Metagenome / Metatranscriptome Family F056164

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056164
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	45 residues
Representative Sequence	MPNFTALDMSLPEVATLVAAMVQARDAVSRRSWSHPQEPTGEEW
Number of Associated Samples	94
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.08 %
% of genes near scaffold ends (potentially truncated)	69.57 %
% of genes from short scaffolds (< 2000 bps)	73.19 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (55.072 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.058 % of family members)
Environment Ontology (ENVO)	Unclassified (54.348 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.420 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.17% β-sheet: 0.00% Coil/Unstructured: 70.83%
Feature Viewer

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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF13676	TIR_2	8.70
PF03401	TctC	5.80
PF04471	Mrr_cat	2.17
PF01068	DNA_ligase_A_M	2.17
PF01699	Na_Ca_ex	1.45
PF04392	ABC_sub_bind	1.45
PF13361	UvrD_C	0.72
PF00753	Lactamase_B	0.72
PF02515	CoA_transf_3	0.72
PF09509	Hypoth_Ymh	0.72
PF13365	Trypsin_2	0.72
PF07748	Glyco_hydro_38C	0.72
PF02796	HTH_7	0.72
PF03928	HbpS-like	0.72
PF01972	SDH_sah	0.72
PF13417	GST_N_3	0.72
PF00589	Phage_integrase	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	5.80
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	2.17
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.17
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	1.45
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	1.45
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.45
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.45
COG0383	Alpha-mannosidase	Carbohydrate transport and metabolism [G]	0.72
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.07 %
All Organisms	root	All Organisms	44.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.07 %
cellular organisms	root	All Organisms → cellular organisms	44.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.07 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.07 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.07 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.36 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.07 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.70 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.80 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.62 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.07 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.80 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.35 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	3.62 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.72 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.72 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.72 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.07 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.80 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.35 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	3.62 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.72 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.72 %
Thiohalocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiohalocapsa	0.72 %
Beijerinckia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.07 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.80 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	3.62 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.45 %
unclassified Beijerinckia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia	0.72 %
Microvirga mediterraneensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga mediterraneensis	0.72 %
Thiohalocapsa halophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiohalocapsa → Thiohalocapsa halophila	0.72 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.07 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.80 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	3.62 %
Bradyrhizobium sp. Ai1a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1.45 %
Beijerinckia sp. L45	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. L45	0.72 %
Rhizobium leguminosarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	0.72 %
Microvirga mediterraneensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga mediterraneensis	0.72 %
Thiohalocapsa halophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiohalocapsa → Thiohalocapsa halophila	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101226279	Not Available	573	Open in IMG/M
3300000550\|F24TB_11342976	Not Available	617	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1102576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10056506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	867	Open in IMG/M
3300000955\|JGI1027J12803_104318945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga mediterraneensis	949	Open in IMG/M
3300001431\|F14TB_103682584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	720	Open in IMG/M
3300005167\|Ga0066672_10529435	Not Available	764	Open in IMG/M
3300005332\|Ga0066388_101089933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1351	Open in IMG/M
3300005332\|Ga0066388_101142052	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
3300005332\|Ga0066388_104554506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	706	Open in IMG/M
3300005332\|Ga0066388_106995273	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300005363\|Ga0008090_15675556	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300005713\|Ga0066905_101183874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	682	Open in IMG/M
3300005764\|Ga0066903_101334857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1342	Open in IMG/M
3300005764\|Ga0066903_102041572	Not Available	1102	Open in IMG/M
3300005764\|Ga0066903_102488262	All Organisms → cellular organisms → Bacteria → Proteobacteria	1002	Open in IMG/M
3300005764\|Ga0066903_103958522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiohalocapsa → Thiohalocapsa halophila	795	Open in IMG/M
3300005764\|Ga0066903_107301960	Not Available	571	Open in IMG/M
3300005764\|Ga0066903_108689999	Not Available	516	Open in IMG/M
3300006038\|Ga0075365_10760973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	684	Open in IMG/M
3300006847\|Ga0075431_101554106	Not Available	620	Open in IMG/M
3300006854\|Ga0075425_102758461	Not Available	541	Open in IMG/M
3300006904\|Ga0075424_102398626	Not Available	553	Open in IMG/M
3300009792\|Ga0126374_11272954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300010047\|Ga0126382_10984935	Not Available	737	Open in IMG/M
3300010048\|Ga0126373_11468395	Not Available	747	Open in IMG/M
3300010359\|Ga0126376_12208610	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300010360\|Ga0126372_13214204	Not Available	508	Open in IMG/M
3300010361\|Ga0126378_13235897	All Organisms → cellular organisms → Bacteria → Proteobacteria	518	Open in IMG/M
3300010366\|Ga0126379_10561978	Not Available	1222	Open in IMG/M
3300010366\|Ga0126379_10913002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	981	Open in IMG/M
3300010376\|Ga0126381_104785764	Not Available	521	Open in IMG/M
3300010398\|Ga0126383_11686021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	723	Open in IMG/M
3300010398\|Ga0126383_11873649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	688	Open in IMG/M
3300010863\|Ga0124850_1007592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3431	Open in IMG/M
3300012958\|Ga0164299_10646127	Not Available	731	Open in IMG/M
3300012971\|Ga0126369_12608675	Not Available	590	Open in IMG/M
3300015373\|Ga0132257_102934136	Not Available	621	Open in IMG/M
3300015373\|Ga0132257_103879003	Not Available	544	Open in IMG/M
3300016270\|Ga0182036_11924049	Not Available	502	Open in IMG/M
3300016319\|Ga0182033_10378337	Not Available	1191	Open in IMG/M
3300016319\|Ga0182033_10937208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	768	Open in IMG/M
3300016319\|Ga0182033_11796504	Not Available	556	Open in IMG/M
3300016341\|Ga0182035_10269168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1384	Open in IMG/M
3300016341\|Ga0182035_10591929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	958	Open in IMG/M
3300016357\|Ga0182032_10410715	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300016387\|Ga0182040_10287783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1251	Open in IMG/M
3300016387\|Ga0182040_11322648	Not Available	609	Open in IMG/M
3300016404\|Ga0182037_10222695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1477	Open in IMG/M
3300016422\|Ga0182039_10775326	Not Available	850	Open in IMG/M
3300016422\|Ga0182039_10969807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	761	Open in IMG/M
3300021560\|Ga0126371_11621686	Not Available	773	Open in IMG/M
3300025928\|Ga0207700_10477133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	1102	Open in IMG/M
3300026552\|Ga0209577_10675116	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300027909\|Ga0209382_11936235	Not Available	568	Open in IMG/M
3300028811\|Ga0307292_10350141	Not Available	623	Open in IMG/M
3300028828\|Ga0307312_10186670	Not Available	1328	Open in IMG/M
3300028875\|Ga0307289_10127880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1042	Open in IMG/M
3300031543\|Ga0318516_10855605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	513	Open in IMG/M
3300031545\|Ga0318541_10622968	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300031640\|Ga0318555_10518669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	646	Open in IMG/M
3300031680\|Ga0318574_10740313	Not Available	576	Open in IMG/M
3300031680\|Ga0318574_10867515	Not Available	529	Open in IMG/M
3300031723\|Ga0318493_10053396	All Organisms → cellular organisms → Bacteria	1919	Open in IMG/M
3300031751\|Ga0318494_10723816	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300031770\|Ga0318521_10596765	Not Available	667	Open in IMG/M
