Metagenome / Metatranscriptome Family F055292

Basic Information
Family ID	F055292
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	42 residues
Representative Sequence	PPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASMQAVT
Number of Associated Samples	129
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.16 %
% of genes near scaffold ends (potentially truncated)	98.56 %
% of genes from short scaffolds (< 2000 bps)	86.33 %
Associated GOLD sequencing projects	122
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Most Common Taxonomy
Group	Bacteria (90.647 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (10.072 % of family members)
Environment Ontology (ENVO)	Unclassified (20.144 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.396 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF08388	GIIM	10.07
PF00078	RVT_1	9.35
PF07859	Abhydrolase_3	1.44
PF00589	Phage_integrase	1.44
PF08031	BBE	1.44
PF13411	MerR_1	0.72
PF00171	Aldedh	0.72
PF12704	MacB_PCD	0.72
PF13751	DDE_Tnp_1_6	0.72
PF07632	DUF1593	0.72
PF00248	Aldo_ket_red	0.72
PF00005	ABC_tran	0.72
PF01558	POR	0.72
PF01229	Glyco_hydro_39	0.72
PF00400	WD40	0.72
PF00108	Thiolase_N	0.72
PF05016	ParE_toxin	0.72
PF13847	Methyltransf_31	0.72
PF01436	NHL	0.72
PF00072	Response_reg	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	1.44
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	1.44
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.72
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.72
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.72
COG1014	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit	Energy production and conversion [C]	0.72
COG3664	Beta-xylosidase	Carbohydrate transport and metabolism [G]	0.72
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.65 %
Unclassified	root	N/A	9.35 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.65 %
Unclassified	root	N/A	9.35 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.65 %
Unclassified	root	N/A	9.35 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	52.52 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.67 %
Unclassified	root	N/A	9.35 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	28.06 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.51 %
Unclassified	root	N/A	9.35 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7.19 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.44 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	28.06 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.51 %
Unclassified	root	N/A	9.35 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5.04 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.44 %
Betaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis	1.44 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	28.06 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.51 %
Unclassified	root	N/A	9.35 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	5.04 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	1.44 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.44 %

Name	Rank	Taxonomy	Distribution
Acidisarcina	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina	19.42 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.51 %
Unclassified	root	N/A	9.35 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	3.60 %
Candidatus Accumulibacter vicinus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter vicinus	1.44 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.44 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.72 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.72 %

Name	Rank	Taxonomy	Distribution
Acidisarcina polymorpha	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	19.42 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.51 %
Unclassified	root	N/A	9.35 %
unclassified Cupriavidus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus	3.60 %
Candidatus Accumulibacter vicinus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter vicinus	1.44 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.44 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.72 %
Granulicella sibirica	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella sibirica	0.72 %

Name	Rank	Taxonomy	Distribution
Acidisarcina polymorpha	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	19.42 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.51 %
Unclassified	root	N/A	9.35 %
Cupriavidus sp. UYPR2.512	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. UYPR2.512	3.60 %
Candidatus Accumulibacter vicinus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter vicinus	1.44 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.44 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.72 %
Granulicella sibirica	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella sibirica	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16823381	Not Available	1836	Open in IMG/M
3300000041\|ARcpr5oldR_c003033	All Organisms → cellular organisms → Bacteria	1506	Open in IMG/M
3300000955\|JGI1027J12803_102663905	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300001401\|JGI20189J14885_1034170	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300001652\|JGI20274J16320_100092	All Organisms → cellular organisms → Bacteria	2000	Open in IMG/M
3300002245\|JGIcombinedJ26739_100188982	All Organisms → cellular organisms → Bacteria → Acidobacteria	1948	Open in IMG/M
3300002560\|JGI25383J37093_10138466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	658	Open in IMG/M
3300003505\|JGIcombinedJ51221_10026324	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2085	Open in IMG/M
3300003885\|Ga0063294_10776401	Not Available	562	Open in IMG/M
3300004064\|Ga0055479_10193765	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300004082\|Ga0062384_100217407	Not Available	1139	Open in IMG/M
3300004082\|Ga0062384_101389259	Not Available	517	Open in IMG/M
3300004101\|Ga0058896_1027716	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	641	Open in IMG/M
3300004107\|Ga0065179_1236094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. UYPR2.512	529	Open in IMG/M
3300004120\|Ga0058901_1523310	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1317	Open in IMG/M
3300004139\|Ga0058897_11189035	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	595	Open in IMG/M
3300004476\|Ga0068966_1008186	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300004611\|Ga0068925_1369635	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	563	Open in IMG/M
3300004613\|Ga0068937_1392931	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	608	Open in IMG/M
3300004631\|Ga0058899_10032132	All Organisms → cellular organisms → Bacteria → Acidobacteria	1918	Open in IMG/M
3300004631\|Ga0058899_10184400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	608	Open in IMG/M
3300004643\|Ga0062591_101797124	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300005171\|Ga0066677_10068742	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1815	Open in IMG/M
3300005172\|Ga0066683_10434691	All Organisms → cellular organisms → Bacteria → Acidobacteria	807	Open in IMG/M
3300005184\|Ga0066671_10129242	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
3300005187\|Ga0066675_10258525	All Organisms → cellular organisms → Bacteria → Acidobacteria	1246	Open in IMG/M
3300005332\|Ga0066388_100394076	All Organisms → cellular organisms → Bacteria	2030	Open in IMG/M
3300005332\|Ga0066388_107670094	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella sibirica	541	Open in IMG/M
3300005336\|Ga0070680_100035893	All Organisms → cellular organisms → Bacteria	4003	Open in IMG/M
3300005436\|Ga0070713_101648344	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300005437\|Ga0070710_11377976	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	527	Open in IMG/M
3300005454\|Ga0066687_10091668	All Organisms → cellular organisms → Bacteria → Acidobacteria	1515	Open in IMG/M
3300005459\|Ga0068867_100334579	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1259	Open in IMG/M
3300005536\|Ga0070697_100531100	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	1031	Open in IMG/M
3300005542\|Ga0070732_10600237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	668	Open in IMG/M
3300005548\|Ga0070665_102383673	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	532	Open in IMG/M
3300005554\|Ga0066661_10610127	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	647	Open in IMG/M
3300005568\|Ga0066703_10613961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. UYPR2.512	632	Open in IMG/M
3300005574\|Ga0066694_10041726	All Organisms → cellular organisms → Bacteria → Acidobacteria	2071	Open in IMG/M
3300005602\|Ga0070762_10253240	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	1095	Open in IMG/M
3300005602\|Ga0070762_11075142	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300005921\|Ga0070766_10053744	All Organisms → cellular organisms → Bacteria	2271	Open in IMG/M
3300006047\|Ga0075024_100048470	All Organisms → cellular organisms → Bacteria	1771	Open in IMG/M
3300006050\|Ga0075028_101095060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter vicinus	500	Open in IMG/M
3300006795\|Ga0075520_1190073	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300006796\|Ga0066665_10133919	All Organisms → cellular organisms → Bacteria → Acidobacteria	1863	Open in IMG/M
3300006797\|Ga0066659_10264620	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300006854\|Ga0075425_100206007	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2260	Open in IMG/M
3300006854\|Ga0075425_101130329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	891	Open in IMG/M
3300006854\|Ga0075425_101288923	All Organisms → cellular organisms → Bacteria → Acidobacteria	829	Open in IMG/M
3300006871\|Ga0075434_101939891	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	594	Open in IMG/M
3300006893\|Ga0073928_10285843	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	1245	Open in IMG/M
3300008002\|Ga0100390_10267799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. UYPR2.512	859	Open in IMG/M
3300009088\|Ga0099830_11425907	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	576	Open in IMG/M
3300009137\|Ga0066709_103370228	Not Available	581	Open in IMG/M
3300009523\|Ga0116221_1273679	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	730	Open in IMG/M
3300009551\|Ga0105238_10880719	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300009700\|Ga0116217_10255991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1135	Open in IMG/M
3300010366\|Ga0126379_10033194	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4062	Open in IMG/M
3300010366\|Ga0126379_12483119	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300010376\|Ga0126381_100058397	All Organisms → cellular organisms → Bacteria	4755	Open in IMG/M
3300011089\|Ga0138573_1172882	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300011120\|Ga0150983_15782633	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	612	Open in IMG/M
3300012189\|Ga0137388_10823123	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300012198\|Ga0137364_11375817	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	523	Open in IMG/M
3300012205\|Ga0137362_10430113	Not Available	1143	Open in IMG/M
3300012349\|Ga0137387_11177795	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300012390\|Ga0134054_1254515	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	761	Open in IMG/M
3300012406\|Ga0134053_1134871	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	591	Open in IMG/M
3300012508\|Ga0157315_1007562	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	885	Open in IMG/M
3300012927\|Ga0137416_10621593	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	943	Open in IMG/M
3300014495\|Ga0182015_10964945	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300015241\|Ga0137418_10997393	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	606	Open in IMG/M
3300016270\|Ga0182036_10128330	All Organisms → cellular organisms → Bacteria	1772	Open in IMG/M
3300016319\|Ga0182033_10084149	All Organisms → cellular organisms → Bacteria	2288	Open in IMG/M
3300016371\|Ga0182034_11446505	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300016422\|Ga0182039_10348904	All Organisms → cellular organisms → Bacteria → Acidobacteria	1242	Open in IMG/M
3300017822\|Ga0187802_10260834	Not Available	672	Open in IMG/M
3300018006\|Ga0187804_10086327	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300018007\|Ga0187805_10245880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	820	Open in IMG/M
3300018433\|Ga0066667_11390437	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300019194\|Ga0184586_126718	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	634	Open in IMG/M
3300019885\|Ga0193747_1035948	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1234	Open in IMG/M
3300020234\|Ga0212227_1277731	All Organisms → cellular organisms → Bacteria	1360	Open in IMG/M
3300021178\|Ga0210408_10055043	All Organisms → cellular organisms → Bacteria → Acidobacteria	3107	Open in IMG/M
3300021402\|Ga0210385_10151077	All Organisms → cellular organisms → Bacteria	1661	Open in IMG/M
3300021402\|Ga0210385_10438138	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	985	Open in IMG/M
3300022195\|Ga0222625_1091937	All Organisms → cellular organisms → Bacteria → Proteobacteria	672	Open in IMG/M
3300022524\|Ga0224534_1047591	Not Available	905	Open in IMG/M
3300024288\|Ga0179589_10004652	All Organisms → cellular organisms → Bacteria → Acidobacteria	3606	Open in IMG/M
3300025477\|Ga0208192_1063067	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	711	Open in IMG/M
3300025650\|Ga0209385_1128312	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	781	Open in IMG/M
3300025811\|Ga0210004_1167738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. UYPR2.512	529	Open in IMG/M
3300025931\|Ga0207644_11291740	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	613	Open in IMG/M
3300025935\|Ga0207709_10088330	Not Available	2018	Open in IMG/M
3300025949\|Ga0207667_11026970	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	811	Open in IMG/M
3300026324\|Ga0209470_1076201	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300026515\|Ga0257158_1022186	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300026527\|Ga0209059_1143317	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	879	Open in IMG/M
3300026547\|Ga0209156_10320174	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	693	Open in IMG/M
3300026557\|Ga0179587_10336269	All Organisms → cellular organisms → Bacteria → Acidobacteria	977	Open in IMG/M
3300027174\|Ga0207948_1001284	All Organisms → cellular organisms → Bacteria	2720	Open in IMG/M
3300027527\|Ga0209684_1052788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. UYPR2.512	627	Open in IMG/M
3300027565\|Ga0209219_1008811	All Organisms → cellular organisms → Bacteria → Acidobacteria	2286	Open in IMG/M
3300027783\|Ga0209448_10099163	All Organisms → cellular organisms → Bacteria → Acidobacteria	976	Open in IMG/M
3300027869\|Ga0209579_10554270	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300027879\|Ga0209169_10148871	Not Available	1219	Open in IMG/M
3300027889\|Ga0209380_10038442	All Organisms → cellular organisms → Bacteria	2711	Open in IMG/M
3300027911\|Ga0209698_10604631	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	842	Open in IMG/M
3300028015\|Ga0265353_1033902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter vicinus	514	Open in IMG/M
3300028047\|Ga0209526_10476104	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300028560\|Ga0302144_10134358	All Organisms → cellular organisms → Bacteria → Proteobacteria	799	Open in IMG/M
3300028867\|Ga0302146_10366979	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	551	Open in IMG/M
3300029994\|Ga0302283_1189135	All Organisms → cellular organisms → Bacteria → Acidobacteria	773	Open in IMG/M
3300030618\|Ga0311354_10800592	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	889	Open in IMG/M
3300030760\|Ga0265762_1052637	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	821	Open in IMG/M
3300030778\|Ga0075398_11786054	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300030971\|Ga0075375_11851506	Not Available	910	Open in IMG/M
3300031128\|Ga0170823_17423416	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	630	Open in IMG/M
3300031236\|Ga0302324_100043500	All Organisms → cellular organisms → Bacteria → Proteobacteria	8224	Open in IMG/M
3300031446\|Ga0170820_10309636	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	509	Open in IMG/M
3300031671\|Ga0307372_10531777	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	548	Open in IMG/M
3300031754\|Ga0307475_10122369	All Organisms → cellular organisms → Bacteria → Acidobacteria	2050	Open in IMG/M
3300031833\|Ga0310917_10917167	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	589	Open in IMG/M
3300031845\|Ga0318511_10066167	All Organisms → cellular organisms → Bacteria → Proteobacteria	1484	Open in IMG/M
3300031890\|Ga0306925_11043068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	830	Open in IMG/M
3300031910\|Ga0306923_10302821	All Organisms → cellular organisms → Bacteria → Acidobacteria	1826	Open in IMG/M
3300031946\|Ga0310910_11064853	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300031946\|Ga0310910_11176610	All Organisms → cellular organisms → Bacteria → Proteobacteria	595	Open in IMG/M
3300031954\|Ga0306926_10285296	All Organisms → cellular organisms → Bacteria	2044	Open in IMG/M
3300032066\|Ga0318514_10331545	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300032090\|Ga0318518_10057050	All Organisms → cellular organisms → Bacteria → Proteobacteria	1872	Open in IMG/M
3300032091\|Ga0318577_10357554	Not Available	698	Open in IMG/M
3300032180\|Ga0307471_100460972	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1412	Open in IMG/M
3300032180\|Ga0307471_100792488	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1114	Open in IMG/M
3300032205\|Ga0307472_101102346	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	751	Open in IMG/M
3300032261\|Ga0306920_101853194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	849	Open in IMG/M
3300032272\|Ga0316189_11523392	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300032805\|Ga0335078_12203079	Not Available	581	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.37%
Host-Associated	Host-Associated	8.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.70%
Aquatic	Environmental → Aquatic	13.67%
Plants	Host-Associated → Plants	8.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.38%
Freshwater	Environmental → Aquatic → Freshwater	7.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.76%
Peat	Environmental → Terrestrial → Peat	4.32%
Marine	Environmental → Aquatic → Marine	2.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.88%
Sediment	Environmental → Aquatic → Sediment	2.16%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.24%
Loam	Environmental → Terrestrial → Soil → Loam	17.99%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.04%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.32%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.16%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.16%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.16%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.44%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.44%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.72%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.72%
Coastal	Environmental → Aquatic → Marine → Coastal	0.72%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.72%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.72%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.72%
Clay	Environmental → Terrestrial → Soil → Clay	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.42%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.39%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.23%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.16%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.16%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.16%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.16%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.16%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.44%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.72%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.72%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.72%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.72%
Black Smokers	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers	0.72%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.72%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.72%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.72%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.72%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.63%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.76%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.32%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.88%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.16%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.16%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.16%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.16%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.16%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.16%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.16%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.16%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	1.44%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.44%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.44%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.44%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.44%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.44%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.44%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.72%
Aquifer	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer	0.72%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment	0.72%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	0.72%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.72%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Hydrothermal Vents	0.72%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.72%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.72%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.72%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.72%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.72%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001401	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012	Environmental	Open in IMG/M
3300001652	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300003885	Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean - Sample 1	Environmental	Open in IMG/M
3300004064	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWC_D1	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004101	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF228 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004107	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/8/14 3 um filter (version 2)	Environmental	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004476	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004611	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 10 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004613	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 25 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300008002	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-14	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011089	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012390	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012406	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019194	Soil microbial communities from Bohemian Forest, Czech Republic ? CSE1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300020234	Deep-sea sediment microbial communities from the Kermadec Trench, Pacific Ocean - N074	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022524	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025477	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150 (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300025811	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/8/14 3 um filter (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027174	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028015	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE6	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental	Open in IMG/M
3300028867	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_3	Environmental	Open in IMG/M
3300029994	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_4	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030778	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030971	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031671	Soil microbial communities from Risofladan, Vaasa, Finland - OX-1	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032272	Coastal sediment microbial communities from Maine, United States - Lowes Cove worm burrow	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055292

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03003940	2088090014	Soil	GTGFAPPGSNRSGGGGNEAVGASGVEGRLGDLASMQAVT
ARcpr5oldR_0030331	3300000041	Arabidopsis Rhizosphere	NQSGGRGNEAVGASGVEGHLGDLASMEAVTCSES*
JGI1027J12803_1026639052	3300000955	Soil	RVQVPPGNWFAPPGSNRSSGRGDEAAGASGVEGREGDLASMQAVM*
JGI20189J14885_10341701	3300001401	Arctic Peat Soil	PAGSNRSSRGGNEAAEAFGVEGPARDLASTQAVT*
JGI20274J16320_1000922	3300001652	Forest Soil	RWSTAGVNPPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASMQAVT*
JGIcombinedJ26739_1001889821	3300002245	Forest Soil	NPPGNWFAPPGSNQSSSGGNETAEASGVEGRFGDLASVQAVT*
JGI25383J37093_101384661	3300002560	Grasslands Soil	VRRERRWSTAGVNPPGNWFAPPGSNQSSSGGNETAEASGAEGRYGDSASM
JGIcombinedJ51221_100263241	3300003505	Forest Soil	AVKALVHSGGYPPGNWFAPPGSNQSSGGGNETAGASGAEGRKGDSASVQAVT*
Ga0063294_107764011	3300003885	Hydrothermal Vents	PATVVPAGSNRSGDGGNNIVEASDVKGPLGGSASWQAVT*
Ga0055479_101937651	3300004064	Natural And Restored Wetlands	HPATVAPAGSNRSGCGGDEAVKASGVEGHYSDLASIQAITSSER*
Ga0062384_1002174071	3300004082	Bog Forest Soil	RELNPPGNWFAPPGSNRSSGNEAAEVFGVEGRIGDSASMQAVT*
Ga0062384_1013892591	3300004082	Bog Forest Soil	RGLSPPGNWFAPPGSNRSSSGGNETAEASGAEGRFGDSASMQAVM*
Ga0058896_10277161	3300004101	Forest Soil	WSTAGVYPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASMQAVT*
Ga0065179_12360941	3300004107	Groundwater	KSHPATFAPAGSNQSSHGGNEMAEASGVEGHIGDLASVQAVT*
Ga0058901_15233103	3300004120	Forest Soil	PQRELNPPGNWFAPPGSNQSSGGGNETAGASGAEGRKGDSASVQAVT*
Ga0058897_111890351	3300004139	Forest Soil	LNPPGNWFAPPGSNRSSGGGNEAAEAFGEEGRIGDSASMQAVT*
Ga0068966_10081861	3300004476	Peatlands Soil	FAPPGSNQSGGGGNEAVGASGVEGHLGDLASMWAVTCSER*
Ga0068925_13696352	3300004611	Peatlands Soil	PGNCFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASVQAVT*
Ga0068937_13929311	3300004613	Peatlands Soil	NPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSAIVQA*
Ga0058899_100321322	3300004631	Forest Soil	WSTAGVYPPGNWFAPPGSNQSSGGGNETAGASGAEGRKGDSASVQAVT*
Ga0058899_101844002	3300004631	Forest Soil	NPPGNWFAPPGSNQSSSGGNELLKPLVQESLGDLANVQAVT*
Ga0062591_1017971242	3300004643	Soil	NGCETHPATVAPAGSNRSGDGGNEVTEAFGVEGRLGDLASMQAVT*
Ga0066677_100687423	3300005171	Soil	VRRERRWSTAGVYPPGNWFAPPGSNQSSSGGNEVAEASGAEGR*
Ga0066683_104346911	3300005172	Soil	LPPGNWFAPPGSNRSGSGGNEAVGASGIEGRLGDLASVQAIT*
Ga0066671_101292424	3300005184	Soil	STAGVYPPGNWFAPPGSNLSSSGGNETAEASGAEGRIGDLASVQAVT*
Ga0066675_102585251	3300005187	Soil	GVYPPGNWFAPPGSNLSSSGGNETAEASGAEGRIGDLASVQAVT*
Ga0066388_1003940762	3300005332	Tropical Forest Soil	VRRERRWSTAGVYPPGSWFTPPGSNQSSSGGNETAGASGAESRYGDLASMQAVT*
Ga0066388_1076700941	3300005332	Tropical Forest Soil	DPPGNWFAPLGSNRHSSEGNEAAGAVDGKGSLSDSASVQAVT*
Ga0070680_1000358936	3300005336	Corn Rhizosphere	PATVAPAGSNRSGDGGNEVTEAFGVEGRNGDSASMQAVT*
Ga0070713_1016483441	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	PQRELNPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASMQAVT*
Ga0070710_113779761	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	PGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASVQAVT*
Ga0066687_100916681	3300005454	Soil	WSTAGVYPPGNWFAPPGSNQSSSGGNETAEASGAEGRKGDLASVQAVT*
Ga0068867_1003345791	3300005459	Miscanthus Rhizosphere	VPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASMQAVT*
Ga0070697_1005311002	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	ELNPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASMQAVT*
Ga0070732_106002371	3300005542	Surface Soil	APPGSNRSGGEGNEAVGASGVEGRIGDSASMQAVT*
Ga0070665_1023836733	3300005548	Switchgrass Rhizosphere	PPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASVQAVT*
Ga0066661_106101272	3300005554	Soil	TAGVYPPGNWFAPPGSNQSSSGGNETAEASGVEGREGGLASVQAVT*
Ga0066703_106139611	3300005568	Soil	KALVHSGGYPPGNWFAPPGSNQSSSGGNETAEASGAEGRYGDLASVQAVT*
Ga0066694_100417263	3300005574	Soil	KALVHSGGNPPGNWFAPPGSNLSSSGGNETAEASGAEGRIGDLASVQAVT*
Ga0070762_102532404	3300005602	Soil	PSGNWFAPPGSNRSSSGGNEAAEAFGVEGRIGDLASMQAVT*
Ga0070762_110751421	3300005602	Soil	NRSGGGGNKAVGASGVEGRYGDLSMQAATTVGER*
Ga0070766_100537444	3300005921	Soil	GVYPPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASVQAVT*
Ga0075024_1000484701	3300006047	Watersheds	YPPGNWFAPPGSNQSSSGGNETAEASGPEGRNGDLASVQAVT*
Ga0075028_1010950601	3300006050	Watersheds	IAPAGSNRSSRGGNEAAEAFGVEGPERDLANMQAVT*
Ga0075520_11900732	3300006795	Arctic Peat Soil	PQRETDPPGNWFAPPGSNRGSGGGNEAAEAFGVEGRDGDLASVQAIT*
Ga0066665_101339191	3300006796	Soil	NPPGNWFAPPGSNQSSSGGNETAEASGAEGRYGDSASMQAVT*
Ga0066659_102646203	3300006797	Soil	VRRERRWSTAGVNPPGNWFAPPGSNQSSSGGNETAEASGAEGRYGDSASMQAV
Ga0075425_1002060072	3300006854	Populus Rhizosphere	RELNPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASMQAVT*
Ga0075425_1011303291	3300006854	Populus Rhizosphere	RPGTGFAPPGSNQSGGGGNEAVGASGVEGHIGDLASMQAAT*
Ga0075425_1012889231	3300006854	Populus Rhizosphere	GGPQRELNPPGNWFAPPGSNRSSDGGNEAAEAFGVEGRIDDSASMQAVT*
Ga0075434_1019398911	3300006871	Populus Rhizosphere	WFVPPGSNRSSGGGNEAAGAFGVEGRIGDSASMQAVT*
Ga0073928_102858434	3300006893	Iron-Sulfur Acid Spring	VEVLPGSWFVPPGNNRSSGRGNEAAEAFGAEGRKGDSVSMQAVTR
Ga0100390_102677991	3300008002	Aquifer	TFAPAGSNQSSHGGNEVAEASGVEGHIGDLASVQAVT*
Ga0099830_114259071	3300009088	Vadose Zone Soil	NLPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASMQAVT*
Ga0066709_1033702281	3300009137	Grasslands Soil	PGNWFAPPGSNRSSGGGNEAAGAFGVEGRIGDSASVQAVT*
Ga0116221_12736793	3300009523	Peatlands Soil	FAPPGSNQSGDRGNEVVGASGVEGRLGDLASMQAVT*
Ga0105238_108807192	3300009551	Corn Rhizosphere	CETHPATVAPAGSNRSGDGGNEVTEAFGVEGRNGDSASMQAVT*
Ga0116217_102559911	3300009700	Peatlands Soil	YPPGNWFAPPGSNQSSSGGNETAEASGAEGRKGDLASVQAVT*
Ga0126379_100331944	3300010366	Tropical Forest Soil	ALAGSNRSSGGGSEVAGAFGVEGRIGDLASMQAVT*
Ga0126379_124831192	3300010366	Tropical Forest Soil	DGPQRESDPPGNWFVPPGSNQSSGGGNETAEASGAEGRLSDSVSRQAVT*
Ga0126381_1000583977	3300010376	Tropical Forest Soil	GSWFVPPGSNQSSGGGNETAEASGAEGRKGDQASMQAVT*
Ga0138573_11728821	3300011089	Peatlands Soil	SNQSGGGGNEAVGASGVEGHLGDLASMWAVTCSER*
Ga0150983_157826332	3300011120	Forest Soil	PPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSVSMQAVT*
Ga0137388_108231232	3300012189	Vadose Zone Soil	WFVPPGSNRSSSGGNEAAEAFGVEGRIGDSVSMQAVT*
Ga0137364_113758171	3300012198	Vadose Zone Soil	APPGSNQSSSGGNETAEASGAEGRYGDLASVQAVT*
Ga0137362_104301131	3300012205	Vadose Zone Soil	NWFAPPGSNQSSGGGNETAEASGAEGREGDLASMKAVT*
Ga0137387_111777952	3300012349	Vadose Zone Soil	STAGVYPPGNWFAPPGSNQSSSGGNETAEASGAEGRKGDLASVQAVT*
Ga0134054_12545151	3300012390	Grasslands Soil	NGCESHPATVAPAGSNRSGDGGNEITEAFGAEGRLGDLASMQAVT*
Ga0134053_11348711	3300012406	Grasslands Soil	LFAPPGSNRSGGEGNEAVGASGVEGRVGDLASMQAVT*
Ga0157315_10075622	3300012508	Arabidopsis Rhizosphere	FAPPGSNRSGGGGNETVGASGVEGRLGDLASMQAVT*
Ga0137416_106215933	3300012927	Vadose Zone Soil	VGLNPPGNWFAPPGRNRSSGGGNEPADAFGVEGRIGDSASM
Ga0182015_109649451	3300014495	Palsa	PGNWFAPPGSNQSSSGGNEAAEASGEEGREGDLASV*
Ga0137418_109973931	3300015241	Vadose Zone Soil	DSGNWFVPPGNNRSSGEGNEAAEAFGGEGRKGDLVSVQAIT*
Ga0182036_101283303	3300016270	Soil	STAGVYPPGNWFAPPGSNQSSSGGNETAEASGVEGRNGDLASMQAVT
Ga0182033_100841491	3300016319	Soil	GNWFVPPGSNQSSGGGNETAETSGAEGRSSDLVSRQAVT
Ga0182034_114465052	3300016371	Soil	FVPPGSNQSSGGGNETAEASGAEGRKGDEASMQAVK
Ga0182039_103489041	3300016422	Soil	KSRPGTGFAPPGSNRSGGGENEAVGASGVEGRIGDLASMQAVT
Ga0187802_102608342	3300017822	Freshwater Sediment	FAPPGSNRSSGLGNEAVGAFGVKDRISDPASMQVVM
Ga0187804_100863272	3300018006	Freshwater Sediment	VRRERRWSTAGVYPPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASM
Ga0187805_102458803	3300018007	Freshwater Sediment	TAGVYPPGNWFAPPGSNQSSSGGNETAEASGAEGRNGDLASVQAVT
Ga0066667_113904371	3300018433	Grasslands Soil	PVRRERRRSTAGVYPPGNWFAPPGSNQSSSGGNETAEASGAEGRYGDLASVQAVT
Ga0184586_1267182	3300019194	Soil	GGPQRELNPPGNWFAPPGSNQSSSGGNETAEASGVEGRKGDLASVQAVT
Ga0193747_10359481	3300019885	Soil	AGPQRVKVPSGNWFVPPGNNRSSGGGNEAAEAFGGEGRKGDLVSVQAIT
Ga0212227_12777312	3300020234	Sediment	ATVAPAGSNRSSSGGNEAAEASGVEGHFGDSASMQAVT
Ga0210408_100550435	3300021178	Soil	PQREANPPGNWFAPPGSNQSSSGGNETAGASGVEGRLGDLASMQAVT
Ga0210385_101510771	3300021402	Soil	NWFAPPGSNQSSRGGNETAEASGAEGREGDLASMQAVT
Ga0210385_104381382	3300021402	Soil	RWSTAGVYPPGNWFAPPGSNQSSRGGNETAEASSAEGREGDLASMQAVT
Ga0222625_10919372	3300022195	Groundwater Sediment	TVAPAGSNRSNGGGNEAVEAFGVEGPSRDLAIVQAVM
Ga0224534_10475911	3300022524	Soil	APPGNNRSVGGGNEADGAFDEEGRLSDLVSVQAVT
Ga0179589_100046521	3300024288	Vadose Zone Soil	IPPGSWFVPPGSNRSSGGGNEAAEAFGVEGRIGDSASMQAVT
Ga0208192_10630671	3300025477	Peatland	PPGNWIAPPGSNRRGRGGNESAEASGVESREGDLAIMQAVT
Ga0209385_11283121	3300025650	Arctic Peat Soil	IPPGNWIAPPGSNRSSSGGNETAEAFDVKGRVGDLAIMQAVM
Ga0210004_11677382	3300025811	Groundwater	KSHPATFAPAGSNQSSHGGNEMAEASGVEGHIGDLASVQAVT
Ga0207644_112917401	3300025931	Switchgrass Rhizosphere	IAPPGSNRSGGEGNEAVGASGIEGHLGDLASMQAVT
Ga0207709_100883303	3300025935	Miscanthus Rhizosphere	RTHPATVAPAGSNRSGDGGNEITEAFGVEGRYGDLASMQAVT
Ga0207667_110269702	3300025949	Corn Rhizosphere	LQRVQVPPGNWFAPPGSNRSGGEGNEAVGASGIEGHLGDLASMQAVT
Ga0209470_10762011	3300026324	Soil	ELFAPPGSNRSGGEGNEAVGASGVEGRLGDLASMQAVT
Ga0257158_10221862	3300026515	Soil	VHSGVNPPGNWFAPPGSNQSSSGGNETAEASGVEGRKDDLASVQAVT
Ga0209059_11433172	3300026527	Soil	PGNCFAPPGSNRSGGGGNEAVGACGVEGRLGDLASMQAVR
Ga0209156_103201742	3300026547	Soil	TGFAPPGSNRSGGGGNETVGASGVEGHVGDLASMQAVT
Ga0179587_103362692	3300026557	Vadose Zone Soil	GGPQRELNLPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASVQAVT
Ga0207948_10012841	3300027174	Forest Soil	NPPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASMQAVT
Ga0209684_10527883	3300027527	Tropical Forest Soil	KGDGPQRESDPPGNWFVPPGSNQSSGGGNETAEASGAEGRLSDSVSRQAVT
Ga0209219_10088111	3300027565	Forest Soil	NWFAPPGSSRNSGGGDEAAEAFDGEGRNGDLASVQAVK
Ga0209448_100991634	3300027783	Bog Forest Soil	QRELNPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASMQAVT
Ga0209579_105542701	3300027869	Surface Soil	RVRRESCWSTAGANPPVDWSAPPGSNQSSSGGNETAEASGVEGLKGDLASVQVVT
Ga0209169_101488711	3300027879	Soil	IAPPGSSGSSGGGDEAAEAFGVEGRVGDSASMQAVT
Ga0209380_100384421	3300027889	Soil	PPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASVQAVT
Ga0209698_106046312	3300027911	Watersheds	NWFAPPGSNRSGGGGNEAVGASGVEGRLGDLASMQAVT
Ga0265353_10339021	3300028015	Soil	PPGSNRSSRGGNEAAGASGVEGRSGDLASMQAVME
Ga0209526_104761042	3300028047	Forest Soil	PPGNWFAPPGSNQSSSGGNETAEASGVEGRKGDLASVQAVT
Ga0302144_101343583	3300028560	Bog	IFAPAGSNRSSRGGNEAAEAFGVEGPERDLANMQAVM
Ga0302146_103669792	3300028867	Bog	APPGSNRSSGGGNEAAEASGVEGREGDLASMQAVM
Ga0302283_11891351	3300029994	Fen	NWIAPPGSNRSSGGSNEAAEASDVEGREGDLASMQAVM
Ga0311354_108005923	3300030618	Palsa	PGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSVSMQAVT
Ga0265762_10526373	3300030760	Soil	GGPQRELIPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASM
Ga0075398_117860542	3300030778	Soil	PGNWFAPPGSNQSSSGGNETAEASGAESRKGDLASMQAVT
Ga0075375_118515062	3300030971	Soil	PATVAPAGSNRSGDGGNEVTEAFGVEGRIGDLASMQAVT
Ga0170823_174234161	3300031128	Forest Soil	PPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASMQAVT
Ga0302324_1000435006	3300031236	Palsa	RPAIVAPAGSNRSSRGGNEATEAFGVEGPERDLANMQAVT
Ga0170820_103096361	3300031446	Forest Soil	RLRVKVPPGNWFAPPGSNRSGGGGNEAVGASGVEGHLGDLASMQAVT
Ga0307372_105317771	3300031671	Soil	WFAPPGSNRSSGLGNETAEASGVEGREGDSASVQAVM
Ga0307475_101223691	3300031754	Hardwood Forest Soil	RRERCWSTAGVYPPGNWFAPPGSNQSSSGGNETAEASGVEGREGDLASMQAVT
Ga0310917_109171671	3300031833	Soil	ENWFVPLGSNRSGGGGNKAVGASGVEGRYGDLASM
Ga0318511_100661671	3300031845	Soil	LPPGNWFAPPGNNRSGGEGNQAVGAFGVEGHVGDSVSVQAVT
Ga0306925_110430683	3300031890	Soil	GSWFAPPSSNQSGSGGNEAAEASGVEGRFGDSASRQAVT
Ga0306923_103028211	3300031910	Soil	GDGPQRELNPSGNWFVPPGSNQSSGGGNETAEASGAEGRKGDQASMQAVK
Ga0310910_110648531	3300031946	Soil	FAPPGSNRSGGGGNETVGASGVEGHLGDLASMQAVT
Ga0310910_111766101	3300031946	Soil	PQRESNPPGNWFAPSGSNQSGGGGNEAAEASGAEGHKGD
Ga0306926_102852964	3300031954	Soil	NWFAPPGSNQSSSGGNETAEASGVEGRNGDLASMQAVT
Ga0318514_103315451	3300032066	Soil	PQRELDPPGNWFVPPGSNQSSGGGNETAEASGAEGRLSDSVSRQAVT
Ga0318518_100570501	3300032090	Soil	FAPPGNNRSGGEGNQAVGAFGVEGHVGDSVSVQAVT
Ga0318577_103575541	3300032091	Soil	GINPRGNWFAPPGSNRSSGLGNEAVGAFGIKDRISDSASMQVVM
Ga0307471_1004609721	3300032180	Hardwood Forest Soil	TPERELVAPPGSNRSGSGGNEAVGAFGVKGRLASVQAIM
Ga0307471_1007924881	3300032180	Hardwood Forest Soil	YPPENWFAPPGSNQSSSGGNETAEASGAEGRKGDLASVQAVT
Ga0307472_1011023461	3300032205	Hardwood Forest Soil	VKVPPENWFVPLGSNRSGGGGNKAVGASGVEGHMGDLASM
Ga0306920_1018531943	3300032261	Soil	APPSSNQSGSGGNEAAEASGVEGRFGDSASRQAVT
Ga0316189_115233921	3300032272	Worm Burrow	QSHPASVAPAGSNRSGGGGNEAIEAFDVEGRISDLATMRAVTSSER
Ga0335078_122030791	3300032805	Soil	WIAPPGSNRSSGRGNEAAEASSVEGREGDLASMRAVM

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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