Metagenome / Metatranscriptome Family F055238

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055238
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	45 residues
Representative Sequence	IASHGADYAMPNLLNHLAAPSCSRLGSNWDRCGVHYVEPIEGAR
Number of Associated Samples	96
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.76 %
% of genes near scaffold ends (potentially truncated)	84.17 %
% of genes from short scaffolds (< 2000 bps)	87.77 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.957 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.216 % of family members)
Environment Ontology (ENVO)	Unclassified (48.921 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.237 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.11% β-sheet: 5.56% Coil/Unstructured: 83.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF04392	ABC_sub_bind	5.04
PF03401	TctC	2.88
PF13676	TIR_2	2.88
PF07813	LTXXQ	2.16
PF13365	Trypsin_2	2.16
PF13424	TPR_12	1.44
PF13649	Methyltransf_25	1.44
PF08734	GYD	1.44
PF01068	DNA_ligase_A_M	1.44
PF14023	DUF4239	0.72
PF02357	NusG	0.72
PF01699	Na_Ca_ex	0.72
PF01548	DEDD_Tnp_IS110	0.72
PF01139	RtcB	0.72
PF00857	Isochorismatase	0.72
PF05063	MT-A70	0.72
PF00346	Complex1_49kDa	0.72
PF01545	Cation_efflux	0.72
PF01841	Transglut_core	0.72
PF13156	Mrr_cat_2	0.72
PF00589	Phage_integrase	0.72
PF01936	NYN	0.72
PF00805	Pentapeptide	0.72
PF01593	Amino_oxidase	0.72
PF08545	ACP_syn_III	0.72
PF03050	DDE_Tnp_IS66	0.72
PF04542	Sigma70_r2	0.72
PF08281	Sigma70_r4_2	0.72
PF14234	DUF4336	0.72
PF00072	Response_reg	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	8.63
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	5.04
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.88
COG4725	N6-adenosine-specific RNA methylase IME4	Translation, ribosomal structure and biogenesis [J]	1.44
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	1.44
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.44
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.44
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.72
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.72
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.72
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.72
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.72
COG3261	Ni,Fe-hydrogenase III large subunit	Energy production and conversion [C]	0.72
COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	Translation, ribosomal structure and biogenesis [J]	0.72
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.72
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.72
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	0.72
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.72
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.72
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.72
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.72
COG0649	NADH:ubiquinone oxidoreductase 49 kD subunit (chain D)	Energy production and conversion [C]	0.72
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.72
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.72
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.72
COG0250	Transcription termination/antitermination protein NusG	Transcription [K]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.96 %
Unclassified	root	N/A	46.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.96 %
Unclassified	root	N/A	46.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.96 %
Unclassified	root	N/A	46.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.88 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.06 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.16 %
Holophagae	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae	0.72 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.72 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.04 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.51 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.35 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.16 %
Acanthopleuribacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Acanthopleuribacterales	0.72 %
Leptospirales	order	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales	0.72 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.72 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.79 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.16 %
Acanthopleuribacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Acanthopleuribacterales → Acanthopleuribacteraceae	0.72 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.72 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.72 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.72 %
Leptospiraceae	family	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.79 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.16 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.72 %
Sulfidibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Acanthopleuribacterales → Acanthopleuribacteraceae → Sulfidibacter	0.72 %
Turneriella	genus	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Turneriella	0.72 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.72 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.79 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.16 %
unclassified Burkholderia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia	0.72 %
Sulfidibacter corallicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Acanthopleuribacterales → Acanthopleuribacteraceae → Sulfidibacter → Sulfidibacter corallicola	0.72 %
Turneriella parva	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Turneriella → Turneriella parva	0.72 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.72 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.72 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.16 %
Bradyrhizobium sp. AT1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AT1	1.44 %
Bradyrhizobium sp. BRP22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BRP22	0.72 %
Burkholderia sp. Ch1-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. Ch1-1	0.72 %
Sulfidibacter corallicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Acanthopleuribacterales → Acanthopleuribacteraceae → Sulfidibacter → Sulfidibacter corallicola	0.72 %
Turneriella parva	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Turneriella → Turneriella parva	0.72 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.72 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.72 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573003\|GZIR7W401A77RH	Not Available	502	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10100059	Not Available	612	Open in IMG/M
3300004479\|Ga0062595_100855067	Not Available	759	Open in IMG/M
3300005332\|Ga0066388_101243992	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300005332\|Ga0066388_105201108	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300005332\|Ga0066388_107680916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	540	Open in IMG/M
3300005363\|Ga0008090_15836722	Not Available	720	Open in IMG/M
3300005434\|Ga0070709_10518511	Not Available	908	Open in IMG/M
3300005437\|Ga0070710_10353361	All Organisms → cellular organisms → Bacteria → Proteobacteria	973	Open in IMG/M
3300005713\|Ga0066905_102100459	Not Available	525	Open in IMG/M
3300005764\|Ga0066903_100235158	Not Available	2801	Open in IMG/M
3300005764\|Ga0066903_100540041	All Organisms → cellular organisms → Bacteria	1994	Open in IMG/M
3300005764\|Ga0066903_101798827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1170	Open in IMG/M
3300005764\|Ga0066903_102182958	Not Available	1067	Open in IMG/M
3300005764\|Ga0066903_103027910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	910	Open in IMG/M
3300005764\|Ga0066903_103379771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	861	Open in IMG/M
3300005764\|Ga0066903_104160203	Not Available	775	Open in IMG/M
3300005764\|Ga0066903_104514413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	742	Open in IMG/M
3300005764\|Ga0066903_104535356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	741	Open in IMG/M
3300006028\|Ga0070717_10039926	Not Available	3820	Open in IMG/M
3300006028\|Ga0070717_11541678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	603	Open in IMG/M
3300006163\|Ga0070715_10384418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	776	Open in IMG/M
3300006173\|Ga0070716_100205338	All Organisms → cellular organisms → Bacteria → Proteobacteria	1313	Open in IMG/M
3300006854\|Ga0075425_101317518	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300006904\|Ga0075424_101230997	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	797	Open in IMG/M
3300009094\|Ga0111539_12349725	Not Available	618	Open in IMG/M
3300009147\|Ga0114129_12171990	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300009147\|Ga0114129_12232689	Not Available	658	Open in IMG/M
3300009792\|Ga0126374_10214095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1230	Open in IMG/M
3300010046\|Ga0126384_11846174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	575	Open in IMG/M
3300010047\|Ga0126382_10695141	Not Available	852	Open in IMG/M
3300010358\|Ga0126370_11307955	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300010358\|Ga0126370_12527045	Not Available	512	Open in IMG/M
3300010359\|Ga0126376_11177471	Not Available	780	Open in IMG/M
3300010360\|Ga0126372_10987519	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300010361\|Ga0126378_10304721	Not Available	1697	Open in IMG/M
3300010361\|Ga0126378_12137892	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300010361\|Ga0126378_13442003	Not Available	502	Open in IMG/M
3300010362\|Ga0126377_12902528	Not Available	553	Open in IMG/M
3300010376\|Ga0126381_101314173	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300010376\|Ga0126381_102786314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	698	Open in IMG/M
3300010376\|Ga0126381_102845556	Not Available	690	Open in IMG/M
3300010376\|Ga0126381_104083684	Not Available	567	Open in IMG/M
3300010396\|Ga0134126_11325370	Not Available	797	Open in IMG/M
3300010398\|Ga0126383_11321782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	811	Open in IMG/M
3300012203\|Ga0137399_11720915	Not Available	515	Open in IMG/M
3300012582\|Ga0137358_10807545	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300012948\|Ga0126375_11442024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BRP22	585	Open in IMG/M
3300012971\|Ga0126369_12981488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AT1	554	Open in IMG/M
3300012986\|Ga0164304_10534161	All Organisms → cellular organisms → Bacteria → Proteobacteria	863	Open in IMG/M
3300012987\|Ga0164307_10191034	All Organisms → cellular organisms → Bacteria → Proteobacteria	1386	Open in IMG/M
3300012988\|Ga0164306_11051680	Not Available	674	Open in IMG/M
3300013297\|Ga0157378_12823460	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300015371\|Ga0132258_10153094	All Organisms → cellular organisms → Bacteria → Proteobacteria	5534	Open in IMG/M
3300015372\|Ga0132256_101835118	Not Available	714	Open in IMG/M
3300015373\|Ga0132257_100885085	Not Available	1118	Open in IMG/M
3300016294\|Ga0182041_12174186	Not Available	518	Open in IMG/M
3300016319\|Ga0182033_11645676	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300016341\|Ga0182035_11248966	Not Available	664	Open in IMG/M
3300016357\|Ga0182032_11472162	Not Available	591	Open in IMG/M
3300016357\|Ga0182032_12001550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M
3300016371\|Ga0182034_12086084	Not Available	500	Open in IMG/M
3300016387\|Ga0182040_10287362	All Organisms → cellular organisms → Bacteria	1252	Open in IMG/M
3300016387\|Ga0182040_11925892	Not Available	507	Open in IMG/M
3300016422\|Ga0182039_10014360	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Turneriella → Turneriella parva	4704	Open in IMG/M
3300016422\|Ga0182039_10023293	All Organisms → cellular organisms → Bacteria → Proteobacteria	3860	Open in IMG/M
3300016422\|Ga0182039_11075152	Not Available	724	Open in IMG/M
3300021510\|Ga0222621_1023778	Not Available	1242	Open in IMG/M
3300021560\|Ga0126371_10774209	Not Available	1106	Open in IMG/M
3300021560\|Ga0126371_11724754	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300021560\|Ga0126371_12338297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300021560\|Ga0126371_13190355	Not Available	554	Open in IMG/M
3300021560\|Ga0126371_13799369	Not Available	509	Open in IMG/M
3300025916\|Ga0207663_10915377	Not Available	702	Open in IMG/M
3300025929\|Ga0207664_10219649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1647	Open in IMG/M
3300025929\|Ga0207664_10325294	Not Available	1357	Open in IMG/M
3300028771\|Ga0307320_10151275	Not Available	898	Open in IMG/M
3300028881\|Ga0307277_10000169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21484	Open in IMG/M
3300028881\|Ga0307277_10155287	Not Available	993	Open in IMG/M
3300031543\|Ga0318516_10404291	Not Available	787	Open in IMG/M
3300031544\|Ga0318534_10870169	Not Available	505	Open in IMG/M
3300031545\|Ga0318541_10014896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3595	Open in IMG/M
3300031545\|Ga0318541_10144050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1304	Open in IMG/M
3300031546\|Ga0318538_10262517	Not Available	928	Open in IMG/M
3300031546\|Ga0318538_10308179	Not Available	853	Open in IMG/M
3300031573\|Ga0310915_10971321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300031573\|Ga0310915_11131728	Not Available	543	Open in IMG/M
3300031679\|Ga0318561_10063480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1877	Open in IMG/M
3300031713\|Ga0318496_10718856	Not Available	551	Open in IMG/M
3300031719\|Ga0306917_10077391	All Organisms → cellular organisms → Bacteria	2325	Open in IMG/M
3300031719\|Ga0306917_10306035	All Organisms → cellular organisms → Bacteria	1228	Open in IMG/M
3300031719\|Ga0306917_10842692	Not Available	718	Open in IMG/M
3300031724\|Ga0318500_10077263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1475	Open in IMG/M
3300031736\|Ga0318501_10097111	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300031744\|Ga0306918_10704580	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300031763\|Ga0318537_10066940	All Organisms → cellular organisms → Bacteria	1314	Open in IMG/M
3300031763\|Ga0318537_10222522	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300031765\|Ga0318554_10877520	Not Available	501	Open in IMG/M
3300031768\|Ga0318509_10387042	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300031771\|Ga0318546_10356003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1019	Open in IMG/M
3300031777\|Ga0318543_10105920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1212	Open in IMG/M
3300031778\|Ga0318498_10291787	Not Available	732	Open in IMG/M
3300031794\|Ga0318503_10108034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	886	Open in IMG/M
3300031821\|Ga0318567_10270084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	956	Open in IMG/M
3300031835\|Ga0318517_10367950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	650	Open in IMG/M
3300031880\|Ga0318544_10037285	All Organisms → cellular organisms → Bacteria	1714	Open in IMG/M
3300031890\|Ga0306925_11430101	Not Available	680	Open in IMG/M
3300031890\|Ga0306925_11668683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	616	Open in IMG/M
3300031897\|Ga0318520_10019288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. Ch1-1	3213	Open in IMG/M
3300031897\|Ga0318520_11022496	Not Available	522	Open in IMG/M
3300031910\|Ga0306923_10674478	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Acanthopleuribacterales → Acanthopleuribacteraceae → Sulfidibacter → Sulfidibacter corallicola	1153	Open in IMG/M
3300031910\|Ga0306923_11376264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	744	Open in IMG/M
3300031912\|Ga0306921_11022241	Not Available	931	Open in IMG/M
3300031912\|Ga0306921_11588489	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300031941\|Ga0310912_10397954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AT1	1072	Open in IMG/M
3300031942\|Ga0310916_11391774	Not Available	575	Open in IMG/M
3300031954\|Ga0306926_10191846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2535	Open in IMG/M
3300031959\|Ga0318530_10297754	Not Available	666	Open in IMG/M
3300032001\|Ga0306922_11648527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	636	Open in IMG/M
3300032035\|Ga0310911_10784865	Not Available	551	Open in IMG/M
3300032052\|Ga0318506_10034689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1959	Open in IMG/M
3300032054\|Ga0318570_10026494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2261	Open in IMG/M
3300032054\|Ga0318570_10382668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	641	Open in IMG/M
3300032059\|Ga0318533_10788781	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300032063\|Ga0318504_10555215	Not Available	551	Open in IMG/M
3300032064\|Ga0318510_10472705	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	540	Open in IMG/M
3300032066\|Ga0318514_10107334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1422	Open in IMG/M
3300032068\|Ga0318553_10387307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	732	Open in IMG/M
3300032076\|Ga0306924_10939633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	954	Open in IMG/M
3300032261\|Ga0306920_103020683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	634	Open in IMG/M
3300033289\|Ga0310914_10432333	Not Available	1191	Open in IMG/M
3300033290\|Ga0318519_10154199	Not Available	1286	Open in IMG/M
3300033290\|Ga0318519_10897667	Not Available	548	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.81%
Host-Associated	Host-Associated	7.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.37%
Plants	Host-Associated → Plants	7.19%
Aquatic	Environmental → Aquatic	1.44%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.76%
Sediment	Environmental → Aquatic → Sediment	1.44%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.44%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.54%
Loam	Environmental → Terrestrial → Soil → Loam	15.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.44%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.72%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	49.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.44%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.72%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.32%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.60%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.44%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.44%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.72%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.72%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573003	Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FE2_04433870	2189573003	Grass Soil	FSRDDLIASHGADYAMPNLLGHLAAPSCSRLGSHLDRCGVHYVEPIEGAR
AF_2010_repII_A001DRAFT_101000592	3300000793	Forest Soil	SREDLIASHGADYSMPNLLNHLAAPGCNRLGSNWDRCGVHYVEPIEGS*
Ga0062595_1008550672	3300004479	Soil	RDELIAAHGADYAMPNLLNHLAAPDCSRVGSQWDRCGVHYVEPIETDSRGE*
Ga0066388_1012439921	3300005332	Tropical Forest Soil	MGSPVAADHPMPNVLDHLAAPNCSRLGSHWDRCGVHYVEP
Ga0066388_1052011082	3300005332	Tropical Forest Soil	AMPNLLSHLAAPSCSRLGSNWDRCGVHYVEPIETDRRGE*
Ga0066388_1076809162	3300005332	Tropical Forest Soil	HGADHPMPNLLDRLAAPDCPRFGSHWDRCGVHYVEPIEGTR*
Ga0008090_158367221	3300005363	Tropical Rainforest Soil	VAFLRDDLIASHGTDYPMPNLLNHLAAPSSKRLGSHWDRCGVHYVEPIEGAR*
Ga0070709_105185111	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	ASHGADYAMPNLLNHLAAPSCSRLGSQWDRCGVHYVEPIESAR*
Ga0070710_103533612	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	GADYAMPNLLNHLAAPDCSRVRSQWDRCGVHYVEPIETDSRGE*
Ga0066905_1021004591	3300005713	Tropical Forest Soil	DYAMPNLLNHLAAPSCSRLGSNWDRCGVHYVEPIAR*
Ga0066903_1002351586	3300005764	Tropical Forest Soil	RAAFSRDDLIAAHGADYAMPNLLSCLAAPSCSRRGSNWDRCGVHYFEPIEGAR*
Ga0066903_1005400415	3300005764	Tropical Forest Soil	LAGGIFARRLIASHGANYAMPNLLNHLAAPSCSRLGAHWDRCGVHYVEPIEGAR*
Ga0066903_1017988272	3300005764	Tropical Forest Soil	LSHAASAIGGPPFRDDLIASHGADYSMPNLLDHLAAPNCSRLGSHWDRCGVHYVEPIEGG
Ga0066903_1021829583	3300005764	Tropical Forest Soil	VAFLRDDLIASHGTDYPMPNLLNHLAASSSKRLGSHWDRCGVHYVEPIEGAR*
Ga0066903_1030279101	3300005764	Tropical Forest Soil	AFSRDDLIATHGADYPMPNLLDRLAAPDCPRLGSHWDRCGIHYVEPIEGG*
Ga0066903_1033797711	3300005764	Tropical Forest Soil	MGSPVAADHPMPNLLNHLAAPNCSRLGSHWDRCGVHYVEPIEGAQ*
Ga0066903_1041602031	3300005764	Tropical Forest Soil	IASHGADYAMPNLLDHLAAPSCSRLGSNWDRCGVHYVAPIETDRRGE*
Ga0066903_1045144131	3300005764	Tropical Forest Soil	DYAMPNLLNHLAAPSCNRLGSHRCGVHYVEPIEGAR*
Ga0066903_1045353561	3300005764	Tropical Forest Soil	GANYPMPNLLNHLAAPSCSRLGSNWDRCGAHYVEPIEG*
Ga0070717_100399263	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	AAFARDELIAAHGADYAMPNLLNHLAAPSCSKLGSHWDRCGVHYVEPIEGGRRRE*
Ga0070717_115416781	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	AMPNLLNHLAAPSCSRLGSHWDRCGMHYVEPIEGAR*
Ga0070715_103844182	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	AHGADYAMPNLLNHLAAPDCSRVGGVHYVEPIETGE*
Ga0070716_1002053382	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	AAFERDELIAAHGADYAMPNLLNHLAAPDCSRVGSQWERCGVHYVEPIETE*
Ga0075425_1013175182	3300006854	Populus Rhizosphere	MIVSHGADYPMPNLLDHLAAPSCSRLGSNWDRCGVHYVKPIEGAL*
Ga0075424_1012309971	3300006904	Populus Rhizosphere	ELIAAHGADCAMPNLLNHLAAPSCNRLGSHWDRCGVHYVEPIEG*
Ga0111539_123497251	3300009094	Populus Rhizosphere	AFERDDLIASHGADQPMPSLLDRLAATGCSRLGSQWDRCGVHYVEPIEGAR*
Ga0114129_121719902	3300009147	Populus Rhizosphere	MPNLLNHLAAPSCSRLGSHWDRCGVHYVAPIEGAR*
Ga0114129_122326891	3300009147	Populus Rhizosphere	MRLESRLPTRDELLATHGAACPMPSLLERLAAPGCPKIGSQWDRCGVHYVDPIEGDL*
Ga0126374_102140953	3300009792	Tropical Forest Soil	AFSRDDLIATHGADHPIPNLLDRLAAPGCPKLGSHWDRCGVHYVEPIEGTR*
Ga0126384_111213541	3300010046	Tropical Forest Soil	LAAHGPACPMPSLLNHLAAPGCPKLGSHWDRCGVYYAEPIEGAR*
Ga0126384_118461741	3300010046	Tropical Forest Soil	DLIASHGADYAMPNLLDRLAAPGCPRLGSTWDRCGVHYVEPIEGG*
Ga0126382_106951412	3300010047	Tropical Forest Soil	AAFSRDDLIASHGADYPMPNLLNHLAAPSCSRLRSHWDRCGVHYVEPIEGAR*
Ga0126370_113079552	3300010358	Tropical Forest Soil	WRAAFLRDDLIASHGAHYAMPNLLNHLAAPGCSRLGSHWDRCGVHYVEPIEGAR*
Ga0126370_125270451	3300010358	Tropical Forest Soil	DDLIASHGEDYAMPNLLNHLAAPGCNRLGSHWDRCGVHYVEPIEGAG*
Ga0126376_111774711	3300010359	Tropical Forest Soil	MPNLLNHLAAPGCNRLGSHWDRCGVHYVEPIEGAG*
Ga0126372_109875191	3300010360	Tropical Forest Soil	DLIASHGANYAMPNLLNRLAAPGCPKRGSHWDRCGVHYVQPIEGG*
Ga0126378_103047211	3300010361	Tropical Forest Soil	GGLHFRDLIAAHGADYAMPNLLNHLAAPDCPRLGSHWDRCGVHYVEPIEGAG*
Ga0126378_121378923	3300010361	Tropical Forest Soil	MVADHPMPNLIDRLAAPDCPRLGSNWDRCGVHYVEPIKGG*
Ga0126378_134420031	3300010361	Tropical Forest Soil	MPNLLDRLAAPDCPRLGSTWDRRGAHYVEPIEGGD*
Ga0126377_129025281	3300010362	Tropical Forest Soil	IASHGLDCPMPNLLDHLAASGCPKLRSMWDRCGVHYVEPIEGAR*
Ga0126381_1013141731	3300010376	Tropical Forest Soil	RDDLIASHGADYAMPNLLNHLAAPGCSRLDSNWDRCGVHYVEPIEGAR*
Ga0126381_1027863141	3300010376	Tropical Forest Soil	IASHGADYAMPNLLDHLAAPSCSRLGPNWDRCGVHYVEPIEGTR*
Ga0126381_1028455563	3300010376	Tropical Forest Soil	AAFLRDDLIASHGADYPMPNLLNHLAAPSCSRLGSHWDRCGVHYVEPIEGG*
Ga0126381_1040836841	3300010376	Tropical Forest Soil	YQRADLLAEHGAACPMPSLLDHLVAPGCVRIGSQWDRCGVRYVEPIETSR*
Ga0134126_113253702	3300010396	Terrestrial Soil	DELIASHGADYAMPNLLNHLAAPGCNRLGSSWDRCGVHYVAPIEGAR*
Ga0126383_113217821	3300010398	Tropical Forest Soil	AFSRDDLIASHGAHYAMPNLLNHLAAPNCSRLGSSWHRCGVHYVEPIEGAR*
Ga0137399_117209152	3300012203	Vadose Zone Soil	TGTHYFMCGDELIASHGADYAMPNLLNHLAAPSCSRRGSNWDRCGVHYVEPIEGAR*
Ga0137358_108075452	3300012582	Vadose Zone Soil	YAMPNLLNHLAAPSCSRLGSHWDRCGVHYVDPIEGAR*
Ga0126375_114420241	3300012948	Tropical Forest Soil	ASHSANYAMPNLLNHLAAPGCSRLGSQWDRCGVHYVEPIEGAR*
Ga0126369_129814881	3300012971	Tropical Forest Soil	LIATHGADHPMPNLLDRLAAPDCQGLGSTWDRCGVHYVEPIETDRRCE*
Ga0164304_105341612	3300012986	Soil	ELIAAHGADYAMPNLLNHRIGSQWDRCGVHYVEPIETE*
Ga0164307_101910343	3300012987	Soil	VASHGADYAMPNLLNHLAAPSCSRLGSQWDRCGVHYVEPIETDSRGE*
Ga0164306_110516801	3300012988	Soil	DLIAAHGADYAMPNLLPQLAAPSCSRLGSHWDRCGVHYVEPIEGAR*
Ga0157378_128234602	3300013297	Miscanthus Rhizosphere	MSNLLNHLAAPGCNRLGSHWDRCGVHYVEPVEGAR*
Ga0157380_130363331	3300014326	Switchgrass Rhizosphere	AFHGADRAMPDLLDQLVAPGCIRLGSNWDRCGAHFVEPIEGPR*
Ga0132258_101530946	3300015371	Arabidopsis Rhizosphere	LAGRLFRDDLIASHGVNYAVPNLLNYLAAPSCSRVGSHWDRCGVHYVEPIEGGR*
Ga0132256_1018351181	3300015372	Arabidopsis Rhizosphere	HGVNYAVPNLLNYLAAPSCSRVGSHWDRCGVHYVEPIEGGR*
Ga0132257_1008850853	3300015373	Arabidopsis Rhizosphere	LAGRLFRDDLIASHGVNYAVPNLLNYLAAPSGSRVGSHWDRCGVHYVEPIEGGR*
Ga0182041_121741861	3300016294	Soil	LIASHGADYAMPNLVNHLAAPNCSRLGSHWDRCGVHYVEPIEGAR
Ga0182033_116456761	3300016319	Soil	WRAAFSRDELIAAHGADYAMPNLLNQLAAPTCSRLGSHWDRCGVHYVEPIEGAR
Ga0182035_112489662	3300016341	Soil	ADYAMPNLLNHLAAPSCSRLGSRWDRCGVHYVEPIKGAR
Ga0182032_114721621	3300016357	Soil	FSRDELIASHGADYAMPNLLNHLAAPSCSRLGSNWDRCGVHYVEPIEGAR
Ga0182032_120015502	3300016357	Soil	MPNLLNHLAAPSCSRLGSHWDRCGVHYVEPIEGTR
Ga0182034_120860841	3300016371	Soil	MPNLLSHLAAPSCSRLGSNWDRCGVHYVEPIEGAR
Ga0182040_102873623	3300016387	Soil	RDDLIASHGADYPMPNLLDQLAAPSCSRLGSHWDRCGVHYVEPIETDRPDE
Ga0182040_119258922	3300016387	Soil	ACDDLIASHGAGYLMPNLLDHLAAPSCSRLGSHWDRCGVHYVEPIEGVR
Ga0182039_100143601	3300016422	Soil	LIASHGADYAMPNLLNHLAAPSCSRLGSNWDRCGVHYVEPIEGAR
Ga0182039_100232935	3300016422	Soil	MPNLLNHLAAPSCSTLGPHWDRCGVHYVEPIEGADSFFE
Ga0182039_110751521	3300016422	Soil	SHGPDYAMPNLFDHLAAPSCSRLGSNWDRSGVHYVEPIEGAR
Ga0184621_103525821	3300018054	Groundwater Sediment	RAMPNLLKDLAAPDSKTDDQWDRCGVHYVEPIEGSSRL
Ga0222621_10237781	3300021510	Groundwater Sediment	AMPDLLNDLAAPGCSNIGSNWDRCGAHFVEPIEGAR
Ga0126371_107742092	3300021560	Tropical Forest Soil	AHGPACPMPSLLNHLAAPGCPKLGSHWDRCGVYYAEPIEGAR
Ga0126371_117247542	3300021560	Tropical Forest Soil	LIASHGADYAMPNLLNHLAAPGCNRLGSHWDRCGVHYVEPIEGAR
Ga0126371_123382971	3300021560	Tropical Forest Soil	IAAHGADYAMPNLLNHLAAPGCSRLGSQWDRCGVRYVEPIEGAR
Ga0126371_131903552	3300021560	Tropical Forest Soil	DLIASHGVDYAMPKLLNHLAAPNCSRLGSHWDRCGVHYVEPIEGAR
Ga0126371_137993691	3300021560	Tropical Forest Soil	IASHGADYAMPNLLNHLAAPSCSRLGSNWDRCGVHYVEPIEGAR
Ga0207663_109153771	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	HGADYAMPNLLNHLAAPDCSRVGSQWERCGVHYVEPIETE
Ga0207664_102196494	3300025929	Agricultural Soil	GADYAMPNLLNHLAAPDCSRVRSQWDRCGVHYVEPIETDSRGE
Ga0207664_103252942	3300025929	Agricultural Soil	YAMPNLLNHLAAPDCPRLGSTWDRCGVHYVEPIEGG
Ga0307320_101512751	3300028771	Soil	DRAMPDLLNDLAAPGCSNIGSNWDRCGAHFVEPIEGAR
Ga0307277_1000016921	3300028881	Soil	MPNLLNHLAAPDCSRVGSQWDRCGVHYVEPIETDFAR
Ga0307277_101552871	3300028881	Soil	RDDLIASHGADQPMPSLLDRLAAPGCSRLGSQWDRCGVHYVEPIEGAG
Ga0318516_104042912	3300031543	Soil	DDLIASHGADHPMPNLLDRLAAPDCSRLGSHWDRCGVHYVEPIEGAR
Ga0318534_108701693	3300031544	Soil	LIASHGADYPMPNLLDQLAAPSCSRLGSHWDRCGVHYVEPIETDRPDE
Ga0318541_100148964	3300031545	Soil	MPNLLNHLAAPSCSRLGPHWDRCGVHYVEPIEGADSFFE
Ga0318541_101440503	3300031545	Soil	ASHGPDCAMPNLLDHLAAPSCSRLGSNWDRCGVHYVEPIEGAL
Ga0318538_102625172	3300031546	Soil	KAAYQRAELLATHGPAYPMPSLLEHLAAPGCPRLGSHWDRCGVHYVEPIEGAR
Ga0318538_103081791	3300031546	Soil	MIAAHGADYAMPNLLNHLAAPSCSRLGSRWDRCGVHYVEPIKGAR
Ga0310915_109713212	3300031573	Soil	HGADHPMPNLLDRLAAPDCSRLGSHWDRCGVHYVEPIEGAR
Ga0310915_111317282	3300031573	Soil	DDLIASQGTDYPMPNLLNHLVAPSSKRLGSHWDRCGVHYVEPIEGAR
Ga0318561_100634801	3300031679	Soil	DYAMPNLLKRLATPSCSRLGSNWDRCGVHYVEPIETDRRGE
Ga0318496_107188562	3300031713	Soil	AHGADYAMPNLLNQLAAPTCSRLGSHWDRCGVHYVEPIEGAR
Ga0306917_100773911	3300031719	Soil	SHGADYPMPNLLNHLAAPSCDRLGSHWDRCGVHYVEPIEGGQ
Ga0306917_103060352	3300031719	Soil	RDELIAAHGADYAMPNLLNQLAAPTCSRLGSHWDRCGVHYVEPIEGAR
Ga0306917_108426921	3300031719	Soil	SRDDLIASHGPDYAMPNLFDHLAAPSCSRLGSNWDRSGVHYVEPIEGAR
Ga0318500_100772633	3300031724	Soil	AMPNLLDHLAAPSCSRLGSNWDRCGVHYVEPIEGAR
Ga0318501_100971114	3300031736	Soil	MPNLLNHLAAPSCSRLGPHWDRCGVHYVEPIEGADSF
Ga0306918_107045802	3300031744	Soil	DDLIATHGADHPMPNLLDRLAAPSCSRLGSNWDRCGVHYVEPIETDRRGE
Ga0318537_100669402	3300031763	Soil	DHPMPNLLDRLAAPDCSRLGSHWDRCGVHYIEPIEGG
Ga0318537_102225222	3300031763	Soil	IASHGADHPMPNLLDRLAAPDCSRLGSHWDRCGVHYVEPIEGAR
Ga0318554_108775202	3300031765	Soil	RDELIASHGANYAMPNLLNHLTAPSCSRLGSNWDRCGVHYVEPIESAQ
Ga0318509_103870421	3300031768	Soil	GADYAMPNLVNHLAAPNCSRLGSHWDRCGVHYVEPIEGAR
Ga0318521_108845493	3300031770	Soil	GADYAMPNLLNHLAAPSCSRLGSQWDRCGVHYVEPIEGG
Ga0318546_103560032	3300031771	Soil	DWRAAFSRDDLIAAHGADYAMPNLLDHLAAPSCSRLGSNWDRCGVHYVEPIEGAR
Ga0318543_101059201	3300031777	Soil	AFARDELIAAHGADYAMPNLLNHLAAPGCSRLGSRWDRCGVHYVEPIEMDRRGE
Ga0318498_102917874	3300031778	Soil	SHGANYPMPNLLGRLAAPGCSRLGSHWDRCGVHYVEPIEGAR
Ga0318503_101080341	3300031794	Soil	AAFSRDDLIASHGAEYPMPNLLNQLAAPTCSRLGSHWDRCGVHYVEPIEGAR
Ga0318567_102700841	3300031821	Soil	DLIATHRADYAMPNLLKRLATPSCSRLGSNWDRCGVHYVEPIETDRRGE
Ga0318517_103679502	3300031835	Soil	DYAMPNLLDHLAAPSCSRLGSNWDRCGVHYVEPIEGAR
Ga0318544_100372853	3300031880	Soil	SRDDLIAAHGADYAMPNLLDHLAAPSCSRLGSNWDRCGVHYVEPIEGAR
Ga0306925_114301012	3300031890	Soil	FTGAAFSRDDLIASHGADYAMPNLLSHLAAPSCSRLGSNWDRCGVHYVEPIEGAR
Ga0306925_116686832	3300031890	Soil	DWRAAFSRDNLIASHGADHPMPNLLDRLAAPDCSRLGSHWDRCGVHYVEPIEGAR
Ga0318520_100192886	3300031897	Soil	NGANYPMPNLLGRLAAPGCSRLGSHWDRCGVHYVEPIEGAR
Ga0318520_110224961	3300031897	Soil	ASHGTGYAMPNLLNHLAAPSCSRLGSNWDRCGVHYVEPIEGAQ
Ga0306923_106744781	3300031910	Soil	ADYPMPNLLDHLAAPSCSRLGSNWDRCGVHYVEPVEGAR
Ga0306923_113762643	3300031910	Soil	DDLIATHGADHPMPNLLDHLAAPSCNRLGSHWDRCGVHYVEPIEGTR
Ga0306921_110222411	3300031912	Soil	AAFSRDELIASHGADYAMPNLLDHLAAPSCSRLGSNWDRCGVHYVEPIEGAQ
Ga0306921_115884891	3300031912	Soil	ASHGADYAMPNLLNHLAAPSCSRLGSNWDRCGVHYVEPIEGAR
Ga0310912_103979541	3300031941	Soil	AFARDELIAAHGADYAMPNLLDRLAAPNCPRLGSTWDRCGVHYVEPIEGVR
Ga0310916_113917741	3300031942	Soil	FARDDLIASHGADYAMPNLLDHLAAPNCSRLGSNWDRCGVHYVEPIEGAR
Ga0306926_101918463	3300031954	Soil	ADYAMPNLLKRLATPSCSRLGSNWDRCGVHYVEPIETDRRGE
Ga0318530_102977542	3300031959	Soil	SHGADYAMPNLLNHLAAPSCSRLGSNWDRCGVHYVEPIEGAH
Ga0306922_116485271	3300032001	Soil	RAAFSRDDLIASHGADHPMPNLLDRLAAPDCSRLGSHWDRCGVHYVEPIEGAR
Ga0310911_107848651	3300032035	Soil	LIASHGTDYAMPNLLNHLAAPSCSRLGSNWDRCGVHYVEPIEGAQ
Ga0318506_100346891	3300032052	Soil	MVLDYSMPNLLGHLAAPSCSRLGSSWDRCGVHYVG
Ga0318570_100264941	3300032054	Soil	NYAMPNLLNHLTAPSCSRLGSNWDRCGVHYVEPIESAQ
Ga0318570_103826683	3300032054	Soil	GPDCAIPNLLDHLAAPSCSRLGSNWDRCGVHYVEPIEGAL
Ga0318533_104784721	3300032059	Soil	DYPMPNLLNLLAAPDCNRLGSHWDRCGVHYVEPIETGSRGE
Ga0318533_107887812	3300032059	Soil	ELIAAHGADYAMPNLLNHLAAPGCSRLGSQWDRCGVHYVEPIRHRTT
Ga0318504_105552151	3300032063	Soil	ASHGTDYAMPNLLNHLAAPSCSRLGSNWDRCGVHYVEPIEGAQ
Ga0318510_104727052	3300032064	Soil	AMPNLVNHLAAPNCSRLGSHWDRCGVHYVEPIEGAR
Ga0318514_101073341	3300032066	Soil	RDELIASHGADYAIPNLLNRLAAPDCPRLGSTWDRCGVHCVEPIRHRTT
Ga0318553_103873071	3300032068	Soil	AYAMPNLLNHLAAPSCSRLGSHWDRCGVHYVEPIEGTR
Ga0306924_109396331	3300032076	Soil	CKLVMIVSHGADYPMPNLLDHLAAPSCSRLGSNWDRCGVHYVEPVEGAR
Ga0306920_1026884901	3300032261	Soil	MPNLLDRLAAPDCSRLGSHWDRCGVRYVEPIEGAR
Ga0306920_1030206831	3300032261	Soil	AAFSRDDLIATHGADYAMPNLLNQLAAPTCSRLGSHWDRCGVHYVEPIEGAW
Ga0310914_104323334	3300033289	Soil	MPNLFDHLAAPSCSRLGSNWDRSGVHYVEPIEGAR
Ga0318519_101541991	3300033290	Soil	ASHGADYPMPNLLNHLAAPSCDRLGSHWDRCGVHYVEPIEGGQ
Ga0318519_108976671	3300033290	Soil	HGADYAMPNLLNHLAAPSCSRLGSRWDRCGVHYVEPIKGAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055238

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences