Metagenome / Metatranscriptome Family F055983

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055983
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	45 residues
Representative Sequence	STWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Number of Associated Samples	126
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.72 %
% of genes near scaffold ends (potentially truncated)	97.83 %
% of genes from short scaffolds (< 2000 bps)	93.48 %
Associated GOLD sequencing projects	117
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.377 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.594 % of family members)
Environment Ontology (ENVO)	Unclassified (22.464 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.029 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 30.56% Coil/Unstructured: 69.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF03972	MmgE_PrpD	18.12
PF08450	SGL	10.14
PF12697	Abhydrolase_6	10.14
PF01875	Memo	7.25
PF02617	ClpS	2.90
PF02771	Acyl-CoA_dh_N	2.17
PF04909	Amidohydro_2	2.17
PF01042	Ribonuc_L-PSP	1.45
PF14015	DUF4231	0.72
PF04828	GFA	0.72
PF08448	PAS_4	0.72
PF01909	NTP_transf_2	0.72
PF02826	2-Hacid_dh_C	0.72
PF04191	PEMT	0.72
PF07978	NIPSNAP	0.72
PF10605	3HBOH	0.72
PF01575	MaoC_dehydratas	0.72
PF06983	3-dmu-9_3-mt	0.72
PF01546	Peptidase_M20	0.72
PF13592	HTH_33	0.72
PF13426	PAS_9	0.72
PF00496	SBP_bac_5	0.72
PF02627	CMD	0.72
PF00989	PAS	0.72
PF03401	TctC	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	18.12
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	10.14
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	10.14
COG1355	Predicted class III extradiol dioxygenase, MEMO1 family	General function prediction only [R]	7.25
COG2127	ATP-dependent Clp protease adapter protein ClpS	Posttranslational modification, protein turnover, chaperones [O]	2.90
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	2.17
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.45
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.72
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.72
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.72
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.72
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.72
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.38 %
Unclassified	root	N/A	3.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.38 %
Unclassified	root	N/A	3.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.38 %
Unclassified	root	N/A	3.62 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	78.26 %
Unclassified	root	N/A	3.62 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.72 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.72 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	57.97 %
Unclassified	root	N/A	3.62 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.45 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	30.43 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.52 %
Unclassified	root	N/A	3.62 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.45 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.72 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.72 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.52 %
Unclassified	root	N/A	3.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.17 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.45 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.45 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.72 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.72 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.72 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.72 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.52 %
Unclassified	root	N/A	3.62 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.45 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.45 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.72 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.72 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.72 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.72 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.72 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.52 %
Unclassified	root	N/A	3.62 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.45 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.45 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.72 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.72 %
Methylobacterium nodulans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nodulans	0.72 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.72 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.52 %
Unclassified	root	N/A	3.62 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.45 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.45 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.72 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.72 %
Methylobacterium nodulans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nodulans	0.72 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.72 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10160468	All Organisms → cellular organisms → Bacteria → Proteobacteria	538	Open in IMG/M
3300000955\|JGI1027J12803_109283542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nodulans	1856	Open in IMG/M
3300001661\|JGI12053J15887_10076572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1847	Open in IMG/M
3300001976\|JGI24752J21851_1027495	All Organisms → cellular organisms → Bacteria → Proteobacteria	747	Open in IMG/M
3300003911\|JGI25405J52794_10017632	All Organisms → cellular organisms → Bacteria	1420	Open in IMG/M
3300004157\|Ga0062590_101354711	All Organisms → cellular organisms → Bacteria → Proteobacteria	705	Open in IMG/M
3300005294\|Ga0065705_11050715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	534	Open in IMG/M
3300005332\|Ga0066388_101938959	All Organisms → cellular organisms → Bacteria → Proteobacteria	1053	Open in IMG/M
3300005332\|Ga0066388_103756278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	775	Open in IMG/M
3300005332\|Ga0066388_106324194	All Organisms → cellular organisms → Bacteria → Proteobacteria	597	Open in IMG/M
3300005366\|Ga0070659_101939732	All Organisms → cellular organisms → Bacteria → Proteobacteria	528	Open in IMG/M
3300005440\|Ga0070705_101736163	All Organisms → cellular organisms → Bacteria → Proteobacteria	528	Open in IMG/M
3300005455\|Ga0070663_100055155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2843	Open in IMG/M
3300005471\|Ga0070698_102011662	All Organisms → cellular organisms → Bacteria → Proteobacteria	531	Open in IMG/M
3300005536\|Ga0070697_100725086	All Organisms → cellular organisms → Bacteria → Proteobacteria	878	Open in IMG/M
3300005560\|Ga0066670_10111554	All Organisms → cellular organisms → Bacteria → Proteobacteria	1548	Open in IMG/M
3300005578\|Ga0068854_100727367	All Organisms → cellular organisms → Bacteria → Proteobacteria	859	Open in IMG/M
3300005713\|Ga0066905_100672259	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300005764\|Ga0066903_103088114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	901	Open in IMG/M
3300005764\|Ga0066903_106264891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	621	Open in IMG/M
3300005764\|Ga0066903_106694720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	599	Open in IMG/M
3300005841\|Ga0068863_100270865	All Organisms → cellular organisms → Bacteria → Proteobacteria	1643	Open in IMG/M
3300005981\|Ga0081538_10047236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2643	Open in IMG/M
3300006050\|Ga0075028_100872052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	553	Open in IMG/M
3300006173\|Ga0070716_100839170	All Organisms → cellular organisms → Bacteria → Proteobacteria	714	Open in IMG/M
3300006175\|Ga0070712_101512027	All Organisms → cellular organisms → Bacteria → Proteobacteria	587	Open in IMG/M
3300006177\|Ga0075362_10733565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	517	Open in IMG/M
3300006606\|Ga0074062_12824542	All Organisms → cellular organisms → Bacteria → Proteobacteria	732	Open in IMG/M
3300006806\|Ga0079220_11733305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	547	Open in IMG/M
3300006844\|Ga0075428_101793634	All Organisms → cellular organisms → Bacteria → Proteobacteria	639	Open in IMG/M
3300006845\|Ga0075421_102532080	All Organisms → cellular organisms → Bacteria → Proteobacteria	534	Open in IMG/M
3300006846\|Ga0075430_100285296	All Organisms → cellular organisms → Bacteria → Proteobacteria	1366	Open in IMG/M
3300006854\|Ga0075425_101050202	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300006880\|Ga0075429_100136624	All Organisms → cellular organisms → Bacteria	2145	Open in IMG/M
3300006880\|Ga0075429_101860214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	522	Open in IMG/M
3300006903\|Ga0075426_10511033	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300006904\|Ga0075424_102371950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	557	Open in IMG/M
3300006969\|Ga0075419_10126463	All Organisms → cellular organisms → Bacteria → Proteobacteria	1658	Open in IMG/M
3300007076\|Ga0075435_100490522	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300009088\|Ga0099830_11185483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	634	Open in IMG/M
3300009094\|Ga0111539_10084989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	3720	Open in IMG/M
3300009098\|Ga0105245_10411422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1354	Open in IMG/M
3300009100\|Ga0075418_12579812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300010043\|Ga0126380_11966864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300010046\|Ga0126384_12288875	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300010047\|Ga0126382_10627974	All Organisms → cellular organisms → Bacteria → Proteobacteria	889	Open in IMG/M
3300010047\|Ga0126382_11464149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	626	Open in IMG/M
3300010359\|Ga0126376_11093872	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300010360\|Ga0126372_10460148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1182	Open in IMG/M
3300010361\|Ga0126378_13150741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	525	Open in IMG/M
3300010366\|Ga0126379_11316591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	829	Open in IMG/M
3300010398\|Ga0126383_10681701	All Organisms → cellular organisms → Bacteria → Proteobacteria	1105	Open in IMG/M
3300010398\|Ga0126383_12469870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	604	Open in IMG/M
3300011003\|Ga0138514_100037573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	941	Open in IMG/M
3300011270\|Ga0137391_11204638	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300012189\|Ga0137388_10788332	Not Available	881	Open in IMG/M
3300012205\|Ga0137362_10364845	All Organisms → cellular organisms → Bacteria → Proteobacteria	1251	Open in IMG/M
3300012285\|Ga0137370_10041536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2436	Open in IMG/M
3300012357\|Ga0137384_10087488	All Organisms → cellular organisms → Bacteria → Proteobacteria	2592	Open in IMG/M
3300012357\|Ga0137384_10704125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	820	Open in IMG/M
3300012357\|Ga0137384_11396467	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300012363\|Ga0137390_11177795	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	714	Open in IMG/M
3300012906\|Ga0157295_10216836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	620	Open in IMG/M
3300012911\|Ga0157301_10262549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	613	Open in IMG/M
3300012915\|Ga0157302_10550206	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300012948\|Ga0126375_12094772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	502	Open in IMG/M
3300012971\|Ga0126369_13089349	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300012976\|Ga0134076_10405768	Not Available	608	Open in IMG/M
3300012977\|Ga0134087_10396132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	671	Open in IMG/M
3300012985\|Ga0164308_12215891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	511	Open in IMG/M
3300012989\|Ga0164305_10577249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	899	Open in IMG/M
3300014260\|Ga0075307_1105389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	592	Open in IMG/M
3300014326\|Ga0157380_11331025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	767	Open in IMG/M
3300015371\|Ga0132258_13842547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1022	Open in IMG/M
3300015372\|Ga0132256_103491737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300015373\|Ga0132257_100194744	All Organisms → cellular organisms → Bacteria → Proteobacteria	2398	Open in IMG/M
3300016341\|Ga0182035_11516388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	603	Open in IMG/M
3300016387\|Ga0182040_10433188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1038	Open in IMG/M
3300016404\|Ga0182037_10510415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1009	Open in IMG/M
3300016445\|Ga0182038_11256312	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300017974\|Ga0187777_10494280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	854	Open in IMG/M
3300017997\|Ga0184610_1071473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1061	Open in IMG/M
3300018031\|Ga0184634_10475292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	561	Open in IMG/M
3300018055\|Ga0184616_10229836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	700	Open in IMG/M
3300018429\|Ga0190272_11984701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	615	Open in IMG/M
3300018433\|Ga0066667_10874735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	771	Open in IMG/M
3300018465\|Ga0190269_11147326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300018469\|Ga0190270_13084721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300018481\|Ga0190271_11994365	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300021560\|Ga0126371_10861767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1051	Open in IMG/M
3300022756\|Ga0222622_10737549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	717	Open in IMG/M
3300025906\|Ga0207699_10058226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2310	Open in IMG/M
3300025927\|Ga0207687_10745705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	833	Open in IMG/M
3300025928\|Ga0207700_10148901	All Organisms → cellular organisms → Bacteria	1932	Open in IMG/M
3300025929\|Ga0207664_11334137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	637	Open in IMG/M
3300025932\|Ga0207690_11330622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	600	Open in IMG/M
3300025935\|Ga0207709_11451989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	568	Open in IMG/M
3300025939\|Ga0207665_10356596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1105	Open in IMG/M
3300025961\|Ga0207712_11263609	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300025981\|Ga0207640_10500327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1012	Open in IMG/M
3300026304\|Ga0209240_1053383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1520	Open in IMG/M
3300026494\|Ga0257159_1028289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	930	Open in IMG/M
3300026540\|Ga0209376_1350133	Not Available	558	Open in IMG/M
3300027035\|Ga0207776_1033948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	639	Open in IMG/M
3300027383\|Ga0209213_1060045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	713	Open in IMG/M
3300027880\|Ga0209481_10027021	All Organisms → cellular organisms → Bacteria → Proteobacteria	2576	Open in IMG/M
3300027894\|Ga0209068_10733181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300028536\|Ga0137415_10922438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	683	Open in IMG/M
3300028714\|Ga0307309_10011828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1582	Open in IMG/M
3300028715\|Ga0307313_10062727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1102	Open in IMG/M
3300028768\|Ga0307280_10040941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1421	Open in IMG/M
3300028787\|Ga0307323_10188720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	744	Open in IMG/M
3300028787\|Ga0307323_10207301	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300028799\|Ga0307284_10222737	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300028809\|Ga0247824_10932449	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300028828\|Ga0307312_10288802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1067	Open in IMG/M
3300031640\|Ga0318555_10314639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	847	Open in IMG/M
3300031679\|Ga0318561_10818888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	512	Open in IMG/M
3300031681\|Ga0318572_10694943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300031724\|Ga0318500_10500920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300031771\|Ga0318546_10129243	All Organisms → cellular organisms → Bacteria	1686	Open in IMG/M
3300031777\|Ga0318543_10243005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	802	Open in IMG/M
3300031779\|Ga0318566_10605418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	533	Open in IMG/M
3300031793\|Ga0318548_10277028	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300031796\|Ga0318576_10064332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1618	Open in IMG/M
3300031797\|Ga0318550_10535204	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300031890\|Ga0306925_10480841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1324	Open in IMG/M
3300031890\|Ga0306925_10757489	Not Available	1011	Open in IMG/M
3300031897\|Ga0318520_10429630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	810	Open in IMG/M
3300031910\|Ga0306923_10848776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1004	Open in IMG/M
3300031944\|Ga0310884_10464463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	738	Open in IMG/M
3300031954\|Ga0306926_12719264	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300031959\|Ga0318530_10038233	All Organisms → cellular organisms → Bacteria → Proteobacteria	1758	Open in IMG/M
3300032044\|Ga0318558_10129655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1202	Open in IMG/M
3300032055\|Ga0318575_10426659	Not Available	673	Open in IMG/M
3300032055\|Ga0318575_10489010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	625	Open in IMG/M
3300032179\|Ga0310889_10736503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	517	Open in IMG/M
3300032261\|Ga0306920_100823647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1361	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.54%
Host-Associated	Host-Associated	22.46%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.19%
Plants	Host-Associated → Plants	22.46%
Aquatic	Environmental → Aquatic	4.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.07%
Sediment	Environmental → Aquatic → Sediment	4.35%
Roots	Host-Associated → Plants → Roots	1.45%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.25%
Loam	Environmental → Terrestrial → Soil → Loam	13.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.35%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.62%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.45%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.72%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.72%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.16%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.45%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.45%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.42%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.17%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.72%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.72%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.72%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.72%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.72%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014260	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027035	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 30 (SPAdes)	Environmental	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_101604681	3300000597	Forest Soil	ASVTDIGLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
JGI1027J12803_1092835424	3300000955	Soil	VADVELSTWRLDRDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
JGI12053J15887_100765721	3300001661	Forest Soil	DRDELVLAGPGGAWRFAESDTTTWERIPPSTDPLLLMRQ*
JGI24752J21851_10274951	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	ASVAGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ*
JGI25405J52794_100176321	3300003911	Tabebuia Heterophylla Rhizosphere	GLTTWRLDPDGLLLSGNGGRWRFSESDATSWERIPASTDPMVLMRQ*
Ga0062590_1013547112	3300004157	Soil	GLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRE*
Ga0065705_110507152	3300005294	Switchgrass Rhizosphere	TFNPSTWRLDRDQLILTGRNGSWRFSESDATVWERVPLTVDPMLLVRQ*
Ga0066388_1019389591	3300005332	Tropical Forest Soil	PGCDPSVADVELSTWQLDSEGLLLTGRGGSWRFSESDATTWERIPASADPLVLMRQ*
Ga0066388_1037562781	3300005332	Tropical Forest Soil	WRIEINELVLVGPGGSWRFAESNDTTWERIPPSADPMVLLRQ*
Ga0066388_1063241941	3300005332	Tropical Forest Soil	PGCDPSVADVELSTWQLDSEGLLLTGRGGSWRFSESDATSWERIPASADPLVLMRQ*
Ga0070659_1019397322	3300005366	Corn Rhizosphere	WRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRE*
Ga0070705_1017361631	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GCDASVADVELSTWRLDRDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
Ga0070663_1000551554	3300005455	Corn Rhizosphere	SVAGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ*
Ga0070698_1020116621	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	DVELSTWRLDRDGLLLTGRGGSWRFSESDATTWERIPASADPLVLMRQ*
Ga0070697_1007250862	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	STWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
Ga0066670_101115541	3300005560	Soil	TWQLDSEGLLLTGRGGSWRFSESDATSWERIPASADPLVLMRQ*
Ga0068854_1007273672	3300005578	Corn Rhizosphere	DPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRE*
Ga0066905_1006722591	3300005713	Tropical Forest Soil	DGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0066903_1030881142	3300005764	Tropical Forest Soil	TWRIDSNELLLVGRGSTWRFSESDSTTWERIPPSSDPMVLMRQ*
Ga0066903_1062648911	3300005764	Tropical Forest Soil	LLLTGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0066903_1066947202	3300005764	Tropical Forest Soil	DSDGLLLTGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0068863_1002708653	3300005841	Switchgrass Rhizosphere	LDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ*
Ga0081538_100472361	3300005981	Tabebuia Heterophylla Rhizosphere	DGLLLSGNGGRWRFSESDATSWERIPASTDPMVLMRQ*
Ga0075028_1008720521	3300006050	Watersheds	AAAINGLGLTAWRLEMNDLLLVGRGATWRFSESDATVWERIPPSTDPMLLMRQ*
Ga0070716_1008391701	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	DIGLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0070712_1015120272	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	DSDGLLLTGRGGSWRFSESDATTWERIPASSDPMVLMRQ*
Ga0075362_107335652	3300006177	Populus Endosphere	LGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERVPASTDPLVLMRQ*
Ga0074062_128245422	3300006606	Soil	DIGLSTWRLDSDGLLLSGRSGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0079220_117333051	3300006806	Agricultural Soil	GLLLTGRGGSWRFSESDATIWERIPASADPLVLMRQ*
Ga0075428_1017936341	3300006844	Populus Rhizosphere	IAAFNPSTWRLDRDLLILTGRNGSWRFSESDATVWERVPLSTDPLLLVRQ*
Ga0075421_1025320801	3300006845	Populus Rhizosphere	LLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
Ga0075430_1002852961	3300006846	Populus Rhizosphere	ASVADIELSTWRLDRDGLLLTGRGGSWRFSESDATTWERVPATADPLVLVRQ*
Ga0075425_1010502021	3300006854	Populus Rhizosphere	VELSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
Ga0075429_1001366241	3300006880	Populus Rhizosphere	ELVLTGRAGAWRFSESDATTWERIPPSTDPLVLMRQ*
Ga0075429_1018602141	3300006880	Populus Rhizosphere	TWRLEDNELRLTGRTEAWRFSESDANTWERVPPSAEPMVLMRQ*
Ga0075426_105110331	3300006903	Populus Rhizosphere	TWQLDSEGLLLRGRGGSWRFSESDATTWERIPASADPLVLMRQ*
Ga0075424_1023719501	3300006904	Populus Rhizosphere	LSTWRLDSNELVLSGRNGAWRFSESDTTTWERIPPSTDPIVLMRQ*
Ga0075419_101264634	3300006969	Populus Rhizosphere	VTWRLEGGELVLTGRAGAWRFSESDATTWERIPPSTDPLVLMRQ*
Ga0075435_1004905222	3300007076	Populus Rhizosphere	GLSTWRLDGDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0099830_111854832	3300009088	Vadose Zone Soil	EGGELVLTGRAGAWRFSESDASTWERIPPSTDPLLLMRP*
Ga0111539_100849892	3300009094	Populus Rhizosphere	VKQGCDPSVADVELSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
Ga0105245_104114223	3300009098	Miscanthus Rhizosphere	STWRLADNELLLTGRGGTWRFSESDASIWERVPPSTDPMLLMRQ*
Ga0075418_125798121	3300009100	Populus Rhizosphere	PDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ*
Ga0126380_119668642	3300010043	Tropical Forest Soil	CDASVADIGLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0126384_122888751	3300010046	Tropical Forest Soil	SEGLLLTGRGGSWRFSESDATTWERIPASADPLVLMRQ*
Ga0126382_106279742	3300010047	Tropical Forest Soil	SVADIGLSTWRLDGDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0126382_114641492	3300010047	Tropical Forest Soil	GVGLLTWRLERDELLLVGRSGSWRFSESDATSWERIPPSADPLVLMRQ*
Ga0126376_110938721	3300010359	Tropical Forest Soil	TWRLDSDGLLLTGRGGSWRFSESDATTWERIPATSDPMVLMRQ*
Ga0126372_104601483	3300010360	Tropical Forest Soil	GCDSSVAGIELSTWRLDPDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
Ga0126378_131507411	3300010361	Tropical Forest Soil	FDSSVAGIELSTWRLDPDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
Ga0126379_113165912	3300010366	Tropical Forest Soil	LLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0126383_106817012	3300010398	Tropical Forest Soil	CDPSVADVELSTWQLDSEGLLLTGRAGSWRFSESDATTWERIPASADPLVLMRQ*
Ga0126383_124698702	3300010398	Tropical Forest Soil	RLDSDGLLLTGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0138514_1000375731	3300011003	Soil	IEDNELVVAGRSSAWRFSESDATTWERIPPSTDPLLMMRQ*
Ga0137391_112046381	3300011270	Vadose Zone Soil	LLFSGRTGTWRFAESDATTWERIPPSTDPLLMMRQ*
Ga0137388_107883321	3300012189	Vadose Zone Soil	TWRLQDNELLFSGRTGTWRFAESDATTWGRIPPSTDPLLMMRQ*
Ga0137362_103648451	3300012205	Vadose Zone Soil	ASVADIGLSTWRLDGDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0137370_100415364	3300012285	Vadose Zone Soil	TWRLDSDGLLLTGRGGSWRFSESDATTWERVPASSDPLVLMRQE*
Ga0137384_100874884	3300012357	Vadose Zone Soil	WRLDGDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0137384_107041252	3300012357	Vadose Zone Soil	DSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0137384_113964671	3300012357	Vadose Zone Soil	LVLAGRSGAWRFAESDSTTWERIPPSTDPLRLMRQ*
Ga0137390_111777952	3300012363	Vadose Zone Soil	RLDNNELLFSGRTGTWRFAESDATTWERIPPSTDPLLMMRQ*
Ga0157295_102168362	3300012906	Soil	AGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRE*
Ga0157301_102625491	3300012911	Soil	AGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLRRE*
Ga0157302_105502061	3300012915	Soil	LLLTGRGGTWRFSESDVSTWERVPPSTDPMLLMRQ*
Ga0126375_120947722	3300012948	Tropical Forest Soil	IATWGPSTWRLDRDQIILTGRSGSWRFSESDATVWERVPLSVDPLLLVRQ*
Ga0126369_130893491	3300012971	Tropical Forest Soil	LGFTTWRLDADGLQLSGNGGRWRFSESDATSWERIPASTDPMVLMRQ*
Ga0134076_104057681	3300012976	Grasslands Soil	WRLDSDGLLLTGRGGSWRFSESDATTWERVPASSDPLVLMRQE*
Ga0134087_103961322	3300012977	Grasslands Soil	DTSVADIELSTWRLDSDGLLLTGRGGSWRFSESDATTWERVPASSDPLVLMRQE*
Ga0164308_122158912	3300012985	Soil	SVADIGLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0164305_105772491	3300012989	Soil	VADIGLSTWRLDSDGLLLSGRSVSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0075307_11053891	3300014260	Natural And Restored Wetlands	RIVVKPGCTAEIVGLALATWRLEVNDLLLIGRGGTWRFSESDATVWERIPPSTDPMVLMRQ*
Ga0157380_113310251	3300014326	Switchgrass Rhizosphere	STWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ*
Ga0132258_138425472	3300015371	Arabidopsis Rhizosphere	CDTSIAGLGLATWRLDSNELLLVGRGATWRFSESDATTWERIPPSADPMVLMRQ*
Ga0132256_1034917372	3300015372	Arabidopsis Rhizosphere	VLVGRGGTWRFSESDTTTWERIPPSADPMVLMRQ*
Ga0132257_1001947441	3300015373	Arabidopsis Rhizosphere	SEGLLLRGRGGSWRFSESDATTWERIPASADPLVLMRQ*
Ga0182035_115163882	3300016341	Soil	CDASVADIGLSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0182040_104331881	3300016387	Soil	DASVADIGLSTWRLDGDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0182037_105104151	3300016404	Soil	GLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0182038_112563123	3300016445	Soil	LLLSGRSGTWRFAASDSATWERIPPSTDPLLMMRQ
Ga0187777_104942801	3300017974	Tropical Peatland	WRLQNEELLLSGSTETWRFVESDASTWERVPPSTDPLVLMRQ
Ga0184610_10714731	3300017997	Groundwater Sediment	WRLDPDGLLLSGSGGTWRFSESDPSTWERIPASTDPVVLMRQ
Ga0184634_104752922	3300018031	Groundwater Sediment	VAGLGLSTWRLDPDGLMLSGSGGTWRFSESDPTTWERIPASTDPVVLMRQ
Ga0184616_102298362	3300018055	Groundwater Sediment	CDASVAGLGLSTWRLDPDGLMLSGSGGTWRFSESDPTTWERIPASTDPVVLMRQ
Ga0190272_119847012	3300018429	Soil	RLDRDGLVLSGRGVTWRFSESDATTWERIPPSADPMVLMRQ
Ga0066667_108747352	3300018433	Grasslands Soil	LLLTGRGGSWRFSESDATTWERVPATSDPLVLMRQ
Ga0190269_111473261	3300018465	Soil	TWRLDPDGLLLSGSGGTWRFSERDPTTWERIPASTDPLVLMRQ
Ga0190270_130847212	3300018469	Soil	AGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ
Ga0190271_119943652	3300018481	Soil	LEVNDLLLVGRGGTWRFSEADATVWERIPPSTDPMLLMRQ
Ga0126371_108617672	3300021560	Tropical Forest Soil	ADIGLSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0222622_107375491	3300022756	Groundwater Sediment	PDGLLLSGSGGTWRFSESDPTTWERIPASTDPVVLMRQ
Ga0207699_100582264	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VKQGCDSSVADVELSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0207687_107457051	3300025927	Miscanthus Rhizosphere	GLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRE
Ga0207700_101489011	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	AGGESYKITVKQGCDPSVADVELSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0207664_113341371	3300025929	Agricultural Soil	LLLSGSGGSWRFSESDATSWERIPASTDPLVLMRQ
Ga0207690_113306221	3300025932	Corn Rhizosphere	TWRLDRDQLILTGRNGSWRFSESDATVWERVPLTVDPMLLVRQ
Ga0207709_114519892	3300025935	Miscanthus Rhizosphere	LSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRE
Ga0207665_103565961	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VADIGLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0207712_112636091	3300025961	Switchgrass Rhizosphere	SVADVELSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0207640_105003274	3300025981	Corn Rhizosphere	DASVAGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ
Ga0209240_10533832	3300026304	Grasslands Soil	LLLSGRSGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0257159_10282891	3300026494	Soil	DPSVADVELSTWRLDRDGLLLTGRGGSWRFSESDATTWERIPASADPLVLMRQ
Ga0209376_13501332	3300026540	Soil	WRLDSDGLLLTGRGGSWRFSESDATTWERVPASSDPLVLMRQE
Ga0207776_10339481	3300027035	Tropical Forest Soil	LLLSGSTETWRFVESDASTWERVPPSTDPLVLMRQ
Ga0209213_10600452	3300027383	Forest Soil	AIAGLGLATWRLDSNELVLVGRGGTWRFSESDPKTWERIPPSADPMVLMRQ
Ga0209481_100270211	3300027880	Populus Rhizosphere	VTWRLEGGELVLTGRAGAWRFSESDATTWERIPPSTDPLVLMRQ
Ga0209068_107331811	3300027894	Watersheds	WRLEANELMLIGRAGTWRFSESDASTWERIPPSTDPMLLMK
Ga0137415_109224382	3300028536	Vadose Zone Soil	DGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0307309_100118281	3300028714	Soil	CDASVAGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ
Ga0307313_100627272	3300028715	Soil	GLSTWRLDPDGLMLSGSGGTWRFSESDPTTWERIPASTDPVVLMRQ
Ga0307280_100409411	3300028768	Soil	RLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ
Ga0307323_101887201	3300028787	Soil	GLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPVVLMRQ
Ga0307323_102073011	3300028787	Soil	RLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0307284_102227371	3300028799	Soil	ESYKITVKQGCDPSVADVELSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0247824_109324492	3300028809	Soil	STWRLDRDQLILIGRGGSWRFSESDATVWERFPLSVDPMLLVRQ
Ga0307312_102888021	3300028828	Soil	PGCDASLAGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ
Ga0318555_103146392	3300031640	Soil	LLLFGRNETWRFVESDATTWERVPPSTDPLLLMRQ
Ga0318561_108188881	3300031679	Soil	RLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0318572_106949432	3300031681	Soil	ASVADIGLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0318500_105009201	3300031724	Soil	GLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0318546_101292433	3300031771	Soil	TWRLDNDELLLAGRMTWRFTESDTTTWERISPSTDPMLLMRQ
Ga0318543_102430051	3300031777	Soil	STWRLDSDGLLLSGPGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0318566_106054182	3300031779	Soil	PGCDASVADAELSTWRLDQDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0318548_102770282	3300031793	Soil	WRLDSDGLLLTGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0318576_100643323	3300031796	Soil	CDASVADAELSTWRLDQDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0318550_105352041	3300031797	Soil	ALATWRLDSDELLLSGSTTWRFAESDTTTWERIPPSTDPMLLMRQ
Ga0306925_104808412	3300031890	Soil	SDGLLLTGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0306925_107574891	3300031890	Soil	STWRLQENELLLSGGAGTWRFAESDATTWERIPPSTDPLLMMRQ
Ga0318520_104296302	3300031897	Soil	LSTWRLDRDELLLAGRSGAWRFGESDSTTWERLPPSTDPLVLMRQ
Ga0306923_108487761	3300031910	Soil	CDASVADIGLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0310884_104644631	3300031944	Soil	ASVAGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ
Ga0306926_127192641	3300031954	Soil	LQENELLLSGRAGTWRFAESDATTWERIPPSTDPLLMMKQ
Ga0318530_100382333	3300031959	Soil	DGLLLTGRSGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0318558_101296553	3300032044	Soil	ASVADAELSTWRLDQDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0318575_104266592	3300032055	Soil	QENELLLSGGAGTWRFAESDATTWERIPPSTDPLLMMRQ
Ga0318575_104890101	3300032055	Soil	LSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0310889_107365031	3300032179	Soil	SVAGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ
Ga0306920_1008236471	3300032261	Soil	SDGLLLSGPGGSWRFSESDATTWERIPATSDPLVLMRQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055983

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences