Metagenome Family F055221

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F055221
Family Type	Metagenome
Number of Sequences	139
Average Sequence Length	40 residues
Representative Sequence	LSVNTDEARRRAEALFKKEQQLREAQQAMAEYQAELH
Number of Associated Samples	105
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.12 %
% of genes near scaffold ends (potentially truncated)	97.12 %
% of genes from short scaffolds (< 2000 bps)	95.68 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.590 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.532 % of family members)
Environment Ontology (ENVO)	Unclassified (51.079 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.799 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.85% β-sheet: 0.00% Coil/Unstructured: 46.15%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF13545	HTH_Crp_2	5.76
PF01925	TauE	3.60
PF00583	Acetyltransf_1	2.16
PF01425	Amidase	2.16
PF03401	TctC	1.44
PF04392	ABC_sub_bind	1.44
PF12244	DUF3606	0.72
PF00924	MS_channel	0.72
PF13493	DUF4118	0.72
PF00701	DHDPS	0.72
PF13202	EF-hand_5	0.72
PF00083	Sugar_tr	0.72
PF04909	Amidohydro_2	0.72
PF10431	ClpB_D2-small	0.72
PF13458	Peripla_BP_6	0.72
PF13505	OMP_b-brl	0.72
PF07992	Pyr_redox_2	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	3.60
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	2.16
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.44
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.44
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.44
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.72
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.59 %
Unclassified	root	N/A	37.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.59 %
Unclassified	root	N/A	37.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.59 %
Unclassified	root	N/A	37.41 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	54.68 %
Unclassified	root	N/A	37.41 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	50.36 %
Unclassified	root	N/A	37.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.41 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	27.34 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.34 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2.16 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.34 %
Methylorubrum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum	2.16 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.34 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	2.16 %
Hyphomicrobium denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans	0.72 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0425575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0896900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1075110	Not Available	503	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10047034	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300004281\|Ga0066397_10155407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	526	Open in IMG/M
3300005168\|Ga0066809_10107156	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300005332\|Ga0066388_105423336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	646	Open in IMG/M
3300005332\|Ga0066388_105574708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	637	Open in IMG/M
3300005446\|Ga0066686_11066449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	521	Open in IMG/M
3300005457\|Ga0070662_100482798	Not Available	1032	Open in IMG/M
3300005713\|Ga0066905_100516257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	996	Open in IMG/M
3300005713\|Ga0066905_100811344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	812	Open in IMG/M
3300005764\|Ga0066903_101691499	All Organisms → cellular organisms → Bacteria → Proteobacteria	1204	Open in IMG/M
3300005764\|Ga0066903_105105684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	695	Open in IMG/M
3300005764\|Ga0066903_108470914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans	524	Open in IMG/M
3300006046\|Ga0066652_101561692	Not Available	609	Open in IMG/M
3300006163\|Ga0070715_10879337	Not Available	550	Open in IMG/M
3300006173\|Ga0070716_100916457	Not Available	687	Open in IMG/M
3300006800\|Ga0066660_10953996	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300006800\|Ga0066660_11204426	Not Available	594	Open in IMG/M
3300006904\|Ga0075424_100852726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	972	Open in IMG/M
3300009012\|Ga0066710_101548091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1020	Open in IMG/M
3300009089\|Ga0099828_10529912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1062	Open in IMG/M
3300009137\|Ga0066709_101984115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	807	Open in IMG/M
3300009143\|Ga0099792_10412173	All Organisms → cellular organisms → Bacteria → Proteobacteria	829	Open in IMG/M
3300009147\|Ga0114129_12229216	Not Available	659	Open in IMG/M
3300010047\|Ga0126382_10439431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1030	Open in IMG/M
3300010047\|Ga0126382_11854238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	569	Open in IMG/M
3300010048\|Ga0126373_10715037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1060	Open in IMG/M
3300010048\|Ga0126373_10757107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1032	Open in IMG/M
3300010048\|Ga0126373_11300955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	793	Open in IMG/M
3300010358\|Ga0126370_10840425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	823	Open in IMG/M
3300010359\|Ga0126376_12766465	Not Available	540	Open in IMG/M
3300010361\|Ga0126378_11286305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	827	Open in IMG/M
3300010361\|Ga0126378_13171448	Not Available	523	Open in IMG/M
3300010362\|Ga0126377_12248107	Not Available	621	Open in IMG/M
3300010366\|Ga0126379_11384063	Not Available	809	Open in IMG/M
3300010366\|Ga0126379_13458653	Not Available	529	Open in IMG/M
3300010366\|Ga0126379_13513320	Not Available	525	Open in IMG/M
3300010373\|Ga0134128_10691318	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300010376\|Ga0126381_103410853	Not Available	625	Open in IMG/M
3300012189\|Ga0137388_10719384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	927	Open in IMG/M
3300012199\|Ga0137383_11080184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	582	Open in IMG/M
3300012202\|Ga0137363_10384521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1167	Open in IMG/M
3300012356\|Ga0137371_11382496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300012357\|Ga0137384_11314783	Not Available	570	Open in IMG/M
3300012361\|Ga0137360_10407781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1146	Open in IMG/M
3300012362\|Ga0137361_10565390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1043	Open in IMG/M
3300012948\|Ga0126375_11326652	Not Available	606	Open in IMG/M
3300012971\|Ga0126369_11709771	Not Available	718	Open in IMG/M
3300012971\|Ga0126369_12525427	Not Available	599	Open in IMG/M
3300012971\|Ga0126369_12635277	Not Available	587	Open in IMG/M
3300014150\|Ga0134081_10069283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1076	Open in IMG/M
3300015245\|Ga0137409_11109289	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300015357\|Ga0134072_10315232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	588	Open in IMG/M
3300015371\|Ga0132258_12285483	All Organisms → cellular organisms → Bacteria	1356	Open in IMG/M
3300016270\|Ga0182036_10163744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1597	Open in IMG/M
3300016270\|Ga0182036_11632487	Not Available	543	Open in IMG/M
3300016294\|Ga0182041_10936859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	780	Open in IMG/M
3300016294\|Ga0182041_11042014	Not Available	741	Open in IMG/M
3300016294\|Ga0182041_11134236	Not Available	711	Open in IMG/M
3300016319\|Ga0182033_10214513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1540	Open in IMG/M
3300016319\|Ga0182033_10977331	Not Available	752	Open in IMG/M
3300016319\|Ga0182033_11193173	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300016341\|Ga0182035_11515963	Not Available	603	Open in IMG/M
3300016387\|Ga0182040_10743514	Not Available	805	Open in IMG/M
3300016404\|Ga0182037_10459220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1060	Open in IMG/M
3300016404\|Ga0182037_10774342	Not Available	826	Open in IMG/M
3300016445\|Ga0182038_10368269	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300021560\|Ga0126371_13128344	Not Available	560	Open in IMG/M
3300021560\|Ga0126371_13819959	Not Available	508	Open in IMG/M
3300025915\|Ga0207693_11481160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300025916\|Ga0207663_10292028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1215	Open in IMG/M
3300026507\|Ga0257165_1048448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	762	Open in IMG/M
3300026547\|Ga0209156_10354831	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300026552\|Ga0209577_10292036	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300026555\|Ga0179593_1179999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3307	Open in IMG/M
3300027748\|Ga0209689_1390055	Not Available	533	Open in IMG/M
3300027874\|Ga0209465_10031331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2504	Open in IMG/M
3300028536\|Ga0137415_10337600	Not Available	1310	Open in IMG/M
3300028811\|Ga0307292_10507709	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300031545\|Ga0318541_10602652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	614	Open in IMG/M
3300031546\|Ga0318538_10083101	All Organisms → cellular organisms → Bacteria → Proteobacteria	1629	Open in IMG/M
3300031546\|Ga0318538_10177830	Not Available	1131	Open in IMG/M
3300031564\|Ga0318573_10082331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1627	Open in IMG/M
3300031572\|Ga0318515_10066037	Not Available	1850	Open in IMG/M
3300031573\|Ga0310915_10658237	Not Available	740	Open in IMG/M
3300031640\|Ga0318555_10739181	Not Available	531	Open in IMG/M
3300031668\|Ga0318542_10414604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	696	Open in IMG/M
3300031680\|Ga0318574_10319528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	903	Open in IMG/M
3300031681\|Ga0318572_10055539	All Organisms → cellular organisms → Bacteria	2144	Open in IMG/M
3300031681\|Ga0318572_10062578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2032	Open in IMG/M
3300031736\|Ga0318501_10592030	Not Available	608	Open in IMG/M
3300031744\|Ga0306918_10955399	Not Available	666	Open in IMG/M
3300031748\|Ga0318492_10120279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1305	Open in IMG/M
3300031751\|Ga0318494_10040179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2437	Open in IMG/M
3300031765\|Ga0318554_10087006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1747	Open in IMG/M
3300031769\|Ga0318526_10072739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1345	Open in IMG/M
3300031778\|Ga0318498_10343463	Not Available	667	Open in IMG/M
3300031780\|Ga0318508_1027747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1419	Open in IMG/M
3300031781\|Ga0318547_10210516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1164	Open in IMG/M
3300031781\|Ga0318547_10263900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1040	Open in IMG/M
3300031794\|Ga0318503_10025835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1691	Open in IMG/M
3300031795\|Ga0318557_10043067	All Organisms → cellular organisms → Bacteria	1877	Open in IMG/M
3300031795\|Ga0318557_10105538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1249	Open in IMG/M
3300031795\|Ga0318557_10165459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1003	Open in IMG/M
3300031798\|Ga0318523_10009669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3870	Open in IMG/M
3300031819\|Ga0318568_10138543	Not Available	1481	Open in IMG/M
3300031880\|Ga0318544_10108435	Not Available	1050	Open in IMG/M
3300031880\|Ga0318544_10373262	Not Available	554	Open in IMG/M
3300031894\|Ga0318522_10027943	Not Available	1887	Open in IMG/M
3300031896\|Ga0318551_10187528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1140	Open in IMG/M
3300031910\|Ga0306923_10913605	Not Available	960	Open in IMG/M
3300031910\|Ga0306923_11517421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	700	Open in IMG/M
3300031912\|Ga0306921_11993663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	618	Open in IMG/M
3300031941\|Ga0310912_11099873	Not Available	607	Open in IMG/M
3300031946\|Ga0310910_10132151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1891	Open in IMG/M
3300031946\|Ga0310910_10847117	Not Available	719	Open in IMG/M
3300031947\|Ga0310909_10779784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	791	Open in IMG/M
3300031959\|Ga0318530_10144641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	964	Open in IMG/M
3300032001\|Ga0306922_10304589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1711	Open in IMG/M
3300032025\|Ga0318507_10180029	Not Available	909	Open in IMG/M
3300032035\|Ga0310911_10496569	Not Available	707	Open in IMG/M
3300032039\|Ga0318559_10367618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	670	Open in IMG/M
3300032044\|Ga0318558_10092142	All Organisms → cellular organisms → Bacteria → Proteobacteria	1409	Open in IMG/M
3300032055\|Ga0318575_10371232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	725	Open in IMG/M
3300032059\|Ga0318533_10710904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	737	Open in IMG/M
3300032063\|Ga0318504_10048948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1767	Open in IMG/M
3300032064\|Ga0318510_10531917	Not Available	511	Open in IMG/M
3300032065\|Ga0318513_10610261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300032076\|Ga0306924_11381330	Not Available	752	Open in IMG/M
3300032094\|Ga0318540_10057885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1755	Open in IMG/M
3300032094\|Ga0318540_10578728	Not Available	541	Open in IMG/M
3300032261\|Ga0306920_100670191	Not Available	1530	Open in IMG/M
3300032261\|Ga0306920_101782904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	869	Open in IMG/M
3300032261\|Ga0306920_103560372	Not Available	574	Open in IMG/M
3300032261\|Ga0306920_103592766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	571	Open in IMG/M
3300032261\|Ga0306920_104336751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300033290\|Ga0318519_10256433	Not Available	1013	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.12%
Host-Associated	Host-Associated	2.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.12%
Plants	Host-Associated → Plants	2.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.16%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	87.77%
Loam	Environmental → Terrestrial → Soil → Loam	9.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.72%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	53.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.62%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.47%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.39%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.47%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.47%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.44%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.44%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.44%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.72%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_04255751	3300000033	Soil	LSTNLDEAHRRAEALFKKEQQLRVGTIAEYEAEQRAMREKTARLRALRLA
ICChiseqgaiiDRAFT_08969001	3300000033	Soil	LSINTDEAHRRAEALFKKEQQLREAQQAMAEYQAGLHAMREKT
AP72_2010_repI_A01DRAFT_10751102	3300000579	Forest Soil	LSMNADDAHRRAGALFKKEQQLREAQQAMAEYQAELQA
AF_2010_repII_A1DRAFT_100470343	3300000597	Forest Soil	MNSDEAHRRAEALFKKQQPLREGEQAMAKHQAELLAMR
Ga0066397_101554071	3300004281	Tropical Forest Soil	MHSDEALRRAQALFRKEQQAREGEQAMAEYQAKLDAMREKTAR
Ga0066809_101071561	3300005168	Soil	MNSDEAHRRAEALFKKEQQSREAQQATAEYDAEQRAVQEKTA
Ga0066388_1054233361	3300005332	Tropical Forest Soil	LSMDSDQAHRRAGALFRKEQQLREGQQAMAEYQAKLDAMREKTARLRA
Ga0066388_1055747081	3300005332	Tropical Forest Soil	MTVEETRRAETLFKKEQQQREAEKAMAEYQAELQATREKTARLRAL
Ga0066686_110664491	3300005446	Soil	LSTNVHEPHRRAEALFKKEQQLREGQQAMTEYQAELRAMREKTARLRAL
Ga0070662_1004827983	3300005457	Corn Rhizosphere	LSTPSDEAHRRAEALFKQDQPPHEGQQGMAEYQANLDVIREK
Ga0066905_1005162571	3300005713	Tropical Forest Soil	LSMNSDEAHRRAEALFKKEQQLREGQQTMAEYQAEL
Ga0066905_1008113441	3300005713	Tropical Forest Soil	VSVNTDETRRRAETLFKKEQQLREAQQAMAEYQAQ
Ga0066903_1016914991	3300005764	Tropical Forest Soil	VSVNADETRRRAETLFKKEQQLREAQQAMAEYQAQLHATREKTARLR
Ga0066903_1051056841	3300005764	Tropical Forest Soil	LSTNLDEAHRRAEALFKKEQRLREGEQAMAEYQAE
Ga0066903_1084709141	3300005764	Tropical Forest Soil	LSMNTDEARRRAEALFKKEQQSHEAQQAMTEYEAELQAMREKTARLRA
Ga0066652_1015616921	3300006046	Soil	LSAHSDEALRRAEALFKKEQQAREGQQAMAEYHAKLDVIREN
Ga0070715_108793372	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	LSTPSDEAHRRAEAQFKQDQQAPKGQQRMAEYQANLDA
Ga0070716_1009164572	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LSTNLDEAHRRAEALFKKEQQLRVGTIAEYEAEQR
Ga0066660_109539962	3300006800	Soil	MNTDETHRRAEALFKKGQQLRGGGQAMTEYQTELQA
Ga0066660_112044261	3300006800	Soil	LSVNTDEARRRAETLFKKEQQLREAQQAMTEYQAGLR
Ga0075424_1008527262	3300006904	Populus Rhizosphere	LRMNTDETHRRAEALFKKEQQLRGGGQAMTEYQTELQATREKTARLRA
Ga0066710_1015480911	3300009012	Grasslands Soil	MDTEEARRRAGALFKKEQQSREAEQAMTDYQAQLKAMREKTARLR
Ga0099828_105299121	3300009089	Vadose Zone Soil	LSVNTDEARRRAETLFKKEQQLREAQQAMTEYQAG
Ga0066709_1019841152	3300009137	Grasslands Soil	MEFQLSMDTEEARRRAGALFKKEQQSREAEQAMTDYQ
Ga0099792_104121732	3300009143	Vadose Zone Soil	LSVNTDEARRRAETLFKKEQQLREAEQAMTEYQAELRAMREKTA
Ga0114129_122292161	3300009147	Populus Rhizosphere	LSTPSDEAHRRAEALFKQDQQAPKGQQRMAEYHAN
Ga0126382_104394311	3300010047	Tropical Forest Soil	MSMDTEETRRRAQTLFKKEQQLREGQQAMAEYQAQLLAMR
Ga0126382_118542382	3300010047	Tropical Forest Soil	VSVNTDETRRRAETLFKKEQQLREAQQAMAEYQAQLHATREKTA
Ga0126373_107150373	3300010048	Tropical Forest Soil	LSVNTDEARRRAEALFKKEQQLREAQQAMAEYQAELRMMREKTARLR
Ga0126373_107571071	3300010048	Tropical Forest Soil	VNTDESRRRAEALFKKEQQSREAQQAMAEYQAELRMMREKTARL
Ga0126373_113009553	3300010048	Tropical Forest Soil	LSVNTDESRRRAEALFKKEQQSREAQQAMAEYQAELRMMR
Ga0126370_108404251	3300010358	Tropical Forest Soil	MHSDEALRRAQALFRKEQQAREGEQAMAEYQAKLDAM
Ga0126376_127664651	3300010359	Tropical Forest Soil	MHSDEALRRAQALFRKEQQAREGQQAMAEHQAKLD
Ga0126378_112863053	3300010361	Tropical Forest Soil	LSVNTDESRRRAEALFKKEQQSREAQQAMAEYQAELRMMREKTAR
Ga0126378_131714481	3300010361	Tropical Forest Soil	VNTDESRRRAEALFKKEQQSREAQQAMAEYQAELR
Ga0126377_122481071	3300010362	Tropical Forest Soil	MDSDLTHRRAEALFKKQEQAREGQQAMAEYQANLDAMREKTA
Ga0126379_113840631	3300010366	Tropical Forest Soil	MNSDEAHRRAEALFKKERQLREGQQTMPEYQAELRATREKTA
Ga0126379_134586532	3300010366	Tropical Forest Soil	MHSDEATRRAQALFRKEQQAREGQQAMAEHQAKLD
Ga0126379_135133201	3300010366	Tropical Forest Soil	VNTDESRRRAEALFKKEQQSREAQQAMAEYQAELHMMREKTARL
Ga0134128_106913181	3300010373	Terrestrial Soil	MTVEETRRRAETLFKKEQQQREAQQAMSEYQAGLRVMREK
Ga0126381_1034108532	3300010376	Tropical Forest Soil	MSPVAPHEAHRRAETPFKKEKQLGEGQQAMAEYQARATQEKT
Ga0137388_107193843	3300012189	Vadose Zone Soil	LSVNTDEARRRAEALFKKEQQLREAQQAMAEYQAGL
Ga0137383_110801841	3300012199	Vadose Zone Soil	MSTNADEAHRRAEALFKKEQQLREGQQAMAEYQTELRAMRDKTARLRALRL
Ga0137363_103845211	3300012202	Vadose Zone Soil	LSVNTDEARRRAETLFKKEQQLREAQQAMTEYQAGL
Ga0137371_113824961	3300012356	Vadose Zone Soil	MNADEAHRRAEALFKKEQQLREGQQAMAEYQTELRAMRDKTARLRALR
Ga0137384_113147832	3300012357	Vadose Zone Soil	MNSDEAHRRAEALFKKERQLREGQQTMAEYQAELRAMRE
Ga0137360_104077814	3300012361	Vadose Zone Soil	LSVNTDEARRRAETLFKKEQQLREAQQAMTEYQAGLRMMR
Ga0137361_105653903	3300012362	Vadose Zone Soil	LSKNADEAHRRAGALFKKEQQSREAQLAMVEYQAELRAMREKTARLRAVCTENLIRID*
Ga0126375_113266522	3300012948	Tropical Forest Soil	MHNEDAQRRASALFKKEQQSREAEKAMADYQADLQATREKTARL
Ga0126369_117097711	3300012971	Tropical Forest Soil	MHSNEALRRAQALFRKEQQAREGQQAMAEYQAKLDAMR
Ga0126369_125254271	3300012971	Tropical Forest Soil	VNTDESRRRAEALFKKEQQSREAQQAMAEYQAELHMM
Ga0126369_126352772	3300012971	Tropical Forest Soil	LSVNTDESRRRAEALFKKEQQSREAQQAMAEYQAELRMMREKTARL
Ga0134081_100692832	3300014150	Grasslands Soil	MEFQLSMDTEEARRRAGALFKKEQQSREAEQAMSDYEAQL
Ga0137409_111092892	3300015245	Vadose Zone Soil	MADTVSPDRAAALLKKEQQAREGQQAWAEYEAQINAIRDKTARLR
Ga0134072_103152322	3300015357	Grasslands Soil	MEFQLSMETEEARRRAGALFKKEQQSREAEQAMADYEAQLQAMRE
Ga0132258_122854831	3300015371	Arabidopsis Rhizosphere	MNVDEPHRRAEALFKKEQQLREGQQAMSEYQAELRAMRDKTARLRALR
Ga0182036_101637445	3300016270	Soil	VNTDESRRRAEALFKKEQQSREAQQAMAEYQAELH
Ga0182036_116324871	3300016270	Soil	LSMNTDEAHRRAEALFKKEQQFSGGQQATTQHQAEL
Ga0182041_109368593	3300016294	Soil	MNSDEAHRRAEALFKKEQQLREGQQTMAEYQAELRAMREKT
Ga0182041_110420141	3300016294	Soil	MLDINADEAHRRAEALFKKEQQLREGQQAMAQYQAEL
Ga0182041_111342361	3300016294	Soil	LSTNLDEVHRRAEALFKKQQPLREGEQAMAEYQAELLAMREKTARL
Ga0182033_102145134	3300016319	Soil	LSTNTDEAHRRAEALFKKEQQSHEAQQAMTEYEAELQAMREKT
Ga0182033_109773312	3300016319	Soil	LSTNLDEVHRRAEALFKKQQPLREGEQAMAEYQAELLAMRE
Ga0182033_111931732	3300016319	Soil	MNSDEAHRRAEALFKKEQQLREGQEAMAEYQAEPRAM
Ga0182035_115159631	3300016341	Soil	LSMNTDEAHRRAEALFKKEQQFSGGQQATTQHQAELQAM
Ga0182040_107435143	3300016387	Soil	MLDINADEAHRRAEALFKKEQQLREGQQAMAQYQAELRATR
Ga0182037_104592201	3300016404	Soil	LSVNTDEARRRAEALFKKEQQLREAQQAMAEYQAEQHMMREKTARL
Ga0182037_107743422	3300016404	Soil	MNSDEAHHRAEALFKKERQLREGQQTMPEYQAELRATREK
Ga0182038_103682692	3300016445	Soil	MNSDEAHRHAEALFKKEQQLREGQQAMAEYQAELRAMRE
Ga0126371_131283442	3300021560	Tropical Forest Soil	LSVNTDESRRRAEALFKKEQQSREAQQAIAEYQAE
Ga0126371_138199591	3300021560	Tropical Forest Soil	LSMHSDEALRRAQALFRKEQQAREGQKAMAEYEAKLDVVREKT
Ga0207693_114811602	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LSMNTDEAHRRAEALFKKEQQSHEAQQAMTEYEAELQAMREK
Ga0207663_102920281	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LTISHEAQRRAEALFKKEQQGRQAMTDYQANLDAMREKTA
Ga0257165_10484481	3300026507	Soil	LSVNTDEARRRAETLFKKEQQLREAEQAMTEYQAELRAM
Ga0209156_103548312	3300026547	Soil	LSMQSDQAHRRAEALFKKEKQLREGQQAMAEYEAKLRATQKKTARLRAL
Ga0209577_102920362	3300026552	Soil	MSVEETRRAETLFKKEQQLREAEKAMADYRAELQATR
Ga0179593_11799991	3300026555	Vadose Zone Soil	MNTDEAHRRAEALFKKEQQSHEAQQAMTEYEAELQA
Ga0209689_13900551	3300027748	Soil	LSVNTDEARRRAETLFKKEQQLREAEQAMTEYQAELHA
Ga0209465_100313317	3300027874	Tropical Forest Soil	VNTDESRRRAEALFKKEQQSREAQQAMAEYQAELRMMREKTAR
Ga0137415_103376002	3300028536	Vadose Zone Soil	MNTDEAHRCAEALFKKEQQSHEAQQAMTEYEAELQAMR
Ga0307292_105077091	3300028811	Soil	MTVEETRRRAETLFKKEQQQREAQQAMSEYQAGVRAMRE
Ga0318541_106026521	3300031545	Soil	MLDINADEAHRRAEALFKKEQQLREGQQAMAQYQAELRATREK
Ga0318538_100831011	3300031546	Soil	VSVNTDETRRRAETLFKKEQQLREAQQAMAEYQAQLHATREKTARLRA
Ga0318538_101778303	3300031546	Soil	LSMNADDAHRRAGALFKKEQQLREAQQAMAEYQAELQ
Ga0318573_100823315	3300031564	Soil	LSVNTDESRRRAEALFKKEQQSREAQQAMAEYQAELHMMR
Ga0318515_100660374	3300031572	Soil	MLGINADEAHRRAEALFKKEQQLREGQQAMAQYQAE
Ga0310915_106582372	3300031573	Soil	MHSDEAVRRAQALFRKEQQAREGQQATAEYQAKLDAVREKTA
Ga0318555_107391811	3300031640	Soil	LSMNTDEAHRRAEALFKKEQQSHEAQQAMTEYEAELQAMREKTA
Ga0318542_104146043	3300031668	Soil	LSVNTDEARRRAEALFKKEQQLREAQQAMAEYQAGLRMMSEKTAR
Ga0318574_103195281	3300031680	Soil	LSTNTDEAHRRAEALFKKEQQSHEAQQAMTEYEAELQAMREKTA
Ga0318572_100555391	3300031681	Soil	LSVNTDESRRRAEALFKKEQQSREAQQAMAEYQAELHM
Ga0318572_100625785	3300031681	Soil	LSVNTDEARRRAEALFKKEQQLREAQQAMAEYQAE
Ga0318501_105920303	3300031736	Soil	MHNEDAQRRASALFKKEQQSREAEKAMADYQADLQATREK
Ga0306918_109553991	3300031744	Soil	MNSHRRAEALFKKEQQLREGQQTMAEYQAELRAMR
Ga0318492_101202794	3300031748	Soil	VNTDESRRRAEALFKKEQQSREAQQAMAEYQAELHMMREKT
Ga0318494_100401791	3300031751	Soil	LSVNTDEARRRAEALFKKEQQLREAQQAMAEYQAELHM
Ga0318554_100870064	3300031765	Soil	LSVNTDESRRRAEALFKKEQQSREAQQAMAEYQAELRMMREKTA
Ga0318526_100727393	3300031769	Soil	LSMNADDAHRRAGALFKKEQQLREAQQAMAEYQAEL
Ga0318498_103434631	3300031778	Soil	MDSDQARHRAEALFKKEQQAREGQQAMAEYQAKLDAMSEKTARL
Ga0318508_10277471	3300031780	Soil	LSVNTDESRRRAEALFKKEQQSREAQQAMAEYQAELRMM
Ga0318547_102105165	3300031781	Soil	LSVNTDEARRRAEALFKKEQQLREAQQAMAEYQAELH
Ga0318547_102639001	3300031781	Soil	LSVNTDEARRRAEALFKKEQQLREAQQAMAEYQAEQHMMR
Ga0318503_100258351	3300031794	Soil	LSVNTDESRRRAEALFKKEQQSREAQQAMAEYQAELRM
Ga0318557_100430674	3300031795	Soil	LSVNTDESRRRAEALFKKEQQSREAQQAMAEYQAELHMMREK
Ga0318557_101055381	3300031795	Soil	LSVNNDESRRRAEALFKKEQQSREAQQAMAEYQAELHTMREKT
Ga0318557_101654591	3300031795	Soil	LSVNTDEARRRAEALFKKEQQLREAQQAMAEYQAEQHMMREKTARMR
Ga0318523_100096696	3300031798	Soil	MHSDEAVRRAQALFRKEQQAREGQQATAEYQAKLDAVREKTARLLFL
Ga0318568_101385433	3300031819	Soil	MLGINADEAHRRAEALFKKEQQLREGQQAMAQYQAELR
Ga0318544_101084352	3300031880	Soil	MNTDEAHRRAEALFKKEQQFSGSQQATTQHQAELRAMREKTARL
Ga0318544_103732621	3300031880	Soil	MNSHRRAEALFKKEQQLREGQQTMAEYQAELRAMREKTARL
Ga0318522_100279434	3300031894	Soil	MLGINADEAHRRAEALFKKEQQLREGQQAMAQYQAELRATREK
Ga0318551_101875281	3300031896	Soil	LSVNTDEARRRAEALFKKEQQLREAQQAMAEYQAEL
Ga0306923_109136051	3300031910	Soil	MNSDEAHHRAEALFKKERQLREGQQTMPEYQAELRATR
Ga0306923_115174211	3300031910	Soil	MNSDEAHRRAEALFKKEQQLREGQEAMAEYQAEPRAMQEKT
Ga0306921_119936631	3300031912	Soil	LSVNSDGAHRRAEALFKKEQQLREGQQPMAEYQAELRAAREKT
Ga0310912_110998732	3300031941	Soil	MRRADALFKKEQQSREAQQATAEYQAELQATREKTER
Ga0310910_101321514	3300031946	Soil	LSTNTDEAHRRAEALFKKEQQSHEAQQAMTEYEAELQAMREK
Ga0310910_108471171	3300031946	Soil	MLDINADEAHRRAEALFKKEQQLREGQQAMAQYQA
Ga0310909_107797842	3300031947	Soil	MHSNEHEARRRAEALFKKEQQLREAQQAMADYQAKLHAM
Ga0318530_101446411	3300031959	Soil	MHSDEALRRAQALFRKEQQAREGQQAMAEYQAKLDAMRE
Ga0306922_103045891	3300032001	Soil	LSTNTDEAHRRAEALFKKEQQSHEAQQAMTEYEAELQAMREKTAR
Ga0318507_101800293	3300032025	Soil	LSMHNEDAQRRASALFKKEQQSREAEKAMADYQADLQATREKTARL
Ga0310911_104965691	3300032035	Soil	MLDINADEAHRRAEALFKKEQQLREGQQAMAQYQAE
Ga0318559_103676182	3300032039	Soil	MNLDEAHRRAEALFKKEQQLHEGQQAMAEYQAELRAMRE
Ga0318558_100921421	3300032044	Soil	VSVNTDETRRRAETLFKKEQQLREAQQAMAEYQAQLH
Ga0318575_103712321	3300032055	Soil	MHSDEALRRAQALFRKEQQAREGQQAMAEYQAKLDAMREK
Ga0318533_107109041	3300032059	Soil	LSVNTDETRRRAEALFKKEQQLREAQQAMAEYQVGLHMMRE
Ga0318504_100489484	3300032063	Soil	LSVNTDESRRRAEALFKKEQQSREAQQAMAEYQAEL
Ga0318510_105319171	3300032064	Soil	LSMNTDEAHRRAEALFKKEQQSHEAQQAMTEYEAE
Ga0318513_106102611	3300032065	Soil	LSANTDEARRRAEALFKKEQQLREAQQAMAEYQPGLHMM
Ga0306924_113813303	3300032076	Soil	MLDINADEAHRRAEALFKKEQQLREGQQAMAQYQAELRA
Ga0318540_100578854	3300032094	Soil	LSVNTDEARRRAEALFKKEQQLREAQQAMAEYQAEQHM
Ga0318540_105787281	3300032094	Soil	VSMDSDQARHRAEALFKKEQQVREGQQAMAEYQAKLDAMREK
Ga0306920_1006701914	3300032261	Soil	LSMNTDEAHRRAEALFKKEQQSHEAQQAMTEYEAELQAMREKTAR
Ga0306920_1017829041	3300032261	Soil	MNSDETHRRAEALFKKEQQLREGQQAMAEYQAELR
Ga0306920_1035603721	3300032261	Soil	MNSHRRAEALFKKEQQLREGQQTMAEYQAELRAMREKTARLRAL
Ga0306920_1035927661	3300032261	Soil	LSMNSDEAHRRAEALFKKEQQLREDQQAMAEYQAELRTMREKTARLRA
Ga0306920_1043367511	3300032261	Soil	MNLDEAHRRAEALFKKEKQLGEVQQPMAEYQAELCA
Ga0318519_102564333	3300033290	Soil	LSMNADDAHRRAGALFKKEQQLREAQQAMAEYQAELQATREMTARLRALRL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F055221

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences