Metagenome / Metatranscriptome Family F055548

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F055548
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	46 residues
Representative Sequence	FAKRVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV
Number of Associated Samples	100
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.55 %
% of genes from short scaffolds (< 2000 bps)	88.41 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (36.232 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (22.464 % of family members)
Environment Ontology (ENVO)	Unclassified (55.797 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (61.594 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.66% β-sheet: 0.00% Coil/Unstructured: 75.34%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF07659	DUF1599	47.83
PF04545	Sigma70_r4	7.97
PF05869	Dam	3.62
PF00145	DNA_methylase	2.90
PF01844	HNH	2.90
PF11397	GlcNAc	2.90
PF02767	DNA_pol3_beta_2	1.45
PF02945	Endonuclease_7	1.45
PF01555	N6_N4_Mtase	0.72
PF13578	Methyltransf_24	0.72
PF09723	Zn-ribbon_8	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	2.90
COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	Replication, recombination and repair [L]	1.45
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.72
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.72
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.09 %
Unclassified	root	N/A	23.91 %

Name	Rank	Taxonomy	Distribution
Viruses	superkingdom	All Organisms → Viruses	39.86 %
cellular organisms	root	All Organisms → cellular organisms	36.23 %
Unclassified	root	N/A	23.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.88 %
Unclassified	root	N/A	23.91 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	7.97 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	29.71 %
Unclassified	root	N/A	23.91 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	7.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.62 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	29.71 %
Unclassified	root	N/A	23.91 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	7.97 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.62 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	29.71 %
Unclassified	root	N/A	23.91 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7.97 %
Moraxellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales	3.62 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.88 %
Unclassified	root	N/A	23.91 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	7.97 %
Jiangellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales	3.62 %
Moraxellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae	3.62 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.88 %
Unclassified	root	N/A	23.91 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7.97 %
Jiangellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae	3.62 %
Acinetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	3.62 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.88 %
Unclassified	root	N/A	23.91 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7.97 %
Jiangella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella	3.62 %
Acinetobacter baylyi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	3.62 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.88 %
Unclassified	root	N/A	23.91 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7.97 %
Jiangella anatolica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella anatolica	3.62 %
Acinetobacter baylyi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	3.62 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002161\|JGI24766J26685_10125105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	542	Open in IMG/M
3300003393\|JGI25909J50240_1026568	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300003986\|Ga0063233_10269304	Not Available	528	Open in IMG/M
3300004096\|Ga0066177_10045791	All Organisms → Viruses → Predicted Viral	1531	Open in IMG/M
3300004124\|Ga0066178_10245723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	520	Open in IMG/M
3300004461\|Ga0066223_1022149	All Organisms → Viruses → Predicted Viral	3240	Open in IMG/M
3300004481\|Ga0069718_10014634	Not Available	606	Open in IMG/M
3300005527\|Ga0068876_10508857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	660	Open in IMG/M
3300005662\|Ga0078894_11411481	Not Available	581	Open in IMG/M
3300006802\|Ga0070749_10593834	Not Available	597	Open in IMG/M
3300006805\|Ga0075464_10897377	Not Available	553	Open in IMG/M
3300006920\|Ga0070748_1291438	Not Available	581	Open in IMG/M
3300007992\|Ga0105748_10093258	All Organisms → Viruses → Predicted Viral	1199	Open in IMG/M
3300008107\|Ga0114340_1005825	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6517	Open in IMG/M
3300008107\|Ga0114340_1068477	All Organisms → Viruses → Predicted Viral	1501	Open in IMG/M
3300008108\|Ga0114341_10398052	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	668	Open in IMG/M
3300008108\|Ga0114341_10414237	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	646	Open in IMG/M
3300008108\|Ga0114341_10428568	Not Available	628	Open in IMG/M
3300008110\|Ga0114343_1048539	All Organisms → Viruses → Predicted Viral	1654	Open in IMG/M
3300008110\|Ga0114343_1175739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	651	Open in IMG/M
3300008110\|Ga0114343_1181627	Not Available	632	Open in IMG/M
3300008113\|Ga0114346_1079120	All Organisms → Viruses → Predicted Viral	1555	Open in IMG/M
3300008113\|Ga0114346_1197914	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	805	Open in IMG/M
3300008116\|Ga0114350_1008523	All Organisms → Viruses → Predicted Viral	4754	Open in IMG/M
3300008116\|Ga0114350_1033912	All Organisms → Viruses → Predicted Viral	1994	Open in IMG/M
3300008120\|Ga0114355_1097500	All Organisms → Viruses → Predicted Viral	1164	Open in IMG/M
3300008261\|Ga0114336_1075069	All Organisms → Viruses → Predicted Viral	2460	Open in IMG/M
3300008261\|Ga0114336_1161868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	980	Open in IMG/M
3300008262\|Ga0114337_1127584	All Organisms → Viruses → Predicted Viral	1139	Open in IMG/M
3300008450\|Ga0114880_1054002	All Organisms → Viruses → Predicted Viral	1685	Open in IMG/M
3300008450\|Ga0114880_1067249	All Organisms → Viruses → Predicted Viral	1465	Open in IMG/M
3300008450\|Ga0114880_1071294	All Organisms → Viruses → Predicted Viral	1411	Open in IMG/M
3300009009\|Ga0105105_10443837	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	732	Open in IMG/M
3300009081\|Ga0105098_10084986	All Organisms → Viruses → Predicted Viral	1346	Open in IMG/M
3300009085\|Ga0105103_10926172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella anatolica	512	Open in IMG/M
3300009158\|Ga0114977_10200843	All Organisms → Viruses → Predicted Viral	1169	Open in IMG/M
3300009160\|Ga0114981_10074767	All Organisms → Viruses → Predicted Viral	1883	Open in IMG/M
3300009164\|Ga0114975_10175175	Not Available	1219	Open in IMG/M
3300009164\|Ga0114975_10540325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	625	Open in IMG/M
3300009168\|Ga0105104_10336609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella anatolica	833	Open in IMG/M
3300009169\|Ga0105097_10628391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605	Open in IMG/M
3300009170\|Ga0105096_10319331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	794	Open in IMG/M
3300009170\|Ga0105096_10558096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	599	Open in IMG/M
3300009180\|Ga0114979_10588542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	637	Open in IMG/M
3300009184\|Ga0114976_10028088	All Organisms → Viruses → Predicted Viral	3396	Open in IMG/M
3300009184\|Ga0114976_10194976	All Organisms → Viruses → Predicted Viral	1118	Open in IMG/M
3300010157\|Ga0114964_10027831	All Organisms → Viruses → Predicted Viral	3143	Open in IMG/M
3300010157\|Ga0114964_10089110	All Organisms → Viruses → Predicted Viral	1543	Open in IMG/M
3300010160\|Ga0114967_10565230	Not Available	549	Open in IMG/M
3300010334\|Ga0136644_10329637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	879	Open in IMG/M
3300012013\|Ga0153805_1066660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	610	Open in IMG/M
3300012723\|Ga0157604_1253125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	789	Open in IMG/M
3300013005\|Ga0164292_10072996	All Organisms → Viruses → Predicted Viral	2639	Open in IMG/M
3300013014\|Ga0164295_11137994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	606	Open in IMG/M
3300017723\|Ga0181362_1044563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	930	Open in IMG/M
3300017723\|Ga0181362_1104484	Not Available	561	Open in IMG/M
3300017736\|Ga0181365_1135164	Not Available	588	Open in IMG/M
3300017761\|Ga0181356_1018736	All Organisms → Viruses → Predicted Viral	2556	Open in IMG/M
3300017761\|Ga0181356_1087346	Not Available	1028	Open in IMG/M
3300017761\|Ga0181356_1112705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	875	Open in IMG/M
3300017766\|Ga0181343_1154707	Not Available	638	Open in IMG/M
3300017766\|Ga0181343_1163776	Not Available	617	Open in IMG/M
3300017774\|Ga0181358_1107263	Not Available	994	Open in IMG/M
3300017777\|Ga0181357_1060481	All Organisms → Viruses → Predicted Viral	1467	Open in IMG/M
3300017780\|Ga0181346_1241886	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	634	Open in IMG/M
3300017780\|Ga0181346_1279358	Not Available	573	Open in IMG/M
3300017784\|Ga0181348_1086016	All Organisms → Viruses → Predicted Viral	1242	Open in IMG/M
3300017784\|Ga0181348_1320327	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	513	Open in IMG/M
3300017785\|Ga0181355_1007427	All Organisms → Viruses → Predicted Viral	4844	Open in IMG/M
3300017785\|Ga0181355_1088968	All Organisms → Viruses → Predicted Viral	1285	Open in IMG/M
3300017785\|Ga0181355_1106424	All Organisms → Viruses → Predicted Viral	1156	Open in IMG/M
3300017785\|Ga0181355_1143686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	966	Open in IMG/M
3300021952\|Ga0213921_1049174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	624	Open in IMG/M
3300021956\|Ga0213922_1029686	All Organisms → Viruses → Predicted Viral	1320	Open in IMG/M
3300021963\|Ga0222712_10347081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	916	Open in IMG/M
3300022190\|Ga0181354_1021280	All Organisms → Viruses → Predicted Viral	2059	Open in IMG/M
3300022407\|Ga0181351_1155486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	817	Open in IMG/M
3300022407\|Ga0181351_1188485	Not Available	702	Open in IMG/M
3300022747\|Ga0228703_1108830	Not Available	638	Open in IMG/M
3300023174\|Ga0214921_10372390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	746	Open in IMG/M
3300024358\|Ga0255173_1062833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	623	Open in IMG/M
3300024513\|Ga0255144_1020479	All Organisms → Viruses → Predicted Viral	1144	Open in IMG/M
3300025075\|Ga0209615_102583	All Organisms → Viruses → Predicted Viral	1133	Open in IMG/M
3300027142\|Ga0255065_1092223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	503	Open in IMG/M
3300027146\|Ga0255104_1042045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	785	Open in IMG/M
3300027156\|Ga0255078_1107562	Not Available	520	Open in IMG/M
3300027365\|Ga0209300_1043614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	799	Open in IMG/M
3300027608\|Ga0208974_1147024	Not Available	600	Open in IMG/M
3300027644\|Ga0209356_1213987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	516	Open in IMG/M
3300027659\|Ga0208975_1107607	Not Available	805	Open in IMG/M
3300027659\|Ga0208975_1186037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	562	Open in IMG/M
3300027707\|Ga0209443_1158696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	818	Open in IMG/M
3300027710\|Ga0209599_10070622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella anatolica	917	Open in IMG/M
3300027710\|Ga0209599_10099958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	764	Open in IMG/M
(restricted) 3300027730\|Ga0247833_1330872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	503	Open in IMG/M
3300027736\|Ga0209190_1183892	Not Available	875	Open in IMG/M
3300027741\|Ga0209085_1279468	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	643	Open in IMG/M
3300027754\|Ga0209596_1348053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	572	Open in IMG/M
3300027764\|Ga0209134_10249243	Not Available	608	Open in IMG/M
3300027792\|Ga0209287_10214803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	734	Open in IMG/M
3300027808\|Ga0209354_10001745	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9468	Open in IMG/M
3300027900\|Ga0209253_11103235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	540	Open in IMG/M
3300028025\|Ga0247723_1032189	All Organisms → cellular organisms → Bacteria	1639	Open in IMG/M
3300028025\|Ga0247723_1073956	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300028027\|Ga0247722_10127973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	925	Open in IMG/M
3300031857\|Ga0315909_10023561	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6124	Open in IMG/M
3300031857\|Ga0315909_10125825	All Organisms → Viruses → Predicted Viral	2156	Open in IMG/M
3300031951\|Ga0315904_10456377	All Organisms → Viruses → Predicted Viral	1140	Open in IMG/M
3300031963\|Ga0315901_10228544	All Organisms → Viruses → Predicted Viral	1589	Open in IMG/M
3300031963\|Ga0315901_10487308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	964	Open in IMG/M
3300031963\|Ga0315901_10595666	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300031963\|Ga0315901_11146795	Not Available	531	Open in IMG/M
3300031999\|Ga0315274_12040082	Not Available	513	Open in IMG/M
3300032046\|Ga0315289_11386867	Not Available	547	Open in IMG/M
3300032050\|Ga0315906_10252060	All Organisms → Viruses → Predicted Viral	1621	Open in IMG/M
3300032050\|Ga0315906_10563821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	947	Open in IMG/M
3300032093\|Ga0315902_10515057	All Organisms → Viruses → Predicted Viral	1035	Open in IMG/M
3300032116\|Ga0315903_10274203	All Organisms → Viruses → Predicted Viral	1442	Open in IMG/M
3300032116\|Ga0315903_10786111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	697	Open in IMG/M
3300032116\|Ga0315903_10821927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	675	Open in IMG/M
3300032462\|Ga0335396_10560918	Not Available	716	Open in IMG/M
3300033994\|Ga0334996_0053056	All Organisms → Viruses → Predicted Viral	2504	Open in IMG/M
3300033995\|Ga0335003_0274056	Not Available	769	Open in IMG/M
3300033996\|Ga0334979_0552864	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	617	Open in IMG/M
3300034012\|Ga0334986_0091423	All Organisms → Viruses → Predicted Viral	1839	Open in IMG/M
3300034012\|Ga0334986_0101366	All Organisms → Viruses → Predicted Viral	1725	Open in IMG/M
3300034022\|Ga0335005_0763417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	504	Open in IMG/M
3300034066\|Ga0335019_0269107	All Organisms → Viruses → Predicted Viral	1079	Open in IMG/M
3300034093\|Ga0335012_0406047	Not Available	665	Open in IMG/M
3300034103\|Ga0335030_0433464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella anatolica	845	Open in IMG/M
3300034104\|Ga0335031_0355355	Not Available	935	Open in IMG/M
3300034104\|Ga0335031_0745133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	556	Open in IMG/M
3300034106\|Ga0335036_0778543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella anatolica	556	Open in IMG/M
3300034122\|Ga0335060_0342985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	805	Open in IMG/M
3300034283\|Ga0335007_0240394	All Organisms → Viruses → Predicted Viral	1227	Open in IMG/M
3300034283\|Ga0335007_0264971	All Organisms → Viruses → Predicted Viral	1148	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	95.65%
Terrestrial	Environmental → Terrestrial	4.35%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	91.30%
Marine	Environmental → Aquatic → Marine	4.35%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	4.35%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	39.86%
Lentic	Environmental → Aquatic → Freshwater → Lentic	26.09%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	10.87%
Sediment	Environmental → Aquatic → Freshwater → Sediment	6.52%
River	Environmental → Aquatic → Freshwater → River	4.35%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	4.35%
Coastal	Environmental → Aquatic → Marine → Coastal	3.62%
Creek	Environmental → Aquatic → Freshwater → Creek	2.17%
Ice	Environmental → Aquatic → Freshwater → Ice	1.45%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	38.41%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	25.36%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	10.87%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	6.52%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	4.35%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	4.35%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.62%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	2.17%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.45%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.72%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.72%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	0.72%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	22.46%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	14.49%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	11.59%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	10.14%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	10.14%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	5.80%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	4.35%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.17%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.17%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	2.17%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.17%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	2.17%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	2.17%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.45%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.72%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.72%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.72%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.72%
Surface Ice	Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice	0.72%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	0.72%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.72%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.72%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.72%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002161	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M
3300003986	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN (v2)	Environmental	Open in IMG/M
3300004096	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 2)	Environmental	Open in IMG/M
3300004124	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (version 2)	Environmental	Open in IMG/M
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300007992	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um	Environmental	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008108	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA	Environmental	Open in IMG/M
3300008110	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA	Environmental	Open in IMG/M
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental	Open in IMG/M
3300008116	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA	Environmental	Open in IMG/M
3300008120	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA	Environmental	Open in IMG/M
3300008261	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA	Environmental	Open in IMG/M
3300008262	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009158	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG	Environmental	Open in IMG/M
3300009160	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG	Environmental	Open in IMG/M
3300009164	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009180	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG	Environmental	Open in IMG/M
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental	Open in IMG/M
3300010157	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG	Environmental	Open in IMG/M
3300010160	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG	Environmental	Open in IMG/M
3300010334	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)	Environmental	Open in IMG/M
3300012013	Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface Ice	Environmental	Open in IMG/M
3300012723	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES129 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental	Open in IMG/M
3300013014	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG	Environmental	Open in IMG/M
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental	Open in IMG/M
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017766	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D	Environmental	Open in IMG/M
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017780	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N	Environmental	Open in IMG/M
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300021952	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG	Environmental	Open in IMG/M
3300021956	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG	Environmental	Open in IMG/M
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental	Open in IMG/M
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental	Open in IMG/M
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental	Open in IMG/M
3300022747	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MG	Environmental	Open in IMG/M
3300023174	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505	Environmental	Open in IMG/M
3300024358	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepA_8d	Environmental	Open in IMG/M
3300024496	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8h	Environmental	Open in IMG/M
3300024513	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_8h	Environmental	Open in IMG/M
3300025075	Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 4B3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027142	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_0h	Environmental	Open in IMG/M
3300027146	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_0h	Environmental	Open in IMG/M
3300027156	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepA_8h	Environmental	Open in IMG/M
3300027365	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)	Environmental	Open in IMG/M
3300027608	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)	Environmental	Open in IMG/M
3300027644	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027659	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)	Environmental	Open in IMG/M
3300027707	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)	Environmental	Open in IMG/M
3300027710	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)	Environmental	Open in IMG/M
3300027730 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m	Environmental	Open in IMG/M
3300027736	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027741	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027764	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)	Environmental	Open in IMG/M
3300027792	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental	Open in IMG/M
3300028027	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental	Open in IMG/M
3300032050	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122	Environmental	Open in IMG/M
3300032093	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117	Environmental	Open in IMG/M
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental	Open in IMG/M
3300032462	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly)	Environmental	Open in IMG/M
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental	Open in IMG/M
3300033995	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056	Environmental	Open in IMG/M
3300033996	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004	Environmental	Open in IMG/M
3300034012	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027	Environmental	Open in IMG/M
3300034022	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058	Environmental	Open in IMG/M
3300034066	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087	Environmental	Open in IMG/M
3300034093	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072	Environmental	Open in IMG/M
3300034103	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119	Environmental	Open in IMG/M
3300034104	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M
3300034122	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181	Environmental	Open in IMG/M
3300034283	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24766J26685_101251052	3300002161	Freshwater And Sediment	VLNAVIVTLPPGMDINDYYLAHGADATRALLVGEQIG*
JGI25909J50240_10265681	3300003393	Freshwater Lake	VKEDGSNPGAEFSKRVANEVMNSTIVTLPPNMDINDYYLAHGASATRKLLIGESSE*
Ga0063233_102693042	3300003986	Freshwater Lake	NEVMNSQIVTLPPGMDINDYYLVNGIDDTRKLLIGESNV*
Ga0066177_100457911	3300004096	Freshwater Lake	GAEFSKRVAQEITNSTIVTLPPSMDINDFYLANGADATKALLLGEKDE*
Ga0066178_102457232	3300004124	Freshwater Lake	ADFAKRVANEIINSTIVTLPAGMDINDYYLAYGADATRALLVGELKG*
Ga0066223_10221498	3300004461	Marine	ADFAKRVANEILNSQIVTLPPGMDINDYYLAHGADATRALLVGEKGE*
Ga0069718_100146342	3300004481	Sediment	FSKRVASEVLNSTIVTLPPNMDINDYYLAHGAEATSTLLVGEGNG*
Ga0068876_105088571	3300005527	Freshwater Lake	PGAEFAKRVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV*
Ga0078894_114114812	3300005662	Freshwater Lake	VAGEVINGTIVQLPPNMDITDYYLANGADATKQLLGVPNV*
Ga0070749_105938341	3300006802	Aqueous	NEILNSQIVTLPPGMDINDYYLAHGADATRALLVGEKGE*
Ga0075464_108973772	3300006805	Aqueous	AEFAKRVAQEVSNSTIVTLPPSMDINDFYLARGLDATKALLLGEKDE*
Ga0070748_12914381	3300006920	Aqueous	NGTIVQLPPNMDITDYYLANGADATKHLLGVPNV*
Ga0105748_100932583	3300007992	Estuary Water	ANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV*
Ga0114340_100582523	3300008107	Freshwater, Plankton	VMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV*
Ga0114340_10684774	3300008107	Freshwater, Plankton	AKRVANEVMNSTIVTLPPSMDINDYYLANGAEATRNLLIGESNG*
Ga0114341_103980521	3300008108	Freshwater, Plankton	GAEFAKRVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV*
Ga0114341_104142372	3300008108	Freshwater, Plankton	IKEDGTNPGAEFAKRVANDVMNSQIVTLPPGMDINDYYLANGIDATKELLTGNASNR*
Ga0114341_104285682	3300008108	Freshwater, Plankton	EVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV*
Ga0114343_10485394	3300008110	Freshwater, Plankton	KEDGTNPGAEFAKRVANDVMNSTIVTLPPGMDINDYYLANGEVATRALLTGEKGE*
Ga0114343_11757391	3300008110	Freshwater, Plankton	EFAKRVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV*
Ga0114343_11816272	3300008110	Freshwater, Plankton	LNGTIVTLPPNMDINDYYLAHGAEATTALLVGEGNG*
Ga0114346_10791204	3300008113	Freshwater, Plankton	KEDGSNPGAEFAKRVANEVMNSTIVTLPPSMDINDYYLANGVEATRNLLIGESNE*
Ga0114346_11979143	3300008113	Freshwater, Plankton	EFAKRVANDVMNSQIVTLPPGMDINDYYLANGIDATKELLTGNASNR*
Ga0114350_100852314	3300008116	Freshwater, Plankton	KEDGSNPGAEFAKRVANEVMNSTIVTLPPSMDINDYYLANGAEATRNLLIGESNG*
Ga0114350_10339125	3300008116	Freshwater, Plankton	MNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV*
Ga0114355_10975003	3300008120	Freshwater, Plankton	GTNPGADFAKRVANEILNSTIVTLPPGMDINDYYLAYGADATRTLLVGEPKG*
Ga0114336_10750697	3300008261	Freshwater, Plankton	IKEDGTNPGAEFAKRVANDVMNSTIVTLPPGMDINDYYLANGEVATRALLTGEKGE*
Ga0114336_11618683	3300008261	Freshwater, Plankton	EDGSNPGAEFSKRVANEIINSQIVTLPPGLDINDYYLAYGADATKALLVGETKGE*
Ga0114337_11275841	3300008262	Freshwater, Plankton	NSTIVTLPPGMDINDYYLAHGADATRALLVGEPKGE*
Ga0114880_10540021	3300008450	Freshwater Lake	NDVKEDGSNPGADFSKRVSQEVLNGTIVHLPPNMDINDYYLAYGAQATKTLLVGEGNG*
Ga0114880_10672494	3300008450	Freshwater Lake	EILNSTIVTLPPGMDINDYYLAYGADATRALLVGEPKGE*
Ga0114880_10712944	3300008450	Freshwater Lake	NEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV*
Ga0105105_104438373	3300009009	Freshwater Sediment	ANEVMNSVIVTLPPGMDINDYYLAHGADATRALLVGEQIG*
Ga0105098_100849864	3300009081	Freshwater Sediment	NEVMNSSIVTLPPGMDINDYYLAHGADATRALLVGEQIG*
Ga0105103_109261722	3300009085	Freshwater Sediment	GSNPGQEFAKRVANEVMNSTIFTLPPGMDINDYYLTHGVEATRTLLIGESNV*
Ga0114977_102008431	3300009158	Freshwater Lake	NSTIVTLPPGMDINDHYLAYGADATRTLLVGEPKG*
Ga0114981_100747671	3300009160	Freshwater Lake	RVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV*
Ga0114975_101751753	3300009164	Freshwater Lake	VANEILNSVIVTLPPGMDINDYYLANGADATRALLVGEKGE*
Ga0114975_105403252	3300009164	Freshwater Lake	GAEFSKRVASEVLNSTIVTLPPNMDINDYYLAYGADATKTLLVGEENG*
Ga0105104_103366093	3300009168	Freshwater Sediment	AKRVANDVMNSIIVTLPPGMDINDYYLANGEVATRALLTGEKGE*
Ga0105097_106283911	3300009169	Freshwater Sediment	DGTNPGAEFAKRVAQEVSNSTIVTLPPSMDINDFYLTKGLDATKALLLGQKDE*
Ga0105096_103193313	3300009170	Freshwater Sediment	SVIVTLPPGMDINDYYLAHGADATRALLVGEQIG*
Ga0105096_105580961	3300009170	Freshwater Sediment	VANEVMNSTIVTLPPGMDINDYYLAYGADATRALLVGELKGE*
Ga0114979_105885423	3300009180	Freshwater Lake	ANEVMNSTIVTLPAGMDINDYYLKHGVDDTRKLLIGESNV*
Ga0114976_100280881	3300009184	Freshwater Lake	VLNGVIVTLPPNMDINDYYLAYGADATRALLVGEMNG*
Ga0114976_101949763	3300009184	Freshwater Lake	ANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGVEQ*
Ga0114964_100278318	3300010157	Freshwater Lake	AKRVASEVLNSVIVTLPPNMDINDYYLAYGAEATQTLLVGEQNG*
Ga0114964_100891104	3300010157	Freshwater Lake	AKRVASEVLNSVIVTLPPNMDINDYYLAYGAEATQTLLVGEKNG*
Ga0114967_105652302	3300010160	Freshwater Lake	NPGADFSKRVQQEVLNGVIVTLPPNMDINDYYLAYGADATRALLVGEQNG*
Ga0136644_103296371	3300010334	Freshwater Lake	DGSNPGAEFAKRVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV*
Ga0153805_10666602	3300012013	Surface Ice	SNPGAEFAKRVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV*
Ga0157604_12531253	3300012723	Freshwater	FAKRVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV*
Ga0164292_100729961	3300013005	Freshwater	GTNPGAEFSKRVQQEVLNGTIVTLPPSMDINDYYLAHGTDATKALLIGEPSASY*
Ga0164295_111379941	3300013014	Freshwater	DGSNPGADFAKRVANEILNSTIVTMPPGMDINDHYLAYGADATRTLLVGEMKG*
Ga0181362_10445631	3300017723	Freshwater Lake	PGADFAKRVASEVLNGTIVSLPPSMDINDFYLANGTEGIKKLLGEKSE
Ga0181362_11044841	3300017723	Freshwater Lake	PGAEFAKRVANEVFNSVIVTLPPNMDINDYYLANGASATRKLLIGESDV
Ga0181365_11351641	3300017736	Freshwater Lake	KEDGSNPGADFSKRVQQEVLNGVIVTLPTNMDINDYYLAYGADATRALLVGEQNG
Ga0181356_10187361	3300017761	Freshwater Lake	DFAKRVANEIINSTIVTLPPGMDINDYYLAYGADATRTLLVGELKGE
Ga0181356_10873463	3300017761	Freshwater Lake	ASEVLNGTIVSLPPSMDINDFYLANGTEGIKKLLGEKSE
Ga0181356_11127051	3300017761	Freshwater Lake	AQEISNSTIVTLPPSMDINDFYLANGADATKALLLGEKDE
Ga0181343_11547073	3300017766	Freshwater Lake	GTNPGAEFSKRVQQEVLNGTIVHLPPNMDINDYYLAYGAEATKTLLVGEAIG
Ga0181343_11637763	3300017766	Freshwater Lake	MNSTIVTLPPNMDINDYYLANGIEATRNLLIGESNE
Ga0181358_11072633	3300017774	Freshwater Lake	LNGVIVTLPTNMDINDYYLAYGADATRALLVGEQNG
Ga0181357_10604811	3300017777	Freshwater Lake	RVANEVMNSQIVTLPPGMDINDYYLANGIDATRELLIGRQ
Ga0181346_12418862	3300017780	Freshwater Lake	KEDGSNPGADFSKRVANEVMNSTIVTLPPNMDINDYYLVHGASATRKLLIGEYSE
Ga0181346_12793582	3300017780	Freshwater Lake	VMNSQIVTLPPGLDINDYYLANGIDATRKLLIGESNV
Ga0181348_10860161	3300017784	Freshwater Lake	DGSNPGAEFAKRVANEVMNSQIVTLPPGMDINDYYLVNGIDDTRKLLIGESNV
Ga0181348_13203272	3300017784	Freshwater Lake	VANEVMNSTIVTLPPNMDINDYYLVHGASATRKLLIGEYSE
Ga0181355_10074271	3300017785	Freshwater Lake	ISNSTIVTLPPSMDINDFYLANGADATKALLLGEKDE
Ga0181355_10889684	3300017785	Freshwater Lake	VANEVMNSVIVTLPPGMDINDYYLAHGADATRALLVGEKGE
Ga0181355_11064243	3300017785	Freshwater Lake	VANEVMNSQIVTLPPGMDINDYYLANGIDATRELLIGRQ
Ga0181355_11436861	3300017785	Freshwater Lake	IKEDGTNPGAEFSKRVASEILNSQIVTLPPGMDINDYYLAHGAEATRALLVGEPKGE
Ga0213921_10491743	3300021952	Freshwater	NEVMNSVIVTLPPGMDINDYYLAHGADATRALLVGEKGE
Ga0213922_10296864	3300021956	Freshwater	DGSNPGAEFSKRVASEVLNGTIVHLPPNMDINDYYLVHGADATKTLLVGE
Ga0222712_103470811	3300021963	Estuarine Water	EFAKRVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV
Ga0181354_10212801	3300022190	Freshwater Lake	RAEFAKRVANEVMNSQIVTLPPGMDINDYYLVNGIDDTRKLLIGESNV
Ga0181351_11554863	3300022407	Freshwater Lake	EDGSNPGAEFSKRVANEIINSQIVTLPPGLDINDYYLAYGADATKALLVGETKGE
Ga0181351_11884853	3300022407	Freshwater Lake	NSQIVTLPPGMDINNYYLVNGIDDTRKLLIGESNV
Ga0228703_11088303	3300022747	Freshwater	KEDGSNPGAEFNRRVASEVMNATIVNLPEGLDINDYYLQNGHDKTRRLLGVVDE
Ga0214921_103723903	3300023174	Freshwater	GSNPGADFAKRVANEIVNSQIVTLPAGMDINDYYLAYGAEATRTLLIGELKG
Ga0255173_10628331	3300024358	Freshwater	ADFAKRVHQEVLNGVIISLPPNMDINDYYLAYGADATKTLLVGEAIG
Ga0255151_10784492	3300024496	Freshwater	KEDGTNPGQEFARRVASEVINATIVSLPAGLDITDYYLQNGYDETRRLFGVASDMF
Ga0255144_10204791	3300024513	Freshwater	FAKRVHQEVLNGVIISLPPNMDINDYYLAYGADATKTLLVGETIG
Ga0209615_1025831	3300025075	Freshwater	SKRVAQEVTNSTIVTLPPSMDINDYYLANGVDATRALLLGEKDE
Ga0255065_10922231	3300027142	Freshwater	DGSNPGAEFAKRVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV
Ga0255104_10420453	3300027146	Freshwater	EFSKRVANEIINSQIVTLPPGLDINDYYLAYGADATKALLVGETKGE
Ga0255078_11075622	3300027156	Freshwater	DGSNPGADFSKRVQQEVLNGVIVTLPPNMDINDYYLAYGADATRALLVGEQNG
Ga0209300_10436143	3300027365	Deep Subsurface	INSQIVTLPPGLDINDYYLAYGADATKALLVGETKGE
Ga0208974_11470242	3300027608	Freshwater Lentic	AKRVANEVMNSTIVTLPAGMDINDYYLKHGMEDTRKLLIGESNV
Ga0209356_12139872	3300027644	Freshwater Lake	AEFAKRVANEVMNSQIVTLPPGMDINDYYLANGGPATRKLLIGESNV
Ga0208975_11076071	3300027659	Freshwater Lentic	ANEILNSTIVTLPPGMDINDYYLAHGADATRALLVGEPKGE
Ga0208975_11860371	3300027659	Freshwater Lentic	GSNPGAEFSKRVANEIINSQIVTLPPGLDINDYYLAYGADATKALLVGETKGE
Ga0209443_11586961	3300027707	Freshwater Lake	SKRVAQEITNSTIVTLPPSMDINDFYLANGADATKALLLGEKDE
Ga0209599_100706223	3300027710	Deep Subsurface	NPGAEFAKRVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV
Ga0209599_100999583	3300027710	Deep Subsurface	SNPGADFSKRVANEIVNSQIVTLPAGMDINDYYLAYGADATRTLLIGELKG
(restricted) Ga0247833_13308721	3300027730	Freshwater	GTNPGAEFSKRVASEVLNSQIVTLPPNMDINDYYLAYGEQATKTLLVGEAIG
Ga0209190_11838923	3300027736	Freshwater Lake	GAEFAKRVANEVMNSTIVTLPAGMDINDYYLKHGVEDTRKLLIGESNV
Ga0209085_12794682	3300027741	Freshwater Lake	KRVASEVLNSVIVTLPPGMDVNDYYLAYGADATRTLLVGEPSASH
Ga0209596_13480531	3300027754	Freshwater Lake	FAKRVANEVMNSQIVTLPPGMDINDYYLANGGPATRKLLIGESNV
Ga0209134_102492431	3300027764	Freshwater Lake	NEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV
Ga0209287_102148031	3300027792	Freshwater Sediment	RVANEVMNSVIVTLPPGMDINDYYLAHGADATRALLVGEQIG
Ga0209354_100017451	3300027808	Freshwater Lake	GAEFSKRVANEVMNSTIVTLPPNMDINDYYLAHGASATRKLLIGESSE
Ga0209253_111032352	3300027900	Freshwater Lake Sediment	DNDIKEDGTNPGAEFSKRVASEIINSQIVTLPPGMDINDYYLANGADATRALLVGESKGE
Ga0247723_10321891	3300028025	Deep Subsurface Sediment	EDGSNPGAEFSKRVANEVMNSTIVSLPAGMDITDYYLANGAEATRKILIGGYAGE
Ga0247723_10739561	3300028025	Deep Subsurface Sediment	AKRVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV
Ga0247722_101279733	3300028027	Deep Subsurface Sediment	DFSKRVANEIVNSQIVTLPAGMDINDYYLAYGADATRTLLIGELKG
Ga0315909_100235611	3300031857	Freshwater	AKRVANEVMNSTIVTLPPSMDINDYYLANGVEATRNLLIGESNE
Ga0315909_101258256	3300031857	Freshwater	DNDIKEDGTNPGADFAKRVANEILNSTIVTLPPGMDINDYYLAYGADATRTLLVGEPKG
Ga0315904_104563771	3300031951	Freshwater	NSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV
Ga0315901_102285441	3300031963	Freshwater	KEDGSNPGAEFAKRVANEVMNSTIVTLPPSMDINDYYLANGVEATRNLLIGESNE
Ga0315901_104873083	3300031963	Freshwater	AEFAKRVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV
Ga0315901_105956663	3300031963	Freshwater	GSNPGAEFAKRVANEVMNSQIVTLTPGMDINDYYLANGIDATRKLLIGESNV
Ga0315901_111467951	3300031963	Freshwater	GSNPGADFSKRVQQEVLNGVIVTLPPNMDINDYYLAYGADATRALLVGEMNG
Ga0315274_120400822	3300031999	Sediment	GSNPGADFSKRVQQEVLNGVIVTLPTNMDINDYYLAYGADATRALLVGEQNG
Ga0315289_113868672	3300032046	Sediment	VANDVMNSTIVTLPPGMDINDYYLAHGASATRALLVGVESE
Ga0315906_102520604	3300032050	Freshwater	KRVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV
Ga0315906_105638213	3300032050	Freshwater	AKRVANDVMNSTIVTLPPGMDINDYYLANGEVATRALLTGEKGE
Ga0315902_1004500616	3300032093	Freshwater	TIYVIGDNDIKEDGTNPGAEFAKRVANEVINSVIVTLPPGMDINDYYLAHGDVATRALLTGERNE
Ga0315902_105150571	3300032093	Freshwater	MNSTIVTLPPGMDINDYYLANGEVATRALLTGEKGE
Ga0315903_102742034	3300032116	Freshwater	VANEILNSTIVTMPPGMDINDYYLAFGADATRSLLVGELKG
Ga0315903_107861113	3300032116	Freshwater	TNPGAEFSKRVASEILNSVIVTLPPGMDINDHYLKFGADATRALLVGEKGE
Ga0315903_108219271	3300032116	Freshwater	FAKRVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV
Ga0335396_105609183	3300032462	Freshwater	EDGSNPGQDFAKRVANEVLNSVIVTLPPGQDINDYYLVHGADATRTLLIGARGE
Ga0334996_0053056_2385_2504	3300033994	Freshwater	EILNSTIVTLPPGMDINDYYLAHGADATRALLVGEPKGE
Ga0335003_0274056_657_767	3300033995	Freshwater	MNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV
Ga0334979_0552864_461_616	3300033996	Freshwater	PGAEFSKRVQQEVLNGTIVTLPPSMDINDYYLAHGTDATKALLIGEPSASY
Ga0334986_0091423_1681_1839	3300034012	Freshwater	GSNPGAEFAKRVANEVINSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV
Ga0334986_0101366_3_146	3300034012	Freshwater	PGAEFAKRVANEVMNSQIVTLPPGMDINDYYLANGIEATRELLIGRQ
Ga0335005_0763417_2_142	3300034022	Freshwater	EFSKRVAQEIPNSTIVTLPPSMDVNDFYLANGADATKALLLGEKDE
Ga0335019_0269107_1_153	3300034066	Freshwater	NPGAEFSKRVQQEVLNGTIVHLPPNMDINDYYLAYGAEATKTLLVGEAIG
Ga0335012_0406047_2_160	3300034093	Freshwater	GSNPGAEFAKRVANEVMNSQIVTLPPGMDINDYYLANGIDATRKLLIGESNV
Ga0335030_0433464_686_844	3300034103	Freshwater	GTNPGAEFSKRVASEILNSVIVTLPPGMDINDHYLKFGADATRALLVGEKGE
Ga0335031_0355355_816_935	3300034104	Freshwater	NEILNSTIVTLPPGMDINDYYLAHGAEATKTLLVGERNE
Ga0335031_0745133_386_556	3300034104	Freshwater	KEDGSNPGAEFAKRVANEVMNSVIVTLSPGMDINDYYLANGADATRALLVGEPKGE
Ga0335036_0778543_425_556	3300034106	Freshwater	KRVANEILNSTIVTLPPGMDINDHYLAYGADATRTLLVGEPKG
Ga0335060_0342985_650_805	3300034122	Freshwater	NPGAEFSKRVASEVMNSTIVSLPAGMDITDYYLANGAEATRKILIGGYAGE
Ga0335007_0240394_1_141	3300034283	Freshwater	EFAKRVAQEVSNSTIVTLPPSMDINDFYLTKGLDATKALLLGQKDE
Ga0335007_0264971_2_163	3300034283	Freshwater	DGSNPGADFSKRVSQEVLNGTIVHLPPNMDINDYYLAYGAQATKTLLVGEGNG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters