Metagenome / Metatranscriptome Family F055253

Basic Information
Family ID	F055253
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	61 residues
Representative Sequence	MACARCGGFLVIEEWDGSVSSFREKQLRSMECVRCVNCGSIDDSVILANRLIERSTICCTTH
Number of Associated Samples	120
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.68 %
% of genes near scaffold ends (potentially truncated)	15.83 %
% of genes from short scaffolds (< 2000 bps)	74.10 %
Associated GOLD sequencing projects	116
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Most Common Taxonomy
Group	Bacteria (64.029 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.072 % of family members)
Environment Ontology (ENVO)	Unclassified (28.058 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (32.374 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.67% β-sheet: 17.78% Coil/Unstructured: 65.56%
Feature Viewer

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Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF07043	DUF1328	40.29
PF01329	Pterin_4a	13.67
PF04120	Iron_permease	5.04
PF00970	FAD_binding_6	3.60
PF00175	NAD_binding_1	2.16
PF01872	RibD_C	1.44
PF01527	HTH_Tnp_1	1.44
PF01594	AI-2E_transport	1.44
PF13545	HTH_Crp_2	1.44
PF12732	YtxH	1.44
PF00565	SNase	0.72
PF07730	HisKA_3	0.72
PF13599	Pentapeptide_4	0.72
PF13683	rve_3	0.72
PF00691	OmpA	0.72
PF07589	PEP-CTERM	0.72
PF01764	Lipase_3	0.72
PF01135	PCMT	0.72
PF01565	FAD_binding_4	0.72
PF04896	AmoC	0.72
PF01522	Polysacc_deac_1	0.72
PF03781	FGE-sulfatase	0.72
PF13801	Metal_resist	0.72
PF02358	Trehalose_PPase	0.72
PF00550	PP-binding	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	40.29
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	13.67
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.44
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.44
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.44
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.72
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.72
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	0.72
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.72
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.72
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.72
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.72
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.72
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.72
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.72
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.72

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.03 %
Unclassified	root	N/A	35.97 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.03 %
Unclassified	root	N/A	35.97 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.03 %
Unclassified	root	N/A	35.97 %

Name	Rank	Taxonomy	Distribution
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	43.88 %
Unclassified	root	N/A	35.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.97 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	28.06 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	4.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.97 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	28.06 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	4.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.97 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	25.90 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	4.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.44 %
unclassified Nitrospirales	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → unclassified Nitrospirales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.97 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	23.02 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	4.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.44 %
unclassified Nitrospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae	0.72 %
Nitrospirales bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → unclassified Nitrospirales → Nitrospirales bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.97 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	5.04 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	4.32 %
Nitrospira defluvii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	1.44 %
Nitrospira japonica	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.44 %
Nitrospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	0.72 %
Nitrospirales bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → unclassified Nitrospirales → Nitrospirales bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.97 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	4.32 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	4.32 %
Nitrospira defluvii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	1.44 %
Nitrospira japonica	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.44 %
Nitrospira sp. SCGC AG-212-E16	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. SCGC AG-212-E16	0.72 %
Nitrospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	0.72 %
Nitrospirales bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → unclassified Nitrospirales → Nitrospirales bacterium	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918007\|ConsensusfromContig76075	Not Available	931	Open in IMG/M
3300001139\|JGI10220J13317_10277237	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	909	Open in IMG/M
3300004114\|Ga0062593_100002626	All Organisms → cellular organisms → Bacteria	6634	Open in IMG/M
3300004156\|Ga0062589_102616408	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	524	Open in IMG/M
3300004157\|Ga0062590_102801783	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	521	Open in IMG/M
3300004480\|Ga0062592_101438146	Not Available	658	Open in IMG/M
3300005148\|Ga0066819_1005456	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	794	Open in IMG/M
3300005290\|Ga0065712_10676144	Not Available	556	Open in IMG/M
3300005293\|Ga0065715_10175925	All Organisms → cellular organisms → Bacteria → Proteobacteria	1490	Open in IMG/M
3300005293\|Ga0065715_10969531	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300005293\|Ga0065715_11091210	Not Available	522	Open in IMG/M
3300005295\|Ga0065707_10742192	Not Available	622	Open in IMG/M
3300005328\|Ga0070676_11175735	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	582	Open in IMG/M
3300005330\|Ga0070690_100035222	All Organisms → cellular organisms → Bacteria	3140	Open in IMG/M
3300005406\|Ga0070703_10352211	Not Available	629	Open in IMG/M
3300005457\|Ga0070662_100931504	Not Available	742	Open in IMG/M
3300005468\|Ga0070707_100546385	All Organisms → cellular organisms → Bacteria	1121	Open in IMG/M
3300005518\|Ga0070699_100265159	All Organisms → cellular organisms → Bacteria	1537	Open in IMG/M
3300005526\|Ga0073909_10019837	All Organisms → cellular organisms → Bacteria → Nitrospirae	2175	Open in IMG/M
3300005545\|Ga0070695_100117686	All Organisms → cellular organisms → Bacteria → Nitrospirae	1813	Open in IMG/M
3300005546\|Ga0070696_100676956	Not Available	839	Open in IMG/M
3300005549\|Ga0070704_100311987	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1314	Open in IMG/M
3300005549\|Ga0070704_100723143	Not Available	885	Open in IMG/M
3300005549\|Ga0070704_101732243	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300005617\|Ga0068859_100577017	Not Available	1218	Open in IMG/M
3300005829\|Ga0074479_10617914	All Organisms → cellular organisms → Bacteria	7206	Open in IMG/M
3300005833\|Ga0074472_10243676	All Organisms → cellular organisms → Bacteria → Proteobacteria	1198	Open in IMG/M
3300005833\|Ga0074472_11300119	All Organisms → cellular organisms → Bacteria	2573	Open in IMG/M
3300006050\|Ga0075028_100334443	Not Available	852	Open in IMG/M
3300006102\|Ga0075015_100511935	Not Available	692	Open in IMG/M
3300006163\|Ga0070715_10024845	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	2366	Open in IMG/M
3300006172\|Ga0075018_10056225	All Organisms → cellular organisms → Bacteria → Nitrospirae	1652	Open in IMG/M
3300006237\|Ga0097621_100042548	All Organisms → cellular organisms → Bacteria → Nitrospirae	3659	Open in IMG/M
3300006603\|Ga0074064_11789282	Not Available	500	Open in IMG/M
3300006854\|Ga0075425_100630304	Not Available	1233	Open in IMG/M
3300006854\|Ga0075425_100862624	All Organisms → cellular organisms → Bacteria → Nitrospirae	1036	Open in IMG/M
3300006871\|Ga0075434_100061057	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	3749	Open in IMG/M
3300006880\|Ga0075429_100589378	Not Available	974	Open in IMG/M
3300007521\|Ga0105044_10764537	Not Available	774	Open in IMG/M
3300009053\|Ga0105095_10005861	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	6675	Open in IMG/M
3300009081\|Ga0105098_10220897	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	882	Open in IMG/M
3300009091\|Ga0102851_10568267	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300009098\|Ga0105245_12834146	Not Available	537	Open in IMG/M
3300009111\|Ga0115026_10851599	All Organisms → cellular organisms → Bacteria → Nitrospirae	717	Open in IMG/M
3300009146\|Ga0105091_10063821	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1652	Open in IMG/M
3300009147\|Ga0114129_13513403	Not Available	501	Open in IMG/M
3300009545\|Ga0105237_10689035	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300010373\|Ga0134128_11483736	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300010397\|Ga0134124_10533077	All Organisms → cellular organisms → Bacteria → Nitrospirae	1140	Open in IMG/M
3300010400\|Ga0134122_10008743	All Organisms → cellular organisms → Bacteria	7549	Open in IMG/M
3300010400\|Ga0134122_10188638	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1703	Open in IMG/M
3300010400\|Ga0134122_10367643	Not Available	1259	Open in IMG/M
3300010401\|Ga0134121_10199959	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1728	Open in IMG/M
3300010403\|Ga0134123_10674334	Not Available	1006	Open in IMG/M
3300011410\|Ga0137440_1000859	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	3263	Open in IMG/M
3300011428\|Ga0137456_1009814	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1834	Open in IMG/M
3300011430\|Ga0137423_1140691	Not Available	724	Open in IMG/M
3300011433\|Ga0137443_1020804	All Organisms → cellular organisms → Bacteria → Nitrospirae	1664	Open in IMG/M
3300011436\|Ga0137458_1010389	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	2106	Open in IMG/M
3300011438\|Ga0137451_1173566	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	680	Open in IMG/M
3300011444\|Ga0137463_1001646	All Organisms → cellular organisms → Bacteria	7377	Open in IMG/M
3300012225\|Ga0137434_1008581	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	1128	Open in IMG/M
3300012226\|Ga0137447_1015722	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1103	Open in IMG/M
3300012899\|Ga0157299_10026423	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300012960\|Ga0164301_10695053	Not Available	764	Open in IMG/M
3300012961\|Ga0164302_10852260	Not Available	694	Open in IMG/M
3300012985\|Ga0164308_11956214	Not Available	547	Open in IMG/M
3300012988\|Ga0164306_10134547	Not Available	1664	Open in IMG/M
3300012989\|Ga0164305_12131736	Not Available	514	Open in IMG/M
3300013296\|Ga0157374_10519559	Not Available	1196	Open in IMG/M
3300014326\|Ga0157380_10031609	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	4065	Open in IMG/M
3300014745\|Ga0157377_11101428	Not Available	608	Open in IMG/M
3300014882\|Ga0180069_1083237	Not Available	748	Open in IMG/M
3300015084\|Ga0167654_1009394	All Organisms → cellular organisms → Bacteria	1688	Open in IMG/M
3300015084\|Ga0167654_1045763	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	612	Open in IMG/M
3300015265\|Ga0182005_1245235	Not Available	552	Open in IMG/M
3300015360\|Ga0163144_10009139	All Organisms → cellular organisms → Bacteria	21331	Open in IMG/M
3300015360\|Ga0163144_10128659	All Organisms → cellular organisms → Bacteria	3851	Open in IMG/M
3300018028\|Ga0184608_10118840	All Organisms → cellular organisms → Bacteria → Nitrospirae	1119	Open in IMG/M
3300018031\|Ga0184634_10025761	All Organisms → cellular organisms → Bacteria → Nitrospirae	2281	Open in IMG/M
3300018052\|Ga0184638_1077217	Not Available	1220	Open in IMG/M
3300018053\|Ga0184626_10026868	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	2364	Open in IMG/M
3300018063\|Ga0184637_10050593	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	2535	Open in IMG/M
3300018079\|Ga0184627_10319900	Not Available	813	Open in IMG/M
3300018084\|Ga0184629_10099629	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1420	Open in IMG/M
3300018469\|Ga0190270_10558434	Not Available	1106	Open in IMG/M
3300018476\|Ga0190274_10519337	Not Available	1196	Open in IMG/M
3300019249\|Ga0184648_1119894	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	826	Open in IMG/M
3300019263\|Ga0184647_1470313	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	893	Open in IMG/M
3300019362\|Ga0173479_10620076	Not Available	569	Open in IMG/M
3300019880\|Ga0193712_1105111	Not Available	607	Open in IMG/M
3300020004\|Ga0193755_1138499	Not Available	747	Open in IMG/M
3300020057\|Ga0163151_10000455	All Organisms → cellular organisms → Bacteria	71929	Open in IMG/M
3300020057\|Ga0163151_10003307	All Organisms → cellular organisms → Bacteria	23376	Open in IMG/M
3300020059\|Ga0193745_1002458	All Organisms → cellular organisms → Bacteria → Nitrospirae	3833	Open in IMG/M
3300020059\|Ga0193745_1002471	All Organisms → cellular organisms → Bacteria	3827	Open in IMG/M
3300021073\|Ga0210378_10080071	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1279	Open in IMG/M
3300021081\|Ga0210379_10081806	All Organisms → cellular organisms → Bacteria → Nitrospirae	1327	Open in IMG/M
3300021088\|Ga0210404_10025180	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	2609	Open in IMG/M
3300025903\|Ga0207680_10267907	All Organisms → cellular organisms → Bacteria	1184	Open in IMG/M
3300025912\|Ga0207707_10604351	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300025918\|Ga0207662_10000355	All Organisms → cellular organisms → Bacteria	20699	Open in IMG/M
3300025918\|Ga0207662_10165919	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1414	Open in IMG/M
3300025922\|Ga0207646_10008459	All Organisms → cellular organisms → Bacteria → Nitrospirae	10309	Open in IMG/M
3300025922\|Ga0207646_10186912	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → unclassified Nitrospirales → Nitrospirales bacterium	1871	Open in IMG/M
3300025927\|Ga0207687_10788813	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300025942\|Ga0207689_10557476	Not Available	963	Open in IMG/M
3300026075\|Ga0207708_10255475	All Organisms → cellular organisms → Bacteria → Nitrospirae	1413	Open in IMG/M
3300026121\|Ga0207683_11553574	Not Available	611	Open in IMG/M
3300027526\|Ga0209968_1001985	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	3112	Open in IMG/M
3300027731\|Ga0209592_1051414	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1542	Open in IMG/M
3300027821\|Ga0209811_10015228	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	2483	Open in IMG/M
3300027840\|Ga0209683_10325572	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	707	Open in IMG/M
3300027909\|Ga0209382_11325559	Not Available	728	Open in IMG/M
3300027915\|Ga0209069_10552181	Not Available	657	Open in IMG/M
3300028380\|Ga0268265_12137317	Not Available	567	Open in IMG/M
3300031455\|Ga0307505_10376699	Not Available	673	Open in IMG/M
3300031720\|Ga0307469_10002353	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	7573	Open in IMG/M
3300031740\|Ga0307468_100011751	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	3469	Open in IMG/M
3300031740\|Ga0307468_100256130	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1235	Open in IMG/M
3300031908\|Ga0310900_10055500	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	2351	Open in IMG/M
3300031949\|Ga0214473_10779686	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1033	Open in IMG/M
3300032122\|Ga0310895_10275165	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	787	Open in IMG/M
3300032174\|Ga0307470_11104975	Not Available	638	Open in IMG/M
3300032205\|Ga0307472_100204036	All Organisms → cellular organisms → Bacteria	1506	Open in IMG/M
3300032205\|Ga0307472_100952941	Not Available	799	Open in IMG/M
3300033433\|Ga0326726_10024955	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. SCGC AG-212-E16	5196	Open in IMG/M
3300033433\|Ga0326726_10028819	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	4835	Open in IMG/M
3300033433\|Ga0326726_10781964	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300033485\|Ga0316626_10523927	All Organisms → cellular organisms → Bacteria → Nitrospirae	1012	Open in IMG/M
3300033487\|Ga0316630_10232262	Not Available	1377	Open in IMG/M
3300033487\|Ga0316630_12013808	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	531	Open in IMG/M
3300033812\|Ga0364926_003655	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	2249	Open in IMG/M
3300033813\|Ga0364928_0024725	Not Available	1220	Open in IMG/M
3300033815\|Ga0364946_010406	Not Available	1650	Open in IMG/M
3300034147\|Ga0364925_0186070	Not Available	762	Open in IMG/M
3300034164\|Ga0364940_0002772	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	4032	Open in IMG/M
3300034257\|Ga0370495_0001617	All Organisms → cellular organisms → Bacteria → Nitrospirae	7089	Open in IMG/M
3300034818\|Ga0373950_0083840	Not Available	669	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.58%
Host-Associated	Host-Associated	19.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.80%
Aquatic	Environmental → Aquatic	28.78%
Plants	Host-Associated → Plants	19.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.04%
Sediment	Environmental → Aquatic → Sediment	17.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.23%
Freshwater	Environmental → Aquatic → Freshwater	11.51%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.47%
Floodplain	Environmental → Terrestrial → Floodplain	3.60%
Peat	Environmental → Terrestrial → Peat	2.16%
Roots	Host-Associated → Plants → Roots	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	17.27%
Loam	Environmental → Terrestrial → Soil → Loam	11.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.35%
Sediment	Environmental → Aquatic → Freshwater → Sediment	6.47%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	3.60%
Lake	Environmental → Aquatic → Freshwater → Lake	2.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.16%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.44%
Ice	Environmental → Aquatic → Freshwater → Ice	0.72%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.72%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	17.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.35%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	6.47%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.04%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	3.60%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	2.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.16%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.44%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.44%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	0.72%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.72%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.72%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.07%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.63%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	7.19%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.04%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.04%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.32%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.32%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	3.60%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.88%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.88%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	2.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.88%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	2.16%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.16%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.16%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.44%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.44%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.44%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.44%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.72%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.72%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.72%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.72%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.72%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005148	Soil and rhizosphere microbial communities from Laval, Canada - mgLMA	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007521	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011410	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT222_2	Environmental	Open in IMG/M
3300011428	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2	Environmental	Open in IMG/M
3300011430	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT600_2	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300011436	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012225	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT860_2	Environmental	Open in IMG/M
3300012226	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014882	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231B'_16_10D	Environmental	Open in IMG/M
3300015084	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5a, rocky medial moraine)	Environmental	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300015360	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019880	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020057	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.IB-2	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027526	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027731	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027840	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033812	Sediment microbial communities from East River floodplain, Colorado, United States - 65_j17	Environmental	Open in IMG/M
3300033813	Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17	Environmental	Open in IMG/M
3300033815	Sediment microbial communities from East River floodplain, Colorado, United States - 31_s17	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A_all_C_02521840	2140918007	Soil	MACARCGGFLVNEDWGGLVDNFREKQLRSMRCVRCVNCGSINDSVIRGNRLIERSGICCTTH
JGI10220J13317_102772371	3300001139	Soil	MACARCGGFLVIEEWGDLVDNVRDKQLRRMNCVRCVNCGSIDDSVILENRLIERSALCCT
Ga0062593_1000026267	3300004114	Soil	MACARCGGFLVIEAWDGSVISFREKQLRSMECVRCVNCGSIDDSVILANRRLERTTIGCTTH*
Ga0062589_1026164081	3300004156	Soil	ARCGGFLVIEAWDGSVISFREKQLRSMECVRCVNCGSIDDSVILANRRLERTTIGCTTH*
Ga0062590_1028017832	3300004157	Soil	MGCARCGGFLVIEEWGEIVENVRDKQLRRMNCVRCVNCGSVDDSVILENRLIERSALCCTPH*
Ga0062592_1014381462	3300004480	Soil	MALDESATGGLMACARCGGFLVIEAWDGSVISFREKQLRSMECVRCVNCGSIDDSVILANRRLERTTIGCTTH*
Ga0066819_10054561	3300005148	Soil	MACVRCGGFVVIEEWDGSVSSFREKQLRSMECVRCVNCGSIDDSVILANRLIERSTICCTTH*
Ga0065712_106761442	3300005290	Miscanthus Rhizosphere	MACARCGGFVVIEDWDGSVTSFREKQLRSMECMRCVNCGSIDDSVILANRHIERSTICCTTH*
Ga0065715_101759254	3300005293	Miscanthus Rhizosphere	MACARCDGFLVIEVRGGVVDNIREKRLPQMRCVNCGSIEDSVIHVNRLIERS
Ga0065715_109695311	3300005293	Miscanthus Rhizosphere	DGLLVIEVWGGLVDNIREKDLPKMRCVNCGTIEDSVIHENRLIERSAICCTTH*
Ga0065715_110912102	3300005293	Miscanthus Rhizosphere	MACARCGGFLVIEDWDGSVSSFREKQFRSMECVRCVNCGSIDDSVILANRLIERSTICCTTH*
Ga0065707_107421921	3300005295	Switchgrass Rhizosphere	MACARCGGFLVIEDWDGSVSSFREKQFRSMECVRCVNCGSIDDSVILANRLIERSTICFTTH*
Ga0070676_111757351	3300005328	Miscanthus Rhizosphere	MACARCGGLLVIEVWGGLLDNIREKCLPKMRCVNCGTIEDSVIQENRLIERSAIC
Ga0070690_1000352223	3300005330	Switchgrass Rhizosphere	MACARCDGLLVIEVRGGVVDNIREKRLPQMRCVNCGSIEDSVIHVNRLIERSAICCTTH*
Ga0070703_103522113	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MACARCGGFLILEDWDGSVTSFREKQLRSMECVRCVNCGSIDDSVILANRRIERSTICCTTH*
Ga0070662_1009315043	3300005457	Corn Rhizosphere	MACARCSGLLVIEVWSGLLDNVREKRLPKMRCVNCGSIEDSVIHENRLIVRRSSRVHYVLANCSI*
Ga0070707_1005463851	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MACVRCGGFLVNEGWGGLMENFRERLLRTVRCVNCGSIDDSVILANRLIERGTI
Ga0070699_1002651592	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MACVRCGGFLVNEGWGGLMENFRERLLRTVRCVNCGSIDDSVILANRLIERGTICCTTH*
Ga0073909_100198373	3300005526	Surface Soil	MACVRCGGFLVIEEWDGSVSSFREKQLRSMECVRCVNCGSIDDVVILANRRIERSTICCTTH*
Ga0070695_1001176865	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MACVRCGGFLVIEEWDGSVSSFREKQLRSMECVRCVNCGSIDDAVILANRLIERSTICCTTH*
Ga0070696_1006769561	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MACARCGGFLVIEDWDGSVTSFREKEFRSMECVRCVNCGSIDDSVILANRRIERSTICCTTH*
Ga0070704_1003119871	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MACARCGGFLVIEEWGDLVDNVRDKQLRRMNCVRCVNCGSIDDSVILENRLIE
Ga0070704_1007231431	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MACLRCGGFLVIEEWDGSVSSFREKQLRSMECVRCVNCGSIDDAVILANRRIERSTICCTTH*
Ga0070704_1017322433	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	CGGFVVIEDWDGSVTSFREKELRSMECMRCVNCGSIDDSVILANRCIERSTICCTTH*
Ga0068859_1005770172	3300005617	Switchgrass Rhizosphere	MACARCDGFLVIEVRGGVVDNIREKRLPQMRCVNCGSIEDSVIHVNRLIERSAICCTTH*
Ga0074479_106179143	3300005829	Sediment (Intertidal)	MTCARCGGFLVIEDWDGSVSSFREEQLGSMKHERCVNCGSIDDSVILRNRLIERSTLCCTTH*
Ga0074472_102436762	3300005833	Sediment (Intertidal)	MACVRCGGFQVIEEWGEPVGNVRDKRLWRMKCVRCVNCGSIDDSVILENRRIERSTLCCTTH*
Ga0074472_113001195	3300005833	Sediment (Intertidal)	MACARCGGFLVIENWDGSVSSFREKQIRSMECVRCVNCGSIDDSVIHANRLIERSTLCSTTH*
Ga0075028_1003344433	3300006050	Watersheds	MACARCGGFLVIEEWDGSFSSFREQQLRRMKCVRCVNCGSIDDSVILANRCIERSTICCTTH
Ga0075015_1005119352	3300006102	Watersheds	MACTRCGGFVVIENWDGSVTSFREKQLRSMECVRCVNCGSIDDSVILANRRIERSTICCT
Ga0070715_100248453	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MACARCGGFLVNEGWGGLIENFRDRLLRTMRCVNCGSIDDCVILANRLIERSTICCTMH*
Ga0075018_100562255	3300006172	Watersheds	MACARCGGFLVIEEWDGSFSSFREQQLRRMKCVRCVNCGSIDDSVTLANRRIERSTICCTTH*
Ga0097621_1000425487	3300006237	Miscanthus Rhizosphere	MACARCGGFLVIEDWGGSVSSFREKQFRSMECVRCVNCGSIDDSVILANRLIERSTICCTTH*
Ga0074064_117892822	3300006603	Soil	MACARCGGFLVIEDWDGSVSSFREKQLRSMECVRCVNCGSIDDAVILANRRIERSTICCTTH*
Ga0075425_1006303043	3300006854	Populus Rhizosphere	MACARCGGFVVIQDWDGSVTSFREKELRSMECMRCVNCGSIDDSVILANRCIERSTICCTTH*
Ga0075425_1008626241	3300006854	Populus Rhizosphere	MACARCGGFLVIEDWDGSVSSFREKQLRSMECVRCVNCGSIHDAVTLANRLIERSVVPHLNCGQVA*
Ga0075434_1000610576	3300006871	Populus Rhizosphere	MACARCGGFVVIEDWDGSVTSFREKQLRSMECMRCVNCGSIDDSVILANRRIERSTICCTTH*
Ga0075429_1005893781	3300006880	Populus Rhizosphere	MACARCDGLLVIEVWGGLLDNIREKHLPKMRCVNCGSIEDSVIHENRLIVRRSSRVHYVLANFSL*
Ga0105044_107645371	3300007521	Freshwater	MACTRCGGFLVIEDWDGSVSSFREKQLRSMECVRCVSCGSIEDSMILANRLIERSTIC
Ga0105095_100058618	3300009053	Freshwater Sediment	MACVRCGGFLVVEEWGGLVDNVRDQRLVSMKCVRCVNCGCIDDSVIVENRLIERSEICCTTH*
Ga0105098_102208971	3300009081	Freshwater Sediment	MACARCGGFLVTEDWEGFVDNFREKQLRSRGCVRCVNCGSIEDPVIFENRLIERSTICCTTH*
Ga0102851_105682673	3300009091	Freshwater Wetlands	MACARCGGFLVMEDWDVSVSSFHEKQIRSMEYVRCVNCGAIDDSVMVENRLIERSTPCCTTH*
Ga0105245_128341462	3300009098	Miscanthus Rhizosphere	MACARCGGFLVIEDWNSSITSFREKQLRSMECVRCVNCGSIDDSVILANRRIERSTICCTTH*
Ga0115026_108515992	3300009111	Wetland	MACARCGGFLVMEDWDVSVSSFHEKQIRSMEYVRCVNCGSVDDSVILRNRLIERSTPCCT
Ga0105091_100638212	3300009146	Freshwater Sediment	MACVRCGGFLVPEDWDGLVDNFREKQLRSMGCVRCVNCGSIEDPVIFENRLIERSTICCTTH*
Ga0114129_135134032	3300009147	Populus Rhizosphere	MACARCGGFLVNEDWGGLVDNFRERCLRTMRCVNCGSIDDSVILANRPIERRVICSTTH*
Ga0105237_106890351	3300009545	Corn Rhizosphere	MACARCGGFLVIEDWGGSVSSFREKQLRSMECMRCVNCGSIDDSVILANRHIERSTICCTTH*
Ga0134128_114837361	3300010373	Terrestrial Soil	MACTRCDGLLVIEVRGGVVDNIREKRLPQMRCVNCGSIEDSVIHVNRLIERSAICCTTH*
Ga0134124_105330772	3300010397	Terrestrial Soil	MACARCGGFVVIEDWDGSVTSFREKELRSMECMRCVNCGSIDDSVILANRCIERSTICCTTH*
Ga0134122_100087432	3300010400	Terrestrial Soil	MACARCGGFLVIEEWDGSFSSFREKQLRRMECTRCVNCGSLDDSVILANRRIERRTICCTTH*
Ga0134122_101886383	3300010400	Terrestrial Soil	MACARCGGFLILEDWDGSVTSFREKQLRSMECVRCVNCGSIDDSVIRANRRIERSTICCTTH*
Ga0134122_103676431	3300010400	Terrestrial Soil	MACARCGGFLVIEDWDGSVTSFREKQLRRMECVRCVNCGSIDDSVILANRRIERSTTCCIMH*
Ga0134121_101999592	3300010401	Terrestrial Soil	MACVRCGGFVVIEEWDGSVSSFREKQLRSMECVRCVNCGSIDDSVILANRRIERSTICCTTH*
Ga0134123_106743343	3300010403	Terrestrial Soil	MACARCGGFVVIEDWDGSVTSFREKEFRSMECVRCVNCGSIDDSVILANRRIERSTICCTTH*
Ga0137440_10008595	3300011410	Soil	MACARCGGYLVPEDWDGLVDNFREKQLRSMGCVRCVNCGSIEDPVIFENRLIERSTICCTTH*
Ga0137456_10098142	3300011428	Soil	MACARCGGFLVPEDWDGLVDNFREKQLRSMGCVRCVNCGSIEDPVIFENRLIERSTICCTTH*
Ga0137423_11406913	3300011430	Soil	MACARCGGFLVIEGWGGLIENIRERLLRTMRCVNCGSIDDSVILANRLIERRTICCTTH*
Ga0137443_10208042	3300011433	Soil	MACARCGGYLVPEDWDGLVDNFREKQLRSMGCVRCVNCGSIENPVIFENHLIER
Ga0137458_10103891	3300011436	Soil	MACARCGGYLVPEDWDGLVDNFREKQLRSMGCVRCVNCGSIENPVIFENRLIERSTICCTTH*
Ga0137451_11735663	3300011438	Soil	MACARCGGYLVPEDWDGLVDNFREKQLRSMGCVRCVNCGSIEDPVIFENRLIERSTICCTMH*
Ga0137463_10016467	3300011444	Soil	MACARCGGFLVSEDWGGLVDNFREKQLRGMGCVRCVNCGSIDDSVILGNRLIERSGLCCTTH*
Ga0137434_10085811	3300012225	Soil	MACARCGGFLVIEGWGGLIENIRERLLRTMRCVNCGSIDDSVIFENRLIERSMICSTTH*
Ga0137447_10157222	3300012226	Soil	MACARCGGYLVPEDWDGLVDNFREKLLRSMGCVRCVNCGSIEDPVIFENRLIERSTICCTTH*
Ga0157299_100264231	3300012899	Soil	MACARCSGLLVIEVWSGLLDNVREKRLPKMRCVNCGSIEDSVILENRLIERSAICCTMH*
Ga0164301_106950532	3300012960	Soil	MACARCGGFLVIEEWGGTVTSLREKQLRSMECVRCVNCGSIDDSVILANRLIERSTICCTTH*
Ga0164302_108522603	3300012961	Soil	MACARCGGFLILENWDASFSSFREKQLRRMECVRCVNCGSIDDSVILANRRIERSTICCTTH*
Ga0164308_119562141	3300012985	Soil	MACARCGGFLILENWDGSFSSIREKQLRRMECVRCVNCGSIDDSVILANRRIERSTICCTTH*
Ga0164306_101345472	3300012988	Soil	MACARCDGLLVIEVWGGLLDNIREKRLPKLRCVNCGSIEDSVIHENRLIERRAIRCTTH*
Ga0164305_121317362	3300012989	Soil	MACARCGGFVVIEHWDSSVTSFREKQLRSMECVRCVNCGSIDDSVILANRLIERSTICCTTH*
Ga0157374_105195591	3300013296	Miscanthus Rhizosphere	MACARCDGLLVIEVWGGLLDNIREKRLPKLRCANCGSIEDSVIHENRLIERRAIRCTTH*
Ga0157380_100316093	3300014326	Switchgrass Rhizosphere	MACARCGGFLVIEEWDGSVSSFREKQLRSMECVRCVNCGSIDDSVILANRLIERSTICCITH*
Ga0157377_111014281	3300014745	Miscanthus Rhizosphere	MACARCDGLLVIEVWGVLLDNIREKRLPKLRCVNCGSIEDSVIHENRLIVRRSSRVHYVLANFSI*
Ga0180069_10832373	3300014882	Soil	MACARCGGYLVPEDWDGLVDNFREKQLRSMGCVRCVNCGSIDDSVIFENRLIERSTICCTTH*
Ga0167654_10093943	3300015084	Glacier Forefield Soil	MACARCGGFLVIEDWDGSVSSFREKQLRSMERVRCVNCGSIDDAVILANRRIERSTICCTTH*
Ga0167654_10457632	3300015084	Glacier Forefield Soil	MACARCGGFLVIEEWGELVDNVRDKHLRRVKCVRCVNCGSIYDSVILENRLIERSALCCTPH*
Ga0182005_12452351	3300015265	Rhizosphere	MACARCGGLLVIELWGGLVDNVREKLLPKRRCVNCGSIEDSVIHENRLIERSAICCTTH*
Ga0163144_100091396	3300015360	Freshwater Microbial Mat	MACTRCGGFLVIEDWDGSVSSFREKQLRSMECVRCVSCGSIEDSMILANRLIERSTICCTTH*
Ga0163144_101286596	3300015360	Freshwater Microbial Mat	MACTRCGGFLVIEDWDCLVDNVREKRLRRMRCVNCGCIDDSIIIENRLIERSSTCFTTH*
Ga0184608_101188402	3300018028	Groundwater Sediment	MACARCGGFLVNEDWGGLVDNFRERLLQTMRCVNCGSIDDPVIFENRLIERSTICCTTH
Ga0184634_100257611	3300018031	Groundwater Sediment	MACARCGGFLVIEDWGGLVDNFREKQLRSMGCVRCVNCGSIDDPVIFENRLIERRSICCTTH
Ga0184638_10772172	3300018052	Groundwater Sediment	MACARCGGFLVNEGWGGLIENFRDRLLQTMRCVNCGSIDDPVIFENRLIERSTICCTTH
Ga0184626_100268685	3300018053	Groundwater Sediment	MACARCGGFLVTEDGVSLVDNVCEKRLRRMRCVNCGSIDDSVILGNRLIERSAICCTTH
Ga0184637_100505933	3300018063	Groundwater Sediment	MACARCGGFLVIEDWDGPVDNFREKQLRSMECVRCVNCGSIDDPVIFENRLIERSTICCTTH
Ga0184627_103199002	3300018079	Groundwater Sediment	MACARCGGFLVIEDWGGLVDNFREKRLRRMRCVNCGSIDDSVILGNRLI
Ga0184629_100996292	3300018084	Groundwater Sediment	MACARCGGFLVPEDWDGLVDNFREKQLRSMGCVRCVNCGSIENPVIFENRLIERSTICCTTH
Ga0190270_105584342	3300018469	Soil	MACARCGGFLVIEEWDGSVSSFREKQLRSMECVRCVNCGSIDDSVILANRLIERSTICCITH
Ga0190274_105193372	3300018476	Soil	MACARCGGFLVTEEWDGSVSSFREKQIRSMECVRCVNCGSIDDSVILGNRLIERSTICCTTH
Ga0184648_11198941	3300019249	Groundwater Sediment	MACARCGGYLVPEDWDGLVDNFREKQLRSMGCVRCVNCGSIEDPVIFENRLIERSTICCTMH
Ga0184647_14703131	3300019263	Groundwater Sediment	MACARCGGFLVIEDWGGSVSSFREKQFRSMECVRCVNCGSIDDSVILANRLIERSTICCTTH
Ga0173479_106200763	3300019362	Soil	MVCARCDGLLVIEVWGGLLDNIREKRLPKMRCVNCGSIEDSVILENRLIERSAICSTMH
Ga0193712_11051111	3300019880	Soil	MACARCGGFLVSEDWGGLVDNFREKQLRGMGCVRCVNCGSIDDSVILENRLIERRTLCCTTH
Ga0193755_11384991	3300020004	Soil	MACARCGGFLVNEGWGGLIENIRERLLRTMRCVNCGSIDDPVIFANRLIERSTICCTTH
Ga0163151_1000045513	3300020057	Freshwater Microbial Mat	MACTRCGGFLVIEDWDCLVDNVREKRLRRMRCVNCGCVDDSIIIENRLIERSSTCFTTH
Ga0163151_100033074	3300020057	Freshwater Microbial Mat	MACTRCGGFLVIEDWDCLVDNVREKRLRRMRCVNCGCIDDSIIIENRLIERSSTCFTTH
Ga0193745_10024587	3300020059	Soil	MACARCGGFLVNEDWGGLVDNFRERLLQTMRCVNCGSIDDPVIFENRLI
Ga0193745_10024717	3300020059	Soil	MACARCGGFLVNEEWGEPVNNVRDKRLQRMKCIRCVNCGSIDDSVILENRLIERSTLCCTTH
Ga0210378_100800712	3300021073	Groundwater Sediment	MACARCGGFLVNEGWGGLIENFRDRLLQTMRCVNCGSIDDPVIFENRLIERSTICCTMH
Ga0210379_100818063	3300021081	Groundwater Sediment	MACARCGGFLVPEDWDGLVDNFREKQLRSMGCARCVNCGSIEDPVIFENRLIERSTICCTTH
Ga0210404_100251802	3300021088	Soil	MACARCGGFLVNEGWGGLIDNFREKQLRSMECVRCVNCGSIDDCVILANRLIERGTICCITH
Ga0207680_102679071	3300025903	Switchgrass Rhizosphere	MACARCDGLLVIEVRGGVVDNIREKRLPQMRCVNCGSIEDSVIHVNRLIERSAICCTTH
Ga0207707_106043511	3300025912	Corn Rhizosphere	MECARCGGFLVIEGWGIVVDDIRERLLRTERCVNCGAIGDPVIYKNRPIERSASCCTTH
Ga0207662_1000035512	3300025918	Switchgrass Rhizosphere	MACARCDGFLVIEVRGGVVDNIREKRLPQMRCVNCGSIEDSVIHVNRLIERSAICCTTH
Ga0207662_101659192	3300025918	Switchgrass Rhizosphere	MACARCGGFVVIEDWDGSVTSFREKQLRSMECMRCVNCGSIDDSVILANRHIERSTICCTTH
Ga0207646_1000845920	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MACARCGGFLVNEGWGGLIENFRDRLLRTMRCVNCGSIDDCVILANRLIERSTICCTMH
Ga0207646_101869122	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MACARCGGFVVIEDWDGSVTSFREKELRSMECMRCVNCGSIDDSVILANRCIERSTICCTTH
Ga0207687_107888131	3300025927	Miscanthus Rhizosphere	MACARCGGFLVIEDWNSSITSFREKQLRSMECVRCVNCGSIDDSVILANRRIERSTICCTTH
Ga0207689_105574761	3300025942	Miscanthus Rhizosphere	MACARCGGFVVIEDWDGSVTSFREKQLRSMECVRCVNCGSIDDSVILANRHIERSTICCTTH
Ga0207708_102554751	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MACARCGGFLVIEDWGGSVSSFREKQFRSMECVRCVNCGSIDDSVILANRRIERSTICCTTH
Ga0207683_115535741	3300026121	Miscanthus Rhizosphere	MACARCSGLLVIEVWGAPRQVREKRLPKMRCVNCGSIEDSVIHENRLIERRAIRCTTH
Ga0209968_10019853	3300027526	Arabidopsis Thaliana Rhizosphere	MGCARCGGFLVIEEWGEIVENVRDKQLRRMNCVRCVNCGSVDDSVILENRLIERSALCCTPH
Ga0209592_10514141	3300027731	Freshwater Sediment	MACVRCGGFLVVEEWGGLVDNVRDQRLVSMKCVRCVNCGCIDDSVIVENRLIERSEICCTTH
Ga0209811_100152284	3300027821	Surface Soil	MACVRCGGFLVIEEWDGSVSSFREKQLRSMECVRCVNCGSIDDVVILANRRIERSTICCTTH
Ga0209683_103255722	3300027840	Wetland Sediment	MACVRCGGFLVVEEWGGLVDNVRDRRLTSMKCVRCVNCGCIDDSVIVENRLIERSEICCTTR
Ga0209382_113255592	3300027909	Populus Rhizosphere	MACARCGGFLVIEEWDGFVGSFREKQLQSMECVRCVNCGSIDDSVILANRLIERSTICCTTH
Ga0209069_105521811	3300027915	Watersheds	MACARCGGFVVIEDRDGSVTSFREKQLGSMECVRCVNCGSIDDSVILANRCIERSTICCTTH
Ga0268265_121373172	3300028380	Switchgrass Rhizosphere	MACARCGGFLVIEEWDGSVSSFREKQLRSMECVRCVNCGSIDDSVILANRLIERSTICCTTH
Ga0307505_103766992	3300031455	Soil	MACARCGGFLVIEDWDGSVSSFREKQLRSMECVRCVNCGSIDDSVILANRLIERSTTCCTTH
Ga0307469_100023532	3300031720	Hardwood Forest Soil	MACVRCGGFLVIEEWDGSVSSFREKQLRSMECVRCVNCGSIDDAVILANRLIERSTICCTTH
Ga0307468_1000117515	3300031740	Hardwood Forest Soil	MACVRCGGFLVIEEWDGSVSSFREKQLRSMECVRCVNCGSIDDAVILANRHIERSTICCTTH
Ga0307468_1002561302	3300031740	Hardwood Forest Soil	MACARCGGFLVIEDWDGSVTSFREKQLRRMECVRCVNCGSIDDSVILANRRIERSTICCIMH
Ga0310900_100555004	3300031908	Soil	MACARCGGFLVIEEWGEFVDNVRNKQLLRMKCVRCVNCGSIDDSVILANRLIERSTICCTTH
Ga0214473_107796862	3300031949	Soil	MACARCGGFLVTEDWGGLVDNFREKQLRSMGCVRCVNCGSIDDSVTFENRLIERST
Ga0310895_102751652	3300032122	Soil	MACARCGGFLVIEEWGEFVDNVRNKQLLRMKCVRCVNCGSIDDSVILENRLIERSALCCTTH
Ga0307470_111049751	3300032174	Hardwood Forest Soil	MACARCGGFLILENWDASFSSFREKQLRRMECVRCVNCGSIDDSVILANRRIERSTICCIMH
Ga0307472_1002040361	3300032205	Hardwood Forest Soil	MACARCGGFLILENWDGSFSSFREKQLRRMECVRCVNCGSIDDSVILANRLIERSTICCTTH
Ga0307472_1009529411	3300032205	Hardwood Forest Soil	MACVRCGGFLVIEEWDGSVSSFREKQLRSMECVRCVNCGSIDDAVILANRLIERSTIFCT
Ga0326726_100249559	3300033433	Peat Soil	MACARCGGFLVIEDWDGSVSSFREKQLRSMECVRCVNCGSIDDAVILANRRIERSTICCTTH
Ga0326726_100288195	3300033433	Peat Soil	MACARCGGFLVIEEWDGSVSSFREKQIRSMECVRCVNCGSIDDSVILGNRLIERSTLCCTTH
Ga0326726_107819643	3300033433	Peat Soil	MACARCNGFQVIEGWEGLIDDLREKRLQSMRCVNCGCIDDPVIFENRLIERSATCCTTR
Ga0316626_105239272	3300033485	Soil	MACARCGGFLVMEDWDVSVSSFREKQIRSMEYVRCVNCGSIDDSVILINRLIERSTLCCTTH
Ga0316630_102322622	3300033487	Soil	MACARCGGFLVMEDWDVSVSSFHEKQIRSMEYVRCVNCGAIDDSVMVENRLIERSTPCCTTH
Ga0316630_120138082	3300033487	Soil	MACARCGGFLANEASGGFVDNVREMDLRNIRCVNCGCIDDSMIFGNRLIERSSICCTTH
Ga0364926_003655_2078_2248	3300033812	Sediment	MECARCGWYLVIEGWGGLIENIRERLLRTMRCVNCGSIDDSVILGNRLIQRRSICCT
Ga0364928_0024725_50_229	3300033813	Sediment	MECARCGGYLVIEGWGGLIENIRERLLRTMRCVNCGSIDDSVILGNRLIERRSICCTTH
Ga0364946_010406_700_879	3300033815	Sediment	MECARCGGYLVIEGWGGLIENIRERLLRTMRCVNCGSIDDSVILGNRLNERSAICCTTH
Ga0364925_0186070_1_171	3300034147	Sediment	MACARCGGFLVTEDWVSLVDNVCEKRLRRMRCVNCGSIDDSVILGNRLIERSAICCT
Ga0364940_0002772_689_868	3300034164	Sediment	MECARCGWYLVIEGWGGLIENIRERLLRTMRCVNCGSIDDSVILGNRLIERRSICCTTH
Ga0370495_0001617_1567_1755	3300034257	Untreated Peat Soil	MACARCGGFLVIEEWGVLVGSFRQNQLRSLECVRCVNCGSIDDPVIFENRQIERSTICCTTH
Ga0373950_0083840_342_530	3300034818	Rhizosphere Soil	MACARCGGFVVIEDWDGSVTSFREKQLRSMECVRCVNCGSIDDSVIRANRCIERSTICCTTH

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055253

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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