NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F055896

Metagenome / Metatranscriptome Family F055896

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F055896
Family Type Metagenome / Metatranscriptome
Number of Sequences 138
Average Sequence Length 44 residues
Representative Sequence MGMSHNNSRGFTLIAALLLTVLLSGVAVGLLFMVSNEARMGG
Number of Associated Samples 119
Number of Associated Scaffolds 138

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 92.65 %
% of genes near scaffold ends (potentially truncated) 95.65 %
% of genes from short scaffolds (< 2000 bps) 78.99 %
Associated GOLD sequencing projects 111
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (95.652 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(15.217 % of family members)
Environment Ontology (ENVO) Unclassified
(33.333 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(63.768 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 41.43%    β-sheet: 0.00%    Coil/Unstructured: 58.57%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 138 Family Scaffolds
PF07963N_methyl 23.19
PF13544Obsolete Pfam Family 7.25
PF14341PilX_N 3.62
PF07238PilZ 2.17
PF07592DDE_Tnp_ISAZ013 1.45
PF00072Response_reg 0.72
PF00106adh_short 0.72
PF03721UDPG_MGDP_dh_N 0.72
PF13185GAF_2 0.72

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 138 Family Scaffolds
COG0240Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.72
COG0677UDP-N-acetyl-D-mannosaminuronate dehydrogenaseCell wall/membrane/envelope biogenesis [M] 0.72
COG1004UDP-glucose 6-dehydrogenaseCell wall/membrane/envelope biogenesis [M] 0.72
COG12503-hydroxyacyl-CoA dehydrogenaseLipid transport and metabolism [I] 0.72
COG1893Ketopantoate reductaseCoenzyme transport and metabolism [H] 0.72


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms95.65 %
UnclassifiedrootN/A4.35 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000789|JGI1027J11758_12269323All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium532Open in IMG/M
3300000789|JGI1027J11758_12700621All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium570Open in IMG/M
3300000955|JGI1027J12803_100114653All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium559Open in IMG/M
3300001471|JGI12712J15308_10084347All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium805Open in IMG/M
3300001593|JGI12635J15846_10030409All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis4326Open in IMG/M
3300002245|JGIcombinedJ26739_100955931All Organisms → cellular organisms → Bacteria740Open in IMG/M
3300003505|JGIcombinedJ51221_10261960All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium703Open in IMG/M
3300004092|Ga0062389_104024877All Organisms → cellular organisms → Bacteria → Acidobacteria552Open in IMG/M
3300004121|Ga0058882_1660390All Organisms → cellular organisms → Bacteria → Acidobacteria843Open in IMG/M
3300004594|Ga0068976_1174061All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium975Open in IMG/M
3300004631|Ga0058899_10932318All Organisms → cellular organisms → Bacteria → Acidobacteria529Open in IMG/M
3300004633|Ga0066395_10771773All Organisms → cellular organisms → Bacteria → Acidobacteria575Open in IMG/M
3300004971|Ga0072324_1166814All Organisms → cellular organisms → Bacteria666Open in IMG/M
3300005445|Ga0070708_101065493All Organisms → cellular organisms → Bacteria → Acidobacteria757Open in IMG/M
3300005538|Ga0070731_10362299All Organisms → cellular organisms → Bacteria → Acidobacteria963Open in IMG/M
3300005542|Ga0070732_10289494All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium983Open in IMG/M
3300005554|Ga0066661_10863027All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium529Open in IMG/M
3300005607|Ga0070740_10195506All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium850Open in IMG/M
3300005610|Ga0070763_10480511All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium708Open in IMG/M
3300005921|Ga0070766_10124117All Organisms → cellular organisms → Bacteria → Acidobacteria1555Open in IMG/M
3300005950|Ga0066787_10135954All Organisms → cellular organisms → Bacteria → Acidobacteria548Open in IMG/M
3300006028|Ga0070717_10106638All Organisms → cellular organisms → Bacteria → Acidobacteria2386Open in IMG/M
3300006162|Ga0075030_100544914All Organisms → cellular organisms → Bacteria → Acidobacteria922Open in IMG/M
3300006176|Ga0070765_100031533All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4132Open in IMG/M
3300006176|Ga0070765_100122518All Organisms → cellular organisms → Bacteria → Acidobacteria2282Open in IMG/M
3300006755|Ga0079222_10962039All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium727Open in IMG/M
3300009522|Ga0116218_1026451All Organisms → cellular organisms → Bacteria → Acidobacteria2593Open in IMG/M
3300009523|Ga0116221_1004923All Organisms → cellular organisms → Bacteria8395Open in IMG/M
3300009524|Ga0116225_1070819All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1644Open in IMG/M
3300009616|Ga0116111_1171915All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
3300010046|Ga0126384_10140091All Organisms → cellular organisms → Bacteria → Acidobacteria1849Open in IMG/M
3300010046|Ga0126384_11213811All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium696Open in IMG/M
3300010359|Ga0126376_10095525All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2251Open in IMG/M
3300010360|Ga0126372_10392771All Organisms → cellular organisms → Bacteria → Acidobacteria1263Open in IMG/M
3300010376|Ga0126381_100942820All Organisms → cellular organisms → Bacteria → Acidobacteria1244Open in IMG/M
3300010379|Ga0136449_101579902All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium998Open in IMG/M
3300011067|Ga0138594_1066288All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium620Open in IMG/M
3300011084|Ga0138562_1056304All Organisms → cellular organisms → Bacteria → Acidobacteria995Open in IMG/M
3300011110|Ga0138578_1039900All Organisms → cellular organisms → Bacteria → Acidobacteria1239Open in IMG/M
3300012918|Ga0137396_10075114All Organisms → cellular organisms → Bacteria → Acidobacteria2369Open in IMG/M
3300012923|Ga0137359_10199671All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1787Open in IMG/M
3300012971|Ga0126369_10035761All Organisms → cellular organisms → Bacteria → Acidobacteria4128Open in IMG/M
3300012971|Ga0126369_11456054All Organisms → cellular organisms → Bacteria → Acidobacteria775Open in IMG/M
3300013100|Ga0157373_11416675All Organisms → cellular organisms → Bacteria → Acidobacteria529Open in IMG/M
3300014156|Ga0181518_10312301Not Available779Open in IMG/M
3300014158|Ga0181521_10000533All Organisms → cellular organisms → Bacteria46739Open in IMG/M
3300014657|Ga0181522_10020893All Organisms → cellular organisms → Bacteria → Acidobacteria3570Open in IMG/M
3300015241|Ga0137418_10937600All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium632Open in IMG/M
3300016319|Ga0182033_10415617All Organisms → cellular organisms → Bacteria → Acidobacteria1140Open in IMG/M
3300016404|Ga0182037_11985647All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium522Open in IMG/M
3300017935|Ga0187848_10061806All Organisms → cellular organisms → Bacteria → Acidobacteria1773Open in IMG/M
3300017961|Ga0187778_10200657All Organisms → cellular organisms → Bacteria → Acidobacteria1271Open in IMG/M
3300017972|Ga0187781_10027388All Organisms → cellular organisms → Bacteria → Acidobacteria3939Open in IMG/M
3300017972|Ga0187781_11334594All Organisms → cellular organisms → Bacteria → Acidobacteria529Open in IMG/M
3300017975|Ga0187782_10258766All Organisms → cellular organisms → Bacteria → Acidobacteria1309Open in IMG/M
3300017975|Ga0187782_11669239All Organisms → cellular organisms → Bacteria → Acidobacteria504Open in IMG/M
3300017995|Ga0187816_10434222All Organisms → cellular organisms → Bacteria → Acidobacteria586Open in IMG/M
3300018013|Ga0187873_1028219All Organisms → cellular organisms → Bacteria → Acidobacteria2708Open in IMG/M
3300018040|Ga0187862_10458088All Organisms → cellular organisms → Bacteria → Acidobacteria773Open in IMG/M
3300018042|Ga0187871_10101090All Organisms → cellular organisms → Bacteria → Acidobacteria1662Open in IMG/M
3300018085|Ga0187772_11214107All Organisms → cellular organisms → Bacteria → Acidobacteria556Open in IMG/M
3300018085|Ga0187772_11332159Not Available532Open in IMG/M
3300018088|Ga0187771_10774909All Organisms → cellular organisms → Bacteria → Acidobacteria814Open in IMG/M
3300018431|Ga0066655_11356917All Organisms → cellular organisms → Bacteria → Acidobacteria513Open in IMG/M
3300019268|Ga0181514_1575966All Organisms → cellular organisms → Bacteria → Acidobacteria512Open in IMG/M
3300019786|Ga0182025_1044823All Organisms → cellular organisms → Bacteria → Acidobacteria985Open in IMG/M
3300020580|Ga0210403_10484785All Organisms → cellular organisms → Bacteria → Acidobacteria1005Open in IMG/M
3300020580|Ga0210403_11507948All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
3300020581|Ga0210399_11056840All Organisms → cellular organisms → Bacteria → Acidobacteria651Open in IMG/M
3300020583|Ga0210401_10193237All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1893Open in IMG/M
3300020583|Ga0210401_11015088All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium688Open in IMG/M
3300021170|Ga0210400_10014834All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium6171Open in IMG/M
3300021401|Ga0210393_11344415All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium572Open in IMG/M
3300021402|Ga0210385_10069783All Organisms → cellular organisms → Bacteria2391Open in IMG/M
3300021402|Ga0210385_10700411All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium775Open in IMG/M
3300021420|Ga0210394_11425614All Organisms → cellular organisms → Bacteria → Acidobacteria588Open in IMG/M
3300021477|Ga0210398_10326657All Organisms → cellular organisms → Bacteria → Acidobacteria1251Open in IMG/M
3300021477|Ga0210398_11065433All Organisms → cellular organisms → Bacteria → Acidobacteria643Open in IMG/M
3300021479|Ga0210410_10889992All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium777Open in IMG/M
3300022533|Ga0242662_10216065All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium609Open in IMG/M
3300022721|Ga0242666_1035816All Organisms → cellular organisms → Bacteria → Acidobacteria1000Open in IMG/M
3300022722|Ga0242657_1154303All Organisms → cellular organisms → Bacteria → Acidobacteria607Open in IMG/M
3300022732|Ga0224569_114200All Organisms → cellular organisms → Bacteria → Acidobacteria557Open in IMG/M
3300024295|Ga0224556_1052116All Organisms → cellular organisms → Bacteria → Acidobacteria1010Open in IMG/M
3300024331|Ga0247668_1047299All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium876Open in IMG/M
3300025439|Ga0208323_1017918All Organisms → cellular organisms → Bacteria → Acidobacteria1575Open in IMG/M
3300025453|Ga0208455_1055703All Organisms → cellular organisms → Bacteria → Acidobacteria830Open in IMG/M
3300025905|Ga0207685_10772439All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium528Open in IMG/M
3300025929|Ga0207664_10898917All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium795Open in IMG/M
3300025939|Ga0207665_11346665All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium569Open in IMG/M
3300025939|Ga0207665_11500747All Organisms → cellular organisms → Bacteria → Acidobacteria536Open in IMG/M
3300026014|Ga0208776_1021221All Organisms → cellular organisms → Bacteria → Acidobacteria552Open in IMG/M
3300026335|Ga0209804_1330115All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium513Open in IMG/M
3300026551|Ga0209648_10094379All Organisms → cellular organisms → Bacteria → Acidobacteria2466Open in IMG/M
3300027330|Ga0207777_1008120All Organisms → cellular organisms → Bacteria → Acidobacteria2295Open in IMG/M
3300027604|Ga0208324_1159154All Organisms → cellular organisms → Bacteria → Acidobacteria612Open in IMG/M
3300027605|Ga0209329_1110460All Organisms → cellular organisms → Bacteria → Acidobacteria603Open in IMG/M
3300027674|Ga0209118_1116853All Organisms → cellular organisms → Bacteria → Acidobacteria747Open in IMG/M
3300027676|Ga0209333_1099262All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium793Open in IMG/M
3300027745|Ga0209908_10155716All Organisms → cellular organisms → Bacteria → Acidobacteria604Open in IMG/M
3300027842|Ga0209580_10237056All Organisms → cellular organisms → Bacteria → Acidobacteria907Open in IMG/M
3300027855|Ga0209693_10020080All Organisms → cellular organisms → Bacteria → Acidobacteria3216Open in IMG/M
3300027855|Ga0209693_10491401All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium588Open in IMG/M
3300027857|Ga0209166_10464090All Organisms → cellular organisms → Bacteria → Acidobacteria653Open in IMG/M
3300027879|Ga0209169_10540521All Organisms → cellular organisms → Bacteria → Acidobacteria611Open in IMG/M
3300027903|Ga0209488_10385241All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1039Open in IMG/M
3300027908|Ga0209006_10003572All Organisms → cellular organisms → Bacteria14126Open in IMG/M
3300027908|Ga0209006_10648310All Organisms → cellular organisms → Bacteria → Acidobacteria869Open in IMG/M
3300027986|Ga0209168_10039152All Organisms → cellular organisms → Bacteria → Acidobacteria2580Open in IMG/M
3300028906|Ga0308309_10222560All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1566Open in IMG/M
3300029943|Ga0311340_10193959All Organisms → cellular organisms → Bacteria → Acidobacteria2056Open in IMG/M
3300029999|Ga0311339_10057720Not Available5129Open in IMG/M
3300030007|Ga0311338_10131768Not Available3022Open in IMG/M
3300030743|Ga0265461_13482325All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium533Open in IMG/M
3300030863|Ga0265766_1026471All Organisms → cellular organisms → Bacteria → Acidobacteria501Open in IMG/M
3300030906|Ga0302314_10716271All Organisms → cellular organisms → Bacteria → Acidobacteria1018Open in IMG/M
3300030973|Ga0075395_10829985All Organisms → cellular organisms → Bacteria → Acidobacteria651Open in IMG/M
3300030991|Ga0073994_12262343All Organisms → cellular organisms → Bacteria → Acidobacteria599Open in IMG/M
3300031040|Ga0265754_1016403All Organisms → cellular organisms → Bacteria → Acidobacteria650Open in IMG/M
3300031233|Ga0302307_10598567All Organisms → cellular organisms → Bacteria → Acidobacteria555Open in IMG/M
3300031715|Ga0307476_10222227All Organisms → cellular organisms → Bacteria → Acidobacteria1375Open in IMG/M
3300031715|Ga0307476_10890102All Organisms → cellular organisms → Bacteria → Acidobacteria657Open in IMG/M
3300031753|Ga0307477_10046192All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2993Open in IMG/M
3300031941|Ga0310912_11389882All Organisms → cellular organisms → Bacteria → Acidobacteria530Open in IMG/M
3300031962|Ga0307479_11981112All Organisms → cellular organisms → Bacteria → Acidobacteria532Open in IMG/M
3300032160|Ga0311301_11880633All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium707Open in IMG/M
3300032180|Ga0307471_100090982All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2728Open in IMG/M
3300032180|Ga0307471_100596243All Organisms → cellular organisms → Bacteria → Acidobacteria1263Open in IMG/M
3300032180|Ga0307471_100972748All Organisms → cellular organisms → Bacteria → Acidobacteria1016Open in IMG/M
3300032205|Ga0307472_100281107All Organisms → cellular organisms → Bacteria → Acidobacteria1325Open in IMG/M
3300032770|Ga0335085_10488505All Organisms → cellular organisms → Bacteria → Acidobacteria1408Open in IMG/M
3300032783|Ga0335079_10009292All Organisms → cellular organisms → Bacteria11200Open in IMG/M
3300032805|Ga0335078_10214607All Organisms → cellular organisms → Bacteria → Acidobacteria2658Open in IMG/M
3300032805|Ga0335078_10520599All Organisms → cellular organisms → Bacteria → Acidobacteria1522Open in IMG/M
3300033158|Ga0335077_10552496All Organisms → cellular organisms → Bacteria → Acidobacteria1209Open in IMG/M
3300034125|Ga0370484_0135498All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium656Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil15.22%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil7.97%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.97%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland6.52%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.80%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.80%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil5.80%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil4.35%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland3.62%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.62%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.62%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.62%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa3.62%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.90%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog2.17%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland2.17%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.45%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.45%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.45%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.72%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.72%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.72%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.72%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.72%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.72%
Thawing PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost0.72%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.72%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.72%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.72%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.72%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.72%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.72%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000789Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001471Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004121Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004594Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 73 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004631Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300004971Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 41 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005607Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300005950Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300009522Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaGEnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009524Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaGEnvironmentalOpen in IMG/M
3300009616Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011067Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 41 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011084Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 47 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011110Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300014156Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaGEnvironmentalOpen in IMG/M
3300014158Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017935Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017966Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018013Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100EnvironmentalOpen in IMG/M
3300018040Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300019268Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019786Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022533Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022721Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022722Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022732Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1Host-AssociatedOpen in IMG/M
3300024295Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5EnvironmentalOpen in IMG/M
3300024331Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09EnvironmentalOpen in IMG/M
3300025439Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025453Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)EnvironmentalOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026014Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205 (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300027330Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)EnvironmentalOpen in IMG/M
3300027604Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027605Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027676Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027745Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2MEnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030743Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assemblyEnvironmentalOpen in IMG/M
3300030863Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030906Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3EnvironmentalOpen in IMG/M
3300030973Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 Emin (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030991Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031040Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031233Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300034125Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI1027J11758_1226932313300000789SoilMGMSKRSSRGFTLIAALLLLVLLSALAVGVMFLVTNEGH
JGI1027J11758_1270062113300000789SoilMKGRTMGMSHSNSRGFTLIAALLLTVLLSGVAVGLLYMVSNETRMGGNDLEGNL
JGI1027J12803_10011465323300000955SoilMSHKNSRGFTLIAALLLTILLSGVAVGLLYMVSNEARMGGND
JGI12712J15308_1008434713300001471Forest SoilMGQKKNGSDGFTLIAALLIMVLLSGVAAGLLYLVTNESRMSG
JGI12635J15846_1003040913300001593Forest SoilMGPGKNCSQGFTLLAALLILVLLSGVAVGLLFIVTNESRIGGNDLEANM
JGIcombinedJ26739_10095593123300002245Forest SoilMGGRNNSRGFTLIAALLILVLLSGVAAGLMYMVTNETKMGGND
JGIcombinedJ51221_1026196013300003505Forest SoilMGRTSMGQGKNSSQGFTLIAALLILVLLSGAAAGLLFMVSNESRM
Ga0062389_10402487723300004092Bog Forest SoilMKRGQMAFEGRTMGKSKQDSRGFTLIAALLLTVLLSGVAVGLLYMVSN
Ga0058882_166039023300004121Forest SoilMKKSTRDSRGFTLIAALLLTLLLSGLAVGLIYLVTGEQKMGN
Ga0068976_117406123300004594Peatlands SoilMGQGKMGQEKNSSKGFTLIAALLIMVLLSGVAAGLLFMVSN*
Ga0058899_1093231823300004631Forest SoilMGKSTRDSRGFTLIAALLLTLLLSALAVGMLYLVTNEQHMGNNDPE
Ga0066395_1077177323300004633Tropical Forest SoilMGKNQDRSRGFTLIAALLLTILLSGVAVGLLYMVSNEARMGGND
Ga0072324_116681413300004971Peatlands SoilMGTSQQDSRGFTLIAALLLTVLLSGVAVGLLYMVSNEVRMGGND
Ga0070708_10106549323300005445Corn, Switchgrass And Miscanthus RhizosphereMGKSNGNSRGFTLIAALLLTVLLSGIAIGLLYMVSNEVRMGGNDL
Ga0070731_1036229913300005538Surface SoilMRQQKNRAWGFTLIAALLILVLLSGVSVGLLFIVSNEARIGGNDLEA
Ga0070732_1028949433300005542Surface SoilMGQGKNSSPGFTLIAALLILVMLSGVAVGLLFIVTN
Ga0066661_1086302713300005554SoilMDHQNSRGFTLIAALLLTVLLSGVAVGLLYMVSNEARMGGNDL
Ga0070740_1019550623300005607Surface SoilMVKGKNNARGFTLIAALMLTILLSGVAVGLLYMVSNETRMGGNDL
Ga0070763_1048051123300005610SoilMGRTRATQGKTEKGSQGFTLIAALLILVLLSGAAAGLIF
Ga0070766_1012411713300005921SoilMGKSKRDSRGFTLIAALLLTVLLSGIAVGLLYMVSNEE
Ga0066787_1013595423300005950SoilMGQEKNNSRGFTLIAALLILVLLSGVAAGLLYTVTNESKMGG
Ga0070717_1010663843300006028Corn, Switchgrass And Miscanthus RhizosphereMKGRTMGMSHNNSRGFTLIAALMLTILLSGVAVGLLYMVSN
Ga0075030_10054491423300006162WatershedsMGYGKNNARGFTLIAALLILVLLSGVAAGLLYMVTTESKMGGN
Ga0070765_10003153313300006176SoilMSKSQRGSRGFTLIAALLIMILLSAVAVGLVYMVTN
Ga0070765_10012251813300006176SoilMGKSIRDSRGFTLIAALLLTVLLSGLAIGLIFLVTGEQKMGNNDLEGNL
Ga0079222_1096203923300006755Agricultural SoilMAQGKNNSRGFTLIAALLIVVLLSGVAAGLLFMVTNESKMGGND
Ga0116218_102645143300009522Peatlands SoilMAQGKHNSRGFTLIAALLILVLLSGVAAGLLFMVTNETKMSGN
Ga0116221_100492393300009523Peatlands SoilMRMRQDSRGFTLIAALLLTVLLSGVAVGLLYLVTNEQRMGG
Ga0116225_107081913300009524Peatlands SoilMGQGKMGQGKNSSKGLTLIAALLIMVLLSGVAAGLLFMVRNEARMG
Ga0116111_117191523300009616PeatlandMGSKRRRDQRGFTLIAALLLTLLLSAMAVGLLYTVNNEQRMGGNDLESNLA
Ga0126384_1014009113300010046Tropical Forest SoilMVKNRHRSRGFTLIAALLLTVLLSGIAVGLLYMVGNEARMGGND
Ga0126384_1121381113300010046Tropical Forest SoilMAMHSIVGFEGRNMSTSQRNSRGFTLIAALLMTILLSGVAVGLLYMV
Ga0126376_1009552543300010359Tropical Forest SoilMGMFKNSSRGFTLIAALLLLLLLSGVAVGLMFLVNDEGHMSGNEQE
Ga0126372_1039277113300010360Tropical Forest SoilMGMRHKNSRGFTLIAALMLTVLLSGLAVGLLFMVSNEARMGGNDLE
Ga0126381_10094282013300010376Tropical Forest SoilMMVWKLRENMGKNKRDSRGFTLIAALLLMLLLSAVAVGLLYMVNNEQHMGG
Ga0136449_10157990213300010379Peatlands SoilMKSEVGFGGRNMGTSQKDSRGFTLIAALLLTVLLSGVAVGLLYM
Ga0138594_106628823300011067Peatlands SoilMKSEGGFGGRNMGTSQQDSRGFTLIAALLLTVLLSGVAVGLLYMVSNEVRMGGND
Ga0138562_105630423300011084Peatlands SoilMAQGKHNSRGFTLIAALLILVLLSGVAAGLLFMVTNET*
Ga0138578_103990023300011110Peatlands SoilMGQGKMGQGKNSSKGFTLIAALLIMVLLSGVAAGLLFMVTNEARMGGND
Ga0137396_1007511443300012918Vadose Zone SoilMNFGGRGTSMGKSKTSSRGFTLIAALLLLVLLSGVAVGLMFLVNNESRMSGN
Ga0137359_1019967113300012923Vadose Zone SoilMNFGGRGTSMGKSKTSSRGFTLIAALLLLVLLSGVAVGLMFLVNNESRM
Ga0126369_1003576153300012971Tropical Forest SoilMVKNRHRSRGFTLIAALLLTVLLSGIAVGLLYMVGNEARMG
Ga0126369_1115791823300012971Tropical Forest SoilMTNARLSFEGRIMGKNQDRSRGFTLIAALLLTILLSGVAVGLLYMVSNEARMGGND
Ga0126369_1145605423300012971Tropical Forest SoilMGTVKRDSRGFTLIAALLLMVLLSAVAIGLLYMVNNE
Ga0157373_1141667513300013100Corn RhizosphereMGQRNNNSAGFTLIAALLILVLLSGVAAGLIYLVTNESRMSGND
Ga0181518_1031230123300014156BogMGSRKHRSQGFTLIASLLILVLLSGVAAGLLYLVTDEAKMGGNDLEANLAYYG
Ga0181521_1000053313300014158BogMGSRKHRSQGFTLIASLLILVLLSGVAAGLLYLVTDEAKMGGND
Ga0181522_1002089353300014657BogMRKSTRDSRGFTLIAALLLTLLLSAMAVGLLYMVSNEERMGGNDLEG
Ga0137418_1093760023300015241Vadose Zone SoilMGNSKHSSRGFTLIAALLLLVLLSAVAVGLMFLVNNEGRMSGNVQEDNLAY
Ga0182033_1041561723300016319SoilMSHNNSRGFTLIAALLLTVLLSGVAVGLLYMVSNEARMGGN
Ga0182037_1198564723300016404SoilMGKSKGAARGFTLIAALLLLALLSAMSVGMMYLVTNEGHAST
Ga0187848_1006180633300017935PeatlandMGSKRRRDQRGFTLIAALLLTLLLSAMAVGLLYTVNN
Ga0187778_1020065723300017961Tropical PeatlandMGTSQRNSRGFTLIAALLLTVLLSGLAVGLLFMVSNEARMGG
Ga0187776_1089532023300017966Tropical PeatlandMGRERQSLSSGFALVACLLLLVLLSGIAVGLMYMTNTEVRIGGNDL
Ga0187781_1002738813300017972Tropical PeatlandMGRGKNNSQGFTLIASLLILVLLSGVAAGLLYLVTDEARMGGNDL
Ga0187781_1133459423300017972Tropical PeatlandMGTKHKDSRGFTLIAALLITVLLSGVAVGLMYMVSNEARMGGN
Ga0187782_1025876623300017975Tropical PeatlandMRTPMVTGNDRSGGFTLIATLLILVLLSGVAAGLLFLSTNEAKMSGNG
Ga0187782_1166923913300017975Tropical PeatlandMAYSKHSSQQGFTLIAALLIMVLLSGVAAGLLYMVAG
Ga0187816_1043422213300017995Freshwater SedimentMGHGKKNRQGFTLIAALIILVLLSGVAAGILFMVTNESRM
Ga0187873_102821943300018013PeatlandMGSKRRRDQRGFTLIAALLLTLLLSAMAVGLLYTVNNEQRMGGNDLESN
Ga0187862_1045808813300018040PeatlandMGQAKHSSQGFTLIAAILILVMLSGVAVGLFYMVTNETRMGGNDLEANRA
Ga0187871_1010109033300018042PeatlandMEKSKRDSRGFTLIAALLLTLLLSAMAVGLLYLVNNE
Ga0187772_1121410713300018085Tropical PeatlandMGRGKHSSHGFTLIAALLILVLLSGVAAGLLFMVTNEARMGGNDLESNLA
Ga0187772_1133215923300018085Tropical PeatlandMGASKHSSQGFTLIASLLILVLLSGVAAGLLYLVANEAKMGGSDLE
Ga0187771_1077490923300018088Tropical PeatlandMRQGNDSFRGFTLIAALIILVLLSGVAVGLVFLVGNETR
Ga0066655_1135691713300018431Grasslands SoilMRQAKKNGQGFTLIAALSILVLLSGVAAGRRFTVCNVGRMDGNDVVETLDSYG
Ga0181514_157596623300019268PeatlandMRQGKNNSQGFTLIAAILIMVLLSGVAVGLFYMVTNE
Ga0182025_104482313300019786PermafrostMSKHRRDSRGFTLIAALLLTLVMSALAVGLLYLPFVSG
Ga0210403_1048478513300020580SoilMGQGKNSSRGFTLIAALLIMVLLSGVAVGLLFLVTNEFRMGGNDLE
Ga0210403_1150794823300020580SoilMGKRTRDSRGFTLIAALLLTLLLSALAVGLLYMVS
Ga0210399_1105684013300020581SoilMGQKKNLSRGFTLIAALLILVLLSGVAAGLLFIVTSETRM
Ga0210401_1019323733300020583SoilMGHGNKRKFGTQGFTLIAALLIMVLLSGVAAGLLYLVTNESRMSGND
Ga0210401_1101508823300020583SoilMLSLGQETNSMGQGKNSSKGFTLIAALLIMVLLSGVAAGLLFMVSNEAHMGGNDMESNLA
Ga0210400_1001483483300021170SoilMGHGNKRKFGTQGFTLIAALLIMVLLSGVAAGLLYLVTNESRMSGNDLETNLA
Ga0210393_1134441523300021401SoilMAQDKHSSRGFTLIAALLIMVLLSGVAAGLLFMVTNETKM
Ga0210385_1006978343300021402SoilMGKSKRNSRGFTLIAALLLTVLLSAIAVGLLYMVSNEE
Ga0210385_1070041113300021402SoilMAQDKHSSRGFTLIAALLIMVLLSGVAAGLLFMVTNETKMGGNDLENNLAYY
Ga0210394_1142561413300021420SoilMGKSAKNSRGFTLIAALLIMVLLSAVAVGLLFLVSNEGRASGNEQEDNEA
Ga0210398_1032665713300021477SoilMKHRKNSSQGFTLIAALLIMVLLSGVAVGLFYVVTNESRMSGNDLE
Ga0210398_1106543323300021477SoilMAHSKHSSRGFTLIAALLVMVLLSGVAVGLLFMVGSETRMSGNGLENDQAY
Ga0210410_1088999223300021479SoilMRQRKSSSQGFTLIAALLILVLLSGVAAGLLFLVSNESRMGGNDLESNLA
Ga0242662_1021606523300022533SoilMKGRTMGMSHNNSRGFTLIAALMLTILLSGVAVGLLYMVSNEARMGGT
Ga0242666_103581623300022721SoilMGRTRTAQGKKEKGSQGFTLIAALLILVLLSGAAAGLLFMSANQSP
Ga0242657_115430323300022722SoilMAHGKHSSRGFTLIAALLILVLLSGVAVGLLFMVSSEARMSGNGLEN
Ga0224569_11420023300022732RhizosphereMAHSKHSSRGFTLIAALLVMVLLSGVAVGLLFMVSSETRMSGNGL
Ga0224556_105211613300024295SoilMGRTSMGLSMTQGKKEKGSQGFTLIAALLILVMLSGAAAGLLFMV
Ga0247668_104729923300024331SoilMSCEHMEGKAMQKKPNNSKGFTLIAALLLTVLLSGVAVGLLYMVSNEA
Ga0208323_101791833300025439PeatlandMGSKRRRDQRGFTLIAALLLTLLLSAMAVGLLYTVNNE
Ga0208455_105570313300025453PeatlandMGKSKRDSRGFTLIAALLLTLLLSALAVGLLYMVNNE
Ga0207685_1077243923300025905Corn, Switchgrass And Miscanthus RhizosphereMRCEHMEGKAMQKKPNNSKGFTLIAALLLTVLLSGVAVGLLYMVSNEAR
Ga0207664_1089891713300025929Agricultural SoilMRQAKKNGRGFTLIAALIILVLLSGVAAGLMFMVSNEARMGGN
Ga0207665_1134666523300025939Corn, Switchgrass And Miscanthus RhizosphereMNRGMKGKTMGMSHKNSRGFTLIAALLLTILLSGVAVGLLYMVSNEARMGGNDLE
Ga0207665_1150074723300025939Corn, Switchgrass And Miscanthus RhizosphereMAQGKRTQRGFTLIAALIILVLLSGVAAGILFMVTNESRMGGHDLES
Ga0208776_102122123300026014Rice Paddy SoilMRQDKQNNQGFTLIAALIILVLLSGVAAGLLFMVSNESRMGGNDLEN
Ga0209804_133011513300026335SoilMKGRTMGMRHNNSRGFTLIAALMLTILLSGVAVGLLFMVSNEARMGGNDL
Ga0209648_1009437943300026551Grasslands SoilMIAAEDFGGRHMGKSKRDSRGFTLIAALLLTILLSGIAVGLMYMVSNEIRMGGNDLE
Ga0207777_100812013300027330Tropical Forest SoilMGQGKHSSQGFTLIAALLILVLLSGVAAGLLFTVTNES
Ga0208324_115915423300027604Peatlands SoilMAQGKHNSRGFTLIAALLILVLLSGVAAGLLFMVTNE
Ga0209329_111046023300027605Forest SoilMGRSIRDSRGFTLIAALLLTLLLSALAVGMLYLVNNEQHMGNNDLENNLSYYGA
Ga0209118_111685323300027674Forest SoilMGPGKNCSQGFTLLAALLILVLLSGVAVGLLFIVTNESRIGGND
Ga0209333_109926213300027676Forest SoilMAHSKHSSRGFTLIAALLVMVLLSGVAVGLLFMVGSETRMSGNGLE
Ga0209908_1015571613300027745Thawing PermafrostMGKSTRNSRGFTLIAALLLTLLLSGLAIGMIYLVSNEQHMGNND
Ga0209580_1023705623300027842Surface SoilMGQGKNNSRGFTLIAALLILVLLSGVAAGLLFMVT
Ga0209693_1002008013300027855SoilMAHSKHSSRGFTLIAALLVMVLLSGVAVGLLFMVSSETRMS
Ga0209693_1049140113300027855SoilMGRTRATQGKTEKGSQGFTLIAALLILVLLSGAAAGLIFMV
Ga0209166_1046409013300027857Surface SoilMGQKNRARGFTLIAALLILVLLSGVSVGLLFIVTNES
Ga0209169_1054052113300027879SoilMGKSTRDSRGFTLIAALLLTVLLSALAVGLLYMVSNEQRMGGNDLEG
Ga0209488_1038524123300027903Vadose Zone SoilMGQEKNNSQGFTLVAALLILVLLSGVAVGLLFIVTNESRIGGNDLEANMAY
Ga0209006_10003572143300027908Forest SoilMGQGKNNSRGFTLIAALLILVLLSGVAAGLMYLVSNEARMG
Ga0209006_1064831023300027908Forest SoilMRKRRQDSRGFTLIAALLLTLLLSALAVGLLYMVSNE
Ga0209168_1003915243300027986Surface SoilMGQGNCTSRGFTLIAALIILVLLSGVAAGILFMVTNESRMGGHDLETNLAFY
Ga0308309_1022256013300028906SoilMSKSQRGSRGFTLIAALLIMILLSAVAVGLVYMVTNEGKMSAN
Ga0311340_1019395933300029943PalsaMGQGKNNSRGFTLIAALLILVLLSGVAAGLMYLVSNEAR
Ga0311339_1005772013300029999PalsaMRKSTRNSRGFTLIAALLLTLLLSGLAIGLIYLVSNEQHMGNTDL
Ga0311338_1013176813300030007PalsaMRKSTRNSRGFTLIAALLLTLLLSGLAIGLIYLVSNEQHMGNTDLGNNLSYYAAESG
Ga0265461_1348232523300030743SoilMGQGKTRQGKMKNGSQGFTLIAALLILVLLSGAAAGLLFMVTNEARMGGNDLES
Ga0265766_102647123300030863SoilMAHSKHSSRGFTLIAALLVMVLLSGVAVGLLFMVGSETRMSG
Ga0302314_1071627113300030906PalsaMGKSRRDSRGFTLIAALLLTVLLSAIAVGLLYMVSN
Ga0075395_1082998513300030973SoilMGQRKKGKNGTEGFTLIAALLILVLLSGLAAGLLYLVTNESRMSGNDLETNLAYYGA
Ga0073994_1226234323300030991SoilMQMITVGGLKGRNMGKMKRDSRGFTLVAALLLTILLSGIAVGLMYMVSNEV
Ga0265754_101640313300031040SoilMNKRRRDSRGFTLIAALLLTLLLSAMAVGLIYLVNNEQRMG
Ga0302307_1059856713300031233PalsaLAFEEMNMGKSNQDSRGFTLIAALLLTLLLSAMAVGLLYMVTN
Ga0307476_1022222733300031715Hardwood Forest SoilMEPGKNSSQGFTLLAALLILVLLSGVAVGLLFIVTNES
Ga0307476_1089010213300031715Hardwood Forest SoilMGNKTRDSRGFTLIAALLLVLLMSAMAVGLIYLVTNEQRMGN
Ga0307477_1004619253300031753Hardwood Forest SoilMGQERNNSQGFTLVAALLILVLLSGVAAGLLFIVTNESRIGGNDLE
Ga0310912_1138988223300031941SoilMGKNQDRSRGFTLIAALLLTVLLSGVAVGLLYMVSNEARMGGNDLE
Ga0307479_1198111223300031962Hardwood Forest SoilMGQGKNSSKGFTLIAALLILVLLTGVAAGLLFTVGNESRMGGN
Ga0311301_1188063313300032160Peatlands SoilMGTSQRNARGFTLIAALLLTVLLSGLAVGLLYMVSNEARMGG
Ga0307471_10009098253300032180Hardwood Forest SoilMKFGGATSMAKSKTSSRGFTLIAALLLLVLLSGIAVGLMFLVNN
Ga0307471_10059624323300032180Hardwood Forest SoilMNRGMKGRTMGMSHKNSRGFTLIAALLLTILLSGVAVGLLYMVSNEAR
Ga0307471_10097274823300032180Hardwood Forest SoilMVKNRHRSQGFTLIAALLLTVLLSGIAVGLLYLVGNE
Ga0307472_10028110713300032205Hardwood Forest SoilMKGRTMGMSHNNSRGFTLIAALMLTILLSGVAVGLLYMVSNEARMGGND
Ga0335085_1048850513300032770SoilMNHKNSRGFTLIAALLLTVLLSGVAVGLLFMVSNEARMGGND
Ga0335079_10009292133300032783SoilMGMSHNNSRGFTLIAALLLTVLLSGVAVGLLFMVSNEARMGG
Ga0335078_1021460713300032805SoilMDKSKRNERGFTLIAALMMTILLSGVAVGILYLVSSEAGMGRNDLENNLAFY
Ga0335078_1052059933300032805SoilMNYRDSRGFTLIAALLITVLLSGMAVGLLFMVTNEARMGGNDLEGNMAYY
Ga0335077_1055249613300033158SoilMASKRHQSRGFTLIAALLLTVLLSGLAVGLLYMVSNETRMGGNDLEANMSY
Ga0370484_0135498_532_6543300034125Untreated Peat SoilMGQEKNSSQGFTLIAALLILVLLSGVAAGLLFMVTNESHMG


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.