3300031777\|Ga0318543_10459941	Not Available	570	Open in IMG/M
3300031778\|Ga0318498_10208084	All Organisms → cellular organisms → Bacteria → Proteobacteria	886	Open in IMG/M
3300031794\|Ga0318503_10200760	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300031796\|Ga0318576_10040678	All Organisms → cellular organisms → Bacteria	1975	Open in IMG/M
3300031796\|Ga0318576_10152089	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300031819\|Ga0318568_11051585	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300031833\|Ga0310917_10354609	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300031833\|Ga0310917_11086705	Not Available	534	Open in IMG/M
3300031879\|Ga0306919_10946684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	659	Open in IMG/M
3300031880\|Ga0318544_10161064	Not Available	862	Open in IMG/M
3300031890\|Ga0306925_10589503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1175	Open in IMG/M
3300031894\|Ga0318522_10072199	All Organisms → cellular organisms → Bacteria	1251	Open in IMG/M
3300031910\|Ga0306923_11936870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300031941\|Ga0310912_10824243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	716	Open in IMG/M
3300031942\|Ga0310916_11268247	Not Available	607	Open in IMG/M
3300031945\|Ga0310913_10479883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	883	Open in IMG/M
3300031945\|Ga0310913_10575172	Not Available	799	Open in IMG/M
3300031946\|Ga0310910_10670796	Not Available	820	Open in IMG/M
3300031946\|Ga0310910_11528717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. L45	511	Open in IMG/M
3300031954\|Ga0306926_10548511	All Organisms → cellular organisms → Bacteria	1416	Open in IMG/M
3300031959\|Ga0318530_10356482	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300031981\|Ga0318531_10076174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1457	Open in IMG/M
3300032042\|Ga0318545_10268053	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300032052\|Ga0318506_10227137	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300032054\|Ga0318570_10399170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	627	Open in IMG/M
3300032055\|Ga0318575_10196208	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300032059\|Ga0318533_10594047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	812	Open in IMG/M
3300032059\|Ga0318533_10999453	Not Available	613	Open in IMG/M
3300032060\|Ga0318505_10532346	Not Available	553	Open in IMG/M
3300032076\|Ga0306924_10019303	All Organisms → cellular organisms → Bacteria	7215	Open in IMG/M
3300032076\|Ga0306924_10628004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1213	Open in IMG/M
3300032076\|Ga0306924_12065497	Not Available	585	Open in IMG/M
3300032261\|Ga0306920_101086324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1161	Open in IMG/M
3300032261\|Ga0306920_102517935	Not Available	707	Open in IMG/M
3300032261\|Ga0306920_103922913	Not Available	542	Open in IMG/M
3300033289\|Ga0310914_10126763	All Organisms → cellular organisms → Bacteria	2228	Open in IMG/M
3300033289\|Ga0310914_11750369	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300033290\|Ga0318519_10844248	Not Available	565	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.20%
Host-Associated	Host-Associated	5.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.20%
Plants	Host-Associated → Plants	5.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.20%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.17%
Roots	Host-Associated → Plants → Roots	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.16%
Loam	Environmental → Terrestrial → Soil → Loam	13.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.45%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.72%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.72%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	56.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.45%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.01%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.49%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.72%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.72%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1012262793	3300000364	Soil	MRGRASFVLLDVSRPEIANLMVAMLQARDAVERRSWAHPQEPTGEAWWAD
F24TB_113429762	3300000550	Soil	MSNFTLLNLSLPEVATLVAAMVQARDAVDRRSWSHPQEPATE
AF_2010_repII_A100DRAFT_11025762	3300000655	Forest Soil	MPLNFVLLDTALPDVARLVAAMVQARHAVERRSWAHPHRHSR*
AF_2010_repII_A001DRAFT_100565062	3300000793	Forest Soil	MPPNFVLLDVTLPDVARLVAAMVQARDAVESRSWSHPQEPITEE
JGI1027J12803_1043189452	3300000955	Soil	MSPNFILLDSTLPDVARLLVAMIQARDAVETRSWSHPQ
JGI1027J12803_1084250602	3300000955	Soil	PNFTLLEMSHPEVASLVAAVLKARDAVERRSWAHPQEATGEE
JGI10216J12902_1009617261	3300000956	Soil	MTVSPNFVVLDVSHPEVASLVAAMLQARDAVERRSWAHPQE
F14TB_1036825841	3300001431	Soil	MSNFTLLNLSLPEVATLVAAMMQARDAVESRSWSHPQEPTLELDCDFY*
Ga0066672_105294353	3300005167	Soil	MPNFTLLDMSRPEVARLVAAMVQAREAVGRRSWSHPQEPTTEEWWADVLADP
Ga0066388_1010899331	3300005332	Tropical Forest Soil	MPPNFVLLDATLPDVARLLIAMVQARDAVEYRSWSHPQQPTSDEWWA
Ga0066388_1011420523	3300005332	Tropical Forest Soil	MPNFTALDMSLPEVAILVAAMVQARDAVSRRSWSHPQEPITDAWWAD
Ga0066388_1027172212	3300005332	Tropical Forest Soil	MTAAMNFVLLNPPLPDVARLVAAMVQAREAVESRSWSRQ*
Ga0066388_1045545063	3300005332	Tropical Forest Soil	MPPNFVLLDATLADIARLVTAMVQARDAVERRSWWHPQEPTSDEWWA
Ga0066388_1069952732	3300005332	Tropical Forest Soil	MPPNFVLLDVALPDVARLMAAMVQARHAVERRSWSHPQAPTTEEWWA
Ga0008090_156755561	3300005363	Tropical Rainforest Soil	MPNFTALDISLPEVATLVSAMVQARDAVSRRSWSHPQEPTGEEWWAD
Ga0066905_1010411631	3300005713	Tropical Forest Soil	MGPNFALLDMSHREVAILVVAMLQARDAVERRSWTHPQEPTGEEW
Ga0066905_1011838741	3300005713	Tropical Forest Soil	MPNFTALDMSLPEVAILVAAMVQARDAVSRRSWSHPQEPTGEEW
Ga0066903_1013348571	3300005764	Tropical Forest Soil	NFVLLDATLPDVTILVATMLQARDAVERRSWSHPQEPTGET*
Ga0066903_1020415721	3300005764	Tropical Forest Soil	MSPNFILLDAALPDVARLVTAMVQARDAVDCRSWSRPQEPI
Ga0066903_1024882623	3300005764	Tropical Forest Soil	VPNFTALDMSLPEVANLVAAMMRARDAVSRRSWSHPQEPT
Ga0066903_1039585222	3300005764	Tropical Forest Soil	LPNFFLLDATLPDVARLVAAMMQAREAVDRRSWAHPQEPAGEEWWA
Ga0066903_1073019601	3300005764	Tropical Forest Soil	MPNFTALDMGLPEVANLVAAMMRARDAVSRRSWSHPQEPTGEEW
Ga0066903_1086899991	3300005764	Tropical Forest Soil	MPNFTALDMSLPEVATLVSAMVQARDAVSRRSWSHQQEPTGEEWWADVLADPRA
Ga0075365_107609731	3300006038	Populus Endosphere	MPPNFTLLDSALPDRLVAAMVQACDAVDSRSWSHPQEPTTKEWWADVL
Ga0074064_117359363	3300006603	Soil	MPPNFVLLDATLPDVTRLVAAMLQARAAVEHHSWSHPQEPT
Ga0075431_1015541062	3300006847	Populus Rhizosphere	MSNFTLLNLSLPEVATLVAAMVQAREAVESRIWSHPQEPVT
Ga0075425_1027584612	3300006854	Populus Rhizosphere	MTATSPNFVLLDSTRPDIAKLVVAMLQARDAVGRRSWSHPQEPTGEEWWAE
Ga0075424_1023986261	3300006904	Populus Rhizosphere	MPLNFVLLDTALPDVARLVAAMVQARGAVERRSWSHPQAPTTEEWWADV
Ga0126374_112729541	3300009792	Tropical Forest Soil	MPNFTALDISLPEVAILVAAMVQARDAVSRRSWSHPQEPTGEEWWADVLADPRA
Ga0126384_104021223	3300010046	Tropical Forest Soil	MSPNFILLDAAIPDIARLVTAMVQARDAVDRRSWSHP
Ga0126384_109293452	3300010046	Tropical Forest Soil	MAKPSPNFRLLDCARAEIAILVAAMLQARDAVARRSWSHPQEP
Ga0126382_109849352	3300010047	Tropical Forest Soil	MPPNFTLLDSSVTDIASLMAAMLQARDAVERRSWWHPQEPTSDEWWG*
Ga0126373_114683952	3300010048	Tropical Forest Soil	MPPNFVLLDATLPDVTILVATMLQARDAVERRSWSHPQEPTGET*
Ga0126376_122086101	3300010359	Tropical Forest Soil	MPPNFVRLDTTLPDVARLVAAMVQARDAVERQSWWHPQE
Ga0126372_132142041	3300010360	Tropical Forest Soil	AGTAMPPNFVLLDATLPDVTILVATMLQARDAVERRSWSHPQEPTGET*
Ga0126378_112577241	3300010361	Tropical Forest Soil	MPPNFVRLDTTLPDVARLVTAMVQARDAVEHRSWS
Ga0126378_132358971	3300010361	Tropical Forest Soil	MPNFTALDMSLPEVATLVSAMVQARDAVSRRSWSHPQEPTGEEWWADVLA
Ga0126379_105619782	3300010366	Tropical Forest Soil	MPLNFVLLDTALPDVARLVAAMVQARDAVERRSWSHPQAPTTEEWWA
Ga0126379_109130023	3300010366	Tropical Forest Soil	MSPNFILLDAALPDVVRLVTAMVQVRATVDCRSWSRPQEPITEEWWAAAHRS
Ga0126381_1022923722	3300010376	Tropical Forest Soil	MTETSPNFVLLSSTQPDIANLVVAMLQARDAVERRSWSHPQEA
Ga0126381_1047857641	3300010376	Tropical Forest Soil	VAPNFVLLDSTLPDVARLMTAMVQARDAVESCSWSHPQEPMVVAF*
Ga0126383_101026065	3300010398	Tropical Forest Soil	MPPNFTLLDSSVTDIASLMAAMLQARDAVERRSWWHPQEPTSDEWW
Ga0126383_110204181	3300010398	Tropical Forest Soil	MPPNFVLLDAALPDVARLVTAMVQARDAVERRSWWH
Ga0126383_116860212	3300010398	Tropical Forest Soil	MPNFTALDMSLPEVATLVSAMVQARDAVSRRSWSHPQEPTGEEWWADVLADPRARKR
Ga0126383_118736491	3300010398	Tropical Forest Soil	VLNFAVLDATLPDVARLVAAMVQAREAVDRRSWAHPQEPAGEEWWAD
Ga0124850_10075925	3300010863	Tropical Forest Soil	MPNFTALDMSLPEVATLVAAMVQARDAVSRRSWSHPQEPTVEEWWTDVLADP
Ga0164299_106461272	3300012958	Soil	MPPNFVLPDAALPDVARLVAAMVQARDAVGRRSWSHPQEPTGEE*
Ga0126369_126086751	3300012971	Tropical Forest Soil	MPNFTALDMSLPEVATLVAAMVQARDAVKRRSWPHPQEPTGEEWWADVLADPRA
Ga0163162_106240833	3300013306	Switchgrass Rhizosphere	MPNFIMLDMVRPEVARLVAAMLQARDAVEHRSWSHPQEP
Ga0132257_1029341362	3300015373	Arabidopsis Rhizosphere	MKGVREFVVLDVSRPEVVSLMSAMLQARTAVERRSWLHPHEPTDEEWWA
Ga0132257_1038790031	3300015373	Arabidopsis Rhizosphere	MSNFTLLNLSLPDVARLLIAMVQARDAVESRSWSHPQEPTPEEWWADVLADPR
Ga0182036_102987371	3300016270	Soil	MTATSPNFVLLDSTWPDIANLVVAMLQARDAVKRRSWSYTHEP
Ga0182036_119240492	3300016270	Soil	MPPNFVLLDATLPNVASLLIAMVQARDAVESRSWSHPQEPTTEE
Ga0182033_103783373	3300016319	Soil	MSPNFALLDMSHPEVASLVAAMVQARDAVDRRSWAHPQEPTG
Ga0182033_109372081	3300016319	Soil	MPNFTTLDMSLPEVANLVAAMMRARDAVSRRSWSHPQEPTGEEWW
Ga0182033_117965042	3300016319	Soil	MPPNFVRLDTTLPDVARLVTAMLQARDAVERQSWWHPQEPTSDEWWADVLA
Ga0182035_102691681	3300016341	Soil	VPNFAVLDATLPDVARLVAAMVQARHAVESRSWWHPQEPTSDEWWAD
Ga0182035_103549901	3300016341	Soil	VPPNFVLLDAALPEVARLVAAMMQARDAVERQSWSHPQEPTGEEW
Ga0182035_105919291	3300016341	Soil	MPNFTALDMSLPEVATLVSAMVQARDAVEHRSWSHPQEPTG
Ga0182032_104107151	3300016357	Soil	MPNFTALDMSLPEGATLVAAMVQARDVVSRRSWSHPQEPTGEAWWADVL
Ga0182032_118751681	3300016357	Soil	MPPNLVLLDTALPDIASLMAAMLQARDAVERRSWSHPQEPT
Ga0182040_102877831	3300016387	Soil	MPNFTALDMSLPEVATLVAAMVQARDAVSRRSWSHPQEPTGEEWWADVLADPRA
Ga0182040_113226481	3300016387	Soil	MPPNFVLLDAALPDLARLVTAMVQARDAVVRRSWSHPQEPTGDD
Ga0182037_102226953	3300016404	Soil	VPNFAVLDATLPDVARLVAAMVQARHAVESRSWWHPQEPTSDEWW
Ga0182039_107753262	3300016422	Soil	MPNFTALDMSLPEVATLVAAMVQARDAVSRRSWSHPQEP
Ga0182039_109698073	3300016422	Soil	MPQDVPNFALLDMSHPEVAGLVVAMVQACEAVALRSWSHPQEPITDAWWADVLAD
Ga0210384_109741701	3300021432	Soil	MTVSPNFVVLDVRRPEVTTLMTAMLQARDAVERRSWSHP
Ga0126371_112872762	3300021560	Tropical Forest Soil	MPPNFVLLDTALPDVARLVAAMVQAREAIDRRSWSHP
Ga0126371_116216862	3300021560	Tropical Forest Soil	MPNFTALDMSLPEVATLVAAMVQARDAVSRRSWSHPQEPT
Ga0207684_109144771	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VVTVTPNFALLEMSHPEIASLVAAMLQVRDAVEHRSWSHSQEL
Ga0207700_104771332	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MPPNFTLLDVSRPEVARLIAAMVQARDAVEHRSWSHPQEPTGEEWWADVL
Ga0209647_13140351	3300026319	Grasslands Soil	MYPNFVLLDSAQPEIASMVSAMLQAREAVAHRSWAHPQEPTS
Ga0209577_106751161	3300026552	Soil	MPPNFVLLDAALPDVARLVAAMAQARDAVEHRSWSHPQEATGEEWWADVV
Ga0209382_119362352	3300027909	Populus Rhizosphere	MPPNFMLLDATLSDVARLLIAMVQAGDAVDSRSWSHPQEPTTEDW
Ga0307313_102639121	3300028715	Soil	MARASPNFIFLDMSRPELASLVTAMLQARDAVARRSWS
Ga0307292_103501411	3300028811	Soil	MSPNFSLLDATLPDVARLVAAMLQARAAVSRRSWSHPQEPITEELWADVLADPR
Ga0307312_101866701	3300028828	Soil	MPPNFALLDVSRPEVARLIAAMVQARDAVELRSWSHPQEPTGEEWW
Ga0307289_101278802	3300028875	Soil	MATGSPNFVLLDATLPDMARLVAALVQARDAVESRSWSHPQEPTSEDW
Ga0318516_108556052	3300031543	Soil	VPNFAVLDATLPDVARLVAAMVQAREAVDRRSWAHPQ
Ga0318541_106229681	3300031545	Soil	MPPNFVLLDTTLPDVARLVAAMIQARYAIGRRSWSHPQEPTSDEW
Ga0318515_106518691	3300031572	Soil	MASNFALLDVSLPDVARLVAAMVQARDAVERRSWAHPQEP
Ga0310915_102092124	3300031573	Soil	VIAPNFALLDAGRPEVARLVAAMLQARDAVARRSWS
Ga0318555_105186691	3300031640	Soil	VPNFAVLDATLPDVARLVAAMVQARHAVESRSWWHPQEPTSDEWWADV
Ga0318542_104402901	3300031668	Soil	VIAPNFALLDAGRPEVARLVAAMLQARDAVARRSWSHPQAPTTE
Ga0318574_107403132	3300031680	Soil	MPPNFVLLDTTLPDVARLVAAMIQARYAICRRSWSHPQEPTGEAW
Ga0318574_108675152	3300031680	Soil	MPPNFAMLDISQPDVARLVAAMVQARDAVERQSWWHPQEPTSDEW
Ga0318493_100533961	3300031723	Soil	MASNFVLLDAPRSDVARLVAAIVQARDAVERRSWSHPQEPTTKE
Ga0306918_104647572	3300031744	Soil	MTATSPNFVLLDSTWPDIANLVVAMLQARDAVKRRSWSHPQ
Ga0318494_101564533	3300031751	Soil	VIAPNFALLDAGRPEVARLVAAMLQARDAVARRSWSHPQAPT
Ga0318494_107238161	3300031751	Soil	MPPNFALLDMSLADVTRLVTAMAQARDAVESRSWSHPQEPTTEEWWADVLADPR
Ga0318521_105967651	3300031770	Soil	MPQIAPNFALLDMSHPEVAILVAAMVQARDAVDHRSWAHPQEPTGEEWWT
Ga0318543_104599411	3300031777	Soil	MPPNFVLLDAVLPDVARLVTAMVQARDAVEHRSWSHPQE
Ga0318498_102080841	3300031778	Soil	MASNFVLLDAPRSDVARLVAAIVQARDAVERRSWSHPQEPTTKEWWADVLADPRAR
Ga0318547_101492061	3300031781	Soil	VIAPNFALLDAGRPEVARLVAAMLQARDAVARRSWSHPQAPTTEE
Ga0318547_101553651	3300031781	Soil	MPLNFVLLDTALPDVARLVAAMVQARDAVERRSWS
Ga0318503_102007602	3300031794	Soil	MVMPPNFALLDMSLADVTRLVTAMAQARDAVESRSWSHPQEP
Ga0318576_100406784	3300031796	Soil	MASNFVLLDAPRSDVARLVAAIVQARDAVERRSWSHPQEPTTKEWWADVL
Ga0318576_101520892	3300031796	Soil	MPNFTALDMSLPEVATLVAAMVQARDVVSRRSWSNPQEPTGEAWWAD
Ga0318568_110515851	3300031819	Soil	VPPNFILFDASLPDVAKLVTAMVQARDAVERRSWSHPQEPTSDEWW
Ga0310917_103546091	3300031833	Soil	MPNFTALDMSLPEVATLVAAMVQARDAVSRRSWSHPQEPTGEEW
Ga0310917_110867051	3300031833	Soil	MPPNFVLLDATLPDVTRLVAAMVQARDAVERQSWWHPQEPPSDEWWADVLAD
Ga0306919_109466842	3300031879	Soil	MPNFTALDMSLPEVATLVAAMVQARDAVSRRSWSHPQEPTGEEWWADVLAD
Ga0306919_111590572	3300031879	Soil	MPPNFVLLDATLPDVAQLVTAMLQARDAVERRSWSHPQEP
Ga0318544_101610643	3300031880	Soil	MPPNFVLLDAVLPDVARLVTAMVQARDAVESRSWS
Ga0306925_105895031	3300031890	Soil	LFDQLQLQMPNFTALDMSLPEVATLVAAMVQARDAVSRRSWSHPQEPTGEEWWA
Ga0318522_100721992	3300031894	Soil	MVMPPNFALLDMSLADVTRLVTAMAQARDAVESRSWSHPQEPTTEEWWAD
Ga0318522_104028171	3300031894	Soil	VAMVTPNFSLLEISHPEIASLVAAMLQARDAVERRSWAHPQEPTG
Ga0306923_119368701	3300031910	Soil	MPNFTALDMSLPEVATLVAAMVQARDAVSRRSWSHP
Ga0306921_101064593	3300031912	Soil	VSPNCVLLDSCNPEIASLIAAMLHARDAVERRSWAHPQEPTGEEW
Ga0310912_108242431	3300031941	Soil	MSPNFVLLDATLPDVARLVTAMVQARDTVEQRSWSHPQ
Ga0310916_112682472	3300031942	Soil	MPLNFVLLDTTLPDVARLVAAMVQARDAVERRSWSHPQAPTTEEW
Ga0310913_104798832	3300031945	Soil	MAANFVLLDSTLPDVARLVIAMVQACEAVDRRSWSHPQEPTTEEWTSKR
Ga0310913_105751722	3300031945	Soil	MPNFTALDMSLPEVATLVVAMVQARDTVSRRSWAHPQEPTGEEWWADVL
Ga0310910_106707961	3300031946	Soil	MPNFTALDMSLPEVAILVAAMVQARDAVSHRSWSHPQEPTGEAWWAD
Ga0310910_115287171	3300031946	Soil	MPNFTALDMSLPEVATLVAAMVQARDAVTRRSWSHPQEPTGEEWWADVLADP
Ga0306926_105485113	3300031954	Soil	MPNFTALDMSLPEVATLVAAMVQARDAVSRRSWSHPQEPITDAWWADV
Ga0318530_103564822	3300031959	Soil	MPNFTALDMSLPEGATLVAAMVQARDVVSRRSWSHPQEPTGEAWWADV
Ga0318531_100761743	3300031981	Soil	VLNFAVLDATLPDVARLVAAMVQAREAVDRRSWAHPQEPAGEEWW
Ga0318549_101719501	3300032041	Soil	VIAPNFALLDAGRPEVARLVAAMLQARDAVARRSWSHPQ
Ga0318545_102680532	3300032042	Soil	MPNFTALDMSLPEVATLVAVMVQARDAVSRRSWSHPQE
Ga0318558_100481541	3300032044	Soil	MVTPNFSLLEISHPEIASLVAAMLQARDAVERRSWAHQQE
Ga0318506_102271371	3300032052	Soil	MPNFTALDMSLPEVATLVAAMVQARDVVSRRSWSHPHEPT
Ga0318570_103991702	3300032054	Soil	MPPNFAMLDISQPDVARLVAAMVQARDAVERQSWWHPQEPTSDE
Ga0318575_101962082	3300032055	Soil	MPNFTALDMSLPEVATLVAAMVQARDAVSRRSWSHPQELTGE
Ga0318533_105940471	3300032059	Soil	MPPNFAMLDISQPDVARLVAAMVQARDAVERQSWWHPQ
Ga0318533_109994532	3300032059	Soil	MPNFTALDMSLPEVATLVAAMVQARDAVSRRSWSHPQEPTGEEWWA
Ga0318505_105323461	3300032060	Soil	MPNFTALDMSLPEVANLVAAMMRARDAVSRRSWSHPQEPTGEEWWAD
Ga0306924_1001930315	3300032076	Soil	MPPNFVLLNATLPDVTRLVTAMVQARDAVESRSWSHPQEPTGEEWWADVLADP
Ga0306924_106280043	3300032076	Soil	MPNFTALDMSLPEVATLVAGMVQARDAVSRRSWSHPQEPTGEEWWADV
Ga0306924_120654972	3300032076	Soil	MPQDVPNFALLDMSHPEVAGLVVAMVQACEAVALRSWSHPQEP
Ga0318540_101139251	3300032094	Soil	MINFVLLDPSRPEVARLVAAMVQAREVVMRRSWSHPHQR
Ga0306920_1010697691	3300032261	Soil	MPNFTALDMSLPEVATLVAAMLQARDAVSRRSWSHPQ
Ga0306920_1010863243	3300032261	Soil	MPNFTALDMSLPEVATLVAGMVQARDAVSRRSWSHPQEPTGEEWWADVLADPRARK
Ga0306920_1025179351	3300032261	Soil	MSPNFALLDMSQPDVARLVRAMTQARDAVERRSWSHPQEPTTEEW
Ga0306920_1039229132	3300032261	Soil	MPPNFVRLDTTLPDVARLMTAMLQARDAVERQSWWHPQEPTSDEW
Ga0310914_101267631	3300033289	Soil	MPPNFVRLDTTLPDVARLVTAMLQARDAVERQSWWHPQEPTSDEWWADV
Ga0310914_117503691	3300033289	Soil	VPPNFILFDASLPDVAKLVTAMVQARDAVERRSWSHPQ
Ga0318519_108442483	3300033290	Soil	MPNFTALDMSLPEVANLVAAMMRARDAVSRRSWSHPQEPTGESEY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056164

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences