Metagenome / Metatranscriptome Family F055879

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055879
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	51 residues
Representative Sequence	MKSRYLYLAAAAGFLAGAVVELLPPHNITAAVLDAVAGAIFLFLGAGAQKQS
Number of Associated Samples	82
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	43.38 %
% of genes near scaffold ends (potentially truncated)	26.09 %
% of genes from short scaffolds (< 2000 bps)	81.16 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.638 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (28.985 % of family members)
Environment Ontology (ENVO)	Unclassified (30.435 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.043 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 53.75% β-sheet: 0.00% Coil/Unstructured: 46.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF00155	Aminotran_1_2	37.68
PF07786	HGSNAT_cat	7.97
PF13365	Trypsin_2	2.90
PF00977	His_biosynth	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG3503	Uncharacterized membrane protein, DUF1624 family	Function unknown [S]	7.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.64 %
Unclassified	root	N/A	25.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.64 %
Unclassified	root	N/A	25.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.64 %
Unclassified	root	N/A	25.36 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	55.07 %
Unclassified	root	N/A	25.36 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	55.07 %
Unclassified	root	N/A	25.36 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	55.07 %
Unclassified	root	N/A	25.36 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	55.07 %
Unclassified	root	N/A	25.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.36 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	13.77 %
Acidicapsa	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa	2.17 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.72 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.36 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	5.07 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	5.07 %
Acidicapsa ligni	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa ligni	2.17 %
Granulicella arctica	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella arctica	0.72 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.36 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	5.07 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	5.07 %
Acidicapsa ligni	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa ligni	2.17 %
Granulicella arctica	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella arctica	0.72 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10147193	All Organisms → cellular organisms → Bacteria	1620	Open in IMG/M
3300001593\|JGI12635J15846_10275202	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300001593\|JGI12635J15846_10379236	Not Available	859	Open in IMG/M
3300001593\|JGI12635J15846_10775489	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa ligni	550	Open in IMG/M
3300002245\|JGIcombinedJ26739_100043009	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4077	Open in IMG/M
3300002245\|JGIcombinedJ26739_100379250	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1294	Open in IMG/M
3300002245\|JGIcombinedJ26739_100614060	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300002245\|JGIcombinedJ26739_101369516	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	600	Open in IMG/M
3300004080\|Ga0062385_10677859	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	662	Open in IMG/M
3300004080\|Ga0062385_11136523	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300004082\|Ga0062384_101296693	Not Available	533	Open in IMG/M
3300004091\|Ga0062387_100769250	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa ligni	714	Open in IMG/M
3300004092\|Ga0062389_100111566	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	2457	Open in IMG/M
3300004092\|Ga0062389_101675888	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	817	Open in IMG/M
3300004092\|Ga0062389_102479464	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300004092\|Ga0062389_102713667	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	660	Open in IMG/M
3300004092\|Ga0062389_103575230	Not Available	583	Open in IMG/M
3300004092\|Ga0062389_103699610	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	574	Open in IMG/M
3300004092\|Ga0062389_103911317	Not Available	559	Open in IMG/M
3300004152\|Ga0062386_101065763	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	670	Open in IMG/M
3300004631\|Ga0058899_10615305	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300004635\|Ga0062388_101591572	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	663	Open in IMG/M
3300005537\|Ga0070730_10095754	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	2060	Open in IMG/M
3300005591\|Ga0070761_10230467	Not Available	1104	Open in IMG/M
3300005602\|Ga0070762_10420995	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	864	Open in IMG/M
3300005602\|Ga0070762_10677188	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300005602\|Ga0070762_11188062	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	527	Open in IMG/M
3300005602\|Ga0070762_11289010	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	507	Open in IMG/M
3300005610\|Ga0070763_10708821	Not Available	590	Open in IMG/M
3300005712\|Ga0070764_10167429	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1216	Open in IMG/M
3300005921\|Ga0070766_10595312	Not Available	742	Open in IMG/M
3300005921\|Ga0070766_10883965	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300006176\|Ga0070765_100750478	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	922	Open in IMG/M
3300009088\|Ga0099830_11351761	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	592	Open in IMG/M
3300009665\|Ga0116135_1009170	All Organisms → cellular organisms → Bacteria	3591	Open in IMG/M
3300011120\|Ga0150983_12322886	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300011270\|Ga0137391_10718969	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	828	Open in IMG/M
3300011271\|Ga0137393_10659600	Not Available	896	Open in IMG/M
3300012357\|Ga0137384_10561218	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	934	Open in IMG/M
3300014169\|Ga0181531_10041876	All Organisms → cellular organisms → Bacteria	2664	Open in IMG/M
3300014201\|Ga0181537_10009362	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7397	Open in IMG/M
3300014201\|Ga0181537_10796243	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	641	Open in IMG/M
3300014489\|Ga0182018_10015291	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	5254	Open in IMG/M
3300014489\|Ga0182018_10043084	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2796	Open in IMG/M
3300014489\|Ga0182018_10120919	All Organisms → cellular organisms → Bacteria	1517	Open in IMG/M
3300014495\|Ga0182015_10007482	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10636	Open in IMG/M
3300014495\|Ga0182015_10022730	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5053	Open in IMG/M
3300014495\|Ga0182015_10043320	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3344	Open in IMG/M
3300014495\|Ga0182015_10052689	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2966	Open in IMG/M
3300014495\|Ga0182015_10243429	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	1189	Open in IMG/M
3300014495\|Ga0182015_10560978	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300014501\|Ga0182024_10192799	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2797	Open in IMG/M
3300014501\|Ga0182024_10690941	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1261	Open in IMG/M
3300014501\|Ga0182024_10995496	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1000	Open in IMG/M
3300014501\|Ga0182024_11615313	Not Available	734	Open in IMG/M
3300017946\|Ga0187879_10523117	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	658	Open in IMG/M
3300018009\|Ga0187884_10310885	Not Available	637	Open in IMG/M
3300018042\|Ga0187871_10317673	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	861	Open in IMG/M
3300019786\|Ga0182025_1354299	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	1087	Open in IMG/M
3300020582\|Ga0210395_10315187	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	1176	Open in IMG/M
3300020583\|Ga0210401_10212376	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1793	Open in IMG/M
3300020583\|Ga0210401_11032605	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	681	Open in IMG/M
3300020583\|Ga0210401_11573168	Not Available	515	Open in IMG/M
3300021181\|Ga0210388_11404217	Not Available	586	Open in IMG/M
3300021401\|Ga0210393_11417342	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella arctica	555	Open in IMG/M
3300021402\|Ga0210385_10284854	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	1222	Open in IMG/M
3300021405\|Ga0210387_10505381	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1074	Open in IMG/M
3300021406\|Ga0210386_10314909	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	1342	Open in IMG/M
3300021406\|Ga0210386_11136178	Not Available	662	Open in IMG/M
3300021407\|Ga0210383_11684305	Not Available	520	Open in IMG/M
3300021420\|Ga0210394_11355969	Not Available	606	Open in IMG/M
3300024288\|Ga0179589_10142662	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1016	Open in IMG/M
3300025612\|Ga0208691_1019201	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	1630	Open in IMG/M
3300025612\|Ga0208691_1036174	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1134	Open in IMG/M
3300026555\|Ga0179593_1243566	All Organisms → cellular organisms → Bacteria	1852	Open in IMG/M
3300027504\|Ga0209114_1102962	Not Available	531	Open in IMG/M
3300027545\|Ga0209008_1011708	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2075	Open in IMG/M
3300027676\|Ga0209333_1159009	Not Available	606	Open in IMG/M
3300027692\|Ga0209530_1035729	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1474	Open in IMG/M
3300027729\|Ga0209248_10076068	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1019	Open in IMG/M
3300027857\|Ga0209166_10111840	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1515	Open in IMG/M
3300027879\|Ga0209169_10147557	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1224	Open in IMG/M
3300027895\|Ga0209624_10829038	Not Available	606	Open in IMG/M
3300027895\|Ga0209624_10852881	Not Available	596	Open in IMG/M
3300027908\|Ga0209006_10051693	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3689	Open in IMG/M
3300027908\|Ga0209006_10181414	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1836	Open in IMG/M
3300027908\|Ga0209006_10367974	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	1216	Open in IMG/M
3300028746\|Ga0302233_10237219	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	693	Open in IMG/M
3300028747\|Ga0302219_10164467	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300028775\|Ga0302231_10362850	Not Available	609	Open in IMG/M
3300028780\|Ga0302225_10111837	Not Available	1332	Open in IMG/M
3300028780\|Ga0302225_10139581	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300028795\|Ga0302227_10215570	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	740	Open in IMG/M
3300028808\|Ga0302228_10354973	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300029882\|Ga0311368_10439568	Not Available	952	Open in IMG/M
3300029910\|Ga0311369_10564584	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	956	Open in IMG/M
3300029943\|Ga0311340_10155910	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2382	Open in IMG/M
3300029943\|Ga0311340_10235575	Not Available	1803	Open in IMG/M
3300029951\|Ga0311371_10959098	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300029999\|Ga0311339_10172277	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2500	Open in IMG/M
3300029999\|Ga0311339_10209006	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2196	Open in IMG/M
3300029999\|Ga0311339_11043013	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	762	Open in IMG/M
3300030007\|Ga0311338_10137529	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2939	Open in IMG/M
3300030007\|Ga0311338_10577616	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1161	Open in IMG/M
3300030007\|Ga0311338_11653650	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa ligni	583	Open in IMG/M
3300030053\|Ga0302177_10521168	Not Available	613	Open in IMG/M
3300030058\|Ga0302179_10297454	Not Available	711	Open in IMG/M
3300030058\|Ga0302179_10529787	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300030399\|Ga0311353_11020365	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300030490\|Ga0302184_10202836	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300030503\|Ga0311370_10106833	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3949	Open in IMG/M
3300030503\|Ga0311370_10179269	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2880	Open in IMG/M
3300030503\|Ga0311370_10643816	Not Available	1259	Open in IMG/M
3300030503\|Ga0311370_10744596	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1141	Open in IMG/M
3300030503\|Ga0311370_10898442	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1004	Open in IMG/M
3300030509\|Ga0302183_10216978	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300030520\|Ga0311372_10808830	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1280	Open in IMG/M
3300031028\|Ga0302180_10316054	Not Available	801	Open in IMG/M
3300031028\|Ga0302180_10421449	Not Available	665	Open in IMG/M
3300031028\|Ga0302180_10599687	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300031234\|Ga0302325_12564944	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	606	Open in IMG/M
3300031234\|Ga0302325_13244679	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300031236\|Ga0302324_101132878	Not Available	1049	Open in IMG/M
3300031525\|Ga0302326_10363070	Not Available	2269	Open in IMG/M
3300031525\|Ga0302326_11514096	Not Available	898	Open in IMG/M
3300031525\|Ga0302326_13155466	Not Available	558	Open in IMG/M
3300031708\|Ga0310686_106442510	All Organisms → cellular organisms → Bacteria	1823	Open in IMG/M
3300031708\|Ga0310686_113337037	Not Available	945	Open in IMG/M
3300031718\|Ga0307474_10553787	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	904	Open in IMG/M
3300031823\|Ga0307478_10888279	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	746	Open in IMG/M
3300032515\|Ga0348332_10880335	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	587	Open in IMG/M
3300032515\|Ga0348332_13027437	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	521	Open in IMG/M
3300032895\|Ga0335074_10035528	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6964	Open in IMG/M
3300034124\|Ga0370483_0026227	All Organisms → cellular organisms → Bacteria	1748	Open in IMG/M
3300034163\|Ga0370515_0015325	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3575	Open in IMG/M
3300034163\|Ga0370515_0195610	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.33%
Aquatic	Environmental → Aquatic	16.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.90%
Peat	Environmental → Terrestrial → Peat	28.99%
Freshwater	Environmental → Aquatic → Freshwater	16.67%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.45%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	28.99%
Loam	Environmental → Terrestrial → Soil → Loam	21.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	18.12%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.04%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.45%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	28.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.74%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	14.49%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.14%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	10.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.90%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.17%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.45%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	28.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	13.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	10.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.70%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.97%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	6.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.35%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	3.62%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.17%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.17%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.45%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.45%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027504	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_101471932	3300001593	Forest Soil	VKSRYLYLAASALFLVLALLQLRHPRNITAAVLNAAAGAIFFFLGATKS*
JGI12635J15846_102752022	3300001593	Forest Soil	MKSRYLYLAAAAGFLAGAVVECLPPHNITAAILDAVAGAIFLFLGAGAQRQS*
JGI12635J15846_103792362	3300001593	Forest Soil	MKSRYLYLAASVAFLVAAVMELRPPRNITAAVLDAAAGFIFLFLGAGPQRRP*
JGI12635J15846_107754891	3300001593	Forest Soil	LYLAAAAGFLAGAVVEFLPPHNITAAVLDAVAGAIFLFLGAGAQKQS*
JGIcombinedJ26739_1000430095	3300002245	Forest Soil	MKSRYLYLAAAIAFLVAAVIEFRAPRNLTAALLDVAAGAIFLFLGAGPQRTKS*
JGIcombinedJ26739_1003792502	3300002245	Forest Soil	MKFRYLYLAAAIAFLVAAVFEFRAPRNFTAALLDAAAGAIFLFLGAGPQRTKS*
JGIcombinedJ26739_1006140602	3300002245	Forest Soil	MKSRYLYLAAALAFLVAAVIEFRAPRKLTPALLDVAAGAIFLFLGAGPQRTKS*
JGIcombinedJ26739_1013695162	3300002245	Forest Soil	MKSRYLYLAAAAGFLAGAVVEFLPPHNITAAILDAVAGAIFLFLGAGKQKQT*
Ga0062385_106778592	3300004080	Bog Forest Soil	MKSRYLYLAAAAGFLAGAVMECLPPHNITAAVLDAVAGAIFLFLGAGAQRQS*
Ga0062385_111365231	3300004080	Bog Forest Soil	MKSRYLYLAASVAFLVGAAVEAPRSVTAAVLDGIAGAIFLFLGVGP
Ga0062384_1012966932	3300004082	Bog Forest Soil	ASVEQMKSRYLYLAAAAGFFAGAVVESLPPHNITAAVLDAVAGVIFLFLGAGAQRQS*
Ga0062387_1007692502	3300004091	Bog Forest Soil	IASVEQMKSRYLYLAAAAGFLAGAVMECLPPHNITAAVLDAVAGAIFLFLGAGAQRQS*
Ga0062389_1001115662	3300004092	Bog Forest Soil	MKSRYLYLAASVAFLVAVVMELRPPRNITAAALDAAAGLIFLFLGAGPKRRA*
Ga0062389_1016758882	3300004092	Bog Forest Soil	MKSRYLYLAAAAGFLAGTVVEFLPPRSITAAVLDALAAAIFLYLGVAAKP*
Ga0062389_1024794641	3300004092	Bog Forest Soil	MKSRYLYLAAAAGFLAGTVVEFLPPHNITAAVLDAVAGAIFLF
Ga0062389_1027136672	3300004092	Bog Forest Soil	MKSRYLYLAASIAFLVAAVVEVLPPRNLTAAILDAAAGAIFLFLGAGPQKN*
Ga0062389_1035752301	3300004092	Bog Forest Soil	MKSRYLYLAASVAFLVGAAVEAPRSVTAAVLDGIAGAIFLFLGVGPQKRT*
Ga0062389_1036996102	3300004092	Bog Forest Soil	MKSRYLYLAASVAFLVAAVMELRPPRSITAAVLDAAAGFIFLFLGVGPQRRA*
Ga0062389_1039113171	3300004092	Bog Forest Soil	RLLRLEQMKSRYLYLAAAAVFLVGAVVESFPPHKLMAAILDAAAGAIFLFLGLSARKPS*
Ga0062386_1010657632	3300004152	Bog Forest Soil	MKSRYLYLAASIAFLVAAVVEFRAPRNLTAALLDAAAGAIFLFLGAGPQRRN*
Ga0058899_106153052	3300004631	Forest Soil	MKSRYLYLAASVAFLVAAVMQLRPPRNITAAVLDAAAGFIFLFLGAGPQRRA*
Ga0062388_1015915722	3300004635	Bog Forest Soil	MKSRYLYLAAAAVFLIGAVVESFPPHKLMAAILDAAARAIFLFLGLSARKPS*
Ga0070730_100957542	3300005537	Surface Soil	MKSRYLYLAAFLAFLVAAVIEVRPPRNITAALLDAATALIFLFLAVGPQRRA*
Ga0070761_102304671	3300005591	Soil	VKSRYLYLAASALFLVLAVLQLRHPRNITAAVLDAAAGAIFIFLGAAKS*
Ga0070762_104209952	3300005602	Soil	MKSRYLYLAAAAGFLAGAVVESLPPHNITAAVLDAVAGAIFLFLGAGAQKQS*
Ga0070762_106771882	3300005602	Soil	GMKSRYLFLAASVPFLILAVVEVRHNVYAAALNAIAGAIFLFLGVGPQRRT*
Ga0070762_111880622	3300005602	Soil	MKSRYLYLALSIAFLVAAVVELRSPRNITAAVLDAAAGAIFLFLGAGPQRRA*
Ga0070762_112890102	3300005602	Soil	MKSRYLYLAASVAFLVGAVLEAPRSVTAAVLDGIAGAIFLFLGVGPQKRV*
Ga0070763_107088211	3300005610	Soil	SANVLAMKSRYLYLAASALFLVLAVLQLRHPRNITAAVLDAAAGAIFLFLGATKS*
Ga0070764_101674292	3300005712	Soil	MKSRYLYLAASVAFLVGAALEAPRSVTAAVLDGIAGAIFLFLGVGPQKRV*
Ga0070766_105953121	3300005921	Soil	VKSRYLYLAASALFLVLAALQLRHPRNITAAVLDAAAGAIFIFLGAAKS*
Ga0070766_108839652	3300005921	Soil	MKSRYLYLAASVPFLILAIVELRHNVSAAVLNAIAGAIFLFLGVGPQRRK*
Ga0070765_1007504782	3300006176	Soil	MKSRYLYLAAAAGFLAGAVVECLPPHNITAAVLDAVAGAIFLFLGAGAQRQS*
Ga0099830_113517612	3300009088	Vadose Zone Soil	MKSRYLYLAAFLAFLVAAVIELRPPRNITAALLDAAAGLIFLFLGTGPKRRA*
Ga0116135_10091703	3300009665	Peatland	MKFRYLYLAAAIAFLVAAVIEFRAPRNLTAALLDAAAGIIFLFLGAGPQRTKS*
Ga0150983_123228862	3300011120	Forest Soil	MKSRYLYLAAAAGILAGAVVESLPPHNITAAVLDAVAGAIFLFLGAGAQRQS*
Ga0137391_107189692	3300011270	Vadose Zone Soil	MKSRYLYLAAFLAFLVAAVIELRPPRNITAALLDAAAGLIFLFLGAGPKRRA*
Ga0137393_106596001	3300011271	Vadose Zone Soil	LAAFLAFLVAAVIELRPPRNITAALLDAAAGLIFLFLGAGPKRRA*
Ga0137384_105612182	3300012357	Vadose Zone Soil	MSRYLYLAAFLAFLVAAVIELRPPRNITAALLDAAAGLIFLFLGAGPKRRA*
Ga0181531_100418763	3300014169	Bog	MKSRILYLIAAAGFLAGAVLEFLPPRNAYAGGLDVVAGAIFLLLGFIAKP*
Ga0181537_100093624	3300014201	Bog	MKSRILYLIAAAGFLVGAVLEFLPPRNAYAGGLDVVAGAIFLLLGFIAKP*
Ga0181537_107962432	3300014201	Bog	MKSRYLYLAAAAGFLAGAVVECLPPHNITAAVLDAVAGAIFLFLGAGAQRPS*
Ga0182018_100152916	3300014489	Palsa	MKSKYLYLAAAVAFLVGAVVEFSRPRNITAAVLDAIAGAIFLFLGVGPQRRS*
Ga0182018_100430842	3300014489	Palsa	MKSRYLYLAASVAFLVGAVVEFSRPHNITAAVLDALAGAIFLFLGVGPKRRA*
Ga0182018_101209191	3300014489	Palsa	MKSRYLYLAASVAFLVGAAVEFLPPRGLTAAILDAVAGAIFLFLGVSPQKMRIKPPE*
Ga0182015_100074822	3300014495	Palsa	MKSRYLYLAASVAFLVGAVVEFRSPRALTAAILDAIAGVVFLYLAWSPQKMRVKPPE*
Ga0182015_100227304	3300014495	Palsa	VKSRYLYLAASALFLVLAVLQLRHPRNLTAAVLNAAAGAIFFFLGATKS*
Ga0182015_100433202	3300014495	Palsa	MKSRYLYLAASVAFLVGAVMEFLPPRGLTAAILDAVAGAIFLFLGVSPQKMRIKPPE*
Ga0182015_100526892	3300014495	Palsa	MKSRYLYLAASVAFLVVAILKLLPPRNLTAAALNAVTGCIFLFLGAGPRRPM*
Ga0182015_102434292	3300014495	Palsa	MKSRYLYLVASVPFLILAVVEFRHNVYAAVLNAIAGALFLFLGVGPQRRT*
Ga0182015_105609782	3300014495	Palsa	MKSRYLYLAAAAGFLAGAVMECLPPHNITAAVLDAVAGAIFLFLGS
Ga0182024_101927991	3300014501	Permafrost	MKSKYLYLAAAVAFLVGAVVEFSRPHNITAAVLDALAGAIFLFLGVGPKRRA*
Ga0182024_106909412	3300014501	Permafrost	MKSRYLYLAAAAGFLAGAVVEFLPPHNITAAILDAVAAAIFLFLGAGAQKQS*
Ga0182024_109954962	3300014501	Permafrost	MKSKYLYLAAAVAFLVGAVVEFSRPHNITAAALDAIAGAIFLFLGLGPQRRA*
Ga0182024_116153131	3300014501	Permafrost	PLNEMKSRHLYLAASVPFLILAVVEFRHNVYAAVLNAIAGALFLFLGVGPQRRT*
Ga0187879_105231172	3300017946	Peatland	MKSRYLYLAAAAGFLAGAVVECLPPHNITAAVLDAVAGAIFLFLGAGAQKQS
Ga0187884_103108852	3300018009	Peatland	MKSRYLYLAAAAGFLAGAVMECLPPHNITAAVLDAVAGAIFLFLGLGAQKQS
Ga0187871_103176732	3300018042	Peatland	MKSRYLYLAAAAGFLAGAVMEFLPPHNITAAVLDAVAGVIFLFLGSGAQKQS
Ga0182025_13542992	3300019786	Permafrost	MKSRYLYLAAAAGFLAGAVVEFLPPHNITAAILDAVAAAIFLFLGAGAQKQS
Ga0210395_103151872	3300020582	Soil	MKSRYLYLAAAAGFLAGAVVECLPPHNITAAILDAVAGAIFLFLGAGAQRQS
Ga0210401_102123762	3300020583	Soil	MKSRYLYLALSIAFLVAAVVELRSPRNITAAVLDAAAGAIFLFLGAGPQRRA
Ga0210401_110326052	3300020583	Soil	MKSRYLYLAAAAGFLAGAVVECLPPHNITAAVLDAVAGAIFLFLGAGAQRQS
Ga0210401_115731682	3300020583	Soil	HIASVEQMKSRYLYLAAGAGFLAGAVVESLPPHNITAAVLDAVAGAIFLFLGAGAQKQS
Ga0210388_114042171	3300021181	Soil	MKSRYLYLAASVAFLVVAILKLLPPRNLTAAALNAVTGCIFLFLGAGPRRPM
Ga0210393_114173422	3300021401	Soil	MKSRYLYLAASIGFLVAAVMQLRPPRNITAAVLDAAAGFIFLFLGAGPQRRA
Ga0210385_102848542	3300021402	Soil	MKSRYLYLAAAAGFLAGAVVEFLPPHNITAAVLDAVAGAIFLFLGAGARKQS
Ga0210387_105053812	3300021405	Soil	MKFRYLYLAAAIAFLGAAVVEFRAPRNLTAALLDAAAGAIFLFLGAGPQRTKS
Ga0210386_103149092	3300021406	Soil	VKSRYLYLAASALFLVLAVLQLRHPRNITAAVLDAAAGAIFLFLGATKS
Ga0210386_111361781	3300021406	Soil	HGLLTLDVMKSRYLYLAAALAFLVAAVFELRAPRNLTAALIDAAAGAIFLFLGAGPQRTK
Ga0210383_116843051	3300021407	Soil	LGMKSRYLYLAASVAFLVAAVMELRPPRNITAAVLDAAAGFIFLFLGAGPQRRA
Ga0210394_113559691	3300021420	Soil	MKSRYLYLAAAAGFLAGAVVEFLPPHNITAAILDAVAGAIFLFLGTGAQKQS
Ga0179589_101426622	3300024288	Vadose Zone Soil	MKSRYLYLAAFLAFLVAAVIELRPPRNITAALLDAAAGLIFLFLGAGPKRRA
Ga0208691_10192012	3300025612	Peatland	MKFRYLYLAAAIAFLVAAVIEFRAPRNLTAALLDAAAGIIFLFLGAGPQRTKS
Ga0208691_10361742	3300025612	Peatland	MKSRYLYLAAAAGFLAGAVVEFLPPHNITAAILDAVAGAIFLFLGAGTRKKS
Ga0179593_12435663	3300026555	Vadose Zone Soil	MKSRYLYLAAFLAFLVAAVIELRPPRNITAALLDAAAGLIFLFLGAGPKDVHVTRSL
Ga0209114_11029621	3300027504	Forest Soil	VAAAIELRPPHNITAALLDAAAGLIFLFLGTSPKRRA
Ga0209008_10117082	3300027545	Forest Soil	MKSRYLYLAAAIAFLVAAVIEFRAPRNLTAALLDVAAGAIFLFLGAGPQRTKS
Ga0209333_11590091	3300027676	Forest Soil	AMKSRYLYLAASVAFLVVAILKLLPPRNLTAAALNAVTGCIFLFLGAGPRRPM
Ga0209530_10357292	3300027692	Forest Soil	MKSRYLYLAAAAGFLAGTVVESLPPHNITAAVLDAVAGAIFLFLGAGAQKQS
Ga0209248_100760682	3300027729	Bog Forest Soil	MKSRYLYLAAAAGFLAGAVMECLPPHNITAAVLDAVAGAIFLFLGAGAQRQS
Ga0209166_101118402	3300027857	Surface Soil	MKSRYLYLAAFLAFLVAAVIEVRPPRNITAALLDAATALIFLFLAVGPQRRA
Ga0209169_101475572	3300027879	Soil	MKSRYLYLAASVAFLVGAALEAPRSVTAAVLDGIAGAIFLFLGVGPQKRV
Ga0209624_108290382	3300027895	Forest Soil	MKSRYLYLAAAAGFLAGAVVELLPPHNITAAVLDAVAGAIFLFLGAGAQKQS
Ga0209624_108528811	3300027895	Forest Soil	VKSRYLYLAASALFLVLAVLQLRHPRNLTAAVLNAAAGAIFFFLGATKS
Ga0209006_100516931	3300027908	Forest Soil	HMKSRYLYLAASVAFLVGAVLEAPRSVTAAVLDGIAGAIFLFLGVGPQKRV
Ga0209006_101814142	3300027908	Forest Soil	MKSRYLYLAAAAGFLAGAVVEFLPPHNITAAILDAVAGAIFLFLGAGKQKQT
Ga0209006_103679742	3300027908	Forest Soil	VKSRYLYLAASALFLVLALLQLRHPRNITAAVLNAAAGAIFFFLGATKS
Ga0302233_102372192	3300028746	Palsa	VKSRYLYLAASALFLALAVLQLRHPRNLTAAVLNAAAGAIFFFLGATKS
Ga0302219_101644672	3300028747	Palsa	MKSRYLYLAASIAFLVAAVVELRPPHNITAAVLNAAAGFIFLFLGAGPQRRA
Ga0302231_103628502	3300028775	Palsa	LYLAASIAFLVAAVVELRPPHNITAAVLNAAAGFIFLFLGAGPQRRA
Ga0302225_101118371	3300028780	Palsa	VKFRYLYLAASALFLVLAVLQLRPPRNLTAAVLDAAAGAIFFFLGVTKS
Ga0302225_101395812	3300028780	Palsa	MKSRYLYLAAAAGFLAGAVMECLPPHNVTAAVLDAAAGAIFLFLGLGAQKQR
Ga0302227_102155702	3300028795	Palsa	MKSRYFYLAASVAFLVGAVVEFFPPRGLTAAVLDAIAGAIFLFLGVSPQKMRVKPPE
Ga0302228_103549731	3300028808	Palsa	YLYLAAAAGFLAGAVVEFLPPHNMTAAILDAVAGAIFLFLGAGTRKQS
Ga0311368_104395681	3300029882	Palsa	YLYLAAAAGFLAGAVVECLPPHNITAAVLDAVAGAIFLFLGAGTRKQS
Ga0311369_105645842	3300029910	Palsa	MKSRYLYLAASVAFLVAAVMELRPPRNITAAVLDAVAGFIFLFLGAGPQRRA
Ga0311340_101559102	3300029943	Palsa	MKSKYLYLAAAVAFLVGAVVEFSRPRNITAAVLDAIAGAIFLFLGVGPQRRS
Ga0311340_102355753	3300029943	Palsa	MKSRYLYLAAAAGFLAGAVMECLPPHNVTAAVLDAAAGAIFLFLGLGAQKQS
Ga0311340_111116421	3300029943	Palsa	AGFLAGAVVESLPPHNITAAVLDAVAGAIFLFLGAGAQKQS
Ga0311371_109590981	3300029951	Palsa	MRSRYLYLAAAVAFLVGAVVEAPRSVTAAVLDGIAGAIFLFLGVVPQKRT
Ga0311339_101722773	3300029999	Palsa	MRSRYLYLAAAVAFLVGAVVEAPRSVTAAVLDGIAGAIFLFLGAGPQKRT
Ga0311339_102090062	3300029999	Palsa	MKSRYLYLAAAVAFLVGAVVEAPRSVTAAVLDGIAAAIFLFLGVGPQKRT
Ga0311339_110430132	3300029999	Palsa	MKSRYLYLAASVAFLVGAVMEFLPPRGLTAAILDAVAGAIFLFLGVSPQKMRIKPPE
Ga0311338_101375293	3300030007	Palsa	MKSRYLYLAAAAGFLAGAVVEFLPPHNMTAAILDAVAGAIFLFLGAGTRKQS
Ga0311338_105776162	3300030007	Palsa	MKSRYLYLAAAAGFLTGAVVEFLPPHNITAAVLDAVAGAIFLFLGAGAQRQS
Ga0311338_116536502	3300030007	Palsa	SSLHIASVEQMKSRYLYLAAAAGFLAGAVMECLPPHNVTAAVLDAAAGAIFLFLGLGAQKQS
Ga0302177_105211681	3300030053	Palsa	YLYLAAAAGFLAGAVVECLPPHNITAAVLDAVAGAIFLFLGAGAQRQS
Ga0302179_102974542	3300030058	Palsa	LTLGVMKSRYLYLAAALAFLVAAVIEFRAPRKLTPALLDVAAGAIFLFLGAGPQRTKS
Ga0302179_105297871	3300030058	Palsa	MKSRYLYLAAALAFLVAAVIEFRAPRKLTPALLDVAAGAI
Ga0311353_110203651	3300030399	Palsa	MKSKYLYLAAAVALLVGAVVEFSRPRNITAAVLDAIAGAIFLFLGVGPQRRS
Ga0302184_102028362	3300030490	Palsa	MKSRYLYLAASIAFLVAAVVELRPPHNITAAVLNAAA
Ga0311370_101068332	3300030503	Palsa	MKSRYLYLAAAVAFLVAAAVEAPRSVTAAVLDGIAGAIFLFLGVVPQKRA
Ga0311370_101792691	3300030503	Palsa	MKSRYFYLAASVAFLVGAVVEFFPPRGLTAAVLDAIAGAIFLFLGVSPQKMR
Ga0311370_106438162	3300030503	Palsa	GAVVESLPPHNITAAVLDAVAGAIFLFLGAGAQKQS
Ga0311370_107445962	3300030503	Palsa	MKFRYLYLAAAAGFLAGAVVEFLPPRNFTAAVLDAVAGAIFLFLGVAAQRQN
Ga0311370_108984422	3300030503	Palsa	MKSRYLYLAAAAGFLAGAVMESLPPHNITAAVLDAVAGAIFLFLGAGAQKQS
Ga0302183_102169782	3300030509	Palsa	MKSRYLYLAASIAFLVAAVVELRPPRNITAAVLNAAAGFIFLFLGAGPQRRA
Ga0311372_108088302	3300030520	Palsa	MKSRYLYLAAAAGFLAGAVVESLPPHNITAAVLDAVAGAIFLFLGAGAQKQS
Ga0302180_103160541	3300031028	Palsa	MRSRYLYLAAAVAFLVGAVVEAPRSVTAAVLDGIAAAIFLFLGVGPQKRT
Ga0302180_104214492	3300031028	Palsa	LLILGMKSRYLYLAASVAFLVAAVMELRPPRNITAAVLDAVAGFIFLFLGAGPQRRA
Ga0302180_105996871	3300031028	Palsa	MKSRYLYLAAALAFLVAAVIEFRAPRKITPALLDVAAGAI
Ga0302325_125649442	3300031234	Palsa	MKSRYFYLAASIAFLVAAVMELMPRRNLTAAALDAAAGAIFVFLGVTTKS
Ga0302325_132446791	3300031234	Palsa	MKSRYLYLAAAIGFLVAAVIEFRAPRNLTAALLDAAAGAIFLFLGAGP
Ga0302324_1011328782	3300031236	Palsa	FNLEQMKFRYLYLAAAAGFLAGAVVEFLPPRNFTAAVLDAVAGAIFLFLGVAAQRQN
Ga0302326_103630704	3300031525	Palsa	AAAGFLAVAVVECLPPHNITAAVLDAVAGAIFLFLGAGAQRQS
Ga0302326_115140962	3300031525	Palsa	MKSSYLYLAAAVGFLVGAVLEAPRSVTAAVLDGSAAAIFLFLGVVPKKRT
Ga0302326_131554661	3300031525	Palsa	LAMKSRYLYLAASVAFFVVAVLKLLPPRNLTAAALNAVTAVIFLFLGAGPRRPM
Ga0310686_1064425102	3300031708	Soil	VKSKYLYLAASVLFLVLAVLQLRPPRNITAAVLNAAAAIIFFFLGATKS
Ga0310686_1133370372	3300031708	Soil	SVEQMKSRYLYLAAAAGFLAGAVVECLPPHNITAAILDAVAGAIFLFLGAGAQRQS
Ga0310686_1163181422	3300031708	Soil	AFLVGAVVEFTRPHNVLAAVLDAIAGAIFLFLGIGPQKRA
Ga0307474_105537872	3300031718	Hardwood Forest Soil	MKFRYLYLAAAIAFLVAAVIEFRAPRNFTAALLDAAAGAIFLFLGVGPQRTKS
Ga0307478_108882792	3300031823	Hardwood Forest Soil	MKSRFLYLAAAAGFLAGAVVEFLPPHNITAAVLDAVAGAIFLFLGAGTQKQS
Ga0348332_108803352	3300032515	Plant Litter	MKSRYLYLAAAAGFLAGAIVEFLPPHNITAAILDAVAGTIFLFLGAGAQKQS
Ga0348332_130274372	3300032515	Plant Litter	MKSRYLYLAASVAFLVAAVMELRPPRNITAAVLDAAAGFIFLFLGAGPQRRP
Ga0335074_100355282	3300032895	Soil	MVSRFFFLAASVAFLVYAVVELRPPHNFTAAALDAAAGAIFLFLAVGPRKRR
Ga0370483_0026227_582_743	3300034124	Untreated Peat Soil	MKFRYLYLVAAIAFLVAAVIEFRAPRNLTAALLDAAAGAIFLFLGAGPQRTKS
Ga0370515_0015325_135_308	3300034163	Untreated Peat Soil	MKSRYLYLAASVAFLVGAAVEFLPPRGLTAAILDAVAGAIFLFLGVSPQKMRIKPPE
Ga0370515_0195610_78_236	3300034163	Untreated Peat Soil	MKSKYLYLAASVAFLVGAVVEFTRPHNVLAAVLDAIAGAIFLFLGIGPQKRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055879

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences