmental → Aquatic → Sediment	2.92%
Peat	Environmental → Terrestrial → Peat	0.73%
Floodplain	Environmental → Terrestrial → Floodplain	0.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.82%
Loam	Environmental → Terrestrial → Soil → Loam	18.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.95%
Sand	Environmental → Terrestrial → Soil → Sand	4.38%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.19%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.73%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.73%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.11%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	4.38%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.19%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.46%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.46%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.46%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.73%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.03%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.30%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.11%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.38%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.65%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	3.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.19%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.19%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.46%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.46%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.73%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.73%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.73%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.73%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.73%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.73%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.73%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.73%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300004052	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005876	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401	Environmental	Open in IMG/M
3300005880	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_201	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009799	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014272	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025795	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027013	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027068	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027169	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027384	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033501	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF12FN SIP fraction	Environmental	Open in IMG/M
3300034177	Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1210606942	3300000956	Soil	DVFMELNRRLGRVDDVVALAHRRLLANPYHLQSLDALVWAHGIRGDAASRRQACRQLMVRAEAAGVAVDAPELREARAVLETKV*
Ga0055471_102116612	3300003987	Natural And Restored Wetlands	VQSLAALAWAYERSGNAALQRQACRQLVQRAAQIGVSPDAPELLAARQTLQVAA*
Ga0055467_100032261	3300003996	Natural And Restored Wetlands	ELHRRLGHVEQVIQLAQQRLLANPYHVQSLAALAWAYERSGNAALQRQACRQLVQRAAQVGVSPDAPELLAARQTLQVAA*
Ga0055490_101558401	3300004052	Natural And Restored Wetlands	EQVIELAQQRLLANPYHVQSLAVLAWAYERRGQAALQRQACRQLVLRAAEVGLAPEAPELLAARHVLQEAA*
Ga0063455_1007204472	3300004153	Soil	LAHQRLLANPNHVQSLAALAWAYERKGDAALHRQACRQLVLRVDELGGTAEAPEVAAARKILEAA*
Ga0066396_100561772	3300004267	Tropical Forest Soil	FMELHRRLGRVDRVIELAQERLLANPHHAQSLAALAWAYERNGNTVLHRQACRQLVLRAEQAGLAPTASELVAARRVLEVV*
Ga0066397_100972761	3300004281	Tropical Forest Soil	RRLGHVDQVVELAQQRLLANPHHVQSLAALAWAYECLGNTALHRQACRQLVLRAEEAGLAPTAPELLAARRVLEVAA*
Ga0066395_100098626	3300004633	Tropical Forest Soil	DIFRDVFMELHRRLGRADVVVALAQERLLANPYHVPSLTAMAWAYGKTGDAARQRQACRQLVQRAEAVGAADDAEELVAARGVLQASV*
Ga0066677_105130632	3300005171	Soil	RLLANPHHAQSLAALAWAYAENGDAALHRQACRQLVLRAEEAGLAPMAPELVAARRVLEVAA*
Ga0066688_108768702	3300005178	Soil	ANPHHAQSLAALAWAYAENGDAALHRQACRQLVLRAEEAGLAPMAPELVAARRVLEVAA*
Ga0066684_106108591	3300005179	Soil	IELAQERLLANSHHVQSLAALAWAYERSGNAVLQRQACRQLVRRAEEAGLCAEAPELVAARRVLELAA*
Ga0068996_101212812	3300005218	Natural And Restored Wetlands	LGHVERVIQLAQQRLLANPHHVQSLAALAWAYERTGDAALQRQACRQLVLRAEEVDLAPDAPELVAARRTLQVAA*
Ga0066388_1023326161	3300005332	Tropical Forest Soil	EQVTALAHERLLANPYHVPSLAALVWAYERNGDTARHRQACRQLVVRAGEAGCAPDDPDVKASRTVLAVGA*
Ga0070692_101472091	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	FRDVFMEIHRRLGRVERVIELAQERLLANPYHVQSLAALAWAYEKNGNAALHRQACRQLVLRAEEVGLAPVAPELVAARRVLEVAA*
Ga0070668_1003619081	3300005347	Switchgrass Rhizosphere	YHVQSLAALAWAYEKNGNAALHRQACRQLVLRAEEVGLAPVAPELVAARRVLEVAA*
Ga0070694_1015806712	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	RDVFMEIHRRLGRVERVIELAQERLLANPYHVQSLAALAWAYEKNGNAALHRQACRQLVLRAEEVGLAPVAPELVAARRVLEVAA*
Ga0066686_103828232	3300005446	Soil	RDVFLEVHRRLGRVERVIELAQERLLANPHHVQSLAALAWAYERNGNAALQRQACRQLVLRAEEVGLAPVAPELVAARRVLEVAA*
Ga0070707_1016713802	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	DVIALAQERLLANPHHVPSLASMAWAYEKTGDAALQRQACRQLVLRSEEIGVADDAEEVVAARQFLQAPV*
Ga0070741_116587161	3300005529	Surface Soil	VVALAHQRLLANPYHVQSLAALVWAYERKGDAALQRQACRQLVQRAGEAGCAPDAPEVASARAVLETAA*
Ga0070697_1007121662	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	ANPYHVPSLAALVWAYEQNGEAALHRQACRQLVLRAQEAGCAPDAPEVVAARNALDVAPR
Ga0066692_103605781	3300005555	Soil	RVIELAQQRLLANPHHAQSLAALAWAYERNGNAALHRQACRQLVLRAEAAGLAPVAPELVAARRVLEVAA*
Ga0066705_109370852	3300005569	Soil	AHRRLLANPYHVPSLAALVWAYERKSDAALHRQACRQLVLRAQEAGCAPDAPEVVAARNALDEAPR*
Ga0066691_108454032	3300005586	Soil	HVERVIELAQQRLLANPHHAQSLAALAWAYAENGDAALHRQACRQLVLRAEEAGLAPMAPELVAARRVLEVAA*
Ga0066905_1000084896	3300005713	Tropical Forest Soil	LAQERLLANPYHVPSLAAMAWAYEKTGDAARQRQACRQLVQRAEAVGAADDAEELVAARAVLRAPV*
Ga0066905_1000918204	3300005713	Tropical Forest Soil	DIFRDVFMEIHRRLGRVERVIELAQERLLANPHHMQSLAALAWAYEKNGNAALHRQACRQLVRRAEEVGLAPVAPELVAARRVLEVAA*
Ga0066905_1007444931	3300005713	Tropical Forest Soil	IELAQQRLLANPHHAQSLAALAWAYARSGNAVLHRQACRQLVQRAEQAGLAPTAPELVAARRVLEVV*
Ga0066905_1011559692	3300005713	Tropical Forest Soil	VFMEVHRRLGHADEVIGLAQQRLLANPHHVPSLAALAWAYERKGEAALHRQACRQLVLRAEEVGASPELSELQTARHALSR*
Ga0066905_1013399542	3300005713	Tropical Forest Soil	DIFRDVFMEIHRRLGRVERVIELAQERLLANPHHMQSLAGLAWAYEKNGNAALHRQACRQLVLRAEEVGLAPVAPELVAARRVLEVAA*
Ga0066905_1019959982	3300005713	Tropical Forest Soil	IALAQARLLANPHHVASLAALAWAYERTGDAALHRQACRQIVLRAEEAGLAPDAPELASARKVLDTAA*
Ga0066903_1019233271	3300005764	Tropical Forest Soil	QKDIFRDVFIELHRRLGHVEQVIELAQQRLVANPYHVASLAALAWAYERSGRADLQRQACRQLVLRAGEVGLAEDAPELLAAREALQTVP*
Ga0075300_10000041	3300005876	Rice Paddy Soil	QQRLLANPYHVQSLAALGWAYQRRGDAALHRQACRQLVQRAEAAGLAPDAPELLGARQALQITP*
Ga0075300_10176452	3300005876	Rice Paddy Soil	LQRRLGRVEQVIELAQERLLANPHHVQSLAALAWAYERQGNAGLQRQACRQLVLRAEEAGLAPKAPELRAARQVLQVAA*
Ga0075298_10185691	3300005880	Rice Paddy Soil	QSLAALGWAYQRRGDAALHRQACRQLVQRAEAAGLAPDAPELLGARQALQITP*
Ga0066656_104295701	3300006034	Soil	VIELAQERLLANPHHVQSLAALAWAYERSGNAVLQRQACRQLVRRAEEVGLCAEAPELVAARRVLERAA*
Ga0075428_1009711151	3300006844	Populus Rhizosphere	LANPYHVQSLAALAWAYERGGDTVLQRQACRQLVRRAEEIGLAPDVPELLAARRTLQIAA
Ga0075428_1024629372	3300006844	Populus Rhizosphere	KDIFRDIFMEVHRRLGHADRVIALAQERLLANPYHAQSLAALVWAYGKNGNAVLQRQACRQLVARAEEVGLCAEAPELVAARRLLDTAA*
Ga0075420_1013868181	3300006853	Populus Rhizosphere	AQERLLANPYHVQSLAALAWAYEKNGNAALHRQACRQLVLRAEEVGLAPVAPELVAARRVLEVAA*
Ga0075425_1009093453	3300006854	Populus Rhizosphere	HVQSLAALAWAYERGGNAALHRQACRQLVLRAEEAGLAPTAPELMAARRVLEVAA*
Ga0075429_1000155079	3300006880	Populus Rhizosphere	DIFRDVFMEIHRRLGRVERVIELAQERLLANPYHVQSLAALAWAYEKNGNAALHRQACRQLVLRAEEVGLAPVAPELVAARRVLEVAA*
Ga0079215_115618851	3300006894	Agricultural Soil	VDQVIALAQERLIANPRHIPSLAALAWAYEKRGDAALHRHACQQLALRADEAGLAPDAAELRAAREVLQTSV*
Ga0075436_1005799002	3300006914	Populus Rhizosphere	HVQSLAALAWAYERSGNAVLRRQACRQLVRRAEEVGLCAEAPELVAARRVLELAA*
Ga0075436_1010044201	3300006914	Populus Rhizosphere	ELHRRLGHVERVIELAHQRLLANPNHVQSLAALAWAYERNGDAALHRQACRQLVLRAGEAGLAPAAPELTAARRVLETPA*
Ga0079216_112176512	3300006918	Agricultural Soil	MVCDSAEPVMVLAEQRLLANPSHMASLAALAWAYERKGETALHRQACRQLVHRAEDIGLAPDAPELAAARQVLDAHP*
Ga0075435_1005700992	3300007076	Populus Rhizosphere	LELHRRLGREDDVIALAHQRLLANPYHVPSLAALVWAYERKGEAALHRQACRQLVLRAQEAGGAADAPEVVAAREALDEAPR*
Ga0075435_1014485921	3300007076	Populus Rhizosphere	RDVFMEAHRRLGHTDAVIELAQERLLANPHHIQSLTALAWAYESCGNLVLQRQACRQLVLRAEEVGLCAEAPELAAARRVLEVAA*
Ga0075418_115767202	3300009100	Populus Rhizosphere	NPYHGQSLAALAWAYERTGEAALQRQACRQLVLRAQESGLAPDVPELRAAREVLQTAA*
Ga0114129_120804823	3300009147	Populus Rhizosphere	LLANPHHVQSLAALAWAYERSGNAVLERQACRQLVRRAEEAGLCAEAPELVAARRVLELAA*
Ga0126374_108781541	3300009792	Tropical Forest Soil	ELQRRLDRVDEVIALAQERLLANPYHIQSLASLAWAYARSGDAALQRDACRQLVQRAEEIGLAPGAPELVSARQALHVAA*
Ga0105075_10518121	3300009799	Groundwater Sand	MTATDIKGLGVSELEQERLLANPRRMQSLATLARAYEHGGNAALQRQACRQLVLRAAEGGLATVAPELVAARRMLEVAA*
Ga0126382_112881071	3300010047	Tropical Forest Soil	HRRLGHADEVIGLAQQRLLANPHHVPSLAALAWAYERKGEAALHRQACRQLVLRAEEVGASPELSELQTARHALSR*
Ga0126370_102773161	3300010358	Tropical Forest Soil	AVVALAQERLLANPYHVPSLAAMAWAYEKTGDAARQRQACRQLVQRAEAVGAADDAEELVAARGVLRAAV*
Ga0126376_127996281	3300010359	Tropical Forest Soil	LTLAQERLLANPYHVPSLVAMAWAYEKTGDAARRRQACRQLVERAETVGAADDAEELVAARGVLRVPV*
Ga0126376_132580351	3300010359	Tropical Forest Soil	LHRRLGRADVVVALAQERLLANPYHVPSLAAMAWAYEKTGDAARQRQACRQLVQRAEAVGAADDAEELVAARGVLRAFV*
Ga0126372_100017181	3300010360	Tropical Forest Soil	LLANPHHAQSLAALAWAYERSGNADLHRQACRQLVLRAGEAGLAPTAPELVAARRVLEVV
Ga0126378_108617352	3300010361	Tropical Forest Soil	RLGRVDQVVELAQQRLLANPHHVQSLGALAWAYEYSGNAALHRQACRQLVLRAEEAGLAPTAPELLAARRVLDVGA*
Ga0126378_132200961	3300010361	Tropical Forest Soil	QQRLLANPHHAQSLAALAWAYERSGNAVLHRQACRQLVLRAEQAGLAPTASELVAARRVLEVV*
Ga0126377_101799781	3300010362	Tropical Forest Soil	DIFMDLQRRLDRVDRVIELAQERLLANPHHAQSLAALAWAYERSGNTVLYRQACRQLVLRAEQAGLAPTASELVAARRVLEVV*
Ga0126377_123066492	3300010362	Tropical Forest Soil	FMEIHRRLGRVERVIELAQERLLANPHHVQSLAALAWAYERNGNAALHRQACRQLVRRAEEVGLAPAAPELVAARRVLEVAA*
Ga0126379_109655971	3300010366	Tropical Forest Soil	RDIFMDLHRRLDRVDRVIELAQERLLANPHHAQSLAALAWAYERSGNTVLHRQACRQLVLRAEQAGLAPTASELVAARRVLEVV*
Ga0126381_1000768497	3300010376	Tropical Forest Soil	RADVVVALAQERLLANPYHVPSLAAMAWAYEETGDAARQRQACRQLVQRAEAVGAADDAEELVAARGVLQASV*
Ga0134127_109502202	3300010399	Terrestrial Soil	RRRGHVEKVIELAQQRLLANPYHVQSLAALAWAYERNGNAALQRQACRQLVLRGEEVDLAPDAPELVAARRTLQVAA*
Ga0134127_119401892	3300010399	Terrestrial Soil	RLLANPYHVQSLAALAWAYERSGNAALQRQACRQLVLRAEEVDLAPDAPELLAARQTLQVAA*
Ga0137389_100703056	3300012096	Vadose Zone Soil	QERLLANPHHVQSLAALAWAYERSGNATLQRQACRQLVLRAEEAGLSPRAPELVAARRVLEVAA*
Ga0137381_112728541	3300012207	Vadose Zone Soil	KDIFRDAFMELHRRLGHVERVIELAHQRLLANPNHVQSLAALAWAYERNGNAALHRQACRQLVLRAGEAGLAPGAPELTAARRVLETTA*
Ga0137397_111922211	3300012685	Vadose Zone Soil	IELAQERLLANPHHIQSLAALAWAYERGGNVTLQRQACRQLVLRAEAAGLAPTASELVAARRVLDVTT*
Ga0137394_107901662	3300012922	Vadose Zone Soil	GEVIALAQERLLANPNHVASLAALAWAYEKTGDEALRRQACRQLVQRSEEIGVAEDAKELVAARQVLAAAV*
Ga0126375_114311522	3300012948	Tropical Forest Soil	VIELAQQRLLANPCHVQSLAALAWAYERQQNPLLQRQACRQLVQRAEEAGLAPDSVELLAARQVLQAVA*
Ga0126375_118592992	3300012948	Tropical Forest Soil	HRRLGRVDAVVALAQERLLANPYHVPSLAAMAWAYEKTGDAARQRQACRQLVQRAEAVGAADDAEELVAARGVLRAPI*
Ga0157375_116880582	3300013308	Miscanthus Rhizosphere	ELHRRLGHVERVIELAHQRLLANPNHVQSLDALAWAYERNGNAALHRQACRQLVLRAGEAGLAPGAPELTAARRVLETTA*
Ga0075327_10461683	3300014272	Natural And Restored Wetlands	NPHHVQSLAALAWAYERRGDAALQRQACRQLVLRAEEVDLAPDAPELLAARQTLQVAA*
Ga0137409_100868623	3300015245	Vadose Zone Soil	MFVSLVTSLAALAWAYERNGDAVLHRQACRQLVLRAEESGLAPGAPELVAARRVLEVA*
Ga0182036_103222102	3300016270	Soil	ELHRRLGRVDRVIELAQERLLANPHHAQSLAALAWAYERNGNTVLHRQACRQLVLRAEQAGLAPTASELVAARRVLEVV
Ga0182032_102294251	3300016357	Soil	QQRLLANPNHVQSLAALAWAYERNGNTALHRQACRQLVLRAADAGLSPQAPELTAARRVLDTTV
Ga0182034_106431151	3300016371	Soil	DIFRDAFLEIHRRLGHVERVIELAQQRLLANPNHVQSLAALAWAYERNGNTALHRQACRQLVLRAADAGLSPQAPELTAARRVLDTTV
Ga0134083_101132731	3300017659	Grasslands Soil	NPHHVQSLAALAWAYERSGNAVLRRQACRQLVRRAEEVGLCAEAPELVAARRVLELAA
Ga0187778_113394691	3300017961	Tropical Peatland	ALAQDRLLANPYHVPSLAALVWAYAHEGNAALHRHACRQLVQRAEQAGLASDAPEVLAARQALQSAD
Ga0184608_101685811	3300018028	Groundwater Sediment	NPHHVQLLAALAWAYGRSGNAVLQRQACRQLVLRAEEVGTTRVGASAVAARVTRSSGAR
Ga0184615_104481502	3300018059	Groundwater Sediment	FRDVFMELHRRLGHVERVIELAQQRLLANPYHVQSLAALAWAYERSGNAALQRHACRQLVLRAEEVDLAPDAPELLAARHTLQVAA
Ga0184640_101306062	3300018074	Groundwater Sediment	MELHRRLGHVEQVIELAQQRLLANPYHVQSLAALAWAYERNGNAALQRHACRQLVLRAAEVGLAPEACELLAARQVLRVTA
Ga0066655_100907231	3300018431	Grasslands Soil	VERVIELAQQRLLANPHHVQSLAALAWAYERGGNAPLHRQACRQLVLRGEEAGLSPLAPELVGARRVLETAV
Ga0126371_110874432	3300021560	Tropical Forest Soil	AVVALAQERLLANPYHVPSLAAMAWAYEKTGDAARQRQACRQLVQRAEAVGAADDAEELVAARAVLRAPV
Ga0224452_11251602	3300022534	Groundwater Sediment	MELHRRLDHIEQVIELAQERLLANPHHVQSLAALAWAYGRSGNAVLQRQACRQLVLRAEEVGTTRVGASAVAARVTRSSGAR
Ga0210114_10265911	3300025795	Natural And Restored Wetlands	VELHRRLGHVEQVIQLAQQRLLANPYHVQSLAALAWAYERSGNAALQRQACRQLVQRAAQIGVSPDAPELLAARQTLQVAA
Ga0207646_111214092	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	AHRRLLANPYHVPSLAALVWAYERNGDAALHRQACRQLVLRAQEAGCAPDMPEVVAARNALDEAPR
Ga0207646_112659572	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	RRLGRVDAVVALAQERLLANPYHVPSLAAMAWAYEKTGDAALQRQACRQLVQRAEAVGAADDAEELVAAREVLRAPV
Ga0207646_115294911	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	ELHRRLGHVEDVIALAQERLLANPHHVPSLASMAWAYEKTGDAALQRQACRQLVLRSEEIGVADDAEEVVAARQFLQAPV
Ga0207668_103174331	3300025972	Switchgrass Rhizosphere	LANPYHVQSLAALAWAYEKNGNAALHRQACRQLVLRAEEVGLAPVAPELVAARRVLEVAA
Ga0207675_1014718841	3300026118	Switchgrass Rhizosphere	KDIFRDAFMELHRRLGHVERVIELAHQRLLANPNHVQSLAALAWAYERNGNAALHRQACRQLVLRAGEAGLAPTAPELTAARRVLETTA
Ga0209159_11601741	3300026343	Soil	IAQERLLANPHHVQSLAALAWAYERNGNAALQRQACRQLVLRAEEVGLAPVAPELVAARRVLEVAA
Ga0209805_14055541	3300026542	Soil	QKDIFRDTFMELHRRLGHVERVIELAQQRLLANPHHAQSLAALAWAYAENGDAALHRQACRQLVLRAEEAGLAPMAPELVAARRVLEVAA
Ga0209161_104466582	3300026548	Soil	QEDIFRDTFMELHRRLGHVERVIELAQQRLLANPHHAQSLAALAWAYAENGDAALHRQACRQLVLRAEEAGLAPMAPELVAARRVLEVAA
Ga0209884_10400361	3300027013	Groundwater Sand	MTATDIKGLGVSELEQERLLANPRRMQSLATLARAYEHGGNAALQRQACRQLVLRAAEGGLATVAPELVAARRMLEVAA
Ga0209898_10181142	3300027068	Groundwater Sand	MTATDIKGLGVSELEQERLLANPRRMQSLATLARAYEHSGNAALQRQACRQLVLRAAEGGLATVAPELVAARRMLEVAA
Ga0209897_10700231	3300027169	Groundwater Sand	ELEQERLLANPRRMQSLATLARAYEHGGNAALQRQACRQLVLRAAEGGLATVAPELVAARRMLEVAA
Ga0209854_10672212	3300027384	Groundwater Sand	MTATDIKGLGVSELEQERLLANPRRMQSLATLARAYEHSGNAALQRQACRQLVLRTAEGGLATVAPELVAARRMLEVAA
Ga0209684_10670662	3300027527	Tropical Forest Soil	NPHHAQSLAALAWAYERSGNAVLHRQACRQLVLRAEQAGLAPTAPELVAARRVLEVV
Ga0209799_10571792	3300027654	Tropical Forest Soil	GRVDQVVELAQQRLLANPHHVQSLGALAWAYEYSGNAALHRQACRQLVLRAEEAGLAPTAPELAAARRVLDVGA
Ga0209799_11063101	3300027654	Tropical Forest Soil	GRVERVIELAQERLLANPHHVQSLAALAWAYEKNGNAALHRQACRQLVLRAEAVGLAPNAPELVAARRVLEVAA
Ga0209388_12156291	3300027655	Vadose Zone Soil	DIFMELHRRLDRVERVIELAQERLLANPHHIQSLAALAWAYERGGNVTLQRQACRQLVLRAEAAGLAPTASELVAARRVLDVTT
Ga0209465_100051121	3300027874	Tropical Forest Soil	VFMELHRRLGRADVVVALAQERLLANPYHVPSLTAMAWAYGKTGDAARQRQACRQLVQRAEAVGAADDAEELVAARGVLQASV
Ga0209465_101649711	3300027874	Tropical Forest Soil	VFMELHRRLGRADVVVALAQERLLANPYHVPSLAAMAWAYEKTGDAARQRQACRQLVQRAEAVGAADDAEELVAARGVLRASV
Ga0207428_109309602	3300027907	Populus Rhizosphere	DVFMELHRRLGHTREVIELAQQRLLANPYHVQSLAALAWAYEKSGDAALQRQACRQLVRRAEEVDLASDAPELVAARRTLQVAA
Ga0209382_114740692	3300027909	Populus Rhizosphere	LANPYHGQSLAALAWAYERTGEAALQRQACRQLVLRAQESGLAPDVPELRAAREVLQTAA
Ga0209382_117856941	3300027909	Populus Rhizosphere	VALAQERLLANPHHIPSLAALAWAYERTGDESLRRHACRQLVQRAEEVGLAADAPELSAARKALHAAA
Ga0307287_102689871	3300028796	Soil	LLANPYHVQSLAALAWAYERGGDLALQRQACRQLVRRAEEIDLAPDAPELLAARRTLQVA
Ga0268386_100160871	3300030619	Soil	QKDIFRDVFLELHRRLGHVEQVIELAQQRLLANPHHVQSLAALAWAYERRGDAALQRQACRQLVLRAEEVDLAPDAPELLAARHTLQVAA
Ga0307499_103162141	3300031184	Soil	DAFMELHRRLGHVERVIELAHQRLLANPNHVQSLAALGWAYERNGNAALHRQACRQLVLRAGEAGLAPGAPELTAARRVLETTA
(restricted) Ga0255310_101180582	3300031197	Sandy Soil	VIELAQERLLANPHHVQSLAALAWAYERSGNAALQRQACRQLVLRAEEAGLSPRAPELVAARRVLEMAA
Ga0318534_100071111	3300031544	Soil	MELHRRLGRADVVVALAQERLLANPYHVPSLAAMAWAYEETGDAARQRQACRQLVQRAEAVGAADDAEELVAARGVLQASV
Ga0310915_108597201	3300031573	Soil	QQRLLANPNHVQSLAALAWAYEENGNAVLHRQACRQLVLRAADAGLSPQAPELTAARRVLDTTV
Ga0310813_111965191	3300031716	Soil	YHLQSLDALTWAYGVRGDVALRRQACRQLVVRAEAAGVADDVPELREARAVLALYS
Ga0307469_102109152	3300031720	Hardwood Forest Soil	IFRDVFMELHRRLGHVDAVVALAQERLLANPSHVPSLAAMAWAYEKAGDAALQRQACRQLVQRAEAVGAADDAEELVAARRVLRAPV
Ga0307468_1000574421	3300031740	Hardwood Forest Soil	DIFRDAFMELHRRLGHVERVIDLAHQRLLANPNHVQSLAALAWAYERNGNAALHRQACRQLVLRAGEAGLAPGAPELTAARRVLETTA
Ga0307468_1009892502	3300031740	Hardwood Forest Soil	AHERLLANPHHIQSLAALAWAYERAGDAALQRQACRQLVLRAETAGLSPNATELLAARRVLAVTTS
Ga0307468_1017993062	3300031740	Hardwood Forest Soil	EVCRRLGHVEQVIALAQERLLANPCHVPSLAALAWAYEKNGNAALQRHASRQLVLRAEEAGVADDAEELVAARQALHAPA
Ga0318492_102726651	3300031748	Soil	RVIELAQQRLLANPNHVQSLAALAWAYERNGNTALHRQACRQLVLRAADAGLSPQAPELTAARRVLDTTV
Ga0318498_101701971	3300031778	Soil	LGRADVVVALAQERLLANPYHVPSLAAMAWAYEETGDAARQRQACRQLVQRAEAVGAADDAEELVAARGVLQASV
Ga0318550_104784102	3300031797	Soil	ANPHHAQSLAALAWAYERNGNTVLHRQACRQLVLRAEQAGLAPTASELVAARRVLEVV
Ga0318550_105311131	3300031797	Soil	VVALAQERLLANPYHVPSLAAMAWAYEETGDAARQRQACRQLVQRAEAVGAADDAEELVAARGVLQASV
Ga0307473_111031782	3300031820	Hardwood Forest Soil	ERVIELAQERLLANPHHVQSLAALAWAYERNGNAALHRQACRQLVRRAEEVGLAPVAPELVAARRVLEVAA
Ga0307473_113337102	3300031820	Hardwood Forest Soil	ELAQERLLANPHHVQSLAAHAWAYERSGNAVLQRQACRQLVRRAEEVGLCAEAPELVAARRVLERAA
Ga0310904_106646301	3300031854	Soil	RVIELAQQRLLANPHHAQSLAALAWAYEKNGNAPLQRQACRQLVERAGEAGLCAEAPELAAARRVLQTAP
Ga0318527_103049072	3300031859	Soil	DIFRDAFLEIHRRLGHVERVIELAQQRLLANPNHVQSLAALAWAYEENGNAVLHRQACRQLVLRAGEAGLAPQAPELTAARRVLDTTV
Ga0306925_107029031	3300031890	Soil	ANPNHVQSLAALAWAYERNGNTALHRQACRQLVLRAADAGLSSQAPELTAARRVLDTTV
Ga0318536_103057441	3300031893	Soil	GRVDRVIELAQERLLANPHHAQSLAALAWAYERNGNTVLHRQACRQLVLRAEQAGLAPTASELVAARRVLEVV
Ga0310903_102569133	3300032000	Soil	HQRRLANPNHVQSLAALAWAYERNGNAALHRQACRQLVLRSGEAGLAPTAPELTAARRVLETTA
Ga0318575_101192161	3300032055	Soil	RVIELAQQRLLANPNHVQSLAALAWAYERNGNTALHRQACRQLVLRAADAGLSSQAPELTAARRVLDTTV
Ga0318504_103225122	3300032063	Soil	AQERLLANPHHAQSLAALAWAYERNGNTVLHRQACRQLVLRAEQAGLAPTASELVAARRVLEVV
Ga0318513_100882491	3300032065	Soil	LGRVDRVIELAQERLLANPHHAQSLAALAWAYERNGNTVLHRQACRQLVLRAEQAGLAPTASELVAARRVLEVV
Ga0318577_103022621	3300032091	Soil	ELHRRLGRADVVVALAQERLLANPYHVPSLAAMAWAYEETGDAARQRQACRQLVQRAEAVGAADDAEELVAARGVLQASV
Ga0307470_117527481	3300032174	Hardwood Forest Soil	QKDIFRDVFMELHRRLGRVDAVVALAQERLLANPYHVPSLAAMAWAYEKTGDAARQRQACRQLLQRAEAVGAADDAEELVAAREVLRAPV
Ga0307471_1014324881	3300032180	Hardwood Forest Soil	FMELHRRLGHMDQVVELAQQRLLANPHHVQSLAALAWAYECSGDAALHRQACRQLLLRAEEAGLAPTAPELMAARRVLEVAA
Ga0307471_1042382611	3300032180	Hardwood Forest Soil	FMELHRRLGHVDEVVTLAQERLLANPYHVPSLAALAWAYDKTGDAARQRQACRQLVLRSEEIGAAGDAAEVVAARAVLRAPL
Ga0307472_1001189114	3300032205	Hardwood Forest Soil	ERVIELAQERLLANPYHVQSLAALAWAYEKNGNAALHRQACRQLVLRAEEVGLAPVAPELVAARRVLEVAA
Ga0326732_10809392	3300033501	Peat Soil	DIFRDVFMELHRRLGHVEHVIELAQQRLLANPYHVQSLAALAWAYERTGNTTLQRLACRQLVRRAEEIDLAPDAPELLAARQALQVAA
Ga0364932_0103527_814_1080	3300034177	Sediment	IFRDVFMEMHRRLGDVEQVIELAQERLLANPHHVQSLAALAWAYARKGDAALQRHACRQLVLRGEEVGLAPDAPELLAARQTLRGKDR
Ga0373950_0048556_3_188	3300034818	Rhizosphere Soil	LLANPNHVQSLAALAWAYERNGNAALHRQACRQLVLRSGEAGLAPTAPELTAARRVLETT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters