Metagenome / Metatranscriptome Family F055704

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055704
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	87 residues
Representative Sequence	VSVDDAQFQSLLEQVRELHRLADEVTRETTRIHANVRARLSWERSPPTLPPQQREIADEVVEILAKPRLSSSQSRQLQRAFFGK
Number of Associated Samples	101
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	24.64 %
% of genes near scaffold ends (potentially truncated)	34.78 %
% of genes from short scaffolds (< 2000 bps)	86.96 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (33.333 % of family members)
Environment Ontology (ENVO)	Unclassified (31.884 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.203 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.36% β-sheet: 0.00% Coil/Unstructured: 44.64%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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SCOP family	SCOP domain	Representative PDB	TM-score
a.250.1.1: IpaD-like	d3nfta_	3nft	0.6509
a.24.9.1: alpha-catenin/vinculin	d1dova_	1dov	0.62905
e.8.1.4: RNA-dependent RNA-polymerase	d1muka_	1muk	0.60615
f.5.1.0: automated matches	d5azsa_	5azs	0.60211
a.24.23.1: Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain	d1szia_	1szi	0.58582

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF00196	GerE	4.35
PF13469	Sulfotransfer_3	2.17
PF12802	MarR_2	1.45
PF00903	Glyoxalase	1.45
PF05974	DUF892	1.45
PF02058	Guanylin	1.45
PF07366	SnoaL	1.45
PF03793	PASTA	1.45
PF01230	HIT	0.72
PF07690	MFS_1	0.72
PF12697	Abhydrolase_6	0.72
PF05552	TM_helix	0.72
PF05345	He_PIG	0.72
PF01872	RibD_C	0.72
PF13344	Hydrolase_6	0.72
PF14137	DUF4304	0.72
PF13466	STAS_2	0.72
PF13155	Toprim_2	0.72
PF00011	HSP20	0.72
PF02163	Peptidase_M50	0.72
PF00578	AhpC-TSA	0.72
PF00583	Acetyltransf_1	0.72
PF13519	VWA_2	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	1.45
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.72
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.72
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.72
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.72
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	77.54 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	76.09 %
Unclassified	root	N/A	16.67 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.67 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14.49 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.67 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	13.04 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.67 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.04 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_6389_length_1405_cov_8.704626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1437	Open in IMG/M
2140918013\|NODE_82567_length_1550_cov_8.429677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1582	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0652372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1194	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11268716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2450	Open in IMG/M
3300000858\|JGI10213J12805_10115961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	686	Open in IMG/M
3300000858\|JGI10213J12805_10202294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	773	Open in IMG/M
3300000956\|JGI10216J12902_104469941	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2290	Open in IMG/M
3300000956\|JGI10216J12902_113054697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1071	Open in IMG/M
3300000956\|JGI10216J12902_113614340	Not Available	1013	Open in IMG/M
3300002547\|JGI24973J35851_1008462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1698	Open in IMG/M
3300003993\|Ga0055468_10062236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	977	Open in IMG/M
3300004114\|Ga0062593_100295994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1375	Open in IMG/M
3300004114\|Ga0062593_102711351	Not Available	564	Open in IMG/M
3300004156\|Ga0062589_100159359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1563	Open in IMG/M
3300004643\|Ga0062591_100776784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	880	Open in IMG/M
3300004643\|Ga0062591_101782778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	627	Open in IMG/M
3300004643\|Ga0062591_102224411	Not Available	571	Open in IMG/M
3300004643\|Ga0062591_102485601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	544	Open in IMG/M
3300005168\|Ga0066809_10001507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3590	Open in IMG/M
3300005332\|Ga0066388_104593140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	703	Open in IMG/M
3300005356\|Ga0070674_100556457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	963	Open in IMG/M
3300005356\|Ga0070674_101690301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	572	Open in IMG/M
3300005365\|Ga0070688_100683279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	793	Open in IMG/M
3300005441\|Ga0070700_100878304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	728	Open in IMG/M
3300005471\|Ga0070698_100163639	All Organisms → cellular organisms → Bacteria	2168	Open in IMG/M
3300005471\|Ga0070698_102152867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300005546\|Ga0070696_101613715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	557	Open in IMG/M
3300005713\|Ga0066905_101110261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	703	Open in IMG/M
3300005718\|Ga0068866_11358155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	518	Open in IMG/M
3300005764\|Ga0066903_100576285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1941	Open in IMG/M
3300005764\|Ga0066903_100828990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1660	Open in IMG/M
3300005764\|Ga0066903_104428928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	750	Open in IMG/M
3300006581\|Ga0074048_11122083	Not Available	511	Open in IMG/M
3300006845\|Ga0075421_100050811	All Organisms → cellular organisms → Bacteria	5247	Open in IMG/M
3300006846\|Ga0075430_101012734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	684	Open in IMG/M
3300006904\|Ga0075424_101665585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	676	Open in IMG/M
3300006914\|Ga0075436_100447619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	940	Open in IMG/M
3300006969\|Ga0075419_11207839	Not Available	558	Open in IMG/M
3300009137\|Ga0066709_101112344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1162	Open in IMG/M
3300009147\|Ga0114129_10875250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1140	Open in IMG/M
3300009147\|Ga0114129_11242247	Not Available	926	Open in IMG/M
3300009147\|Ga0114129_11628843	Not Available	789	Open in IMG/M
3300009820\|Ga0105085_1084405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	606	Open in IMG/M
3300010029\|Ga0105074_1031302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	908	Open in IMG/M
3300010360\|Ga0126372_10656877	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300011412\|Ga0137424_1001166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2348	Open in IMG/M
3300011412\|Ga0137424_1098267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	598	Open in IMG/M
3300011422\|Ga0137425_1036164	Not Available	1082	Open in IMG/M
3300011439\|Ga0137432_1058127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1171	Open in IMG/M
3300012043\|Ga0136631_10004712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4640	Open in IMG/M
3300012045\|Ga0136623_10105375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1230	Open in IMG/M
3300012529\|Ga0136630_1296768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	576	Open in IMG/M
3300012672\|Ga0137317_1016154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	681	Open in IMG/M
3300012672\|Ga0137317_1020279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	629	Open in IMG/M
3300012681\|Ga0136613_10002801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9410	Open in IMG/M
3300012897\|Ga0157285_10348574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	518	Open in IMG/M
3300012902\|Ga0157291_10016121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1417	Open in IMG/M
3300012905\|Ga0157296_10209032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	628	Open in IMG/M
3300012906\|Ga0157295_10052400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	976	Open in IMG/M
3300012912\|Ga0157306_10407433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	533	Open in IMG/M
3300012913\|Ga0157298_10454336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	503	Open in IMG/M
3300012951\|Ga0164300_10933586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	552	Open in IMG/M
3300012957\|Ga0164303_10476703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	792	Open in IMG/M
3300012958\|Ga0164299_10629074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	739	Open in IMG/M
3300012961\|Ga0164302_10400438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	936	Open in IMG/M
3300014969\|Ga0157376_10506600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1187	Open in IMG/M
3300015371\|Ga0132258_10384674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3481	Open in IMG/M
3300015371\|Ga0132258_10517130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2988	Open in IMG/M
3300015371\|Ga0132258_11067516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2041	Open in IMG/M
3300015371\|Ga0132258_12798567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1215	Open in IMG/M
3300015372\|Ga0132256_100475682	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300015372\|Ga0132256_100637982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1180	Open in IMG/M
3300015372\|Ga0132256_100791403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1065	Open in IMG/M
3300015373\|Ga0132257_100257979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2083	Open in IMG/M
3300015374\|Ga0132255_103168595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	701	Open in IMG/M
3300015374\|Ga0132255_104318015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	603	Open in IMG/M
3300017789\|Ga0136617_10805617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	722	Open in IMG/M
3300017965\|Ga0190266_10001230	All Organisms → cellular organisms → Bacteria	4696	Open in IMG/M
3300017965\|Ga0190266_10648983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	649	Open in IMG/M
3300017965\|Ga0190266_11138016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	535	Open in IMG/M
3300018031\|Ga0184634_10317962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	714	Open in IMG/M
3300018076\|Ga0184609_10103079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1284	Open in IMG/M
3300018081\|Ga0184625_10207717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1026	Open in IMG/M
3300018081\|Ga0184625_10565920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	563	Open in IMG/M
3300018432\|Ga0190275_12396290	Not Available	606	Open in IMG/M
3300018466\|Ga0190268_10195769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1096	Open in IMG/M
3300018466\|Ga0190268_11672948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	565	Open in IMG/M
3300018469\|Ga0190270_10092473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2286	Open in IMG/M
3300018469\|Ga0190270_10096154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2252	Open in IMG/M
3300018469\|Ga0190270_10584964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1084	Open in IMG/M
3300018469\|Ga0190270_10808615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	945	Open in IMG/M
3300018469\|Ga0190270_10985966	Not Available	868	Open in IMG/M
3300018469\|Ga0190270_11169091	Not Available	806	Open in IMG/M
3300018469\|Ga0190270_11455330	Not Available	733	Open in IMG/M
3300018481\|Ga0190271_13005203	Not Available	566	Open in IMG/M
3300019356\|Ga0173481_10436422	Not Available	650	Open in IMG/M
3300019767\|Ga0190267_11153889	Not Available	562	Open in IMG/M
3300019884\|Ga0193741_1129220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	635	Open in IMG/M
3300020016\|Ga0193696_1044534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1177	Open in IMG/M
3300020020\|Ga0193738_1049218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1274	Open in IMG/M
3300020064\|Ga0180107_1035095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	666	Open in IMG/M
3300021082\|Ga0210380_10151142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1042	Open in IMG/M
3300022756\|Ga0222622_10230512	All Organisms → cellular organisms → Bacteria	1245	Open in IMG/M
3300022756\|Ga0222622_11131912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	576	Open in IMG/M
3300022901\|Ga0247788_1003591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2460	Open in IMG/M
3300023266\|Ga0247789_1006044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1834	Open in IMG/M
3300025796\|Ga0210113_1037782	Not Available	979	Open in IMG/M
3300025927\|Ga0207687_11723245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	537	Open in IMG/M
3300025937\|Ga0207669_10129947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1729	Open in IMG/M
3300027560\|Ga0207981_1007523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1929	Open in IMG/M
3300027638\|Ga0208612_1001957	All Organisms → cellular organisms → Bacteria	8364	Open in IMG/M
3300027650\|Ga0256866_1098573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	788	Open in IMG/M
3300027909\|Ga0209382_11299981	Not Available	737	Open in IMG/M
3300028596\|Ga0247821_10803919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	620	Open in IMG/M
3300028744\|Ga0307318_10287599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	575	Open in IMG/M
3300028768\|Ga0307280_10149056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	807	Open in IMG/M
3300028771\|Ga0307320_10249117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	700	Open in IMG/M
3300028782\|Ga0307306_10026944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1344	Open in IMG/M
3300028811\|Ga0307292_10092847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1179	Open in IMG/M
3300028876\|Ga0307286_10061404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1287	Open in IMG/M
3300028876\|Ga0307286_10249233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	650	Open in IMG/M
3300028878\|Ga0307278_10025649	All Organisms → cellular organisms → Bacteria	2709	Open in IMG/M
3300028881\|Ga0307277_10239808	Not Available	799	Open in IMG/M
3300028889\|Ga0247827_11070759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	552	Open in IMG/M
3300028889\|Ga0247827_11090254	Not Available	548	Open in IMG/M
3300030006\|Ga0299907_10180818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1743	Open in IMG/M
3300030619\|Ga0268386_11023202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	506	Open in IMG/M
3300030903\|Ga0308206_1055331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	799	Open in IMG/M
3300031170\|Ga0307498_10016588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1601	Open in IMG/M
3300031170\|Ga0307498_10045592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1162	Open in IMG/M
3300031170\|Ga0307498_10147491	Not Available	777	Open in IMG/M
3300031547\|Ga0310887_10817840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	586	Open in IMG/M
3300031854\|Ga0310904_10961569	Not Available	606	Open in IMG/M
3300031858\|Ga0310892_10412398	Not Available	882	Open in IMG/M
3300032075\|Ga0310890_10831346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	733	Open in IMG/M
3300033550\|Ga0247829_11401175	Not Available	578	Open in IMG/M
3300033811\|Ga0364924_021255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1281	Open in IMG/M
3300034681\|Ga0370546_006843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1245	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.88%
Host-Associated	Host-Associated	18.12%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.22%
Plants	Host-Associated → Plants	18.12%
Aquatic	Environmental → Aquatic	16.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.32%
Sediment	Environmental → Aquatic → Sediment	8.70%
Freshwater	Environmental → Aquatic → Freshwater	6.52%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.80%
Marine	Environmental → Aquatic → Marine	1.45%
Floodplain	Environmental → Terrestrial → Floodplain	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.70%
Loam	Environmental → Terrestrial → Soil → Loam	7.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.97%
Ice	Environmental → Aquatic → Freshwater → Ice	5.07%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.07%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.35%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.45%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.45%
Sand	Environmental → Terrestrial → Soil → Sand	1.45%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.23%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.52%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.80%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	5.07%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.62%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.45%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.45%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.45%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	33.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.52%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.07%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.07%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.35%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	3.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.62%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.17%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.17%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.45%
Polar Desert	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert	1.45%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.45%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002547	Polar desert microbial communities from Antarctic Dry Valleys - UQ889	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300011422	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT640_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300012043	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ601 (22.06)	Environmental	Open in IMG/M
3300012045	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)	Environmental	Open in IMG/M
3300012529	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ568 (21.06)	Environmental	Open in IMG/M
3300012672	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT266_2	Environmental	Open in IMG/M
3300012681	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300020064	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT27_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025796	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027638	Polar desert microbial communities from Antarctic Dry Valleys - UQ889 (SPAdes)	Environmental	Open in IMG/M
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_00067510	2140918013	Soil	VPIDDREFQSLLEQVRALHLLADELTRETSRLHANVRARMSWAHDPPPLPPEQTRLADEAVEALSRPRLSSSQSRHLQRAFFGK
Iowa-Corn-GraphCirc_00539430	2140918013	Soil	VPVDDAQFQSLLEQVRELHRLADEVTRETTRIHANVRARLAWERDPPTLPPTQRVIADEVVEILAKPRLSSSQSRRLQRAFFGR
ICChiseqgaiiDRAFT_06523722	3300000033	Soil	VPVDDAQFQSLLEQVRELHRLADEVTRETTRIHANVRARLAWERDPPTLPPTQRVIADEVVEILAKPRLSSSQSRRLQRAFFGR*
ICChiseqgaiiFebDRAFT_112687163	3300000363	Soil	VPIDDREFQSLLEQVRALHLLADELTRETSRLHANVRARMSWAHDPPPLPPEQTRLADEAVEALSRPRLSSSQSRHLQRAFFGK*
JGI10213J12805_101159611	3300000858	Soil	VPVDDEQFQSLLEQVRELHRLADEVTRESSRLRANVQARLSWERDPPTLPPTQREIADEVVEILSKPRLSSSQARQLQRAFFGR*
JGI10213J12805_102022941	3300000858	Soil	VSVDDAQFQSLLEQVRELHRLADEVTRETTRIHANVRARLSWERSPPTLPPQQREIADEVVEILAKPRLSSSQSRQLQRAFFGK*
JGI10216J12902_1044699411	3300000956	Soil	MPVDDAQFESLLEQVRELTRRTDEITREQSRLQAHVRARLNWDRQPPPLPPEQMRIADEVVDVLTKRRLSSSQARLLHRTYFQR*
JGI10216J12902_1130546972	3300000956	Soil	VPDVAVDDAQFQSLLEQVRELHRLADEVTRETTRIQANVRARLSWDTNPPPLPHVQRRIADEAVEILAKPKLSSSQSRQLHRVFFGR*
JGI10216J12902_1136143402	3300000956	Soil	VAIDDEQFQSLLEQVRELHRLADEVTRETTRIHTNVRARLSWDLNPPPLPHVQRRIADEAVEILARPKLSSTQSRQLHRVFFGR*
JGI24973J35851_10084622	3300002547	Polar Desert	VTVDDVQFQSLLEQVRELHELADELTRSPARIHENVRARLSWNEPPTLPPEQTKLADEAVEMLGLPRLSPSQARQLQQAFFGR*
Ga0055468_100622361	3300003993	Natural And Restored Wetlands	MEGEKFESLLDQVRELHRLADELSRERSKFNAHVRARLIWDDQNAPPLPPRQRNLADEVVEALSKARLTTAQSRQLYRVFFGSGRR*
Ga0062593_1002959944	3300004114	Soil	SRGRARPAGSHVVPSRVRSTRSTFSGIDEEAFQSLLEQVTELHRLADEITLESNRLHANVRARLSWDRDAPPLPPEQRKIADEAVDVLSTPRLSSAQSRLLQRAFFGR*
Ga0062593_1027113511	3300004114	Soil	FESLFEQVRELHRLADELTRDKSRLEENVRARLRWDDRSAPSLPGPQREIADQAVEILSKPRMSSQSKALYRAFFGR*
Ga0062589_1001593592	3300004156	Soil	VTELHRLADEITLESNRLHANVRARLSWDRDAPPLPPEQRKIADEAVDVLSTPRLSSAQSRLLQRAFFGR*
Ga0062591_1007767841	3300004643	Soil	VPIADEEFQSLLDQVRDLHRLADQVTRERARIHANVRARLSWDRNVPVLPPEQRALADEVVEVLAKTRL
Ga0062591_1017827781	3300004643	Soil	FVAIADEEFQSLLDQVRDLHRLADEVTSEKARIDANVRARLSWERNPPVLPAEQRKLADDVVEVLAKPRLSPSQLRQLRRAFFGR*
Ga0062591_1022244111	3300004643	Soil	VEDAPFESLFEQVRELHRLADELTRDKSRLEENVRARLRWDDRSAPSLPGPQREIADQAVEILSKPRMSSQSKALYRAFFGR*
Ga0062591_1024856012	3300004643	Soil	ARRFSACRGTVPYRVPDVAVDDAQFQSLLEQVRELHRLADEVTRETTRIQANVRARLSWDLNPPPLPHVQRRIADRAVEILAKPKLSSSQSRQLHRVFFGR*
Ga0066809_100015072	3300005168	Soil	VPVDDIQFQSLLEQVRELHRVADDLTRESTRIHANVRARLAWDRNPPSLPAGQRRLADEVVEILEKPRLSSSQSRRLQRAFFGR*
Ga0066388_1045931401	3300005332	Tropical Forest Soil	MRPPAVSPHDADAVSYRCGGVSVDDLEFQSLLEQVRELHRRADEVTRETTRIHTNVRARLSWDLNPPPLPHVQRRIADEAVEILATPKLSSSQSRQLHRAFFGR*
Ga0070674_1005564574	3300005356	Miscanthus Rhizosphere	ASRGRARPAGSHVVPSRVRSTRSTFSGIDEEAFQSLLEQVTELHRLADEITLESNRLHANVRARLSWDRDAPPLPPEQRKIADEAVDVLSTPRLSSAQSRLLQRAFFGR*
Ga0070674_1016903012	3300005356	Miscanthus Rhizosphere	WPFVPIADEEFQSLLDQVRDLHRLADEVTREKTRIDENVRARLSWDRNPPVLPAEQRKLADDVVEVLAKPRLSSSQSRQLHRAFFRR*
Ga0070688_1006832792	3300005365	Switchgrass Rhizosphere	RDLHRLADEVTREKTRIDENVRARLSWDRNPPVLPAEQRKLADDVVEVLAKPRLSSSQSRQLHRAFFRR*
Ga0070700_1008783041	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VPIADEEFQSLLDQVRDLHRLADEVTREKTRIDENVRARLSWDRNPPVLPAEQRKLADDVVEVLAKPRLSSSQSRQLHRAFFRR*
Ga0070698_1001636394	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VPYRSPDVALDDPQFQSLLEQVRELHRLADEVTRETTRIHANVRARLSWDLNPPPLPQVQRRIADEAVEILAKPKLSSSQSRQLHRVFFGR*
Ga0070698_1021528672	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LLEQVRELHRLTDEVTRESTRIQANVRARLSWDRDAPPLPQEQREIADEVVEVLSKPRLSSLQSRQLQRAFFGR*
Ga0070696_1016137152	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	EEFQSLLDQVRDLHRLADEVTREKTRIDENVRARLSWDRNPPVLPAEQRKLADDVVEVLAKPRLSSSQSRQLHRAFFRR*
Ga0066905_1011102612	3300005713	Tropical Forest Soil	VAVDDTQFQSLLEQVRELHRLADEVTRETTRMHANVRARLSWDLNPPPLPHAQRTIADEAVEILATPKLSSLQSRQLQRVFFGR*
Ga0068866_113581552	3300005718	Miscanthus Rhizosphere	GIDEEAFQSLLEQVTELHRLADEITLESNRLHANVRARLSWDRDAPPLPPEQRKIADEAVDVLSTPRLSSAQSRLLQRAFFGR*
Ga0066903_1005762852	3300005764	Tropical Forest Soil	VTVEDPKFQSLLEQVRDLHRLADELTSSKSGIHANVRARMRWERQPPSLPQKQRELADRAVEVLGTPRLSPSQSRELQRIFFGR*
Ga0066903_1008289902	3300005764	Tropical Forest Soil	VAVDDAQFQSLLDQVRELHRLADEVTRETTRMHANVRARLTWDPNPPPLPHAQRKIADEAVEILARRKLSSSQSRQLQRVFFGR*
Ga0066903_1044289281	3300005764	Tropical Forest Soil	CGGRAHSLEVPPHATARRLSALRDAVPYGLTDVAVDDAKFQSLLEQVRELHRLADEVTRETTRIHSNVRARLSWDLNPPPLPQVQRTIADEAVEILATPKLSPTQSRRLQQVFFGR*
Ga0074048_111220831	3300006581	Soil	MGIDEEQFESLLEQVRELHRRADELTRSSTQIHANVRARLSWERAVPTLPSEQTRIADEVVEILAKPRLSSPQSRQLRRAFFGK*
Ga0075421_1000508112	3300006845	Populus Rhizosphere	VPVDDDQFQSLLEQVQELHRIADEISREKVRFDAHVRARLSWDDRNAPPLPREQRDLADEVVELLSKPRLSSSQSRQLHRVFFGR*
Ga0075430_1010127341	3300006846	Populus Rhizosphere	MSIDDEQFESLLDQVRELHRRADEITRESTRLQAHVQARLSWERNPPPLPSPQREIADEVVEILAKPRLSSSQSRALQRAFFGRR*
Ga0075424_1016655851	3300006904	Populus Rhizosphere	LEVPPHTTARRFSACSDTVPYRVPDVAVDDAQFQSLLEQVRELHRLADEVTRETTRIQANVRARLSWDLNPPPLPHVQRRIADRAVEILAKPKLSSSQSRQLHRVFFGR*
Ga0075436_1004476192	3300006914	Populus Rhizosphere	VAIDDEQFQSLLEQVRELHRRADEVTRETTRIHANVRARLSWDLNPPPLPHVQRRIADEAVEILARPKLSSTQSRQLHRVFFGR*
Ga0075419_112078391	3300006969	Populus Rhizosphere	VPVDDDQFQSLLEQVQELHRIADEISREKVRFDAHVRARLSWDDRNAPPLPREQRDLADEVVELLSKPRLSSSQSRQLHRV
Ga0066709_1011123441	3300009137	Grasslands Soil	VQFQTLLEQVRDLHQLADELTHSNARIHANVRARLSWDPLPPVLPREQREIADEVVGLLEQRRLSSSQARRLQRAFFGR*
Ga0114129_108752503	3300009147	Populus Rhizosphere	VPINDEQFQSLLEQVRELHRLTDEVTRESTRIQANVRARLSWDRDAPPLPQEQREIADEVVEVLSKPRLSSLQSRQLQRAFFGR*
Ga0114129_112422471	3300009147	Populus Rhizosphere	QSLLEQVQELHRIADEISREKVRFDAHVRARLSWDDRNAPPLPREQRDLADEVVELLSKPRLSSSQSRQLHRVFFGR*
Ga0114129_116288431	3300009147	Populus Rhizosphere	LEVPPHATARRFSARRDTVPYRVPDVAVDDAQFQSLLEQVRELHRLADEVTRETTRIHANVRARLSWDANPPSLPSVQRTIADEAVEILAKPKLSSSQSRRLQRVFFGR*
Ga0105085_10844052	3300009820	Groundwater Sand	VPIEAVQFQALLEQVRELHRLTDELAPSNARLHQNVRDRLSWNPHPPPLPPELRKVADEVVEVLAKPRLSSSQSRQLQRAFFGR*
Ga0105074_10313023	3300010029	Groundwater Sand	PPREGLFYSYPSIVPIEAVQFQALLEQVRELHRLTDELAPSNARLHQNVRDRLSWNPHPPPLPPELRKVADEVVEVLAKPRLSSSQSRQLQRAFFGR*
Ga0126372_106568773	3300010360	Tropical Forest Soil	VAVDDTQFQSLLDQVRELHRLADEVTRETTRMHANVRARLTWDPNPPPLPHAQRKIADEAVEILARHKLSSSQSRELQRVFFGR*
Ga0137424_10011664	3300011412	Soil	VSVGDAKFQSLLEQVRELHRLADEITRESTRIHANVRARMSWDRNPPSLPAEQRRLADEVVETLSNPRLSSSQARTLQRAFFGR*
Ga0137424_10982672	3300011412	Soil	VPIADEEFQSLLEQVRDLHRLADEVTRESTRLHANVRARLNWDRNPPVLTPEQRKLADQVVEALNTPRLSSRQSEQLYRVYFGR*
Ga0137425_10361642	3300011422	Soil	ELHRLADEISREKVRFDAHVRARLSWDDANAPPLPAGQRDLADEVVNVLSKSHLSSSQSRQLHRVFFGR*
Ga0137432_10581274	3300011439	Soil	MAVGISDEHFETLLEQVRDLHRLADEVTRERARIDANVRARLSWGRDVPPLPPEQRKVADEAVEALSKSRLSSSQSRQLHRAFFGR*
Ga0136631_100047122	3300012043	Polar Desert Sand	VPIADDEFQSLLEQVQDLHRIADEVTREKTRIHANVRARLSWDRNPPALPSEQRKVADEAVEILAKPRLSSSQSTQLQRAFFGK*
Ga0136623_101053752	3300012045	Polar Desert Sand	VPIADDEFQSLLEQVLDLHRIADEVTREKTRIHANVRARLSWDRNPPALPSEQRKVADEAIEILAKPRLSSSQYRQLQRAFFGK*
Ga0136630_12967681	3300012529	Polar Desert Sand	TRSYSWPVVPIADDEFQSLLEQVLDLHRIADEVTREKTRIHANVRARLSWDRSPPALPSEQRKVADEAVEVLAKPGLSSSQYRQLQRAFFGK*
Ga0137317_10161542	3300012672	Soil	VSVGDAKFQSLFEQVRELHRLADEITRESTRIHANVRARMSWDRNPPSLPAEQRRLADEVVETLSNPRLSSSQARTLQRAFFGR*
Ga0137317_10202791	3300012672	Soil	VPIADEEFQSLLEQVRDLHRLADEVTRESTRLHANVRARLNWDRNPPVLPPEQRKLADQVVEALNTPRLSSRQSEQLYRVYFGR*
Ga0136613_1000280111	3300012681	Polar Desert Sand	VPIADDEFQSLLEQVLDLHRIADEVTREKTRIHANVRARLSWDRSPPALPSEQRKVADEAVEVLAKPGLSSSQYRQLQRAFFGR*
Ga0157285_103485741	3300012897	Soil	VRDLHRLADEVTREKSRIDENVRARLSWDRNPPVLPTEQRKLADDVVEALAKPRLSSSQSRQLHRAFFRR*
Ga0157291_100161212	3300012902	Soil	VPIADEEFQSLLDQVRDLHRLADQVTRERARIHANVRARLSWDRNVPVLPPEQRALADEVVEVLAKTRLSSTQSQTLQRAFFGK*
Ga0157296_102090321	3300012905	Soil	ADEEFQSLLDQVRDLHRLADQVTRERARIHANVRARLSWDRNVPVLPPEQRALADEVVEVLAKTRLSSTQSQTLQRAFFGK*
Ga0157295_100524003	3300012906	Soil	VTELHRLADEITLESNRLHANVRARLSWDRDAPPLPPEQRKIADEAVDVLSTPRLSSAQSRLLRRAFFGR
Ga0157306_104074331	3300012912	Soil	EEFQSLLDQVRDLHRLADQVTRERARIHANVRARLSWDRNAPVLPPEQRALADEVVEVLAKTRLSSTQSQTLQRAFFGK*
Ga0157298_104543362	3300012913	Soil	HVVPSRVRSTRSTFSGIDEEAFQSLLEQVTELHRLADEITLESNRLHANVRARLSWDRDAPPLPPEQRKIADEAVDVLSTPRLSSAQSRLLQRAFFGR*
Ga0164300_109335861	3300012951	Soil	VAIDDEQFQSLLEQVRELHRRADEVTRETTRIQANVRARLSWDLNPPPLPHVQRRIADEAVEILARPKLSSTQSRQLHRIFFGR*
Ga0164303_104767032	3300012957	Soil	MEVPPQATARRLCARRETIPYGLRDVAIDDEQVQSLLEQVRELHRLADEVTRETTRIQANVRARLSWDLNPPPLPHVQRRIADRAVEILAKPKLSSSQSRQLHRVFFGR*
Ga0164299_106290741	3300012958	Soil	VAIDDEQFQSLLEQVRDLHRRADEVTRETTRIQANVRARLSWDLNPPPLPHVQRRIADRAVEILAKPKLSSSQSRQLHRIFFGR*
Ga0164302_104004382	3300012961	Soil	PDDQRKRVADWLSAPKCERLRILRRAAHSLEVPPHTTARRFSACRDTVTYRVPDVAVDDAQFQSLLEQVRELHRLADEVTRETTRIQANVRARLSWDLNPPPLPHVQRRIADRAVEILAKPKLSSSQSRQLHRVFFGR*
Ga0157376_105066002	3300014969	Miscanthus Rhizosphere	VAIDDEQFLSLLEQVRELHRRADEVTRETTRIHANVRARLSWDLNPPPLPHVQRRIADEAVEILARPKLSSTQSRQLHRIFFGR*
Ga0132258_103846742	3300015371	Arabidopsis Rhizosphere	LEVPPHATARRLSAWRVTVPYGLSDVAVDDRQFQSLLEQVRELHRLADEATRETTRIHANVRARLSWDPNPPPLPHVQRTIADDAVEILAMAKLSSSQSRELHRAFFKR*
Ga0132258_105171301	3300015371	Arabidopsis Rhizosphere	MEVPPHATARRLCARRETIPYGLPEVAIDDEQFQSLLEQVRELHRRADEVTRETTRIQANVRARLSWDLNPPPLPHVQRRIADEAVEILARPKLSSTQSRQLHRIFFGR*
Ga0132258_110675162	3300015371	Arabidopsis Rhizosphere	VPLDDEKFQSLLDQVRELHRLADEATRERSRFDAHVRARLQWADRNAPPLPAPQRDLADEAVDALSKPRLSSSQSRQLYRAFFRKSGR*
Ga0132258_127985671	3300015371	Arabidopsis Rhizosphere	TGTAREGLVSARSYPWPFVPIADEEFQSLLDQVRDLHRLADEVTREKTRIDENVRARLSWDRNPPVLPAEQRKLADDVVEALAKPRLSSSQSRQLHRAFFRR*
Ga0132256_1004756821	3300015372	Arabidopsis Rhizosphere	MEVPPHATARRLCARRETIPYGLPDVAIDDEQFQSLLEQVRELHRRADEVTRETTRIQANVRARLSWDLNPPPLPHVQRRIADEAVEILARPKLSSTQSRQLHRIFFGR*
Ga0132256_1006379821	3300015372	Arabidopsis Rhizosphere	MPYGLRDVAVDDTKFQSLLEQVRELHRLADEATRETTRIQANVRARLSWDPNPPPLPHVQRTIADEAVEILATAKLSSSQSRELQRAFFRK*
Ga0132256_1007914032	3300015372	Arabidopsis Rhizosphere	LEVPPHATARRLSAWRVTVPYGLGDVAVDDTQFQSLLEQVRELHRLADEATRETTRIHANVRARLSWDPNPPPLPHVQRTIADDAVEILAMAKLSSSQSRELHRAFFKR*
Ga0132257_1002579791	3300015373	Arabidopsis Rhizosphere	RLHALRRAAHSLEVPPHATARRLSAWRDTVPYGLGDVAVDDTQFQSLLEQVRELHRLADEATRETTRIHANVRARLSWDPNPPPLPHVQRTIADEAVEILATTKLSSSQSRELHRAFFRK
Ga0132255_1031685951	3300015374	Arabidopsis Rhizosphere	VAIDDEQFQSLLEQVRELHRRADEVTRETTRIQANVRARLSWDLNPPPLPHVQRRIADEAVEILARPKLSSTQSRQLHRVFFGR*
Ga0132255_1043180151	3300015374	Arabidopsis Rhizosphere	LEVPPHATARRLSAWRVTVPYGLGDVAVDDRQFQSLLEQVRELHRLADEATRETTRIHANVRARLSWDPNPPPLPHVQRTIADEAVEILATTKLSSSQSRELHRAFFRK*
Ga0136617_108056172	3300017789	Polar Desert Sand	PLGEHVWRVREGPAWTRSYSWPVVPIADDEFQSLLEQVLDLHRIADEVTREKTRIHANVRARLSWDRNPPALPSEQRKVADEAIEILAKPRLSSSQYRQLQRAFFGK
Ga0190266_100012301	3300017965	Soil	LAERRDQEGLVWRRSYPWQVVPIADEEFQSLLDQVRDLHRLADEVTREKTRIDENVRARLSWGSNPPVLPAEQRKLADEVVELLARPRLSSSQSRHLQQAFFGR
Ga0190266_106489831	3300017965	Soil	SVVVVLPDGMPINDEQFESLLEQVRDLHRRADEITQESSRLRANVQARLSWERNPPPLPSAQREIADEVVEILAKPRLSSSQSRALQRAFFGRR
Ga0190266_111380161	3300017965	Soil	VPIEDAKFQTLLEQVRELHRLADEVTRESTRIHANVRARMSWDRNPTSLPPEQRKLADEVVETLSNPRLSSSQSRTLQRAFFGR
Ga0184634_103179622	3300018031	Groundwater Sediment	LPTKSFNRCSIRSQDLHRHTDEVTREKTRIDENVRARLSWDRDPPVLPSEQRKLADVVVEVLAKPRLSSSQSLQLQQAFFGH
Ga0184609_101030792	3300018076	Groundwater Sediment	MVPIDGVQFESLLEQVRELHQLADELTHSSSTRIHANVRARLNWSDEAPALPQDQSKLADEVLEVLEKPQLSSSQALQLQRAFFGK
Ga0184625_102077171	3300018081	Groundwater Sediment	DLHRLADAVTREKTRIDENVRARLSWDRDPPVLPSEQRKLADVVVEVLAKPRLSSSQSRQLQRVFFGK
Ga0184625_105659201	3300018081	Groundwater Sediment	VSIDDAKFQSLLEQVRELHRLADEVTRESTRIHANVRARLSWDRDPPALPRAQREIADAVVDVLGTSRLSSTQSRQLQRAFFRR
Ga0190275_123962902	3300018432	Soil	VSIDDVQFQTLLEQVRELHQLADELTSSARIHENVRARLNWSLEPPVLPPDQRELADKIVELLEQTRLS
Ga0190268_101957692	3300018466	Soil	MPINDEQFESLLEQVRDLHRRADEITQESSRLRANVQARLSWERNPPPLPSAQREIADEVVEILARPRLSSSQSRALQRAFFGRR
Ga0190268_116729481	3300018466	Soil	VSIDDAKFQSLLEQVRDLHRLADEVTRESTRIHANVRARMSWDRNPPSLPAEQRKLADEVVETLSNPRLSSSQARVLQRAFFGR
Ga0190270_100924734	3300018469	Soil	VPVNDEQFQSLLEQVRDLHQLADEISREKVRFDAHVRARLIWDDRKAPPLPRDQRDLADVVVDVLSKPRLSSSQSRQLYRVFFGR
Ga0190270_100961543	3300018469	Soil	VPVDDEQFQSLLEQVRDLHRLADELSREKVRFDAHVRARLRWDERNAPHLPAGQRDLADEVVDVLSRPRLSSSQSRQLYRVYFGR
Ga0190270_105849642	3300018469	Soil	MSVDDPQFQSLLEQVRELHRLADEVTRESSRIHANVRARMSWDRNPPTLPPEQRKLADEALEALSTPRLSSSQARVLQRAFFGR
Ga0190270_108086153	3300018469	Soil	VVLPDGMPINDEQFESLLEQVRDLHRRADEITQESSRLRANVQARLSWERNPPPLPSAQREIADEVVEILARPRLSSSQSRALQRAFFGRR
Ga0190270_109859662	3300018469	Soil	VPVNDGQFQSLLDQVQELHRLADEISREKVRFDAHVRARLSWDDANAPPLPAGQRDLADEVVDVLSKSRLSSSQSRQLHRVFFGR
Ga0190270_111690911	3300018469	Soil	MDEGQFESLLDQVRELHRIADEVTREKVRFDAYVRARLSWDDRNAPPLPQAQRELADEVVEALSKPRLSSTQSRQLYRTFFGTKGR
Ga0190270_114553301	3300018469	Soil	MEWVPLNEEKFQSLLEQVRELHRLADEATRERARFDAYVQARLRWDDGNAPVLPAAQRDLADEAVEALSKPRLSTMQSRQLYRAFFRKSRR
Ga0190271_130052031	3300018481	Soil	DVPVDDEQFQSLLEQVRDLHRLADELMREKVRFDANVRARLSWDERNAPPLPPGQRDLAEKVVDVLSKPRLSSSQSRQLYRAFFGR
Ga0173481_104364221	3300019356	Soil	VEDAPFESLFEQVRELHRLADELTRDKSRLEENVRARLRWDDRSAPSLPGPQREIADQAVEILSKPRMSSQSKALYRAFFGR
Ga0190267_111538892	3300019767	Soil	VPVDDQQFQSLLEQVRDLHRLADDLTKEKARIDAHVRARLRWDDRNAPPLSRGHRDLADQVVDVLSKPRLSSWQSRQLYRIYFGR
Ga0193741_11292202	3300019884	Soil	WWEALAHPRRTASEDPGAGMVSRRSYPWPVVPIADEEFQSLLEQVRDLHRLADEVTRESTRIHANVRARLNWDRNPPVLPSEQRKLADQVVEALNTPRLSSRQSEKLYRVYFGR
Ga0193696_10445342	3300020016	Soil	VPIADEEFQSLLEQVRDLHRLADEVTRESTRIHANVRARLNWDRNPPVLPTEQRKLADQVVEALNTPRLSSWQSEQLFRVYFGR
Ga0193738_10492182	3300020020	Soil	VAIDNVQFQTLLEQVRELHQLADELTHSSTRIHANVRARLNWDQPPVLPPEQRKVADEVVEVLEKPRLSSSQSRQLQRAFFGK
Ga0180107_10350951	3300020064	Groundwater Sediment	MAVGISDEHFETLLEQVHDLHRLADEVTRERARIDANVRARLSWGRDVPPLPPEQRKVADEAVEALSKSRLSSSQSRQLHRAFFGR
Ga0210380_101511421	3300021082	Groundwater Sediment	VPIADEEFRSLLDQIRDLHRLADEVTRERARIHANVRARLSWDRNAPVLPPEQRALADEVVEVLAKTRLSSTQS
Ga0222622_102305121	3300022756	Groundwater Sediment	FQSLLEQVRDLHRLADEVTREKTRIDENVRARLSWDRNPPVLPAEQRKLADEVVEVLAKPRLSWSQSRLLQQAFFGR
Ga0222622_111319121	3300022756	Groundwater Sediment	VPIADEEFQSLLEQVRDLHRHVDEVTRESTRLHENVRARLSWNRNPPVLPTEQRKLADEVVEVLAKPRLSSSQSRRLQQAFFGR
Ga0247788_10035913	3300022901	Soil	VTELHRLADEITLESNRLHANVRARLSWDRDAPPLPPEQRKIADEAVDVLSTPRLSSAQSRLLQRAFFGR
Ga0247789_10060444	3300023266	Soil	VFQSLLEQVTELHRLADEITLESNRLHANVRARLSWDRDAPPLPPEQRKIADEAVDVLSTPRLSSAQSRLLQRAFFGR
Ga0210113_10377821	3300025796	Natural And Restored Wetlands	MEGEKFESLLDQVRELHRLADELSRERSKFNAHVRARLIWDDQNAPPLPPRQRNLADEVVEALSKARLTTAQSRQLYRVFFGSGRR
Ga0207687_117232452	3300025927	Miscanthus Rhizosphere	VPIADEEFQSLLDQVRDLHRLADEVTREKTRIDENVRARLSWDPDPPVLPSEQRKLADEVVEVLAKPRLSSSQSRQ
Ga0207669_101299471	3300025937	Miscanthus Rhizosphere	VPIADEEFQSLLDQVRDLHRLADEVTREKTRIDENVRARLSWDRNPPVLPAEQRKLADDVVEVLAKPRLSSSQSRQLHRAFFRR
Ga0207981_10075233	3300027560	Soil	VPVDDIQFQSLLEQVRELHRVADDLTRESTRIHANVRARLAWDRNPPSLPAGQRRLADEVVEILEKPRLSSSQSRRLQRAFFGR
Ga0208612_10019579	3300027638	Polar Desert	VTVDDVQFQSLLEQVRELHELADELTRSPARIHENVRARLSWNEPPTLPPEQTKLADEAVEMLGLPRLSPSQARQLQQAFFGR
Ga0256866_10985732	3300027650	Soil	MDDEGFETLLQQVRALHRLADEVTRERARIDANVRARLSWNRDAPPLPPEQRKVADEAVEALSKSRLSSSQSRQLHRAFFGR
Ga0209382_112999811	3300027909	Populus Rhizosphere	VPVDDDQFQSLLEQVQELHRIADEISREKVRFDAHVRARLSWDDRNAPPLPREQRDLADEVVELLSKPRLSSSQSRQLHRVFFGR
Ga0247821_108039192	3300028596	Soil	VTELHRVADEITLESNRLHANVRARLSWDRDAPPLPPEQRKIADEAVDVLSTPRLSSAQSRLLQRAFFGR
Ga0307318_102875991	3300028744	Soil	GRTCPGDGVPWPVVPIADEEFQSLLDQVRDLHRLADAVTREKTRIDENVRARLSWDRNPPVLPSEQRKLADEVVEVLAKPRLSSSQSRQLQRVFFGK
Ga0307280_101490561	3300028768	Soil	VRRPAGRAGALALSQYRSGLVPVDDTQFQSLLEQVRELHRVADELTRESTRIHANVRARLAWERNPPPLPADQRKLADEVVEILAKPRLSSSQARRLQRAFFRR
Ga0307320_102491171	3300028771	Soil	VSIDDPQFQSLLEQVRDLHRLADEVTRESSRIHANVRARMSWDRNPPTLPPEQRKVADDVVEALSTPRLSSSQSRLLKRAFFGR
Ga0307306_100269442	3300028782	Soil	VRRPAGRAGALALSQYRSGFVPVDDTQFQSLLEQVRELHRVADELTRESTRIHANVRARLAWERNPPPLPADQRKLADEVVEILAKPRLSSSQARRLQRAFFRR
Ga0307292_100928474	3300028811	Soil	VPIADEVFQSLLEQVRDLHRHADEVTRESTRLHENVRARLSWNRNPPVLPTEQRKLADEVVEVLAKPRLSSSQSRRLQQAFFGR
Ga0307286_100614042	3300028876	Soil	GDGVPWPVVPIADEEFQSLLDQVRDLHRLADAVTREKTRIDENVRARLSWDRNPPVLPSEQRKLADEVVEVLAKPRLSSSQSRQLQRVFFGK
Ga0307286_102492332	3300028876	Soil	VDDAPFQSLLDQVRELHRLSDELTRQNSRLHANVRARLSWDRDPPSLPPEQREIADEIVEILAKPQLSSSQSRQLQRAFFGK
Ga0307278_100256496	3300028878	Soil	VAIDDAPFQALLEQVRELHRLSDELTRQNTRIHANVRARLSWDRNPPSLPAEQRAIADEVVEILAKPRLSSSQSRQLQRAFFGK
Ga0307277_102398083	3300028881	Soil	VPDVAVDDAQFQSLLEQVRELHRLADEVTRETTRIQANVRARLSWDLNPPPLPHVQRRIADEAVEILAKPKLSSSQS
Ga0247827_110707592	3300028889	Soil	KHTEYLFGIDEEAFQSLLEQVTELHRLADEITLESNRLHANVRARLSWDRDAPPLPPEQRKIADEAVDVLSTPRLSSAQSRLLQRAFFGR
Ga0247827_110902541	3300028889	Soil	YQGGVPIDDEEFESLLEQVRGLHRQADKITRETGRLQANVQARLSWERDPPPLPPAQREIADEAIELLGQRQLSSTQSRALRRAFFGRR
Ga0299907_101808183	3300030006	Soil	VAVDDVQFQELLDQVRELHQLADELTRSSTRIHENVRARLAWSQEPPTLPAEQSELADKIVELLEQKRLSSSQARQLQRAFFGT
Ga0268386_110232022	3300030619	Soil	LAWRGTVHWVVAVDDVQFQELLDQVRELHQLADELTRSSTRIHENVRARLAWSQEPPTLPAEQRELADKIVELLEQKRLSSSQARQLQRAFFGT
Ga0308206_10553312	3300030903	Soil	VCRVVSIDDPQFQSLLEQVRDLHRLADEVTRESSRIHANVRARMSWDRNPPTLPPEQRKVADDVVEALSTPRLSSSQSRLLQRAFFGR
Ga0307498_100165883	3300031170	Soil	VTARRISARRDRRDVPLPRVAVDDVQFQSLLEQVRELHRLADEVTRESTRIHANVRARLVWDPRPPPLPQEQREIADEAVEILAKPKLSSSQSRQLHRAFFGR
Ga0307498_100455922	3300031170	Soil	VTARRISAWRHRRDVPLPRVAVDDVQFQSLLEQVRELHRLADEVTRESTRIHANVRARLVWDPRLPPLPQEQREIADEAVEILAKPKLSSSQSRQLHRAFFGR
Ga0307498_101474911	3300031170	Soil	MDEGQFESLLDQVRELHQLADRVTREKVRFDAYVRARLSWDDRNAPPLPQVQRELADEVVEVLSKPRLSSTQSRQLYRAFFG
Ga0310887_108178402	3300031547	Soil	VTELHRLADEITLESNRLHANVRARLSWDRDAPPLPPEQRKIADEAVDVLSTPRLSSAQSRLLQRAFF
Ga0310904_109615692	3300031854	Soil	MPVDEEQFESLLEQVRDLHRQADKITRETTRLQANVQARLSWERDPPPLPAAQREIADEAIEILGRRELSPAQSGALRRAFFGRR
Ga0310892_104123982	3300031858	Soil	MPVDEEQFESLLEQVRDLHRQADKITRETTRLQANVQARLSWERDPPPLPAAQREIADEAIEILGRRELSPAQSGAL
Ga0310890_108313461	3300032075	Soil	HTEYLFGIDEEAFQSLLEQVTELHRLADEITLESNRLHANVRARLSWDRDAPPLPPEQRKIADEAVDVLSTPRLSSAQSRLLQRAFFGR
Ga0247829_114011751	3300033550	Soil	VPLDEEKFQSLLEQVRELHRLADEATRERARFDAYVQARLRWDDRTAPALPAAQRDLADQAVDALSRPRLSTLQSRQVYRAFFGKSPR
Ga0364924_021255_799_1050	3300033811	Sediment	MPLDDVEFQSLLEQVRELHQLADDLTHSPRLHANIRARLNWDTQPPALPQEQKKLADEVVKVLAKTRLSSSQSRRLQRAFFGK
Ga0370546_006843_75_362	3300034681	Soil	VLALSQYRSGLVPVDDTQFQSLLEQVRELHRVADELTRESTRIHANVRARLAWDRNPPPLPADQRKLADEVVEILAKPRLSSSQARRLQRAFFRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055704

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences