Metagenome / Metatranscriptome Family F056118

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056118
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	58 residues
Representative Sequence	MPQPQFIPSPLKIIERRRCQNCGATLMMTGIEPMGLGTDRRTFECDQCGHEEELLVKF
Number of Associated Samples	111
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.91 %
% of genes near scaffold ends (potentially truncated)	35.51 %
% of genes from short scaffolds (< 2000 bps)	94.20 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.246 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (25.362 % of family members)
Environment Ontology (ENVO)	Unclassified (28.261 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.449 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 44.83% Coil/Unstructured: 55.17%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF13439	Glyco_transf_4	14.49
PF04773	FecR	7.25
PF13545	HTH_Crp_2	2.90
PF02705	K_trans	0.72
PF00196	GerE	0.72
PF08734	GYD	0.72
PF07045	DUF1330	0.72
PF04199	Cyclase	0.72
PF04392	ABC_sub_bind	0.72
PF01734	Patatin	0.72
PF13181	TPR_8	0.72
PF01654	Cyt_bd_oxida_I	0.72
PF00571	CBS	0.72
PF00589	Phage_integrase	0.72
PF06035	Peptidase_C93	0.72
PF00561	Abhydrolase_1	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	0.72
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.72
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.72
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.72
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.72
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.72
COG3672	Predicted transglutaminase-like protein	Posttranslational modification, protein turnover, chaperones [O]	0.72
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.72
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.72
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
All Organisms	root	All Organisms	42.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
cellular organisms	root	All Organisms → cellular organisms	42.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.61 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	29.71 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	10.87 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	9.42 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2.17 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	10.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8.70 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	2.17 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.72 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	10.87 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	2.17 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.45 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.72 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.72 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.72 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	10.87 %
Myxococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	2.17 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.45 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.72 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.72 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.72 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	10.87 %
unclassified Myxococcus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus	2.17 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.45 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.72 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.72 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.72 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	10.87 %
Myxococcus sp. RHSTA-1-4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. RHSTA-1-4	2.17 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.45 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.72 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.72 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.72 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573000\|GPBTN7E01A27TL	Not Available	509	Open in IMG/M
3300002899\|JGIcombinedJ43975_10021261	Not Available	1043	Open in IMG/M
3300005168\|Ga0066809_10055598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	895	Open in IMG/M
3300005289\|Ga0065704_10355208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	804	Open in IMG/M
3300005294\|Ga0065705_10220990	All Organisms → cellular organisms → Bacteria → Proteobacteria	1319	Open in IMG/M
3300005295\|Ga0065707_10836621	Not Available	586	Open in IMG/M
3300005328\|Ga0070676_10801855	Not Available	695	Open in IMG/M
3300005331\|Ga0070670_101140397	Not Available	711	Open in IMG/M
3300005338\|Ga0068868_100382274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1212	Open in IMG/M
3300005338\|Ga0068868_101492874	Not Available	633	Open in IMG/M
3300005347\|Ga0070668_102044369	Not Available	529	Open in IMG/M
3300005353\|Ga0070669_100781345	Not Available	811	Open in IMG/M
3300005355\|Ga0070671_100120285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2209	Open in IMG/M
3300005438\|Ga0070701_10504958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	786	Open in IMG/M
3300005440\|Ga0070705_101334691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	596	Open in IMG/M
3300005466\|Ga0070685_10480176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	876	Open in IMG/M
3300005545\|Ga0070695_100801058	Not Available	755	Open in IMG/M
3300005617\|Ga0068859_101830152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	670	Open in IMG/M
3300006049\|Ga0075417_10086870	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300006049\|Ga0075417_10214693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	914	Open in IMG/M
3300006049\|Ga0075417_10380364	Not Available	695	Open in IMG/M
3300006049\|Ga0075417_10382699	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300006049\|Ga0075417_10411258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	670	Open in IMG/M
3300006057\|Ga0075026_100604782	Not Available	644	Open in IMG/M
3300006057\|Ga0075026_100881153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	548	Open in IMG/M
3300006163\|Ga0070715_10234096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	952	Open in IMG/M
3300006172\|Ga0075018_10241382	Not Available	872	Open in IMG/M
3300006194\|Ga0075427_10001195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3303	Open in IMG/M
3300006196\|Ga0075422_10215621	Not Available	795	Open in IMG/M
3300006196\|Ga0075422_10530518	Not Available	537	Open in IMG/M
3300006580\|Ga0074049_12723539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	758	Open in IMG/M
3300006638\|Ga0075522_10041767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2710	Open in IMG/M
3300006844\|Ga0075428_100490641	All Organisms → cellular organisms → Bacteria	1314	Open in IMG/M
3300006844\|Ga0075428_100680466	Not Available	1096	Open in IMG/M
3300006844\|Ga0075428_100833842	Not Available	979	Open in IMG/M
3300006844\|Ga0075428_100973615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	898	Open in IMG/M
3300006845\|Ga0075421_101630365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	700	Open in IMG/M
3300006852\|Ga0075433_10857801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	793	Open in IMG/M
3300006853\|Ga0075420_100373003	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300006853\|Ga0075420_101765141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	529	Open in IMG/M
3300006854\|Ga0075425_102224237	Not Available	610	Open in IMG/M
3300006854\|Ga0075425_102966120	Not Available	519	Open in IMG/M
3300006871\|Ga0075434_100623362	Not Available	1097	Open in IMG/M
3300006871\|Ga0075434_101479724	Not Available	688	Open in IMG/M
3300006880\|Ga0075429_100105175	Not Available	2465	Open in IMG/M
3300006904\|Ga0075424_100281051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1770	Open in IMG/M
3300006904\|Ga0075424_100387592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1489	Open in IMG/M
3300006904\|Ga0075424_100824940	Not Available	989	Open in IMG/M
3300006904\|Ga0075424_101908069	Not Available	627	Open in IMG/M
3300007076\|Ga0075435_100151399	All Organisms → cellular organisms → Bacteria	1950	Open in IMG/M
3300009092\|Ga0105250_10393779	Not Available	613	Open in IMG/M
3300009094\|Ga0111539_11075276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	935	Open in IMG/M
3300009156\|Ga0111538_12437833	Not Available	656	Open in IMG/M
3300009162\|Ga0075423_12695087	Not Available	544	Open in IMG/M
3300009168\|Ga0105104_10683284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	589	Open in IMG/M
3300009174\|Ga0105241_12167064	Not Available	551	Open in IMG/M
3300010400\|Ga0134122_10314389	Not Available	1350	Open in IMG/M
3300010401\|Ga0134121_11644212	Not Available	663	Open in IMG/M
3300011000\|Ga0138513_100081827	Not Available	501	Open in IMG/M
3300011119\|Ga0105246_10126917	All Organisms → cellular organisms → Bacteria	1899	Open in IMG/M
3300012499\|Ga0157350_1035186	Not Available	575	Open in IMG/M
3300012507\|Ga0157342_1036686	Not Available	640	Open in IMG/M
3300012507\|Ga0157342_1065606	Not Available	542	Open in IMG/M
3300012515\|Ga0157338_1034413	Not Available	662	Open in IMG/M
3300012931\|Ga0153915_10801606	Not Available	1092	Open in IMG/M
3300012958\|Ga0164299_11216191	Not Available	571	Open in IMG/M
3300012961\|Ga0164302_10510084	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. RHSTA-1-4	851	Open in IMG/M
3300012986\|Ga0164304_10300525	Not Available	1100	Open in IMG/M
3300013306\|Ga0163162_12898751	Not Available	552	Open in IMG/M
3300013307\|Ga0157372_11778013	Not Available	709	Open in IMG/M
3300014325\|Ga0163163_10591600	Not Available	1173	Open in IMG/M
3300014745\|Ga0157377_10244672	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. RHSTA-1-4	1160	Open in IMG/M
3300017792\|Ga0163161_11614539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	572	Open in IMG/M
3300018028\|Ga0184608_10438474	Not Available	563	Open in IMG/M
3300018031\|Ga0184634_10374233	Not Available	653	Open in IMG/M
3300018054\|Ga0184621_10035121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1621	Open in IMG/M
3300018054\|Ga0184621_10230468	Not Available	662	Open in IMG/M
3300018073\|Ga0184624_10057861	Not Available	1587	Open in IMG/M
3300018076\|Ga0184609_10549509	Not Available	522	Open in IMG/M
3300018081\|Ga0184625_10104435	Not Available	1465	Open in IMG/M
3300018081\|Ga0184625_10459454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	651	Open in IMG/M
3300019869\|Ga0193705_1055887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	805	Open in IMG/M
3300019873\|Ga0193700_1056190	Not Available	610	Open in IMG/M
3300019879\|Ga0193723_1134205	Not Available	677	Open in IMG/M
3300020018\|Ga0193721_1062510	Not Available	974	Open in IMG/M
3300021344\|Ga0193719_10133550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1076	Open in IMG/M
3300021951\|Ga0222624_1427762	Not Available	518	Open in IMG/M
3300022694\|Ga0222623_10078936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1276	Open in IMG/M
3300022756\|Ga0222622_11222728	Not Available	553	Open in IMG/M
3300025862\|Ga0209483_1054491	Not Available	1869	Open in IMG/M
3300025900\|Ga0207710_10108273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1318	Open in IMG/M
3300025906\|Ga0207699_10229988	Not Available	1270	Open in IMG/M
3300025906\|Ga0207699_10630151	Not Available	782	Open in IMG/M
3300025914\|Ga0207671_10963498	Not Available	673	Open in IMG/M
3300025915\|Ga0207693_10144442	All Organisms → cellular organisms → Bacteria	1871	Open in IMG/M
3300025931\|Ga0207644_10621026	Not Available	898	Open in IMG/M
3300026095\|Ga0207676_11168737	Not Available	762	Open in IMG/M
3300027456\|Ga0207482_105763	Not Available	548	Open in IMG/M
3300027560\|Ga0207981_1008177	Not Available	1856	Open in IMG/M
3300027591\|Ga0209733_1156645	Not Available	551	Open in IMG/M
3300027629\|Ga0209422_1002911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4149	Open in IMG/M
3300027743\|Ga0209593_10257457	Not Available	605	Open in IMG/M
3300027873\|Ga0209814_10331617	Not Available	664	Open in IMG/M
3300027873\|Ga0209814_10419197	Not Available	589	Open in IMG/M
3300027880\|Ga0209481_10004984	All Organisms → cellular organisms → Bacteria	5616	Open in IMG/M
3300027907\|Ga0207428_10127718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1947	Open in IMG/M
3300027907\|Ga0207428_10378581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1039	Open in IMG/M
3300027907\|Ga0207428_11169048	Not Available	536	Open in IMG/M
3300027915\|Ga0209069_10120100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1283	Open in IMG/M
3300028380\|Ga0268265_11221129	Not Available	750	Open in IMG/M
3300028713\|Ga0307303_10144192	Not Available	569	Open in IMG/M
3300028784\|Ga0307282_10367447	Not Available	696	Open in IMG/M
3300028791\|Ga0307290_10359975	Not Available	532	Open in IMG/M
3300028814\|Ga0307302_10194687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	988	Open in IMG/M
3300028884\|Ga0307308_10565934	Not Available	545	Open in IMG/M
3300028885\|Ga0307304_10510716	Not Available	551	Open in IMG/M
3300028885\|Ga0307304_10610817	Not Available	505	Open in IMG/M
3300030554\|Ga0247640_1132374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	604	Open in IMG/M
3300030563\|Ga0247653_1007827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	836	Open in IMG/M
3300030574\|Ga0247648_1075413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	705	Open in IMG/M
3300030592\|Ga0247612_1107789	Not Available	648	Open in IMG/M
3300030601\|Ga0247650_1155850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	520	Open in IMG/M
3300030608\|Ga0247651_10034508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	977	Open in IMG/M
3300030945\|Ga0075373_11493298	Not Available	549	Open in IMG/M
3300031170\|Ga0307498_10000287	All Organisms → cellular organisms → Bacteria	6350	Open in IMG/M
3300031170\|Ga0307498_10183198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	719	Open in IMG/M
3300031226\|Ga0307497_10055379	Not Available	1407	Open in IMG/M
3300031446\|Ga0170820_16470565	Not Available	554	Open in IMG/M
3300031469\|Ga0170819_13520618	All Organisms → cellular organisms → Bacteria → Proteobacteria	887	Open in IMG/M
3300031469\|Ga0170819_14330899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	976	Open in IMG/M
3300031538\|Ga0310888_10867642	Not Available	562	Open in IMG/M
3300031740\|Ga0307468_100891684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	770	Open in IMG/M
3300031740\|Ga0307468_101260251	Not Available	670	Open in IMG/M
3300031858\|Ga0310892_10107632	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. RHSTA-1-4	1540	Open in IMG/M
3300031943\|Ga0310885_10570669	Not Available	624	Open in IMG/M
3300032000\|Ga0310903_10568113	Not Available	600	Open in IMG/M
3300032211\|Ga0310896_10145701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1117	Open in IMG/M
3300033433\|Ga0326726_10014877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6795	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.52%
Host-Associated	Host-Associated	43.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	43.48%
Plants	Host-Associated → Plants	43.48%
Aquatic	Environmental → Aquatic	13.04%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.03%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.78%
Sediment	Environmental → Aquatic → Sediment	10.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.97%
Freshwater	Environmental → Aquatic → Freshwater	2.90%
Peat	Environmental → Terrestrial → Peat	0.72%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.72%
Roots	Host-Associated → Plants → Roots	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	30.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.14%
Loam	Environmental → Terrestrial → Soil → Loam	7.25%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.25%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.35%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.17%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.72%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.72%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	30.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.14%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.35%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.62%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.17%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.45%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.72%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.72%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.72%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	25.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.04%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.07%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.62%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.17%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.17%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.17%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.45%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.45%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.45%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.45%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.72%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.72%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.72%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.72%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.72%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012499	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610	Environmental	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027456	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-E (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030554	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb5 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030563	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb6 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030574	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030592	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030601	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db3 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030608	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb4 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N55_06441110	2189573000	Grass Soil	FIPSPLKIIERRPRCQNCGARMMMTGIEPMGLGTDRRTFECDQCGREEELLVKF
JGIcombinedJ43975_100212611	3300002899	Soil	MPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLGTDRRTFECDQCGHEEELLVNSFH
Ga0066809_100555981	3300005168	Soil	MPQPQFIPSPLKIIERRRCQNCGARMMMTGIEPMGLGTDRRTFECDQCGHEEELLVKF*
Ga0065704_103552082	3300005289	Switchgrass Rhizosphere	MAQPQFIPSPLKIIERRPRCQNCGARMMMSGIEPMGLGTDRRTFECDQCGLEEELLVKF*
Ga0065705_102209901	3300005294	Switchgrass Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLDTDRRTFACDQCGHEEELLVKF*
Ga0065707_108366211	3300005295	Switchgrass Rhizosphere	PSPLKIIERRRCQNCGATLIMTGIEPIGLGTDRRTFECDQCGHEEELLVNSFHYGDRP*
Ga0070676_108018552	3300005328	Miscanthus Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLTMTGIEPIGLGTDRRTFECDQCGHEEELLVKF*
Ga0070670_1011403971	3300005331	Switchgrass Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLVTDRRTFECDQCGHEEELLVNSFH
Ga0068868_1003822741	3300005338	Miscanthus Rhizosphere	RLKQEEPMPQPQFIPSPLKIIERRRCQNCGATLTMTGIEPMGLDTDRRTFECDQCGREEELLVKF*
Ga0068868_1014928742	3300005338	Miscanthus Rhizosphere	LKIIERRRCQNCGATLIMTGIEPIGLGTDRRTFECDQCGHEEELLVNSFH*
Ga0070668_1020443691	3300005347	Switchgrass Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLMMTGIEPIGLGTDRRTFECDQCGHEEELLVNSFH
Ga0070669_1007813451	3300005353	Switchgrass Rhizosphere	MLRPQFIPNPLKIIERRRCQNCGATLIMIGIEAIGLGTDRRTFACDQCGHEEELLVNSF*
Ga0070671_1001202856	3300005355	Switchgrass Rhizosphere	PSPLKIIERRRCQNCGATLIMIGIEAIGLGTDRRTFACDQCGHEEELLVNSF*
Ga0070701_105049583	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	PSPLKIIERRRCQNCGATLMMTGIEPIGLGTDRRTFECDQCGHEEELLVNSFH*
Ga0070705_1013346911	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLMMTGIEPMGLGTDRRTFECDQCGHEEELLVNSFH
Ga0070685_104801764	3300005466	Switchgrass Rhizosphere	PSPLKIIERRRCQNCGATLTMTGIEPIGLGTDRRTFECDQCGHEEELLVNSFH*
Ga0070695_1008010581	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLIMIGIEPIGLVTDRRTFECDQCGHEEELLVNSFH
Ga0068859_1018301523	3300005617	Switchgrass Rhizosphere	FIPSPLKIIERRRCQNCGATMMMTGIEPIGQGTDRRTFECDQCGHEEELLVNSFH*
Ga0075417_100868702	3300006049	Populus Rhizosphere	MPQPQFIPSPLKIIERRPRCQNCGARMMVRGIEPMGQGSDWRTFECDQCGLEEELPVKF*
Ga0075417_102146932	3300006049	Populus Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLGTDRRTFECDQCGHEEELLVKF*
Ga0075417_103803642	3300006049	Populus Rhizosphere	MAQPQFIPSSLKIIERRPRCQNCGARMMMSGIEPMGLGTDRRTFECDQC
Ga0075417_103826991	3300006049	Populus Rhizosphere	FIPSPLKIIERRPRCQNCGARMMMSGIEPMGLGTDRRTFACDQCGLEEELLVKF*
Ga0075417_104112582	3300006049	Populus Rhizosphere	MLRPQFIPSPLKMIERRRCQNCGATLTMTGIEAIGLGTDRRTFACDQCGHEEELLVNSFP
Ga0075026_1006047821	3300006057	Watersheds	PSPLKIIERRRCQNCGATMMMAGIGTDRRTFACDQCGHEEELLVKF*
Ga0075026_1008811531	3300006057	Watersheds	MPQPQFIPSPLKIIERRRCQNCGATMMMTGIEPMGLGTDRRTFECDQCGHEEELLVKF*
Ga0070715_102340961	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLTMTGIEPMGLDTDRRTFECDQCGREEELLVKF*
Ga0075018_102413822	3300006172	Watersheds	MPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLGTDRRTFECDQCGHEEELLINSFH
Ga0075427_100011953	3300006194	Populus Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGTTMMMTGIEPMEPGTDRRTFACDQCGHEEELLVKF*
Ga0075422_102156213	3300006196	Populus Rhizosphere	MLRPHFIPSPLKIIERRRCQNCGATMMMTGIEAIGLGTDRRTFECDQCGHEEELLVNSF*
Ga0075422_105305182	3300006196	Populus Rhizosphere	MPQPQFIPSPLKIIERRPRCQNCGARMMMSGIEPMGLGTDRRTFECDQCGLEEELLVKF*
Ga0074049_127235391	3300006580	Soil	MPQPQFIPSPLKIIERRRCQNCGARMMMIGIEPMGLGTDRRTFECDQCGHEEELLVKF*
Ga0075522_100417675	3300006638	Arctic Peat Soil	MPQSQSTTVPLLIIERRRCPNCGARMMMTLIEPAGRGTDQRTFECDHEEKLLVTFR*
Ga0075428_1004906413	3300006844	Populus Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPLGLGTDRRTFACDQCGHDEELLVNSFH
Ga0075428_1006804663	3300006844	Populus Rhizosphere	MAESQFVPSPLKIIERRPRCLNCGARMMMTGTEPTELGTDRRTFACDQC
Ga0075428_1008338422	3300006844	Populus Rhizosphere	MAQPQFVPSPLKIIERRPRCLNCGARMMMTGTEPMGLGADRRSFECDQCGREEEFLVKFW
Ga0075428_1009736152	3300006844	Populus Rhizosphere	MPQPQFVPSPLKIIERRPRCQNCGARMLMTGVEPMGLGTDRRTFECDQCGYEEELLVRS*
Ga0075421_1016303652	3300006845	Populus Rhizosphere	MLRPQFIPSPLTIIERRRCQNCGATLTMTGIEAIGLGTDRRTFACDQCGHEEELLVNSFP
Ga0075433_108578012	3300006852	Populus Rhizosphere	MPQPQFIPSPLKIIARRRCQNCGATLTMTGIEPIGLVTDRRTFECDQCGHEEELLV
Ga0075420_1003730033	3300006853	Populus Rhizosphere	MLRPQFIPSPLKMIERRRCQNCGATLTMTGIEAIGLGTDRRTFACDQCGHEEGLLVNSFP
Ga0075420_1017651411	3300006853	Populus Rhizosphere	EPMPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLGTDRRTFECDQCGHEEELLVKF
Ga0075425_1022242372	3300006854	Populus Rhizosphere	MLRPQFIPSPLKIIERRRCENCGATLTMTGIEPIGLGTDRRTFACDQCGHEEELLVNSF*
Ga0075425_1029661202	3300006854	Populus Rhizosphere	MLRPQFIPSPLKMIERRRCQSCGATLIMTGIEAIGLGTDRRTFACDQCGHEEELLVNSFP
Ga0075434_1006233623	3300006871	Populus Rhizosphere	MLRPQSIPSPLKIIERRRCQNCGATLIMTGIEAIWLGTDRRTFACDQCGREEELLVNSF*
Ga0075434_1014797242	3300006871	Populus Rhizosphere	SRLEQEEPMPQPQFIPSPLKIIERRPRCQNCGARMMVRGIEPMGQGSDWRTFECDQCGLEEELPVKF*
Ga0075429_1001051758	3300006880	Populus Rhizosphere	MLRPQFIPSPLKIIERRRCQNCGATLIMTGIEAIGLGTDRRTFECDQCGHEEELLVNSF*
Ga0075424_1002810512	3300006904	Populus Rhizosphere	MPQPQFIPSPLKIIERRPRCQNCGAGMMMRGIEPMGQGSDWRTFECDQCGLEEELPVKF*
Ga0075424_1003875921	3300006904	Populus Rhizosphere	MPQPQFIPSPLKIIERRPRCQNCGARMIMRGIEPMGQGTDWRTFDCDQCGLEEELPVKF*
Ga0075424_1008249401	3300006904	Populus Rhizosphere	PLKMIERRRCQSCGATLIMTGIEAIGLGTDRRTFECDQCGHEEELLVNSF*
Ga0075424_1019080691	3300006904	Populus Rhizosphere	MAQPQFVPSPLKIIERRRCQNCGATLIMTGIEAIWLGTDRRTFACDQCGHEEKLLVNSF*
Ga0075435_1001513992	3300007076	Populus Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLMMTGIEPIGLGTDRRTFACDQCGHEEELLVNSF*
Ga0105250_103937792	3300009092	Switchgrass Rhizosphere	MPQPQFIPSPLKIVERRRCQNCGATMMMTGIEPIGLVTDRRTFECDQCGHEEELLVNSFH
Ga0111539_110752761	3300009094	Populus Rhizosphere	EEPMPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLGTDRRTFECDQCGHEEELLVKF*
Ga0111538_124378331	3300009156	Populus Rhizosphere	FIPSPLKIIERRPRCQNCGARMMMSGIEPMGLGTDRRTFECDQCGLEEELLVKF*
Ga0075423_126950872	3300009162	Populus Rhizosphere	MAQPQFVPSPLKIIERRPRCLNCGARMMMTGTEPMGLGADRRSFECDQCGREEEFLVKFR
Ga0105104_106832842	3300009168	Freshwater Sediment	MAQPQFVPSPLKIIERRPRCLKCGARMMMTGTEPMGLGTDRRTFECDQCGHEEELLVKFC
Ga0105241_121670641	3300009174	Corn Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATMMMIGIEPIGLVTDRRTFECDQCGHEEELLVNSFH
Ga0134122_103143893	3300010400	Terrestrial Soil	PSPLKIIERRRCQNCGATLIMIGIEPIGLVTDRRTFECDQCGHEEELLVNSFH*
Ga0134121_116442121	3300010401	Terrestrial Soil	MPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLGTDRPTFECDQCGHEEELLVNSFH
Ga0138513_1000818271	3300011000	Soil	QFIPSPLKIIERRRCQNCGATLIMTGIEPIGLGTDRRTFECDQCGHEEELLVKF*
Ga0105246_101269171	3300011119	Miscanthus Rhizosphere	MLRPQFIPNPLKIIERRRCQNCGATLTMTGIEPIGLGTDRRTFECDQCGHEEELLVNSFH
Ga0157350_10351862	3300012499	Unplanted Soil	MPQPQFIPSPLKIIERRPECQNCGARMMMTGIEPIGLGTDRRTLECDQCGHEEELLVNSFHYGDRP
Ga0157342_10366861	3300012507	Arabidopsis Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLGTDRRTFECDQCGYEEELLVNSFH
Ga0157342_10656061	3300012507	Arabidopsis Rhizosphere	FIPSPLKIIERRRCQNCGATLTMTGIEPIGLGTDRRTFECDQCGHEEELLVNSFHYGDRP
Ga0157338_10344131	3300012515	Arabidopsis Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATMMMTGIEPIGLVTDRRTFECDQCGHEEELLVISFHYGDRA*
Ga0153915_108016062	3300012931	Freshwater Wetlands	MPQSQFIPSPLKIIERRRCQNCGARMMMTGIEPIGLGTDRRTFECDQCGHEEGLLVKF*
Ga0164299_112161912	3300012958	Soil	MPYRQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLGTDRRTFECDQCGHEEELLVNSFH
Ga0164302_105100841	3300012961	Soil	MLRPQFIPNPLKIIERRRCQNCGATLIMIGIEAIGLGTDRRTFACDQCGH
Ga0164304_103005252	3300012986	Soil	MLRPQFIPNPLKIIERRRCQNCGATLIMIGIEAIGLGTDRRTFACDQCGHEEELLVNSFH
Ga0163162_128987512	3300013306	Switchgrass Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLIMIGIEAIGLGTDRRTFECDQCGHEEELLVNSFH
Ga0157372_117780132	3300013307	Corn Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATMMMTGIEPIGLVTDRRTFECDQCGHEEELRVNSFH
Ga0163163_105916001	3300014325	Switchgrass Rhizosphere	IIERRRCQNCGATLIMTGIEPIRLVTDRRTFECDQCGHEEELLVNSFH*
Ga0157377_102446721	3300014745	Miscanthus Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLTMTGIEPIGLGTDRRTFECDQCGHEEELLVN
Ga0163161_116145393	3300017792	Switchgrass Rhizosphere	LKQEEPMPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLDTDRRTFACDQCGHEEELLVKF
Ga0184608_104384741	3300018028	Groundwater Sediment	MPQPQFIPSPLKIIERRRCQNCGATMMMTGIEPMGLGTDRRTFACDQCGHEEELLVKF
Ga0184634_103742331	3300018031	Groundwater Sediment	MPQPQFIPSPLKIIERRRCQNCGATMMMTGIEPMGLGADRRTFACDQCGHEEELLVKF
Ga0184621_100351212	3300018054	Groundwater Sediment	MPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPMGLGTDRRTFECDQCGHEEELFVKF
Ga0184621_102304681	3300018054	Groundwater Sediment	MPQPQFIPTPLKIIERRRCQNCGATMMMTGIEPMGLGTDRRTFACDQCGHEEELLVKF
Ga0184624_100578612	3300018073	Groundwater Sediment	MPQPQFIPSPLKIIERRRCQKCGATMMMTGIEPMGLGTDRRTFACDQCGHEEELLVKF
Ga0184609_105495091	3300018076	Groundwater Sediment	MPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPMGLGTDRRTFECDQCGHEEELLVKF
Ga0184625_101044352	3300018081	Groundwater Sediment	PLKIIERRPRCQNCGTRMMMTGIEPMGLGTDRRTFECDQCGHEEELLVKF
Ga0184625_104594542	3300018081	Groundwater Sediment	LKIIERRRCQNCGATLIMTGIEPIGLGTDRRTFECDQCGHEEELFVKF
Ga0193705_10558872	3300019869	Soil	MPQPQFIPSPLKIIERRRCQNCGATLMMTGIEPMGLGTDRRTFECDQCGHEEELLVKF
Ga0193700_10561901	3300019873	Soil	MPQPQFIPSPLKIIERRRCQNCGATMMMTGIEPMGLGTDRRTFECDQCGHEEELFVKF
Ga0193723_11342052	3300019879	Soil	LKQEEPMPQPQFIPSPLKIIERRRCQNCGATMMMTGIEPMGLGTDRRTFACDQCGHEEELLVKF
Ga0193721_10625101	3300020018	Soil	MPQPQFIPSPLKIIERRRCQNCGATMMMTGIEPMGLGTNRRTFECDQCGHEEELLVKF
Ga0193719_101335501	3300021344	Soil	MPQPQFIPSPLKIIERRRCQNCGARMMMTGIELLGLGTDRRTFECDQCGHEEELLVKF
Ga0222624_14277621	3300021951	Groundwater Sediment	MPQPQFIPSPLKIIERRRCQNCGATMMMTGIEPMGLGTDRRTFECDQCGHEEELLVKF
Ga0222623_100789362	3300022694	Groundwater Sediment	MPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLGTDRRTFECDQCGHEEELFVKF
Ga0222622_112227282	3300022756	Groundwater Sediment	MPQPQFVPSPLKIIERRPRCLNCGARMMMTGTEPMGLGADRRTFECDQCGRDEEFLVKFR
Ga0209483_10544912	3300025862	Arctic Peat Soil	MPQSQSTAVPLLIIERRRCPNCGARMMMTLIEPAGRGTDQRTFECDHEEKLLVTFR
Ga0207710_101082734	3300025900	Switchgrass Rhizosphere	IPSPLKIIERRRCQNCGATLTMTGIEPIGLGTDRRTFECDQCGHEEELLVNSFH
Ga0207699_102299884	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	FIPNPLKIIERRRCQNCGATLIMIGIEAIGLGTDRRTFACDQCGHEEELLVNSF
Ga0207699_106301513	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLIMIGIEAIGLGTDRRTFACDQCGHEE
Ga0207671_109634981	3300025914	Corn Rhizosphere	MPQLQFIPSPLKIIERRRCQNCGATLIMIGIEPIGLVTDRRTFECDQCGHEEELLVNSFH
Ga0207693_101444422	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLDTDRRTFACDQCGHEEELLVNSF
Ga0207644_106210262	3300025931	Switchgrass Rhizosphere	PQFIPNPLKIIERRRCQNCGATLIMIGIEAIGLGTDRRTFACDQCGHEEELLVNSF
Ga0207676_111687371	3300026095	Switchgrass Rhizosphere	SRLKQEEPMPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLVTDRRTFECDQCGHEEELLVNSFH
Ga0207482_1057632	3300027456	Soil	MPQLQFIPSPLKIIERRRCQNCGATLTMTGIEPIGLGTDRRTFECDQCGHEEELLAKF
Ga0207981_10081772	3300027560	Soil	MPQPQFIPSPLKIIERRRCQNCGARMMMTGIEPMGLGTDRRTFECDQCGHEEELLVKF
Ga0209733_11566452	3300027591	Forest Soil	MPQSQFIPTPLRMIERRRCQSCGSAMMLTYIEPMGIGTDQRTFECDQCGHSEEILVKFK
Ga0209422_10029115	3300027629	Forest Soil	MPQSQFTHSPLQIIERRRCQNCGSAMMLTWIESMGLRTDQRTFECDQCGHSEELFVKF
Ga0209593_102574571	3300027743	Freshwater Sediment	MTQPQFIPSPLKIIERRRCQNCGTTMMMSGIEPMGLGTDRRTFECDQYGLEEEML
Ga0209814_103316171	3300027873	Populus Rhizosphere	MAESQFVPSPLKIIERRPRCLNCGARMMMTGTEPTELGTDRRTFACDQCGHEEELLVKFG
Ga0209814_104191971	3300027873	Populus Rhizosphere	MPQPQFIPSPLKIIARRRCQNCGATLTMTGIEPIGLVTDRRTFECDQCGHEEELLVNSFH
Ga0209481_100049849	3300027880	Populus Rhizosphere	MVQPQFIPSPLKIIERRPRCQNCGARMMMSGIEPMGLGTDRRTFACDQCGLEEELLVKF
Ga0207428_101277182	3300027907	Populus Rhizosphere	MPQPQFIPSPLKIIERRPRCQNCGARMMMSGIEPMGLGTDRRTFECDQCGLEEELLVKF
Ga0207428_103785812	3300027907	Populus Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLGTDRRTFECDQCGHEEELLVKF
Ga0207428_111690482	3300027907	Populus Rhizosphere	MLRPQFIPSPLKMIERRRCQNCGATLTMTGIEAIGLGTDRRTFACDQCGHEEE
Ga0209069_101201002	3300027915	Watersheds	MPQPQFIPSSLKIIERRRCQNCGATLIMTGIEPIGLGTDRRTFECDQCGHEEELLVNSFH
Ga0268265_112211291	3300028380	Switchgrass Rhizosphere	MPQPQFIPSPLKIIERRRCQNCGATLIMIGIEPIGLVTARRTFECDQCGHEEELLVNSFH
Ga0307303_101441921	3300028713	Soil	MPQPQFIPSPLKIIERRRCQNCGATLMMTGIEPMGLGTDRRTFACDQCGHEEELLVKF
Ga0307282_103674471	3300028784	Soil	MPQPQFIPSPLKIIERRPRCQNCGARMMMTGIEPMGLGTDRRTFECDQCGREEELLVKF
Ga0307290_103599751	3300028791	Soil	PLKIIERRPRCLNCGARMMMTGTEPMGLGADRRTFECDQCGRDEEFLVKFR
Ga0307302_101946873	3300028814	Soil	MPQPQFIPSPLKIIERRRCQNCGATMMMTGIEPMRLGTDRRTFECDQCGHEEELLVKF
Ga0307308_105659341	3300028884	Soil	KQEEPMPQHQFIPSPLKIIERRRCQNCGATLMMTGIEPMGLGTDRRTFECDQCGHEEELLVKF
Ga0307304_105107161	3300028885	Soil	MPQPQFIPSPLKIIERRRCQNCGATMMMTGIEPMGLGTDRRTFACDQCGHEEELFVKF
Ga0307304_106108171	3300028885	Soil	PVTRSRLKQEEPMPQPQFIPSPLKIIERRRCQNCGATLMMTGIEPMGLGTDRRTFECDQCGHEEELLVKF
Ga0247640_11323741	3300030554	Soil	MPQPQFVPSPLKIIERRRCQNCGATLIMTGIEPVGLGTDRRTFECDQCGHEEALLVKF
Ga0247653_10078271	3300030563	Soil	MPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPVGLGTDRRTFECDQCGHEEELLVKF
Ga0247648_10754131	3300030574	Soil	IPSPLKIIERRRCQNCGATLIMTGIEPVGLGTDRRTFECDQCGHEEELLVKF
Ga0247612_11077891	3300030592	Soil	FIPSTLKIIERRPRCQNCGARMLMTGIEPIGLGTDRRTFECDQCGHEEELLVNSFH
Ga0247650_11558501	3300030601	Soil	PMPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPMGLGTDRRTFECDQCGHEEELLVKF
Ga0247651_100345082	3300030608	Soil	MPQPQFLPSPLKIIERRRCQNCGATLIMTGIEPMGLGTDRRTFACDQCGHEEELLVKF
Ga0075373_114932981	3300030945	Soil	MPQPQFIPSPLKIIERRRCQNCGATMMMTGIEPMGLGTDRRTFECDQCGHEEELLV
Ga0307498_100002872	3300031170	Soil	MPQTQFIPSPLKIIERRRCQNCGARMMMTGIEPMGLGTDRRTYECDQCGHEEELLVKF
Ga0307498_101831981	3300031170	Soil	MPQTQFIPSPLKIIERRRCQNCGATLMMTGIEPMGLGTDRRTFECDQCGHEEELLVKF
Ga0307497_100553791	3300031226	Soil	SRLKQEEPMPQPQFIPSPLKIIERRRCQNCGARMMMTGIEPMGLGTDRRTYECDQCGHEEELLVKF
Ga0170820_164705651	3300031446	Forest Soil	MPQLQFIPSPLKIIERRRCQNCGATMMMTGIEPMGLGTDRRTYECDQCGHEEELLIKF
Ga0170819_135206182	3300031469	Forest Soil	MPQPQFIPSPLKIIERRRCQNCGARMMMTGIELIGLGTDRRTFECDQCGHEEELLVKF
Ga0170819_143308991	3300031469	Forest Soil	RLKQEEPMPQPQFIPSPLKIIERRRCQNCGATMMMTGIEPMGLGTDRRTFACDQCGHEEELLVKF
Ga0310888_108676422	3300031538	Soil	MPQPQFIPSPLKIIERRRCQNCGATMMMTGIEPIGLVTDRRTFECDQCGHEEELLVN
Ga0307468_1008916842	3300031740	Hardwood Forest Soil	MPQPQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLGTDQRTFACDQCGHEEELLVKF
Ga0307468_1012602511	3300031740	Hardwood Forest Soil	MPQLQFIPSPLKIIERRRCQNCGATLIMTGIEPIGLGTDRRTFECDQCGHEEELLVNSFH
Ga0310892_101076322	3300031858	Soil	MPQPQFIPSPLKIIERRRCQNCGATLTMTGIEPIGLGTDRRTFECDQCGHEEELLVNSFH
Ga0310885_105706691	3300031943	Soil	MPQPQFIPSPLKIIERRRCQNCGATMMMTGIEAIGLGTDRRTFECDQCGHEEELLVNSFH
Ga0310903_105681131	3300032000	Soil	MPQLQFIPSPLKIIERRRCQNCGATLTMTGIEPIGLGTDRRTFECDQCGHEEELLVKF
Ga0310896_101457011	3300032211	Soil	MPQPQFIPSPLKIIERRRCQNCGATMMMTGIEPIGLVTDGRTFECDQCGHEEELLVNSFH
Ga0326726_1001487710	3300033433	Peat Soil	MPQPQFIPSPLKIIERRRCQNCGARMMMTGIELIGLGTDRRTFDCDQCGHEEELLVKF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056118

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences