Metagenome / Metatranscriptome Family F055623

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055623
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	64 residues
Representative Sequence	MATDTGYTLDQFLADTRATIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERTTIGHD
Number of Associated Samples	117
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.93 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	94.93 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.130 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (10.145 % of family members)
Environment Ontology (ENVO)	Unclassified (28.986 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (34.058 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.16% β-sheet: 0.00% Coil/Unstructured: 54.84%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF07690	MFS_1	22.46
PF00296	Bac_luciferase	21.01
PF04909	Amidohydro_2	5.07
PF01243	Putative_PNPOx	4.35
PF00903	Glyoxalase	3.62
PF01741	MscL	3.62
PF00248	Aldo_ket_red	3.62
PF04264	YceI	2.90
PF02771	Acyl-CoA_dh_N	2.17
PF01557	FAA_hydrolase	1.45
PF12697	Abhydrolase_6	1.45
PF00561	Abhydrolase_1	0.72
PF03450	CO_deh_flav_C	0.72
PF02335	Cytochrom_C552	0.72
PF13649	Methyltransf_25	0.72
PF00330	Aconitase	0.72
PF03243	MerB	0.72
PF03446	NAD_binding_2	0.72
PF01850	PIN	0.72
PF03992	ABM	0.72
PF07908	Obsolete Pfam Family	0.72
PF16868	NMT1_3	0.72
PF01738	DLH	0.72
PF16326	ABC_tran_CTD	0.72
PF00078	RVT_1	0.72
PF01979	Amidohydro_1	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	21.01
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	3.62
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	2.90
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	2.17
COG3303	Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit	Inorganic ion transport and metabolism [P]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.13 %
Unclassified	root	N/A	10.87 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.13 %
Unclassified	root	N/A	10.87 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.13 %
Unclassified	root	N/A	10.87 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	29.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	15.22 %
Unclassified	root	N/A	10.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	29.71 %
Unclassified	root	N/A	10.87 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10.14 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	29.71 %
Unclassified	root	N/A	10.87 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	8.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	0.72 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	28.99 %
Unclassified	root	N/A	10.87 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	5.07 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.72 %
Candidatus Competibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae	0.72 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.72 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	26.81 %
Unclassified	root	N/A	10.87 %
Ferrovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Ferrovibrio	5.07 %
Candidatus Rokubacteria bacterium GWA2_70_23	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium GWA2_70_23	2.17 %
Caballeronia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	0.72 %
Plasticicumulans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Plasticicumulans	0.72 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.72 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	26.81 %
Unclassified	root	N/A	10.87 %
Ferrovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Ferrovibrio	5.07 %
Candidatus Rokubacteria bacterium GWA2_70_23	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium GWA2_70_23	2.17 %
Caballeronia arationis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia arationis	0.72 %
Plasticicumulans lactativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Plasticicumulans → Plasticicumulans lactativorans	0.72 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.72 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725002\|GPICC_F5MS3JC01BF6R3	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300000443\|F12B_10150553	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	523	Open in IMG/M
3300000443\|F12B_10625472	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300000550\|F24TB_10399495	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	518	Open in IMG/M
3300000550\|F24TB_10559804	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	884	Open in IMG/M
3300002122\|C687J26623_10145806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Ferrovibrio	652	Open in IMG/M
3300002912\|JGI25386J43895_10080786	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	870	Open in IMG/M
3300003994\|Ga0055435_10106847	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	745	Open in IMG/M
3300004157\|Ga0062590_102398438	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	557	Open in IMG/M
3300004281\|Ga0066397_10109224	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	590	Open in IMG/M
3300004633\|Ga0066395_10780466	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300005172\|Ga0066683_10059490	All Organisms → cellular organisms → Bacteria	2269	Open in IMG/M
3300005187\|Ga0066675_10588773	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300005205\|Ga0068999_10003386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1735	Open in IMG/M
3300005289\|Ga0065704_10513322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Ferrovibrio	659	Open in IMG/M
3300005294\|Ga0065705_10979916	Not Available	553	Open in IMG/M
3300005295\|Ga0065707_10816968	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium GWA2_70_23	590	Open in IMG/M
3300005332\|Ga0066388_103524977	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	799	Open in IMG/M
3300005332\|Ga0066388_106431054	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	592	Open in IMG/M
3300005338\|Ga0068868_100494570	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300005353\|Ga0070669_100580671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	937	Open in IMG/M
3300005439\|Ga0070711_101175913	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300005458\|Ga0070681_11232972	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	670	Open in IMG/M
3300005549\|Ga0070704_100787140	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	849	Open in IMG/M
3300005552\|Ga0066701_10641586	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	643	Open in IMG/M
3300005553\|Ga0066695_10193730	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1274	Open in IMG/M
3300005577\|Ga0068857_101517877	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300005598\|Ga0066706_10725720	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	789	Open in IMG/M
3300005718\|Ga0068866_11253559	All Organisms → cellular organisms → Bacteria → Proteobacteria	537	Open in IMG/M
3300005764\|Ga0066903_102455454	Not Available	1009	Open in IMG/M
3300005764\|Ga0066903_106996392	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	585	Open in IMG/M
3300005843\|Ga0068860_100779357	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300005876\|Ga0075300_1029029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Ferrovibrio	736	Open in IMG/M
3300005937\|Ga0081455_10901352	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300006791\|Ga0066653_10116017	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300006846\|Ga0075430_100677617	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	850	Open in IMG/M
3300006852\|Ga0075433_10075983	All Organisms → cellular organisms → Bacteria → Proteobacteria	2957	Open in IMG/M
3300006852\|Ga0075433_11770789	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300006853\|Ga0075420_101027137	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	709	Open in IMG/M
3300009078\|Ga0105106_11238303	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300009089\|Ga0099828_11544815	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	585	Open in IMG/M
3300009093\|Ga0105240_10749248	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300009156\|Ga0111538_14152029	Not Available	500	Open in IMG/M
3300009802\|Ga0105073_1062133	Not Available	521	Open in IMG/M
3300009806\|Ga0105081_1073674	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	540	Open in IMG/M
3300009811\|Ga0105084_1112983	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	520	Open in IMG/M
3300009812\|Ga0105067_1060724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	619	Open in IMG/M
3300009816\|Ga0105076_1044921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	795	Open in IMG/M
3300010048\|Ga0126373_12412821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	586	Open in IMG/M
3300010323\|Ga0134086_10431121	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	535	Open in IMG/M
3300010329\|Ga0134111_10155644	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	907	Open in IMG/M
3300010359\|Ga0126376_10194682	All Organisms → cellular organisms → Bacteria	1673	Open in IMG/M
3300010360\|Ga0126372_12668216	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	551	Open in IMG/M
3300010373\|Ga0134128_10517261	All Organisms → cellular organisms → Bacteria	1330	Open in IMG/M
3300010391\|Ga0136847_12029715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Ferrovibrio	689	Open in IMG/M
3300010397\|Ga0134124_10846977	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	917	Open in IMG/M
3300010398\|Ga0126383_10199971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1918	Open in IMG/M
3300010400\|Ga0134122_10667690	Not Available	971	Open in IMG/M
3300010400\|Ga0134122_12871667	Not Available	535	Open in IMG/M
3300010401\|Ga0134121_10173358	All Organisms → cellular organisms → Bacteria	1852	Open in IMG/M
3300011119\|Ga0105246_11288868	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300012173\|Ga0137327_1122366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Plasticicumulans → Plasticicumulans lactativorans	575	Open in IMG/M
3300012201\|Ga0137365_10801135	Not Available	688	Open in IMG/M
3300012203\|Ga0137399_10546520	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300012206\|Ga0137380_11733081	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	508	Open in IMG/M
3300012358\|Ga0137368_10114572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia arationis	2058	Open in IMG/M
3300012362\|Ga0137361_11551666	Not Available	584	Open in IMG/M
3300012362\|Ga0137361_11797141	Not Available	531	Open in IMG/M
3300012363\|Ga0137390_11330244	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300012493\|Ga0157355_1024064	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	587	Open in IMG/M
3300012917\|Ga0137395_10144154	All Organisms → cellular organisms → Bacteria → Proteobacteria	1625	Open in IMG/M
3300012918\|Ga0137396_10918525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Ferrovibrio	640	Open in IMG/M
3300012922\|Ga0137394_10564587	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	964	Open in IMG/M
3300012923\|Ga0137359_11796012	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300012929\|Ga0137404_10906319	Not Available	804	Open in IMG/M
3300012948\|Ga0126375_10988570	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	684	Open in IMG/M
3300012971\|Ga0126369_10192775	All Organisms → cellular organisms → Bacteria	1958	Open in IMG/M
3300012971\|Ga0126369_13335509	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300014150\|Ga0134081_10285453	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	588	Open in IMG/M
3300014154\|Ga0134075_10226092	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	807	Open in IMG/M
3300014745\|Ga0157377_11687647	Not Available	510	Open in IMG/M
3300015374\|Ga0132255_103656678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	654	Open in IMG/M
3300016270\|Ga0182036_11763329	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	523	Open in IMG/M
3300016341\|Ga0182035_10805460	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300017961\|Ga0187778_10196833	All Organisms → cellular organisms → Bacteria	1283	Open in IMG/M
3300017997\|Ga0184610_1035892	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300017997\|Ga0184610_1277742	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300018056\|Ga0184623_10192023	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300018059\|Ga0184615_10582719	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300018074\|Ga0184640_10126374	Not Available	1128	Open in IMG/M
3300018074\|Ga0184640_10408259	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300018422\|Ga0190265_11938580	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300019279\|Ga0184642_1693583	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300019487\|Ga0187893_10827970	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300019886\|Ga0193727_1063142	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300021080\|Ga0210382_10027317	All Organisms → cellular organisms → Bacteria → Proteobacteria	2118	Open in IMG/M
3300022563\|Ga0212128_10481311	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300025324\|Ga0209640_10246156	All Organisms → cellular organisms → Bacteria	1508	Open in IMG/M
3300025922\|Ga0207646_11295811	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300025923\|Ga0207681_11160604	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300025942\|Ga0207689_10219569	All Organisms → cellular organisms → Bacteria	1570	Open in IMG/M
3300025961\|Ga0207712_10901327	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300025961\|Ga0207712_12005462	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	518	Open in IMG/M
3300026015\|Ga0208286_1000521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1673	Open in IMG/M
3300026118\|Ga0207675_101232296	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium GWA2_70_23	768	Open in IMG/M
3300026328\|Ga0209802_1008802	All Organisms → cellular organisms → Bacteria	6103	Open in IMG/M
3300026482\|Ga0257172_1030448	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300026497\|Ga0257164_1094851	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	513	Open in IMG/M
3300026540\|Ga0209376_1093833	All Organisms → cellular organisms → Bacteria	1557	Open in IMG/M
3300027722\|Ga0209819_10013951	All Organisms → cellular organisms → Bacteria	2624	Open in IMG/M
3300027903\|Ga0209488_10600691	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300027961\|Ga0209853_1089745	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300027964\|Ga0256864_1196838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Ferrovibrio	576	Open in IMG/M
3300027979\|Ga0209705_10149627	All Organisms → cellular organisms → Bacteria	1249	Open in IMG/M
3300028381\|Ga0268264_10232014	All Organisms → cellular organisms → Bacteria	1705	Open in IMG/M
3300028592\|Ga0247822_10929453	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300028592\|Ga0247822_11176497	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium GWA2_70_23	639	Open in IMG/M
3300028807\|Ga0307305_10053266	All Organisms → cellular organisms → Bacteria	1863	Open in IMG/M
3300030006\|Ga0299907_10968610	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1057443	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300031538\|Ga0310888_10357193	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300031740\|Ga0307468_100435773	Not Available	1015	Open in IMG/M
3300031740\|Ga0307468_101113065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Ferrovibrio	705	Open in IMG/M
3300031740\|Ga0307468_101191678	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	686	Open in IMG/M
3300031740\|Ga0307468_101627087	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300031740\|Ga0307468_102558361	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300031820\|Ga0307473_10196706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1193	Open in IMG/M
3300031820\|Ga0307473_10753697	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	689	Open in IMG/M
3300031831\|Ga0318564_10403386	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	598	Open in IMG/M
3300031949\|Ga0214473_10203474	All Organisms → cellular organisms → Bacteria	2291	Open in IMG/M
3300031949\|Ga0214473_11079929	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300031949\|Ga0214473_11102962	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300032122\|Ga0310895_10100169	All Organisms → cellular organisms → Bacteria → Proteobacteria	1179	Open in IMG/M
3300032174\|Ga0307470_10340405	Not Available	1036	Open in IMG/M
3300032179\|Ga0310889_10428018	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	661	Open in IMG/M
3300032180\|Ga0307471_100482688	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1384	Open in IMG/M
3300032180\|Ga0307471_101747974	Not Available	775	Open in IMG/M
3300032180\|Ga0307471_103792732	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.06%
Host-Associated	Host-Associated	15.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.46%
Plants	Host-Associated → Plants	15.94%
Aquatic	Environmental → Aquatic	11.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.25%
Sediment	Environmental → Aquatic → Sediment	5.07%
Freshwater	Environmental → Aquatic → Freshwater	4.35%
Marine	Environmental → Aquatic → Marine	1.45%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.72%
Cave	Environmental → Terrestrial → Cave	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.90%
Loam	Environmental → Terrestrial → Soil → Loam	11.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.25%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.07%
Sand	Environmental → Terrestrial → Soil → Sand	5.07%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.17%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.45%
Lake	Environmental → Aquatic → Freshwater → Lake	0.72%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.72%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.07%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	5.07%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.35%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.62%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.62%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.90%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.17%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.17%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.45%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.45%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.72%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.72%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.14%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.07%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.35%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.62%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.62%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.17%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.17%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.45%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.45%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.45%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.45%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.72%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.72%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.72%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.72%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.72%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.72%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.72%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725002	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300002122	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005205	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005876	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009802	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60	Environmental	Open in IMG/M
3300009806	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009812	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012173	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012493	Unplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022563	OV2_combined assembly	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026015	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401 (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027964	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111 HiSeq	Environmental	Open in IMG/M
3300027979	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICC_03144300	2067725002	Soil	TMAVTTTYSLDQFLADTRATIRAKGVPAGLAEIRSHLEKLLHNPDLLTTHLGDRSLHRARDHRP
F12B_101505531	3300000443	Soil	MATDTGYTLDQFLADTRATIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPHRERTTIGHDPETDVHVL
F12B_106254721	3300000443	Soil	MATETTTYRLDQFFADTRATIKAKGVPSGLAEVRDHLEKLLRNPELLKKHLGDPVPYKERTTIGHDP
F24TB_103994951	3300000550	Soil	MATDAGYTLDQFLADTRATIKAKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERTTIGQDPETDVHV
F24TB_105598042	3300000550	Soil	MATDTGYTLDQFLADTRATIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERTTIGHDP
C687J26623_101458061	3300002122	Soil	MDTTYSLDQFLADTRATIKAKGIPGGLAEVRDHLEKLLHNPELLKKHLGDPVPYVERATIGHDP
JGI25386J43895_100807861	3300002912	Grasslands Soil	MDTGYTLDQFLADTRATIKTKGVPSGLAEIRDHLENLLRNPELLKKHLGEPVPY
Ga0055435_101068472	3300003994	Natural And Restored Wetlands	MGTETTYTLDQFLADTRASIKTKGVPSGLAEIRDHLEKLLHNPELLKKHLGDPPPYTQLTTIGHDP
Ga0062590_1023984382	3300004157	Soil	VTTEPTTYSLDQFFSDTRATIRNKGIPSGLAEIREHLEKLLHNPELLKKHLGDPVPYAERTTIGHDPETDV
Ga0066397_101092242	3300004281	Tropical Forest Soil	MATDAGYTLDQFLADTRATIKAKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERTTIGHDP
Ga0066395_107804661	3300004633	Tropical Forest Soil	MATDTAYTLDQFLADTRATIKTKGVPTGLAEIRDHLEKLLHNPELLRKHLGDPVPYTE
Ga0066683_100594904	3300005172	Soil	MATATAYTLDQFLADTRATIKTKGIPAGLAEVRDHLEKLLHNPELLKKHLGDPPPYAERATIGHDPETDVHV
Ga0066675_105887732	3300005187	Soil	METVTTYTLDQFLADTRATIETKGIPAGLAEIRDHLERLLRNPDLLKKHLGDSVPY
Ga0068999_100033863	3300005205	Natural And Restored Wetlands	MDTTYSLDQFLADTRATIQTRGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPYVERATIGHDPE
Ga0065704_105133221	3300005289	Switchgrass Rhizosphere	MDTTYSLDQFLADTRTTIQTKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPYVERATIGHDPETD
Ga0065705_109799162	3300005294	Switchgrass Rhizosphere	MDTTYSLDQFLADTRSTIQTKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPYVERATI
Ga0065707_108169682	3300005295	Switchgrass Rhizosphere	MATETTTYTLDQFFADTRATIKAKGVPSGLAEVRDHLEKLLRNPELLKKHLGDPVPYKERTT
Ga0066388_1035249771	3300005332	Tropical Forest Soil	MTTTTETYTVQQFLADTRATIKSKGVPHGLAEVRGHLERLLANPELLKEHLGDPPRFSERATIGYDPETDVHVL
Ga0066388_1064310541	3300005332	Tropical Forest Soil	MATDAGYTLDQFLADTRATIKAKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPV
Ga0068868_1004945701	3300005338	Miscanthus Rhizosphere	MGTDTGYTPDQFLADTRTTIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERTTIGHDPET
Ga0070669_1005806711	3300005353	Switchgrass Rhizosphere	MASETTYSLDQFLADTRATIKSKGIPAGLAEIRDHLEKLLANPELLTKHLGDPVPYSERTTIGH
Ga0070711_1011759132	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	METNYSLDQFLADTRATIKTRGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPHVERTTIGHDP
Ga0070681_112329722	3300005458	Corn Rhizosphere	MATDAGYTLDQFLADTRATIKAKGVPSGLAEIRDHLEKLLLNPELLKKHLGDPVPHRERTTIGHDPET
Ga0070704_1007871401	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MGTDTGYTLDQFLADTRTTIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERT
Ga0066701_106415862	3300005552	Soil	MDTGYTLDRFFADTRATIKTKGIPSGLVEIRDHLENLLRNPELLKKHLGEPVSYKERTTIGHDP
Ga0066695_101937302	3300005553	Soil	MSTETGYTLDQFLADTRATIKTKGIPSGLAEIRDHLERLLHNPELLKKHLGDPVPYRERTTIGHDPETD
Ga0068857_1015178771	3300005577	Corn Rhizosphere	MAVTAHYSLDQFLADTRATIKSKGVPSGLAEIRDHLEKLLANPELLTKHLGDPVPYAE
Ga0066706_107257202	3300005598	Soil	MAADTAYTLDQFLSDTRATIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVP
Ga0068866_112535591	3300005718	Miscanthus Rhizosphere	MATVTTYSLDQFLADTRATIKSKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPHVE
Ga0066903_1024554543	3300005764	Tropical Forest Soil	MGTDTTYSLDQFLADTRATIKTKGIPTGLAEIRDHLERLLHNPDLLKKHLGDPVPYTERTTI
Ga0066903_1069963922	3300005764	Tropical Forest Soil	MTAITTTYTLDQFLSDTRATIQKKGIPSALAEVREHLEKLLHNPDLLKKHLGDPVPYTERATIGHDPETDVH
Ga0068860_1007793572	3300005843	Switchgrass Rhizosphere	MATDAGYTLDQFLADTRATIKAKGVPSGLAEIRDHLEKLLLNPELLKKHLGDPVP
Ga0075300_10290292	3300005876	Rice Paddy Soil	MGTDTSYSLDQFLADTRATIQTKGIPAGLAEVRDHLEKLLHNPELLKKHLGDPVPYVERA
Ga0081455_109013521	3300005937	Tabebuia Heterophylla Rhizosphere	MATPTSYSLDQFLADTRATIKTKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPHLERTTIGHDP
Ga0066653_101160172	3300006791	Soil	MTETTGYTLDQFLADTRATIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPV
Ga0075430_1006776171	3300006846	Populus Rhizosphere	MITDTTYTLDQFLADTRATIEKKGIPSGLAEIREHLEKLLHNPALLTKHLGDPVPYAERTTIGH
Ga0075433_100759834	3300006852	Populus Rhizosphere	MATVTTYSLDQFLADTRATIKSKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPV
Ga0075433_117707892	3300006852	Populus Rhizosphere	MATETIYTLDQFLADTRATIRTKGVPAGLAEVRDHLEKLLHNPELLTKHLGDPVPYTE
Ga0075420_1010271372	3300006853	Populus Rhizosphere	MTTETTTYSLDQFLADTRATIKTKGVPSGLAEIRDHLEKLLHNPELLKKHLGDPVPYTERATIGHDPETDVHV
Ga0105106_112383032	3300009078	Freshwater Sediment	MHTTYSLDQFLADTRATIQTKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPYVERA
Ga0099828_115448151	3300009089	Vadose Zone Soil	MGTDTTYTLDQFLADTRATIKTKGVPTGLAEIRDHLEKLLHNPELLKKHLGDPVPYCERTTI
Ga0105240_107492482	3300009093	Corn Rhizosphere	MATVTTYSLDQFLADTRATIKSKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPHV
Ga0111538_141520291	3300009156	Populus Rhizosphere	MSPAETPASRKESAMAMDSTYSLDQFLLDTRATIQTKGIPSGLAEIRGHLERLLHNPELLTKHLGDPVPYRERTTIGQD
Ga0105073_10621331	3300009802	Groundwater Sand	MSTETTYSLDQFLADTRATIKAKGIPSGLAEIRDHLERLLANPELLTKHLGDPVPHAER
Ga0105081_10736741	3300009806	Groundwater Sand	MGTGYTLDQFLADTRATIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYKERTTIGHDPETDVH
Ga0105084_11129833	3300009811	Groundwater Sand	MARETAYTLDQFLADTRATIKTKGMPAGLAEIREHLEKLLHNPELLKKHLGDPVPYTER
Ga0105067_10607241	3300009812	Groundwater Sand	MDTTYSLDQFLADTRTTIQTKGIPAGLAEIRDHLEKLLHNPELFKKHLGDPVLYVERAIIGHDPET
Ga0105076_10449211	3300009816	Groundwater Sand	MSTDTAYTLDQFFADTRETIKTKGVPSGLAEIREHVEKLLRNPELLKKHLGDPVPYKERTTIGHDPET
Ga0126373_124128212	3300010048	Tropical Forest Soil	MSVATTYSLDQFLADTRATIKSKGIPAGLAEIRDHLEKLLHNPDLLKKHLGDPLPHVERATIGHDPE
Ga0134086_104311211	3300010323	Grasslands Soil	MATATAYTLDQFLADTRATIKTKGIPAGLAEVRDHLEKLLRNPELLKKHLGDPTPYAERA
Ga0134111_101556442	3300010329	Grasslands Soil	MATENGYTLDQFLADTRATIKAKGVPSGLAEIRDHVEKLLRNPELLTKHLGDPVPYRERTTIGHD
Ga0126376_101946823	3300010359	Tropical Forest Soil	MATDTAYTLDQFLADTRTTIKSKGVPSGLAEIRDHLEKLLRNPDLLKKHLGDPVPYTERTTIG
Ga0126372_126682162	3300010360	Tropical Forest Soil	MIPSSGEEDPMTTDTSYTLDQFFADTRATIKGKGVPAGLAEIRGHLERLLHNPELLKKHMGDPVPYTER
Ga0134128_105172612	3300010373	Terrestrial Soil	MATVTTYRLDQFLADTRATIKSKGIPAGLAESRDHLEKLLHNPELLKKHLGDPVPHVERATIGHDP
Ga0136847_120297152	3300010391	Freshwater Sediment	MNTTYSLDQFLADTRTTIQTKGIPAGLAEIRDHLEKLLHNPELLTKHLGDPVPYVERAY
Ga0134124_108469771	3300010397	Terrestrial Soil	MGTDTGYTLDQFLADTRTTIKTKGVPSGLAEIRDHLEKLLHNPELLKKHLGDPVPYRERTTIAHDPETDVHVL
Ga0126383_101999713	3300010398	Tropical Forest Soil	MATDTAYTLDQFLADTRATIKSKGVPSGLAEIRDHLEKLLRNPDLLKKHLGDPVPYTERT
Ga0134122_106676902	3300010400	Terrestrial Soil	MATETTQYTLDQFLSDTRTTIRTKGIPSGLAEIREHLEKLLHNPELLKKHLGDPVPYAERTTIGHDPE
Ga0134122_128716671	3300010400	Terrestrial Soil	MTTTTETYNVQQFLTDTRATIESKGLPHGLAEIRGHLERLLANGELLREYLGDPARYPERATLGYDPDTD
Ga0134121_101733584	3300010401	Terrestrial Soil	MAVTAPYSLDQFLADTRATIKTKGVPSGLAEIRDHLEKLLANPELLTKHLGDPVPYAERTTIGHDPE
Ga0105246_112888681	3300011119	Miscanthus Rhizosphere	MAVTTHYSLDQFLADTRATIKTKGVPSGLAEIRDHLEKLLANPELLTKHLGDPVPYA
Ga0137327_11223661	3300012173	Soil	MSTTTAYTLDQFLADTRATIKAKGIPSGLAEIRDHLEKLLANPDLLTTHLGDPVPHLERTTIGQDPE
Ga0137365_108011352	3300012201	Vadose Zone Soil	MATATAYTLDQFLADTRATIKTKGIPAGLAEVRDHLEKLLHNPELLKKHLGDP
Ga0137399_105465201	3300012203	Vadose Zone Soil	MDTTYSLDQFLADTRATIQTKGIPAGLAEIRDHLEKLLHNPELLTKHLGDPVPYRERTT
Ga0137380_117330811	3300012206	Vadose Zone Soil	MDTGYTLDRFFADTRATIKTKGIPSGLVEIRDHLENLLRNPELLKKHLGEPVSY
Ga0137368_101145721	3300012358	Vadose Zone Soil	MDTGYTLDQFFADTRATIKTKGIPSGLAEIRDHLENLLRNPELLKKHLGEPVPYKERTTI
Ga0137361_115516661	3300012362	Vadose Zone Soil	MATDTAYTLDQFLAATRATIRAKGIPAGLAEIRDHVEKLLHNPELLKKHLGEPAPY
Ga0137361_117971412	3300012362	Vadose Zone Soil	MTTIADTYTVQQFLADARATIKIKGVPHGLAEVRGHLERLLANPELLKEQLGDPPRFAERAIAVSPRWP
Ga0137390_113302442	3300012363	Vadose Zone Soil	METTYSLDQFLADTRATIKTKGIPAGLAEIHDHLEKLLHNPELLKKHLGDPVPHVERT
Ga0157355_10240642	3300012493	Unplanted Soil	MGTDTGYTLDQFLADTRTTIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERTTIGHDPET
Ga0137395_101441541	3300012917	Vadose Zone Soil	METTYSLDQFLADTRATIKTKGIPAGLAEIHDHLEKLLHNPELLKKHLGDPVPHVERTTIGHDPETDVHV
Ga0137396_109185251	3300012918	Vadose Zone Soil	METTYSLDQFLADTRATIKTKGIPAGLAEVRDHLEKLLHNPELLKKHLGDPVPHVERISIGHDPETDVHV
Ga0137394_105645871	3300012922	Vadose Zone Soil	MATDTGYTLDQFLADTRATIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERTTIGHD
Ga0137359_117960122	3300012923	Vadose Zone Soil	MDTTYSLDQFLADTRSTIQIKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPYVER
Ga0137404_109063192	3300012929	Vadose Zone Soil	MATATAYTLDRFLADTRTTIKTKGIPAGLAEIRDHLEKLLHNPELLNKHLGDPTPYIERATIGHDP
Ga0126375_109885702	3300012948	Tropical Forest Soil	MATDAGYTLDQFLADTRATIKAKGVPSGLAEIRDHLEKLLRNPELLKKHLGDP
Ga0126369_101927753	3300012971	Tropical Forest Soil	MATDTAYTLDQFLADTRATIKSKGVPSGLAEIRDHLEKLLRNPDLLKKHLGDPVPYTERTTIG
Ga0126369_133355092	3300012971	Tropical Forest Soil	MATDTAYTLDQFLADTRATIKTKGIPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERTTIGHDPETDVH
Ga0134081_102854531	3300014150	Grasslands Soil	MAADTAYTLDQFLSDTRATIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERTTIGHDPET
Ga0134075_102260921	3300014154	Grasslands Soil	MDTGYTLDQFLADTRATIKTKGVPSGLAEIRDHLERLLRNPDLLEKHLGDPVPYTERTTIGRDPETDVHVLVHGREKAGK
Ga0157377_116876472	3300014745	Miscanthus Rhizosphere	MATVTTYSLDQFLADTRATIKSKGISAGLALIRDHLEKLLHNPELLKKHLGDPVPHVE
Ga0132255_1036566781	3300015374	Arabidopsis Rhizosphere	METTYSLDQFLADTRATIKTKGIPAGLAEIRDHLEKLLHNPELLKKPRGDPVPHVERAPIGHDPETDVHV
Ga0182036_117633292	3300016270	Soil	MATDTAYTLDQFLADTRATSKTKGIPSGLAEIRDHLEKLLRNPELLTKHLGDPVPYRERTTI
Ga0182035_108054601	3300016341	Soil	MATDTAYTLDQFLADTRATIKTKGIPSGLAEIRDHLEKLLRNPELLTKHLGDPVPYRE
Ga0187778_101968332	3300017961	Tropical Peatland	MDTHYSLDQFLADTRATIKTKGVPAGLAEIRDHLEKLLHNPELLTKHLGDPVPQVERTTIGHDPET
Ga0184610_10358922	3300017997	Groundwater Sediment	MDTATTYALDQFLADTRATIKTKGIPAGLAEIRDHVEKLLHNPELLKKHLGDPPPYTERTTIG
Ga0184610_12777421	3300017997	Groundwater Sediment	MAIDTTYTLDQFLADTRAPIKTKGILAGLAEIRDHLEKLLHNPELLKKHLGDPPPYTERTTIGHDPETD
Ga0184623_101920231	3300018056	Groundwater Sediment	MDTATTYALDQFLADTRATIKTKGIPAGLAEIRDHVEKLLHNPELLTKHLGDPPPYTERTTIGHDLETDVHVLV
Ga0184615_105827192	3300018059	Groundwater Sediment	MATDTTYTLDQFLADTRATIKAKGIPSGLAEIREHLEKLLHNPELLRKHLGDPPP
Ga0184640_101263742	3300018074	Groundwater Sediment	MSSNVYSVAQFLADTRATIRSKGIPKGLAEIRSHLERLLQDPKLLEKLLGDPPAHAERTAIAHD
Ga0184640_104082591	3300018074	Groundwater Sediment	MATDTTYTLDQFLADTRHTIKTKGIPAGLAEIRGLLVYLFHNLELLKNLLFDAPPYTELTTSLHALSLHDDFPTRG
Ga0190265_119385801	3300018422	Soil	MAVTALYTLDQFLADTRATIKAKGVPSGLAEIRDHLEKLLANPELLTRHLGDPVPYAERTTIGHDPETDVH
Ga0184642_16935831	3300019279	Groundwater Sediment	SVTMEPTTYTLDQFFSDTRTTIRNKGVPSGLAEIREHLEKLLHNPELLKKHLGIRCPTSSAPP
Ga0187893_108279701	3300019487	Microbial Mat On Rocks	MDTTYSLDQFLADTRTTIRTKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPYVERATIGHDPETDV
Ga0193727_10631421	3300019886	Soil	MDTTYSLDQFLADTRATIQTKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPYVERTTIGHDPE
Ga0210382_100273173	3300021080	Groundwater Sediment	MDTTYSLDQFLADTRATIQTKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPYVERTTIGHDP
Ga0212128_104813111	3300022563	Thermal Springs	MATDTTYTLDQFLADTRATIKSKGIPSGLAEIRDHLEKLLHNPELLTKHLGDPTPYTRLTTIAHDPE
Ga0209640_102461561	3300025324	Soil	MDTTYSLDQFLADTRATIQTKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPYVERATIGHDPETDV
Ga0207646_112958112	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTTIIEIYTVQRFLADTRATIKSKGVPHGLAEVRGHLERLLANPELLKEQLGDPPRFAERTTIGYDPETD
Ga0207681_111606041	3300025923	Switchgrass Rhizosphere	MASETTYSLDQFLADTRATIKSKGIPAGLAEIRDHLEKLLHNPELLTKHLGDPVPYTERTTI
Ga0207689_102195694	3300025942	Miscanthus Rhizosphere	MAVTTHYSLDQFLADTRATIKTKGVPSGLAEIRDHLEKLLANPELLTKHLGDPVPYAERTTIGHDPETD
Ga0207712_109013271	3300025961	Switchgrass Rhizosphere	MTTDTHYTLDQFLADTRETIKKKGIPSGLAEIRDHLEKLLQNPELLTKHLGDPPPY
Ga0207712_120054621	3300025961	Switchgrass Rhizosphere	MGTDTGYTLDQFLADTRTTIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERTTIGHDP
Ga0208286_10005211	3300026015	Rice Paddy Soil	MGAETTYSLDQFLADTRATIKTKGVPAGLAEIRDHLEKLLHNPELLKKHLGDPVPHVERATIG
Ga0207675_1012322962	3300026118	Switchgrass Rhizosphere	MATETTTYTLDQFFADTRATIKAKGVPSGLAEVRDHLEKLLRNPELLKKHLGDPVPYKERTTIGH
Ga0209802_10088027	3300026328	Soil	METVTTYTLDQFLADTRATIETKGIPAGLAEIRDHLERLLRNPDLLRKHLGDSVPYTERTTIGRDPETDVH
Ga0257172_10304481	3300026482	Soil	METTYSLDQFLADTRATIKTRGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPHVERTTIGHDPET
Ga0257164_10948511	3300026497	Soil	MATDTGYTLDQFLADTRTTIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERTTIGHD
Ga0209376_10938333	3300026540	Soil	MAADTAYTLDQFLADTRATIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERTTIGHDPET
Ga0209819_100139511	3300027722	Freshwater Sediment	MTTDTKYTLDQFLADTRATIKTKGIPSGLAEIRDHLEKLLHNPELLKKHLGDPPPYTQ
Ga0209488_106006912	3300027903	Vadose Zone Soil	MGTDTGYTLDQFLADTRSTIKTKGVPSGLAEIRDHLEKLLHNPELLKKHLGDPVPYR
Ga0209853_10897451	3300027961	Groundwater Sand	MATDTAYTLDQFLADTRATIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVP
Ga0256864_11968381	3300027964	Soil	MDTTYSLDQFLADTRATIQTKGIPAGLAEIRDHLEKLLHNPELLEKHLGDPVPYVE
Ga0209705_101496272	3300027979	Freshwater Sediment	MHTTYSLDQFLADTRATIQTKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPYVER
Ga0268264_102320141	3300028381	Switchgrass Rhizosphere	MGTDTGYTLDQFLADTRTTIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERTTIGH
Ga0247822_109294531	3300028592	Soil	MGTDTTYTLDQFLADTRAIIKTKGIPSGLAEIRDHLEKLLHNPELLKKHLGDPVPHVERATIGHDPETD
Ga0247822_111764971	3300028592	Soil	MSPYTLEQFFADTRATIKTKGVPSGLAEIRDHLEKLLHNPELLKKHLGDPVPYTARTTIG
Ga0307305_100532661	3300028807	Soil	MAAIASYSLDQFLADTRATIRAKGIPSGLAEIRDHLERLLANPELLTKHLGDPVPHAERTTIGHD
Ga0299907_109686102	3300030006	Soil	MTTDTKYTLDQFLADTRATIESKGIPSGLAEIRDHLEKLLHNPELLKKHLGDPPPYTQLTTIG
(restricted) Ga0255311_10574432	3300031150	Sandy Soil	MHTTYSLDQFLADTRATIQTKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPYVERATIGHDPETDV
Ga0310888_103571931	3300031538	Soil	MATETTTYTLDQFLADTRATIKAKGVPSGLAEVRDHLEKLLRNPELLKKHLGDPVPYKERTTIGHDPETDVH
Ga0307468_1004357731	3300031740	Hardwood Forest Soil	VTMEPTTYSLDQFFSDTRTTIRNKGVPSGLAEIREHLEKLLRNPELLKKHLGDPVPYAERTTIG
Ga0307468_1011130651	3300031740	Hardwood Forest Soil	MDTTYSLDQFLADTRSTIQNKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPYVERATIGHDP
Ga0307468_1011916781	3300031740	Hardwood Forest Soil	MTTITETYTVQQFLADTRATLKTRGVPHGLAEVRGHLERLLANPDLLKEQLGDPPRFSERATIGYDPETDVHVLVHGR
Ga0307468_1016270872	3300031740	Hardwood Forest Soil	MAVTTTYSLDDFLADTRATIRAKGVPSGLAEIRGHLEKLLHNPELLTTHLGDPVPYTERATLAHDPETDIHVL
Ga0307468_1025583611	3300031740	Hardwood Forest Soil	MDTTYSLDQFLSDTRTTIRTKGIPAGLAEIRDHLEKLLHNPELLKKHLGDPVPYVERATIGHDPETDV
Ga0307473_101967063	3300031820	Hardwood Forest Soil	MSVPTAYSLEQFLADTRTTIKSKGMPAGLAEIRDHLEKLLANPELLKKHLGDPVPYTER
Ga0307473_107536971	3300031820	Hardwood Forest Soil	MAADTAYTLDQFLADTRATIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERTTIGHDPE
Ga0318564_104033861	3300031831	Soil	MATGSGYTLDQFLADTRATIKTKGVPAGLAEIRDHLEKLLRNPELLTKHLGDPVP
Ga0214473_102034741	3300031949	Soil	MATETLYTLDQFLADTRATIKAKGIPAGLAEVRDHLEKLLHNPELLRKHLGDLVPHTERTTIGR
Ga0214473_110799291	3300031949	Soil	MADTTYTLDRFLADTRATITTRGVPAGLAEIRDHLEKLLGNPELLTKHLGDPPPYTALTTIGHDP
Ga0214473_111029622	3300031949	Soil	MATDATYTLDQFLADTRATIRAKGVPAGLAEIRDHLEKLLHNPDLLTTHLGDPVPHTERTTIG
Ga0310895_101001693	3300032122	Soil	MATETTTYTLDQFFADTRATIKAKGVPSGLAEVRDHLEKLLRNPELLKKHLGDPVPYKERTTI
Ga0307470_103404052	3300032174	Hardwood Forest Soil	MATETTQYTLDQFFSDTRTTIRNKGIPSGLAEIREHLEKLLHNPELLKKHLGDPVPYAERTTI
Ga0310889_104280181	3300032179	Soil	MTSDTAYTLDQFLADTRATIKTKGVPSGLAEIREHLEKLLRNPELLKKHLGDPVPYRERTTIG
Ga0307471_1004826881	3300032180	Hardwood Forest Soil	MATDTGYTLDQFLADTRATIKTKGVPSGLAEIRDHLEKLLRNPELLKKHLGDPVPYRERTTI
Ga0307471_1017479742	3300032180	Hardwood Forest Soil	MATETTQYTLDQFLSDTRTTIRHKGIPSGLAEIREHLEKLLHNPELLKKHLGDPVPYAERTTI
Ga0307471_1037927321	3300032180	Hardwood Forest Soil	METNYSLDQFLADTRATIKTRGIPAGLAEIRDHLEKLLHNPALLKKHLGDPVPHVERTTIGH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters