NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F055880

Metagenome / Metatranscriptome Family F055880

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F055880
Family Type Metagenome / Metatranscriptome
Number of Sequences 138
Average Sequence Length 40 residues
Representative Sequence GRTGLDGRPVPVEQDGSAAPALLLLAAQLIEPFQAQR
Number of Associated Samples 113
Number of Associated Scaffolds 138

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 97.83 %
% of genes from short scaffolds (< 2000 bps) 91.30 %
Associated GOLD sequencing projects 110
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (67.391 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(37.681 % of family members)
Environment Ontology (ENVO) Unclassified
(40.580 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(52.899 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 30.77%    β-sheet: 0.00%    Coil/Unstructured: 69.23%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 138 Family Scaffolds
PF12697Abhydrolase_6 5.07
PF00296Bac_luciferase 4.35
PF04199Cyclase 3.62
PF10648Gmad2 3.62
PF13672PP2C_2 2.90
PF00106adh_short 2.90
PF02771Acyl-CoA_dh_N 2.90
PF00583Acetyltransf_1 2.17
PF13483Lactamase_B_3 2.17
PF01641SelR 2.17
PF00999Na_H_Exchanger 2.17
PF12833HTH_18 1.45
PF13411MerR_1 1.45
PF02518HATPase_c 1.45
PF01850PIN 1.45
PF12706Lactamase_B_2 1.45
PF07859Abhydrolase_3 1.45
PF05222AlaDh_PNT_N 1.45
PF01262AlaDh_PNT_C 1.45
PF13561adh_short_C2 1.45
PF00501AMP-binding 1.45
PF00403HMA 0.72
PF07969Amidohydro_3 0.72
PF00144Beta-lactamase 0.72
PF13673Acetyltransf_10 0.72
PF13424TPR_12 0.72
PF13450NAD_binding_8 0.72
PF13520AA_permease_2 0.72
PF01872RibD_C 0.72
PF08241Methyltransf_11 0.72
PF08240ADH_N 0.72
PF00857Isochorismatase 0.72
PF00376MerR 0.72
PF04185Phosphoesterase 0.72
PF02021UPF0102 0.72
PF08443RimK 0.72
PF030614HBT 0.72
PF00561Abhydrolase_1 0.72
PF13472Lipase_GDSL_2 0.72
PF06441EHN 0.72
PF00196GerE 0.72
PF13847Methyltransf_31 0.72
PF03795YCII 0.72
PF02852Pyr_redox_dim 0.72
PF08281Sigma70_r4_2 0.72
PF00996GDI 0.72
PF00155Aminotran_1_2 0.72
PF13377Peripla_BP_3 0.72
PF00903Glyoxalase 0.72
PF07681DoxX 0.72
PF00596Aldolase_II 0.72
PF08922DUF1905 0.72
PF08818DUF1801 0.72
PF13466STAS_2 0.72
PF00392GntR 0.72
PF13006Nterm_IS4 0.72

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 138 Family Scaffolds
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 4.35
COG1878Kynurenine formamidaseAmino acid transport and metabolism [E] 3.62
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 2.90
COG0229Peptide methionine sulfoxide reductase MsrBPosttranslational modification, protein turnover, chaperones [O] 2.17
COG4651Predicted Kef-type K+ transport protein, K+/H+ antiporter domainInorganic ion transport and metabolism [P] 2.17
COG3263NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domainsEnergy production and conversion [C] 2.17
COG3004Na+/H+ antiporter NhaAEnergy production and conversion [C] 2.17
COG0025NhaP-type Na+/H+ or K+/H+ antiporterInorganic ion transport and metabolism [P] 2.17
COG0475Kef-type K+ transport system, membrane component KefBInorganic ion transport and metabolism [P] 2.17
COG0657Acetyl esterase/lipaseLipid transport and metabolism [I] 1.45
COG2350YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHisSecondary metabolites biosynthesis, transport and catabolism [Q] 0.72
COG5649Uncharacterized conserved protein, DUF1801 domainFunction unknown [S] 0.72
COG5646Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)Posttranslational modification, protein turnover, chaperones [O] 0.72
COG4430Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 familyFunction unknown [S] 0.72
COG4270Uncharacterized membrane proteinFunction unknown [S] 0.72
COG3511Phospholipase CCell wall/membrane/envelope biogenesis [M] 0.72
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 0.72
COG2608Copper chaperone CopZInorganic ion transport and metabolism [P] 0.72
COG2367Beta-lactamase class ADefense mechanisms [V] 0.72
COG1335Nicotinamidase-related amidaseCoenzyme transport and metabolism [H] 0.72
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 0.72
COG2217Cation-transporting P-type ATPaseInorganic ion transport and metabolism [P] 0.72
COG05962-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase foldCoenzyme transport and metabolism [H] 0.72
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 0.72
COG0792Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 familyReplication, recombination and repair [L] 0.72
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 0.72
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 0.72
COG1535Isochorismate hydrolaseSecondary metabolites biosynthesis, transport and catabolism [Q] 0.72


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms71.74 %
UnclassifiedrootN/A28.26 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003505|JGIcombinedJ51221_10272776All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii688Open in IMG/M
3300004633|Ga0066395_10642697All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium625Open in IMG/M
3300005332|Ga0066388_102097897All Organisms → cellular organisms → Bacteria → Terrabacteria group1017Open in IMG/M
3300005450|Ga0066682_10584836All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales703Open in IMG/M
3300005541|Ga0070733_10575102Not Available755Open in IMG/M
3300005541|Ga0070733_10977256All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia569Open in IMG/M
3300005591|Ga0070761_10818457Not Available587Open in IMG/M
3300005610|Ga0070763_10674856Not Available604Open in IMG/M
3300005921|Ga0070766_10061279All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2141Open in IMG/M
3300005921|Ga0070766_10585709All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces748Open in IMG/M
3300005921|Ga0070766_11126745All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. KB8542Open in IMG/M
3300006059|Ga0075017_101401986All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia550Open in IMG/M
3300006176|Ga0070765_100711844All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. KB8948Open in IMG/M
3300006176|Ga0070765_101108109All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium748Open in IMG/M
3300006854|Ga0075425_100033095All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5747Open in IMG/M
3300006903|Ga0075426_11433523Not Available525Open in IMG/M
3300009524|Ga0116225_1102839All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1325Open in IMG/M
3300009525|Ga0116220_10560132All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. Ag109_G2-15523Open in IMG/M
3300009683|Ga0116224_10149274All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. E32981126Open in IMG/M
3300009698|Ga0116216_10028443All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3489Open in IMG/M
3300009698|Ga0116216_10548664All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia697Open in IMG/M
3300010048|Ga0126373_11752481All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium685Open in IMG/M
3300010162|Ga0131853_11325926All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300010335|Ga0134063_10555579All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300010361|Ga0126378_10263333All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces1820Open in IMG/M
3300010361|Ga0126378_10592492All Organisms → cellular organisms → Bacteria1223Open in IMG/M
3300010361|Ga0126378_12581183Not Available580Open in IMG/M
3300010376|Ga0126381_103023334All Organisms → cellular organisms → Bacteria → Terrabacteria group668Open in IMG/M
3300010376|Ga0126381_103811454All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia589Open in IMG/M
3300010401|Ga0134121_11376980All Organisms → cellular organisms → Bacteria → Terrabacteria group715Open in IMG/M
3300011035|Ga0138542_136954Not Available545Open in IMG/M
3300012210|Ga0137378_10602093Not Available1009Open in IMG/M
3300012971|Ga0126369_10774134All Organisms → cellular organisms → Bacteria → Terrabacteria group1041Open in IMG/M
3300012971|Ga0126369_13472428All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300014165|Ga0181523_10489700All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria680Open in IMG/M
3300014169|Ga0181531_10377018All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria871Open in IMG/M
3300016270|Ga0182036_10228330Not Available1381Open in IMG/M
3300016294|Ga0182041_10836229All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia824Open in IMG/M
3300016294|Ga0182041_10893900Not Available798Open in IMG/M
3300016319|Ga0182033_10269534Not Available1392Open in IMG/M
3300016357|Ga0182032_11069852Not Available691Open in IMG/M
3300016357|Ga0182032_11632848All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinoallomurus → unclassified Actinoallomurus → Actinoallomurus sp. WRP6H-15561Open in IMG/M
3300016404|Ga0182037_11191358All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Coccoidea → Coccidae → Rhodococcus669Open in IMG/M
3300017926|Ga0187807_1285508All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. Ag109_G2-15546Open in IMG/M
3300017942|Ga0187808_10099875All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus fascians1261Open in IMG/M
3300017942|Ga0187808_10130932All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. E32981100Open in IMG/M
3300017946|Ga0187879_10485276Not Available685Open in IMG/M
3300017947|Ga0187785_10175741All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia916Open in IMG/M
3300017948|Ga0187847_10123687Not Available1418Open in IMG/M
3300017955|Ga0187817_10894526Not Available568Open in IMG/M
3300017961|Ga0187778_10474317All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium828Open in IMG/M
3300017970|Ga0187783_10342620All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1088Open in IMG/M
3300017972|Ga0187781_10067584All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2461Open in IMG/M
3300018001|Ga0187815_10015004All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3371Open in IMG/M
3300018043|Ga0187887_10232325Not Available1094Open in IMG/M
3300018085|Ga0187772_11384066Not Available522Open in IMG/M
3300021088|Ga0210404_10493193All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia691Open in IMG/M
3300021180|Ga0210396_11214533All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii630Open in IMG/M
3300021402|Ga0210385_10756603Not Available744Open in IMG/M
3300021404|Ga0210389_10255394All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1371Open in IMG/M
3300021405|Ga0210387_10028900All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4359Open in IMG/M
3300021433|Ga0210391_10626181All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. KB8844Open in IMG/M
3300021474|Ga0210390_10188621All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1743Open in IMG/M
3300022557|Ga0212123_10606436Not Available690Open in IMG/M
3300022709|Ga0222756_1069897Not Available558Open in IMG/M
3300027096|Ga0208099_1063143All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii523Open in IMG/M
3300027528|Ga0208985_1103875Not Available544Open in IMG/M
3300027545|Ga0209008_1043060All Organisms → cellular organisms → Bacteria1035Open in IMG/M
3300027590|Ga0209116_1026683All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1210Open in IMG/M
3300027609|Ga0209221_1052320All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma profusum1082Open in IMG/M
3300027609|Ga0209221_1088610Not Available802Open in IMG/M
3300027854|Ga0209517_10093627All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Actinacidiphila → Actinacidiphila soli2045Open in IMG/M
3300027857|Ga0209166_10206743All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1054Open in IMG/M
3300027867|Ga0209167_10326986All Organisms → cellular organisms → Bacteria → Terrabacteria group831Open in IMG/M
3300027867|Ga0209167_10787377All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium518Open in IMG/M
3300027882|Ga0209590_10573528Not Available727Open in IMG/M
3300028715|Ga0307313_10048553All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rugosimonospora → Rugosimonospora africana1240Open in IMG/M
3300028773|Ga0302234_10252424Not Available759Open in IMG/M
3300028784|Ga0307282_10250685All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rugosimonospora → Rugosimonospora africana850Open in IMG/M
3300028877|Ga0302235_10439711All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia556Open in IMG/M
3300028906|Ga0308309_10366854All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1230Open in IMG/M
3300030618|Ga0311354_10116586All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2962Open in IMG/M
3300031543|Ga0318516_10288625All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria948Open in IMG/M
3300031543|Ga0318516_10333030All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Moorena876Open in IMG/M
3300031543|Ga0318516_10463871All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia brasiliensis728Open in IMG/M
3300031544|Ga0318534_10596766All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Moorena628Open in IMG/M
3300031572|Ga0318515_10101750All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1507Open in IMG/M
3300031572|Ga0318515_10713557Not Available530Open in IMG/M
3300031573|Ga0310915_11198981Not Available525Open in IMG/M
3300031679|Ga0318561_10264931Not Available938Open in IMG/M
3300031680|Ga0318574_10096420All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1634Open in IMG/M
3300031680|Ga0318574_10096933All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1630Open in IMG/M
3300031708|Ga0310686_107381429All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium1345Open in IMG/M
3300031708|Ga0310686_109427794All Organisms → cellular organisms → Bacteria → Terrabacteria group606Open in IMG/M
3300031708|Ga0310686_114396602All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces specialis702Open in IMG/M
3300031713|Ga0318496_10188492Not Available1132Open in IMG/M
3300031715|Ga0307476_10773496All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis vastitatis710Open in IMG/M
3300031724|Ga0318500_10041073Not Available1917Open in IMG/M
3300031754|Ga0307475_10925010Not Available688Open in IMG/M
3300031764|Ga0318535_10091670All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus fascians1323Open in IMG/M
3300031764|Ga0318535_10488508Not Available547Open in IMG/M
3300031765|Ga0318554_10224439All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1070Open in IMG/M
3300031768|Ga0318509_10378019All Organisms → cellular organisms → Bacteria → Terrabacteria group792Open in IMG/M
3300031771|Ga0318546_10268904All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia1176Open in IMG/M
3300031778|Ga0318498_10006282All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4579Open in IMG/M
3300031779|Ga0318566_10114478All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1328Open in IMG/M
3300031779|Ga0318566_10414698Not Available662Open in IMG/M
3300031781|Ga0318547_10861200All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella panacisegetis565Open in IMG/M
3300031792|Ga0318529_10393021All Organisms → cellular organisms → Bacteria → Terrabacteria group646Open in IMG/M
3300031796|Ga0318576_10039830All Organisms → cellular organisms → Bacteria1994Open in IMG/M
3300031798|Ga0318523_10265583All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia857Open in IMG/M
3300031833|Ga0310917_10814112All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Moorena630Open in IMG/M
3300031859|Ga0318527_10130332All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1047Open in IMG/M
3300031896|Ga0318551_10670846All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia600Open in IMG/M
3300031897|Ga0318520_10286266All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Coccoidea → Coccidae → Rhodococcus990Open in IMG/M
3300031910|Ga0306923_11598922Not Available678Open in IMG/M
3300031942|Ga0310916_10344073All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1266Open in IMG/M
3300031946|Ga0310910_10286262Not Available1294Open in IMG/M
3300031954|Ga0306926_10998054All Organisms → cellular organisms → Bacteria → Terrabacteria group996Open in IMG/M
3300031954|Ga0306926_12795926Not Available527Open in IMG/M
3300031959|Ga0318530_10497138All Organisms → cellular organisms → Bacteria → Terrabacteria group507Open in IMG/M
3300031981|Ga0318531_10153139All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1033Open in IMG/M
3300032008|Ga0318562_10336826Not Available877Open in IMG/M
3300032010|Ga0318569_10566631Not Available529Open in IMG/M
3300032035|Ga0310911_10184952All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1181Open in IMG/M
3300032041|Ga0318549_10384175All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus fascians633Open in IMG/M
3300032059|Ga0318533_10759042All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia712Open in IMG/M
3300032064|Ga0318510_10037758All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Coccoidea → Coccidae → Rhodococcus1655Open in IMG/M
3300032067|Ga0318524_10727280All Organisms → cellular organisms → Bacteria → Terrabacteria group524Open in IMG/M
3300032068|Ga0318553_10038540All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2321Open in IMG/M
3300032076|Ga0306924_11169223All Organisms → cellular organisms → Bacteria834Open in IMG/M
3300032089|Ga0318525_10268474All Organisms → cellular organisms → Bacteria → Terrabacteria group877Open in IMG/M
3300032089|Ga0318525_10601998Not Available561Open in IMG/M
3300032261|Ga0306920_101697784Not Available895Open in IMG/M
3300032770|Ga0335085_11904404All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia606Open in IMG/M
3300032892|Ga0335081_10103612All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4221Open in IMG/M
3300033290|Ga0318519_10052404All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2045Open in IMG/M
3300033290|Ga0318519_10207233Not Available1120Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil37.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.70%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.80%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil5.80%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil5.07%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.07%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment3.62%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.62%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil3.62%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.62%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.17%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.17%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.45%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.45%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.45%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.45%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.45%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.45%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.72%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.72%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.72%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.72%
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut0.72%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300009524Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaGEnvironmentalOpen in IMG/M
3300009525Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaGEnvironmentalOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010162Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)Host-AssociatedOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011035Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 23 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017926Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017947Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MGEnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018001Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5EnvironmentalOpen in IMG/M
3300018043Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300022709Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300027096Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)EnvironmentalOpen in IMG/M
3300027528Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027590Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027609Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028773Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2EnvironmentalOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300028877Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031778Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24EnvironmentalOpen in IMG/M
3300031779Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031792Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031859Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031959Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24EnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032041Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032064Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17EnvironmentalOpen in IMG/M
3300032067Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ51221_1027277613300003505Forest SoilGGAVGRTGLNGRPVPVEQDASSDPVLLLLAEQLIEPFQAAR*
Ga0066395_1064269713300004633Tropical Forest SoilRGQAPGRTGLAGRPVPVEQDDPGPALLLLAGQLGEPFQARGR*
Ga0066388_10209789713300005332Tropical Forest SoilARGDAVGRTGLDGRPVPVEQDDSAGRALLLMAEQLIEPFRAPG*
Ga0066682_1058483613300005450SoilDSVNRTGLDGRPVPVEQEASAGPALLLVAEQLAEPFRARA*
Ga0070733_1057510213300005541Surface SoilTGLDGRPVPVEQEAAARPALLLMAEQLAEPFQVQR*
Ga0070733_1097725613300005541Surface SoilGVGRTGLNGRPVPVEQAESARPAPLLLAEQLIAPFRAQT*
Ga0070761_1081845723300005591SoilRGESLGRTGLDGRPVPVEQDAPATSPLLLMAEQLIEPFQAQR*
Ga0070763_1067485613300005610SoilARADRLGQAGRTGLNGRPVPVEQDSLRPALLLMAGQLIEPFRAPP*
Ga0070766_1006127913300005921SoilRTGLTGRPVPVEQDASSDPVLLLLAEQLIEPFQAAR*
Ga0070766_1058570923300005921SoilVGRTGLDGRPVPVEQSDPAAPPLRLMVGQLIEPFQAQR*
Ga0070766_1112674523300005921SoilRTGLDGRPVPVEQDVAAGPALRLMAGQLIEPFQAQD*
Ga0075017_10140198613300006059WatershedsAVGRTGLDGRPVPVEQDDSAGLVLLLLGEQLIEPFQARG*
Ga0070765_10071184423300006176SoilAVGRTGLDGRPVPVEQDGATAPALLLMAGQLIEPFQAQR*
Ga0070765_10110810923300006176SoilRRDAVGRTGLDGRPVPVEQDAPSRPALLLLANQLAEPFRTQF*
Ga0075425_10003309563300006854Populus RhizosphereMTGGLDGRPVPVEQERAATPGPLLLAEQLIEPFQAQR*
Ga0075426_1143352333300006903Populus RhizosphereTGLDGRPVPVEQEASAGPALLLVAEQLAEPFRARG*
Ga0116225_110283943300009524Peatlands SoilVGRTGLDSRPIPVEQDDPAGPGLLLLAGQLIEPFHGRG*
Ga0116220_1056013223300009525Peatlands SoilGGAVGRTGLDGRPVPVEQDDSAGPALRLLTEQLLEPFRG*
Ga0116224_1014927413300009683Peatlands SoilAVGRTGLDGRPVPVEQDDSAGPALRLLTEQLLEPFRG*
Ga0116216_1002844313300009698Peatlands SoilTGLDGRPVPVEQDDSAGLVLLLLGEQLIEPFQARG*
Ga0116216_1054866423300009698Peatlands SoilVGRTGLDGRPVPVEQDDPAAPPLRLMVGQLIEPFQAQR*
Ga0126373_1175248123300010048Tropical Forest SoilDAVGRTGLDGRPVPVEQDDSAGSVLLLLAEQLAEPFQAQR*
Ga0131853_1132592623300010162Termite GutAVGRTGLDGRPVPVEQDGSARPVLRVVAEQLLEPFQAARG*
Ga0134063_1055557923300010335Grasslands SoilPSRTDSVNRTGLDGRPVPVEQEASAGPALLLVAEQLAEPFRARA*
Ga0126378_1026333313300010361Tropical Forest SoilTGLDGRPVPVEQDDSAGRALLLMAEQLIEPFRAPG*
Ga0126378_1059249213300010361Tropical Forest SoilGRTGLDGRPVPVEQDYPAAAPGPLLLAGQLIEPLQARR*
Ga0126378_1258118313300010361Tropical Forest SoilGRTGLDGRPVPVEQGDSARPALLLLAEQLIEPFQARS*
Ga0126381_10302333413300010376Tropical Forest SoilTGLDGRPVPVEQDSSAGPALLLMAEQLIEPFAAQRG*
Ga0126381_10381145413300010376Tropical Forest SoilLTRTGLDGRPVPVEQDGSARPVLLLMAEQLAEPFQAQR*
Ga0134121_1137698023300010401Terrestrial SoilVGRTGLNGRPVPVEQDHSAGPVLLLLAEQLIEPFGASPG*
Ga0138542_13695413300011035Peatlands SoilGLDSRPIPVEQDDSAGPGLLLLAGQLIEPFHGRG*
Ga0137378_1060209313300012210Vadose Zone SoilSRTGLDGRPVPVEQDDPAAPPLRLMAGQLIEPFQARR*
Ga0126369_1077413423300012971Tropical Forest SoilRDAVAGRTGLDGRPVPVEQDYPAAAPGPLLLAGQLIEPFQARR*
Ga0126369_1347242823300012971Tropical Forest SoilAVGRTGLDGRPVPVEQDDSAGSALLLLAEQLAEPFQAHG*
Ga0181523_1048970033300014165BogRASRVGRTGLDGRPVPVEQGDPAAPPLRLMASQLIEPFQAQR*
Ga0181531_1037701813300014169BogRASRVGRTGLDHRPVPVEQDDPAARPLRLMAHQLIEPFQAQR*
Ga0182036_1022833023300016270SoilDGVGRTGLDGRPVPVEQDAPARLAPLLVAEQLAEPFQAQR
Ga0182041_1083622923300016294SoilRTGLAGRPVPVEQDHRTRPALVLVAEQLLEPFQARR
Ga0182041_1089390023300016294SoilDGRPVPVEQDEAAGPVLLLLAEQLIEPFQAARAGGS
Ga0182033_1026953423300016319SoilGRTGLDGRPVPVEQDAPARLAPLLVAEQLAEPFQAQR
Ga0182032_1106985213300016357SoilGRTGLDGRPVPVEQDNSAAPVLLLLAEQLIEPFQAQH
Ga0182032_1163284823300016357SoilDAAGRTGLDGRPVPVEQDNSAGPALVLLASQLAEPFAARRG
Ga0182037_1119135813300016404SoilSLTRTGLDGRPVPVEQDGSGRPVLLLMAGQLAEPFQAQG
Ga0187807_128550813300017926Freshwater SedimentGRTGLDGRPVPVEQDDSAGPALRLLTEQLLEPFRG
Ga0187808_1009987533300017942Freshwater SedimentVGRTGLDGRPIPVEQDDSTGPALLLIAEQLIEPFQARD
Ga0187808_1013093213300017942Freshwater SedimentGGAVGRTGLDGRPVPVEQDDSAGPALRLLTEQLLEPFRG
Ga0187879_1048527623300017946PeatlandSARASGVGRTGLDGRPVPVEQDNPAAPPLRLMAGQLIEPFQAQR
Ga0187785_1017574113300017947Tropical PeatlandRTGLDGRPVPVEQDAPARRAPVLVARQLIEPFQAQR
Ga0187847_1012368723300017948PeatlandSGVGRTGLDGRPVPVEQDNPAAPPLRLMAGQLIEPFQAQR
Ga0187817_1089452623300017955Freshwater SedimentASIPSRGDAVGRTGLAGRPVPVEQDDSAVPALLLLAEQLIEPFQARG
Ga0187778_1047431713300017961Tropical PeatlandRTGLDGRPVPVEQDGAAGPALRLLAGQLIEPFQARG
Ga0187783_1034262043300017970Tropical PeatlandGRTGLDGRPVPVEQDDSSRFALALLAEQLIEPFQAQR
Ga0187781_1006758413300017972Tropical PeatlandGRTGLEGRPIPVEQDDSAGPVLLLLAGQLMEPFQARD
Ga0187815_1001500433300018001Freshwater SedimentGRTGLDGRPVPVEQDDSAGPALRLLTDQLLEPFRG
Ga0187887_1023232533300018043PeatlandASRVGRTGLDGRPVPVEQDDPAARPLRLMACQLIEPFKAQR
Ga0187772_1138406613300018085Tropical PeatlandLSGRPVPVEQADPARPARPAPLLMAEQLIEPFRART
Ga0210404_1049319313300021088SoilADSVNRTGLDGRPVPVEQEASAGPALLLVAGQLAEPFRARS
Ga0210396_1121453313300021180SoilGGAVGRTGLTGRPVPVEQDASSDPVLLLLAEQLIEPFQAAR
Ga0210385_1075660323300021402SoilAAAGRTGLDGRPVPVEQGDAARPVLLLMAEQLIEPFQAQR
Ga0210389_1025539433300021404SoilGYVRFPARRAPVGRTGLDGRPVPVEQAARPQPALLLLAHQLAEPFRPQP
Ga0210387_1002890013300021405SoilFPARRAPVGRTGLDGRPVPVEQAARPQPALLLLAHQLAEPFRPQP
Ga0210391_1062618113300021433SoilSDAVGRTGLDGRPVPVEQDVAAGPALRLMAGQLIEPFQAQD
Ga0210390_1018862133300021474SoilAAGRTGLDGRPVPVEQGDAARPVLLLMAEQLIEPFQAQR
Ga0212123_1060643613300022557Iron-Sulfur Acid SpringARRDAVGSTGLDGRPVPVEQDDAARPVLLLMAEQLIEPFQAQR
Ga0222756_106989713300022709SoilTGLDGRPVPVEQDDPAAPPLRLMAGQLIEPFQAQR
Ga0208099_106314323300027096Forest SoilRTGLTGRPVPVEQDASSDPVLLLLAEQLIEPFQAAR
Ga0208985_110387523300027528Forest SoilGRTGLDGRPVPVEQDAAAGSALLLMAEQLIEPFQTQR
Ga0209008_104306013300027545Forest SoilAGRPVPVEQDACAASALVLMAGQLIEPFTAARPGSGS
Ga0209116_102668313300027590Forest SoilRTGLEGRPVPVEQDNPAETPLRLMAGQLIEPFQARR
Ga0209221_105232013300027609Forest SoilAVGRTGLDGRPVPVEQDGPARPALLILADQLIEPFQPRG
Ga0209221_108861013300027609Forest SoilRGAAVGRTGLDGRPVPVEQDGSAGPALRLLAEQLLEPFQARG
Ga0209517_1009362713300027854Peatlands SoilRTGLDSRPIPVEQDDPAGPGLLLLAGQLIEPFHGRG
Ga0209166_1020674313300027857Surface SoilPTRRHPVGRTGLDGRPVPVEQDRSSRPALLLLAGQLAEPFRTHP
Ga0209167_1032698623300027867Surface SoilVGRTGLDGRPVPVEQGGAAGPALLLLAGQLIEPFQAQG
Ga0209167_1078737723300027867Surface SoilGQGVGRTGLDGRPVPVEQAESARPAPLLLAEQLIAPFRAQT
Ga0209590_1057352823300027882Vadose Zone SoilSDAVGRTGLDGRPIPVEQDDSAGLGLLLLGEQLIEPFQARG
Ga0307313_1004855333300028715SoilPNRTALDGRPVPVEQEAAAGPALLLLAGQLAEPFRARA
Ga0302234_1025242413300028773PalsaSRPGPTGLDGRPVPVEQDNPAAPPLRLMASQLLEPFQAHRSGG
Ga0307282_1025068513300028784SoilSVNRTGLDGRPVPVEQEAAAGPALLLLAGQLAEPFRARA
Ga0302235_1043971123300028877PalsaRASGAGRTGLDGRPVPVEQGNPAAPPLRLMADQLIEPFQARR
Ga0308309_1036685413300028906SoilVFRSRSDGAGRTGLDGRPIPVEQDDAAAPALLLLAEQLIERFQARG
Ga0311354_1011658613300030618PalsaASRVGRTGLDGRPVPVEQDNPAARPLRLMACQLIEPFQAQR
Ga0318516_1028862513300031543SoilDSLTRTGLDGRPVPVEQDAPARPALLLMAGQLAEPFQAQG
Ga0318516_1033303013300031543SoilGRTGLDGRPVPVEQDDSAGSALLLLAEQLAEPFQAQS
Ga0318516_1046387123300031543SoilPARPGPVGRTGLDGRPVPVEQDGSAAPALLLMAEQLTEPFQTQRS
Ga0318534_1059676623300031544SoilRTGLDGRPIPVEQDDSAGSALLLMAEQLAEPFQAQG
Ga0318515_1010175033300031572SoilVDGLTRTGLDGRPVPVEQDGSARPVMLLMAGQLAEPFRAQD
Ga0318515_1071355723300031572SoilAGAVGRTGLDGRPVPVEQDNSAAPVLLLLAEQLIEPFQAQH
Ga0310915_1119898113300031573SoilVGRTGLDGRPVPVEQDGAARAALLLLAEQLIEPFQAQR
Ga0318561_1026493113300031679SoilPHGAGLDGRPVPVEQDDTAAPVLLLLAEQLIEPFRAQG
Ga0318574_1009642013300031680SoilAVGRTGLAGRPVPVEQDNSAGPALALLAEQLIEPFAAPRS
Ga0318574_1009693313300031680SoilPCRSDSAGRTGLDGRPVPVEQDDSARSVLLLLAEQLIEPFQAQR
Ga0310686_10738142913300031708SoilRVGRTGLDGRPVPVEQGDPAAPPLRLMVGQLIEPFQAPR
Ga0310686_10942779423300031708SoilAGRTGLDGRPVPVEQGASAAPALLLMAEQLIEPFQPQR
Ga0310686_11439660213300031708SoilFPARGARAGRTGLDGRPVPVEQGGQGPALLVMAGQLAEPFQAQR
Ga0318496_1018849223300031713SoilGRAGAVGRTGLDGRPVPVEQDDTAAPVLLLLAEQLIEPFRAQG
Ga0307476_1077349623300031715Hardwood Forest SoilAVGRTGLDGRPVPVEQDGPARPALLLVAEQLIEPFQAQG
Ga0318500_1004107323300031724SoilGVGRTGLDGRPVPVEQDAPARLAPLLVAEQLAEPFQAQR
Ga0307475_1092501023300031754Hardwood Forest SoilGAGRTGLDGRPVPVEQAAPARLAPLLVAEQLAEPFQAQR
Ga0318535_1009167023300031764SoilCRSDSAGRTGLDGRPVPVEQDDSARSVLLLLAEQLIEPFQARR
Ga0318535_1048850823300031764SoilFLRRAGAVGRTGLDGRPVPVEQDNSAAPVLLLLAEQLIEPFQAQH
Ga0318554_1022443913300031765SoilGRTGLDGRPVPVEQDDSAGSALLLLAEQLAEPFHARGIG
Ga0318509_1037801923300031768SoilAGTARGDAVGRTGLAGRPVPVEQDNSAGPALALLAEQLIEPFAAPRS
Ga0318546_1026890413300031771SoilTRTGLDGRPVPVEQDAPARPALLVMAGQLAEPFQAQG
Ga0318498_1000628273300031778SoilGLDGRPVPVEQDNSAGPALVLLAGQLIEPFAAPKS
Ga0318566_1011447833300031779SoilGRTGLDGRPVPIEQGSAAAPGPLLLAGQLIEPFQAQR
Ga0318566_1041469823300031779SoilAGAVGRTGLDGRPVPVEQDDTAAPVLLLLAEQLIEPFRAQG
Ga0318547_1086120023300031781SoilDGRPVPVEQDDSAAPVLLLVAGQLAEPFQAHRPGGYHS
Ga0318529_1039302113300031792SoilLARFPVHADAVGRTGLDGRPIPVEQDDSAGSALLLMAEQLAEPFQAQG
Ga0318576_1003983013300031796SoilRFPARGDAVGRTGLDGRPVPIEQGSAAAPGPLLLAGQLIEPFQAQR
Ga0318523_1026558323300031798SoilSTGTGLDGRPVPVEQDGSAAPALLLLAAQLIEPFQAQR
Ga0310917_1081411213300031833SoilRTGLDGRPVPVEQDDSAGSALLLLAEQLAEPFQAQS
Ga0318527_1013033213300031859SoilGRTGLDGRPVPVEQDGAARAALLLLAEQLIEPFQAQR
Ga0318551_1067084623300031896SoilEGAGRTGLDGRPIPVEQDDSTGPVLLLLAEQLIEPFQARD
Ga0318520_1028626623300031897SoilARFPARGDSLTRTGLDGRPVPVEQDGSGRPVLLLMAGQLAEPFQAQG
Ga0306923_1159892223300031910SoilFTGRSDDVGRTGLEGRPIPVEQDGSAVPALRLLAEQLIEPFQAQR
Ga0310916_1034407313300031942SoilPSRGDAVGRTGLDGRPVPVEQGSAAAPGPLLLAGQLIEPFQAQR
Ga0310910_1028626213300031946SoilTGLDGRPVTVEQDHAAAPGPLLLAEQLIEPFQAQR
Ga0306926_1099805423300031954SoilVGRTGLAGRPVPVEQDNSAGPALALLAEQLIEPFAAPRS
Ga0306926_1279592613300031954SoilRTGLAGRPVPVEQDDRAAPVLLLIAEQLAEPFQAQRPGGYHS
Ga0318530_1049713823300031959SoilVGRTGLDGRPVPVEQDDTAAPVLLLLAEQLIEPFRAQR
Ga0318531_1015313933300031981SoilRGNAVGRTGLDGRPVPVEQGNAATPGPLLLAEQLIEPFQAPR
Ga0318562_1033682613300032008SoilVGRTGLDGRPVPVEQDAPARLAPLLVAEQLAEPFQAQR
Ga0318569_1056663113300032010SoilSSDAVGRTGLNGRPVPVEQNDSAAPGPLLLAGQLIEPFQARR
Ga0310911_1018495213300032035SoilFPARGDAVGRTGLDGRPVPIEQGSAAAPGPLLLAGQLIEPFQAQR
Ga0318549_1038417523300032041SoilRFPCRSDRAGRTGLHGRPVPVEQDDSARPALLLLLEQLIEPFQAHG
Ga0318533_1075904223300032059SoilGRTGLDGRPVPVEQDGSAAPALLLLAAQLIEPFQAQR
Ga0318510_1003775813300032064SoilRGDSLTRTGLDGRPVPVEQDGSGRPVLLLMAGQLAEPFQAQG
Ga0318524_1072728013300032067SoilADAVGRTGLDGRPVPVEQDGSAGSALLVLAEQLAEPFQAQR
Ga0318553_1003854043300032068SoilAMSSSTGRPVPVEQDGSGRPVLLLMAGQLAEPFQAQG
Ga0306924_1116922313300032076SoilGRTGLEGRPVPVEQHHAAAPGPLLLAEQLIEPFQAQR
Ga0318525_1026847423300032089SoilGRPSRPVPVEQDGSAGPALLVMAGQLAEPFAARRS
Ga0318525_1060199823300032089SoilGRTGLDGRPVPVEQNGSAAPGPLLLAGQLIEPFQARG
Ga0306920_10169778423300032261SoilGAVGRTGLDGRPVPVEQDDSAGPALLLLAGQLMEPFQAPR
Ga0335085_1190440413300032770SoilDSLTGTGLDGRLVPVEQDDSARPVLLLMAGQLAEPFQAQR
Ga0335081_1010361213300032892SoilARGDSLTRTGLDGRPVPVEQDAPARPALLLMAGQLAEPFQAQG
Ga0318519_1005240413300033290SoilFPARGDSLTRTGLDGRPVPVEQDAPARPALLLMAGQLAEPFQAQG
Ga0318519_1020723313300033290SoilVQAGAVGRTGLDGRPVPVEQDNSAAPVLLLLAEQLIEPFQAQH


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