Metagenome Family F055131

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F055131
Family Type	Metagenome
Number of Sequences	139
Average Sequence Length	77 residues
Representative Sequence	MTDMNGLNLTTHRAPASVWDRRGWDGTPEQLAMTRWLLGIGGAALALQGLRQRSVMGSLLAGVGGSLAWWALTGE
Number of Associated Samples	113
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	41.61 %
% of genes near scaffold ends (potentially truncated)	98.56 %
% of genes from short scaffolds (< 2000 bps)	97.12 %
Associated GOLD sequencing projects	106
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (98.561 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (7.914 % of family members)
Environment Ontology (ENVO)	Unclassified (27.338 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.640 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.72% β-sheet: 0.00% Coil/Unstructured: 57.28%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF01725	Ham1p_like	13.67
PF00383	dCMP_cyt_deam_1	0.72
PF12704	MacB_PCD	0.72
PF01035	DNA_binding_1	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG0127	Inosine/xanthosine triphosphate pyrophosphatase, all-alpha NTP-PPase family	Nucleotide transport and metabolism [F]	13.67
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	0.72
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.56 %
Unclassified	root	N/A	1.44 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.56 %
Unclassified	root	N/A	1.44 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.56 %
Unclassified	root	N/A	1.44 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	84.89 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.04 %
Unclassified	root	N/A	1.44 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	84.89 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	2.88 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	2.16 %
Unclassified	root	N/A	1.44 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	84.89 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	2.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.16 %
Unclassified	root	N/A	1.44 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	84.89 %
Deinococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales	2.88 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	1.44 %
Unclassified	root	N/A	1.44 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	84.89 %
Deinococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae	2.88 %
Chlorogloeopsidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Chlorogloeopsidaceae	1.44 %
Unclassified	root	N/A	1.44 %
Chroococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	84.89 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	2.88 %
Chlorogloeopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Chlorogloeopsidaceae → Chlorogloeopsis	1.44 %
Unclassified	root	N/A	1.44 %
Chroococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Chroococcaceae	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	84.89 %
Chlorogloeopsis fritschii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Chlorogloeopsidaceae → Chlorogloeopsis → Chlorogloeopsis fritschii	1.44 %
Deinococcus humi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus humi	1.44 %
Unclassified	root	N/A	1.44 %
Deinococcus ficus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus ficus	0.72 %
Gloeocapsa	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Chroococcaceae → Gloeocapsa	0.72 %
Deinococcus proteolyticus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus proteolyticus	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	84.89 %
Chlorogloeopsis fritschii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Chlorogloeopsidaceae → Chlorogloeopsis → Chlorogloeopsis fritschii	1.44 %
Deinococcus humi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus humi	1.44 %
Unclassified	root	N/A	1.44 %
unclassified Gloeocapsa	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Chroococcaceae → Gloeocapsa → unclassified Gloeocapsa	0.72 %
Deinococcus ficus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus ficus	0.72 %
Deinococcus proteolyticus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus proteolyticus	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	84.89 %
Chlorogloeopsis fritschii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Chlorogloeopsidaceae → Chlorogloeopsis → Chlorogloeopsis fritschii	1.44 %
Deinococcus humi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus humi	1.44 %
Unclassified	root	N/A	1.44 %
Gloeocapsa sp. PCC 7428	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Chroococcaceae → Gloeocapsa → unclassified Gloeocapsa → Gloeocapsa sp. PCC 7428	0.72 %
Deinococcus ficus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus ficus	0.72 %
Deinococcus proteolyticus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus proteolyticus	0.72 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908032\|Perma_A_C_ConsensusfromContig73104	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101483686	All Organisms → cellular organisms → Bacteria → Acidobacteria	975	Open in IMG/M
3300000891\|JGI10214J12806_11765367	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300001686\|C688J18823_10866571	All Organisms → cellular organisms → Bacteria → Acidobacteria	573	Open in IMG/M
3300004081\|Ga0063454_102041757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Chlorogloeopsidaceae → Chlorogloeopsis → Chlorogloeopsis fritschii	508	Open in IMG/M
3300004153\|Ga0063455_100733556	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300004156\|Ga0062589_101975884	All Organisms → cellular organisms → Bacteria → Acidobacteria	591	Open in IMG/M
3300004156\|Ga0062589_102782807	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300004157\|Ga0062590_100876135	All Organisms → cellular organisms → Bacteria → Acidobacteria	837	Open in IMG/M
3300004157\|Ga0062590_102189459	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300004157\|Ga0062590_102291020	All Organisms → cellular organisms → Bacteria → Acidobacteria	568	Open in IMG/M
3300004157\|Ga0062590_102617943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Chroococcaceae → Gloeocapsa → unclassified Gloeocapsa → Gloeocapsa sp. PCC 7428	536	Open in IMG/M
3300004463\|Ga0063356_103553939	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300004463\|Ga0063356_105598855	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300004479\|Ga0062595_101648296	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300004633\|Ga0066395_10323594	All Organisms → cellular organisms → Bacteria → Acidobacteria	849	Open in IMG/M
3300004633\|Ga0066395_10745874	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300004643\|Ga0062591_100793787	All Organisms → cellular organisms → Bacteria → Acidobacteria	872	Open in IMG/M
3300005167\|Ga0066672_10644391	All Organisms → cellular organisms → Bacteria → Acidobacteria	684	Open in IMG/M
3300005186\|Ga0066676_10399070	All Organisms → cellular organisms → Bacteria → Acidobacteria	927	Open in IMG/M
3300005293\|Ga0065715_10869885	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300005330\|Ga0070690_100340453	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300005330\|Ga0070690_100462751	All Organisms → cellular organisms → Bacteria → Acidobacteria	942	Open in IMG/M
3300005330\|Ga0070690_101461070	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300005331\|Ga0070670_100580172	All Organisms → cellular organisms → Bacteria → Acidobacteria	1002	Open in IMG/M
3300005335\|Ga0070666_10188850	All Organisms → cellular organisms → Bacteria → Acidobacteria	1447	Open in IMG/M
3300005335\|Ga0070666_10388050	All Organisms → cellular organisms → Bacteria → Acidobacteria	1003	Open in IMG/M
3300005343\|Ga0070687_100427562	All Organisms → cellular organisms → Bacteria → Acidobacteria	875	Open in IMG/M
3300005355\|Ga0070671_100201018	All Organisms → cellular organisms → Bacteria	1689	Open in IMG/M
3300005444\|Ga0070694_101718816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus humi	534	Open in IMG/M
3300005450\|Ga0066682_10637279	All Organisms → cellular organisms → Bacteria → Acidobacteria	664	Open in IMG/M
3300005467\|Ga0070706_100568005	All Organisms → cellular organisms → Bacteria → Acidobacteria	1055	Open in IMG/M
3300005467\|Ga0070706_101825847	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
3300005468\|Ga0070707_100961434	All Organisms → cellular organisms → Bacteria → Acidobacteria	819	Open in IMG/M
3300005468\|Ga0070707_101495616	All Organisms → cellular organisms → Bacteria → Acidobacteria	642	Open in IMG/M
3300005518\|Ga0070699_100206683	All Organisms → cellular organisms → Bacteria	1747	Open in IMG/M
3300005529\|Ga0070741_11554305	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300005532\|Ga0070739_10231586	All Organisms → cellular organisms → Bacteria → Acidobacteria	922	Open in IMG/M
3300005560\|Ga0066670_10346956	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
3300005564\|Ga0070664_100240035	All Organisms → cellular organisms → Bacteria	1627	Open in IMG/M
3300005564\|Ga0070664_100465495	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300005575\|Ga0066702_10798905	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
3300005578\|Ga0068854_100957105	All Organisms → cellular organisms → Bacteria → Acidobacteria	756	Open in IMG/M
3300005578\|Ga0068854_101508776	All Organisms → cellular organisms → Bacteria → Acidobacteria	610	Open in IMG/M
3300005615\|Ga0070702_101358123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Chlorogloeopsidaceae → Chlorogloeopsis → Chlorogloeopsis fritschii	579	Open in IMG/M
3300005713\|Ga0066905_100349404	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300005718\|Ga0068866_10122102	All Organisms → cellular organisms → Bacteria → Acidobacteria	1469	Open in IMG/M
3300005718\|Ga0068866_10848667	All Organisms → cellular organisms → Bacteria → Acidobacteria	638	Open in IMG/M
3300005764\|Ga0066903_103399736	All Organisms → cellular organisms → Bacteria → Acidobacteria	859	Open in IMG/M
3300005834\|Ga0068851_10913055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus proteolyticus	550	Open in IMG/M
3300005841\|Ga0068863_101516479	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300005985\|Ga0081539_10174937	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300006031\|Ga0066651_10395019	All Organisms → cellular organisms → Bacteria → Acidobacteria	738	Open in IMG/M
3300006173\|Ga0070716_100549297	All Organisms → cellular organisms → Bacteria → Acidobacteria	861	Open in IMG/M
3300006804\|Ga0079221_11300793	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300006847\|Ga0075431_100648935	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300006853\|Ga0075420_101803427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus ficus	523	Open in IMG/M
3300006854\|Ga0075425_102476027	All Organisms → cellular organisms → Bacteria → Acidobacteria	575	Open in IMG/M
3300006871\|Ga0075434_101013736	All Organisms → cellular organisms → Bacteria → Acidobacteria	844	Open in IMG/M
3300006871\|Ga0075434_102636431	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300006880\|Ga0075429_101988835	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300006894\|Ga0079215_11471236	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300006903\|Ga0075426_11044052	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300006904\|Ga0075424_100252551	All Organisms → cellular organisms → Bacteria	1875	Open in IMG/M
3300006904\|Ga0075424_102525259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus humi	538	Open in IMG/M
3300006914\|Ga0075436_100224624	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M
3300007255\|Ga0099791_10095404	All Organisms → cellular organisms → Bacteria → Acidobacteria	1365	Open in IMG/M
3300009012\|Ga0066710_101967013	All Organisms → cellular organisms → Bacteria → Acidobacteria	870	Open in IMG/M
3300009089\|Ga0099828_11032797	All Organisms → cellular organisms → Bacteria → Acidobacteria	732	Open in IMG/M
3300009089\|Ga0099828_11747311	All Organisms → cellular organisms → Bacteria → Acidobacteria	547	Open in IMG/M
3300009098\|Ga0105245_10557075	All Organisms → cellular organisms → Bacteria → Acidobacteria	1169	Open in IMG/M
3300009177\|Ga0105248_12290872	All Organisms → cellular organisms → Bacteria → Acidobacteria	615	Open in IMG/M
3300009650\|Ga0105857_1109135	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300009651\|Ga0105859_1106728	All Organisms → cellular organisms → Bacteria → Acidobacteria	759	Open in IMG/M
3300010036\|Ga0126305_10370672	All Organisms → cellular organisms → Bacteria → Acidobacteria	940	Open in IMG/M
3300010401\|Ga0134121_10151311	All Organisms → cellular organisms → Bacteria → Acidobacteria	1980	Open in IMG/M
3300011119\|Ga0105246_12089671	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300011269\|Ga0137392_10930482	All Organisms → cellular organisms → Bacteria → Acidobacteria	715	Open in IMG/M
3300012204\|Ga0137374_10300249	All Organisms → cellular organisms → Bacteria → Acidobacteria	1318	Open in IMG/M
3300012685\|Ga0137397_11007355	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300012913\|Ga0157298_10200682	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300012922\|Ga0137394_10305776	All Organisms → cellular organisms → Bacteria → Acidobacteria	1358	Open in IMG/M
3300012957\|Ga0164303_10902263	All Organisms → cellular organisms → Bacteria → Acidobacteria	619	Open in IMG/M
3300013297\|Ga0157378_11164371	All Organisms → cellular organisms → Bacteria → Acidobacteria	810	Open in IMG/M
3300014880\|Ga0180082_1150903	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300014969\|Ga0157376_10152040	All Organisms → cellular organisms → Bacteria → Acidobacteria	2088	Open in IMG/M
3300015264\|Ga0137403_10883020	All Organisms → cellular organisms → Bacteria → Acidobacteria	745	Open in IMG/M
3300015371\|Ga0132258_11985140	All Organisms → cellular organisms → Bacteria → Acidobacteria	1464	Open in IMG/M
3300015373\|Ga0132257_100317597	All Organisms → cellular organisms → Bacteria → Acidobacteria	1875	Open in IMG/M
3300015373\|Ga0132257_100531666	All Organisms → cellular organisms → Bacteria → Acidobacteria	1446	Open in IMG/M
3300015373\|Ga0132257_104220811	All Organisms → cellular organisms → Bacteria → Acidobacteria	523	Open in IMG/M
3300015374\|Ga0132255_103048028	All Organisms → cellular organisms → Bacteria → Acidobacteria	715	Open in IMG/M
3300016319\|Ga0182033_11937715	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300016357\|Ga0182032_11870741	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300017657\|Ga0134074_1207353	All Organisms → cellular organisms → Bacteria → Acidobacteria	697	Open in IMG/M
3300018066\|Ga0184617_1037281	All Organisms → cellular organisms → Bacteria → Acidobacteria	1184	Open in IMG/M
3300018072\|Ga0184635_10229786	All Organisms → cellular organisms → Bacteria → Acidobacteria	737	Open in IMG/M
3300018075\|Ga0184632_10457684	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300018422\|Ga0190265_10905071	All Organisms → cellular organisms → Bacteria → Acidobacteria	1005	Open in IMG/M
3300019487\|Ga0187893_10528006	All Organisms → cellular organisms → Bacteria → Acidobacteria	764	Open in IMG/M
3300021080\|Ga0210382_10433928	All Organisms → cellular organisms → Bacteria → Acidobacteria	582	Open in IMG/M
3300023077\|Ga0247802_1037866	All Organisms → cellular organisms → Bacteria → Acidobacteria	732	Open in IMG/M
3300024279\|Ga0247692_1058835	All Organisms → cellular organisms → Bacteria → Acidobacteria	598	Open in IMG/M
3300025321\|Ga0207656_10274829	All Organisms → cellular organisms → Bacteria → Acidobacteria	830	Open in IMG/M
3300025922\|Ga0207646_10716580	All Organisms → cellular organisms → Bacteria → Acidobacteria	894	Open in IMG/M
3300025923\|Ga0207681_10676926	All Organisms → cellular organisms → Bacteria → Acidobacteria	856	Open in IMG/M
3300025934\|Ga0207686_10930415	All Organisms → cellular organisms → Bacteria → Acidobacteria	703	Open in IMG/M
3300025941\|Ga0207711_10183019	All Organisms → cellular organisms → Bacteria → Acidobacteria	1906	Open in IMG/M
3300025941\|Ga0207711_10228597	All Organisms → cellular organisms → Bacteria → Acidobacteria	1703	Open in IMG/M
3300025945\|Ga0207679_11067189	All Organisms → cellular organisms → Bacteria → Acidobacteria	741	Open in IMG/M
3300025972\|Ga0207668_11307937	All Organisms → cellular organisms → Bacteria → Acidobacteria	653	Open in IMG/M
3300026221\|Ga0209848_1051929	All Organisms → cellular organisms → Bacteria → Acidobacteria	744	Open in IMG/M
3300026326\|Ga0209801_1197215	All Organisms → cellular organisms → Bacteria → Acidobacteria	810	Open in IMG/M
3300027773\|Ga0209810_1314558	All Organisms → cellular organisms → Bacteria → Acidobacteria	582	Open in IMG/M
3300027835\|Ga0209515_10581651	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300027873\|Ga0209814_10209270	All Organisms → cellular organisms → Bacteria → Acidobacteria	843	Open in IMG/M
3300028536\|Ga0137415_11179661	All Organisms → cellular organisms → Bacteria → Acidobacteria	580	Open in IMG/M
3300028807\|Ga0307305_10464002	All Organisms → cellular organisms → Bacteria → Acidobacteria	569	Open in IMG/M
3300031561\|Ga0318528_10474237	All Organisms → cellular organisms → Bacteria → Acidobacteria	672	Open in IMG/M
3300031720\|Ga0307469_11113160	All Organisms → cellular organisms → Bacteria → Acidobacteria	743	Open in IMG/M
3300031771\|Ga0318546_10459857	All Organisms → cellular organisms → Bacteria → Acidobacteria	891	Open in IMG/M
3300031854\|Ga0310904_11145033	All Organisms → cellular organisms → Bacteria → Acidobacteria	559	Open in IMG/M
3300031910\|Ga0306923_12177275	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300031944\|Ga0310884_10311876	All Organisms → cellular organisms → Bacteria → Acidobacteria	880	Open in IMG/M
3300032001\|Ga0306922_10239207	All Organisms → cellular organisms → Bacteria → Acidobacteria	1951	Open in IMG/M
3300032001\|Ga0306922_11317370	All Organisms → cellular organisms → Bacteria → Acidobacteria	730	Open in IMG/M
3300032044\|Ga0318558_10505722	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300032122\|Ga0310895_10161614	All Organisms → cellular organisms → Bacteria → Acidobacteria	977	Open in IMG/M
3300032122\|Ga0310895_10235291	All Organisms → cellular organisms → Bacteria → Acidobacteria	839	Open in IMG/M
3300032122\|Ga0310895_10301304	All Organisms → cellular organisms → Bacteria → Acidobacteria	758	Open in IMG/M
3300032180\|Ga0307471_102487694	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300032180\|Ga0307471_102914976	All Organisms → cellular organisms → Bacteria → Acidobacteria	607	Open in IMG/M
3300032205\|Ga0307472_100986654	All Organisms → cellular organisms → Bacteria → Acidobacteria	788	Open in IMG/M
3300032205\|Ga0307472_102499590	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300032770\|Ga0335085_10034315	All Organisms → cellular organisms → Bacteria	7024	Open in IMG/M
3300032954\|Ga0335083_10385803	All Organisms → cellular organisms → Bacteria → Acidobacteria	1202	Open in IMG/M
3300034354\|Ga0364943_0192819	All Organisms → cellular organisms → Bacteria → Acidobacteria	747	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.91%
Host-Associated	Host-Associated	33.09%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.59%
Plants	Host-Associated → Plants	33.09%
Aquatic	Environmental → Aquatic	4.32%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.23%
Sediment	Environmental → Aquatic → Sediment	2.88%
Freshwater	Environmental → Aquatic → Freshwater	1.44%
Cave	Environmental → Terrestrial → Cave	0.72%
Floodplain	Environmental → Terrestrial → Floodplain	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.17%
Loam	Environmental → Terrestrial → Soil → Loam	14.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.39%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.32%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.72%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.72%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.07%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.35%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.32%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.16%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.16%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.44%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.72%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.72%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.72%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.72%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.47%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.60%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.60%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.16%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.16%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	2.16%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.16%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.16%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.16%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.16%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.16%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.44%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.44%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.72%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.72%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.72%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.72%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908032	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009650	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061	Environmental	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014880	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300024279	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026221	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027835	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Perma_A_C_00027370	2124908032	Soil	MTDTHGLNLTTHRAPESVWERSGWDGTREQLAMTRWLVGIGGGALALQGLHRRTIAGSLLAGLGGGLAWWALTGE
INPhiseqgaiiFebDRAFT_1014836862	3300000364	Soil	MTERFRGADSELNLSTHRAPVSVWDRRGWDGTREQLTLTRWLVGAAGAALAVQGMRQRSVTGGLLAGFG
JGI10214J12806_117653672	3300000891	Soil	MTDNNELNLTTHRASASVWDRRGWDGTRERLAMTRWLLGIGGCALALQGVRQKSMTGGLLAG
C688J18823_108665712	3300001686	Soil	MTEANELNLTTHRAATSVWERRGWNGTREQLAMTRMLVGVGGGALAIQGLRQRTVLGSLLAGMGGGLAWWALTGEGDLSEARR
Ga0063454_1020417571	3300004081	Soil	MNETHGLNLTTHRAPASVWDRRGWDGTREQLATTRWLLGVGGGALALQGLRQRSVMGSVLAGIGGS
Ga0063455_1007335561	3300004153	Soil	MTEANELNLTTHRAATSVWERRGWNGTREQLAMTRMLVGVGGGALAIQGLRQRTVLGSLLAGMGGGL
Ga0062589_1019758841	3300004156	Soil	MNDNNELNLTTHRAPASVWDRRGWDGTRERLAMTRWLLGIGGCALALQGVRQKSITGGLLAGIGTSLAWYALSGEGDLSEAR
Ga0062589_1027828072	3300004156	Soil	MTERFLDGDSELNLSTHRATVSVWDRRGWNGTREQLTITRWMVGAAGAALAVQGMRQRNVAGGL
Ga0062590_1008761351	3300004157	Soil	MTSNSDLNLATHRDATSVWDRRGWDGTRERLAITRWLVGAGGGALAIQGLRQRNMAGSILAGLGGSLAWWALTGEGDFS
Ga0062590_1021894592	3300004157	Soil	MTETTTKITNLGAHRAPSSVWERQGWDGRREPLAMTRILVGVGGGALAVQGIRQNTWTGRMLAGLGGTLAWWALTGEGDLSGARRW
Ga0062590_1022910201	3300004157	Soil	MNDNNELNLTTHRAPASVWDRRGWDGTRERLAMTRWLLGIGGCALALQGVRQKSITGGLLAGIGTSLAWYALSGEGD
Ga0062590_1026179431	3300004157	Soil	MSQSLHPRSGMDEMGELNLTTHRAPTSVWDRRGWDGSRERVATTRMLLGVGGGALALQGLRQRSVAGSMLAGFGGG
Ga0063356_1005428321	3300004463	Arabidopsis Thaliana Rhizosphere	MPDNFSPPRKTNLTSHRAPASVWDKSGWDGTPERLALTRLLVGIGGGALALQALRQRSWGGGVLAGIGGTLAWWAL
Ga0063356_1035539392	3300004463	Arabidopsis Thaliana Rhizosphere	MTDSDPSDRDLNLSTHRQPNSVWERRGWNGTRERLAISRVLVGIGGGALAIQALRRRNVFLAGLGGSLAWWALTGEGDLKDA
Ga0063356_1055988551	3300004463	Arabidopsis Thaliana Rhizosphere	MTHEESARELNLTMHRAPESVWDRRGWDGTREQFTMMRWMVGVGGAALAIQGIRQRSALGGLLAGFGGGL
Ga0062595_1016482962	3300004479	Soil	MNETHGLNLTTHRASGSVWERRGWDGTRGQLATTRWLLGVGGGALALQGLRQRSVMGSVLAGIGGSLAWWAL
Ga0066395_103235941	3300004633	Tropical Forest Soil	MNEAHGLNLTTHRASVSVWDRRGWNGTREQLAATRWLVGIGGAALAVQGLRQKSVVGSVLAGIGGGLAWWALTGEGDL
Ga0066395_107458742	3300004633	Tropical Forest Soil	MAERRELNLRTHRAPVSVWDRRGWDGTPDQPALTRWLLGIGGSALAIQGLRQRSVAGSFLAGIGGTVAWWALSGEGDLSRARRFLTGLAER
Ga0062591_1007937871	3300004643	Soil	MSDTSELNLTTHRAAASVWDRRGWDGTRERIAMTRWLLGAGGSALALQGLRQKSVLGGLLAGIGGSLAIWSLS
Ga0066672_106443911	3300005167	Soil	MTTHTNGLNLTTHRAPASVWDRRGWDGTRRELALTRWLVGLGGAALALQGMRQKSVSGSLLAG
Ga0066676_103990703	3300005186	Soil	MTHHTSESELNLTTHRAPASVWDRRGWNGTPEQLTLMRWLVGIGGGALAIQGVRQRSIAGSILAGLGGTLAWWALT
Ga0065715_108698851	3300005293	Miscanthus Rhizosphere	MTERFRGADSELNLSTHRAPVSVWDRRGWDGTREQLTLTRWLVGAAGAALAVQGMRQRSVTGGLLAGFGGSLAWW
Ga0070690_1003404531	3300005330	Switchgrass Rhizosphere	MTDTHGLNLTTHRAAESVWERSGWDGTREQLAMTRWLVGVGGGALALQGLRQRSVAGSLLAGLGSGLAWWALTG
Ga0070690_1004627513	3300005330	Switchgrass Rhizosphere	MSDMSGLNLTTHRAPASVWDRRGWDGTRERMAMTRWLLGAGGSALALQGLRQRGVMGGLLAGIGGSLAWWALSGEGDL
Ga0070690_1014610701	3300005330	Switchgrass Rhizosphere	MTSTSDLNLATHRESASVWDRRGWDGTRERLTVTRWLVGAGGGVLAIQGLRQRSVSGAILAGLGGSL
Ga0070670_1005801721	3300005331	Switchgrass Rhizosphere	MSDMSELNLSTHRASASVWDRRGWDGTRERMAMTRWLLGAGGAALAVQGLRQKSAVGGLLAGIGGS
Ga0070666_101888503	3300005335	Switchgrass Rhizosphere	MTQSFSEELNLTTHRASVSVWDRRGWDGSREQRTPARWLVGLGGGALAVQGLRQRSVAGTLLAGFGASLAWWALAGEGGLS
Ga0070666_103880501	3300005335	Switchgrass Rhizosphere	MTDTHGLNLTTHRKVESVWERSGWDGTREQLAVTRWLVGIGGGALAVQGIRQRSVPGWLLAGLGGSLAWWALTGEGDLSDVRRWY
Ga0070687_1004275621	3300005343	Switchgrass Rhizosphere	MSDMSELNLSTHRASASVWDRRGWDGTRERMAMTRWLLGAGGAALALQGLRQKTAMGGLLAGIGGGLAWFA
Ga0070671_1002010181	3300005355	Switchgrass Rhizosphere	MAPLPPNLHHGEGMNETHGLNLTTHRAPASVWDRRGWDGTRSQLATTRWLLGVGGGALALQGLRQRSVMGSVLAGIGGSLAWWALTGEGD
Ga0070694_1017188161	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MSDMSGINLTTHRAAASVWDRRGWDGTRERMAMTRWLLGAGGSALALQGLRQRGVMGGLLAGIGGGLAWWALSGEGDLSEARRW
Ga0066682_106372792	3300005450	Soil	MTHHTSESELNLTTHRAPISVWDRQGWDGTREQLTLMRWLVGIGGGALAIQGARQRSIAGSILAGLGGTLAWWALTGEG
Ga0070706_1005680051	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTETHGLNLTTHRAPASVWDRRGWDGTREQLTMTRWLVGIGGGALALQGLRQRSVAGSILAGLGGSLAW
Ga0070706_1018258472	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSHQPSPRELNLTTHRATASVWDRRGWDGTREPPTMARWLVGISGSVLAIQGLRQRSVAGAFLAGLGTGLACWALTGELDLSD
Ga0070707_1009614342	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTNPSYGSDSGLNLTTHRSPVSVWDRSGWDGTREQLTITRWLVGAGGAALAVQGLRQRSVAGGVLAGFGGSLAWWALTGEGDLSNAR
Ga0070707_1014956161	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTDNHRLNLATHRSPNSVWERSGWDGTREQLATTRWLVGIGGAALAVQGLRQRSITGSLLAGV
Ga0070699_1002066831	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VSRNLHLSSVMTDFSHAEGLNLTTHRAPTSVWDRRGWDGTREQLALTRWLVGIGGAALAVQGLRQRTVTGSLLGGLGASLAWWALTGEGDLS
Ga0070741_115543052	3300005529	Surface Soil	MEQTHTDSSGLNLMAHRAPQSVWDRRGWDGSSEPFTTSRLLVGIGGSALAVQGLRQRSWVGGMLAAVG
Ga0070739_102315861	3300005532	Surface Soil	MRFGMNKNSSGLNLTVQRAPASVWDRRGWDGSASEMTIVRWLVGAGGAALAIQGARQRGATGTMLAGLGGSLAWWALTGQGD
Ga0066670_103469561	3300005560	Soil	MHEQTPRELNITAHRASASVWDRRGWNGTSEQLTLSRWLVGVGGGALAVQGFRQRSVLGSILAGLGTTLAWWALSGEGDL
Ga0070664_1002400351	3300005564	Corn Rhizosphere	MPPNLHLIRHMTDTNELNLTTHRAAESVWERSGWDGTPEQLAVTRWLVGIGGGALALQGLRQRSIAGSFLAGIGSGLAWWALTGEGDLSDVR
Ga0070664_1004654951	3300005564	Corn Rhizosphere	MTDTPDLNLTTHRATASVWERSGWDGTREQLAITRWLVGIGGGALALQGLRQRTVAGSLLAGVGSGL
Ga0066702_107989052	3300005575	Soil	MTTHTSGLNLTTHRAPASVWDRRGWDGTRRELALTRWLVGLGGAALALQGMRQKSVSGSLLAG
Ga0068854_1009571052	3300005578	Corn Rhizosphere	MAPLPPNLHHGEGMNETHGLNLTTHRAPASVWDRRGWDGTRSQLATTRWLLGVGGGALALQGLRQRSVMGS
Ga0068854_1015087763	3300005578	Corn Rhizosphere	MTDTQGLNLTTHRAVESVWERSGWDGTREQLAMTRWLVGIGGGALALQGLRQRSVAGALLAGLGSGLAWWALTGE
Ga0070702_1013581231	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MTDNHRLNLATHRSPNSVWERSGWDGTREQLATTRWLVGIGGAALAVQGLRQRSITGSLLAGVGSSLAW
Ga0066905_1003494041	3300005713	Tropical Forest Soil	MTEAHGLNVTTHRAPVSVWDRRGWDGTREQLAMTRWLVGIGGAALAVQGLRQKSVVGSILAAVGGGLAWWALTGEGDLSQARRWYCEIV
Ga0068866_101221021	3300005718	Miscanthus Rhizosphere	MTDNNELNLTTHRASASVWDRRGWDGTRERLAMTRWLLGIGGCALALQGVRQKSVTGGLLAGIGTTLAWYALSG
Ga0068866_108486671	3300005718	Miscanthus Rhizosphere	MTERFSGDDSRHNLNTHRAPASVWDRRGWDGTREQLTLTRWLVGAAGAAIAVQGMRQRSVTGGLIAAFGGSLAWWAFTGECD
Ga0066903_1033997363	3300005764	Tropical Forest Soil	MEDFNASAEGNLGSHRAPASVWERRGWDGSRERLAVTRLLVGIGGGALAIQGIRQRTWTGRMLAGLGGT
Ga0068851_109130551	3300005834	Corn Rhizosphere	MNETHGLNLTTHRASGSVWERRGWDGTRGQLATTRWLLGVGGGALALQGLRQRSVMGSVLAGIGGSLAWWALTGEGDLSDARRW
Ga0068863_1015164791	3300005841	Switchgrass Rhizosphere	MPPNLHLIRGMTDTNELNLTTHRAAESVWERSGWDGTREQLAITRWLVGIGGGALALQGLRQRSVAGSILAGLGGGLAWWALTGE
Ga0081539_101749373	3300005985	Tabebuia Heterophylla Rhizosphere	MTHSDLNLKTHRDSTSVWDRRGWNGTRQQLAITRWMVGIGGGVLAVQGLRQRSLPGTLLAGIGGTLAWWALTGEGDLSEARQWFS
Ga0066651_103950191	3300006031	Soil	MHEQTPRELNITAHRASASVWDRRGWNGTSEQLTLSRWLVGVGGGALAVQGFRQRSVPGSILAGLGTTLAWWALSGEGDLS
Ga0070716_1005492973	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MDAQERKNLTTHRTPVSVWDRRGWDGTREQLAMTRWLIGIGGGALALQGLRQRSVAGSLLAGIGGSLAWWALTGE
Ga0079221_113007931	3300006804	Agricultural Soil	MMHGHTPRHSNLTAHRAPASVWNRRGWDGTPEQLAASRWLLGIGGGALALQGLRQKSVRGSILAGLGT
Ga0075431_1006489352	3300006847	Populus Rhizosphere	MSDMSELNLSTHRASASVWDRRGWDGTRERMAMTRWLLGAGGAALALQGLRQRTAIGGLLAGIGGSLAWFALS
Ga0075420_1018034271	3300006853	Populus Rhizosphere	MSDMSELNLSTHRASASVWDRRGWDGTRERMAMTRWLLGAGGAALALQGLRQRTAIGGLLAGIGGSLAWFAL
Ga0075425_1024760272	3300006854	Populus Rhizosphere	MAPFLETCPRKAGALMERDLNLTTHRAAASVWDRRGWDGTREQLTMPRWLLGIGGSALAVQGLRQRSVSGSLLAGVGTGLAWWALTGEGDLS
Ga0075434_1010137363	3300006871	Populus Rhizosphere	MTSNSDLNLATHRDTTSVWDRRGWDGTRERLAITRWLVGAGGGALAIQGLRQRNMAGSILAGLGGSL
Ga0075434_1026364312	3300006871	Populus Rhizosphere	MTEPSALNLSTHRSANSVWDRRGWDGTRQQLTVTRWLVGIGSGALAIQGLRQRSVSGSILAGLGGSLAWWALTGEGDLS
Ga0075429_1019888351	3300006880	Populus Rhizosphere	MTDRHMYEDLNLATHRQPTSVWDRSGWDGTRQQLAVSRWLVGIGGGALAIQALRRRRLTLAGIGGTLAWWALTGEGDLSEARRWFD
Ga0079215_114712361	3300006894	Agricultural Soil	MAMTDSVPHELNLTAHRAPESVWDRRGWDGSRERLAMTRILVGVGGGALAVQAIRQRTWTGRILAGIGGSLAWWALTGEGDL
Ga0075426_110440522	3300006903	Populus Rhizosphere	MTDTSRGVDSELNLATHRAPVSVWDRRGWDGTREQLTLTRWLVGAGGAALAVQGMRQRSVTGGLL
Ga0075424_1002525514	3300006904	Populus Rhizosphere	MTTNTSGLNLTTHRAPASVWDRRGWDGTRRELALTRWLVGLGGTALALQGMRQKSITGSLLAGIGGGLAWWAIAGEGDLSDVRRRIAAV
Ga0075424_1025252591	3300006904	Populus Rhizosphere	MEHLNSSAEGLNLGSHRAPSSVWERRGWDGTRERLAVTRLLVGIGGGALAIQGIRQRTWTGRVLAGLGGTLAWWALTGEG
Ga0075436_1002246241	3300006914	Populus Rhizosphere	MNETHGLNLTTHRASGSVWERRGWDGTRGQLATTRWLLGVGGGALALQGLRQRSVMGSVLAGIGGSLAWWALTGE
Ga0099791_100954041	3300007255	Vadose Zone Soil	MTDMNGLNLTTHRAPASVWDRRGWDGTPEQLAMTRWLLGIGGAALALQGLRQRSVMGSLLAGVGGSLAWWALTGE
Ga0066710_1019670132	3300009012	Grasslands Soil	MMHDTPRELNLTAHRTPASVWDRRGWDGTSEQLAFSRWLVGLGGGALAIQGFRQRSVPGSILAGLGTTLAWWALSGEGDLSEVRRRIGHL
Ga0099828_110327972	3300009089	Vadose Zone Soil	MMQETIARELNLTAHRAPLSVWDRRGWDGTREWPTVPRWLVGAGGAALAIQGLRQRSLAGSALAVVGGA
Ga0099828_117473112	3300009089	Vadose Zone Soil	MTETRGLNLMTETEGLNLATHRAAASVWDRRGWDGTREQLAMTRWLLGIGGGALALQGLRQRSVAGSILAGLG
Ga0105245_105570753	3300009098	Miscanthus Rhizosphere	LHLIGSMTDTHGLNLTTHRKVESVWERSGWDGTREQLALTRWLVGIGGGALAVQGLRQRSIPGWLLAGV
Ga0105248_122908721	3300009177	Switchgrass Rhizosphere	MTDTHGLNLTTHRAAESVWERSGWDGTREQLAMTRWLVGVGGGALALQGLRQRSVAGSLLAGLGSGLAWWALTGEGDL
Ga0105857_11091351	3300009650	Permafrost Soil	MTEIPGLNLTNHRAPESVWERRGWDGTREQLALTRWLVGIGGGVLAVQALRRRTLAGSLLAGFGGGL
Ga0105859_11067282	3300009651	Permafrost Soil	VPVIELASLSGMTDNHRLNMTAHRAPESVWDRRGWDGSRERLTLTRWLVGIGGAALAVQGLRHRTIAGSLLAGVGGSLAWW
Ga0126305_103706722	3300010036	Serpentine Soil	MAKSNGPRELNLQTHRAPESVWDRRGWDGSREQIAMTRLLLGVGGAALAVQGIRQGSWTGRALAGMGGTLAWWALTGEGDLSEA
Ga0134121_101513114	3300010401	Terrestrial Soil	MNEAHGLNLTTHRAPASVWDKRGWDGTREQLAMTRWLVGLGGTALALQGLRQKSVTGSLLAGIGGSLAWWALTGEG
Ga0105246_120896711	3300011119	Miscanthus Rhizosphere	MTEHELNLTTHRAAESVWKRSGWDGTREQLAMTRWLVGIGGGALAVQGLRQRRTSGWMLAGLGSGLAWWALTGEGDLSDARRWFTH
Ga0137392_109304822	3300011269	Vadose Zone Soil	MTETHGLNLTTHRAPASVWDRRGWDGTREQLTMTRWLVGIGGGALALQGLRQRSVAGSILAGLGGSL
Ga0137374_103002492	3300012204	Vadose Zone Soil	MADSTRQELNLTTHRAAASVWDRSGWDGTREQLAMTRLLLGLGGGALAVQGLRQRSVMGSLLAGVGGSLAWWALTG
Ga0137397_110073552	3300012685	Vadose Zone Soil	MTETHELNLTTHRAPASVWDRRGWDGTREQLTMTRWLVGIGGGALALQGLRQRSVAGSILAGLG
Ga0157298_102006821	3300012913	Soil	MAKTNGPRELNLQTHRAPESVWDRRGWDGTREQIAMTRLLLGIGGAALAVQGIRQRTWTGRALAGVGGSLAWWAFTSEGDLSCQAREW
Ga0137394_103057761	3300012922	Vadose Zone Soil	MTENPFPDELNLTAHRTSVSVWDRRGWDGSRERLTPARWLVGFGGAALAVHGLRQRSVAGALLAGLSGSLAWWA
Ga0164303_109022631	3300012957	Soil	MTSNSDLNLATHRDATSVWDRRGWDGTRERLAITRWLVGAGGGALAIQGLRQRNMAGSILAGLG
Ga0157378_111643712	3300013297	Miscanthus Rhizosphere	LHLIRGMTDTHGLNLTTHRKVESVWERSGWDGTREQLAVTRWLVGIGGGALAVQGIRQRSVPGWLLAGLGGSLAWWALTG
Ga0157380_125601782	3300014326	Switchgrass Rhizosphere	MTDQSADLNLTLATHRAPASVWERQGWDGSKEPLALTRWLLGIGGAALAIQGVRQRTFTGGVLAAIGGTLAWWALTGEG
Ga0180082_11509031	3300014880	Soil	MTDNPSHRKVNLTAHRAPASVWDKRGWDGTPERLALARLMVGVGGGALAIQALRKRSWGGGILAGLGGTLAWWALTGEGDLSQA
Ga0157376_101520401	3300014969	Miscanthus Rhizosphere	MTEHELNLTTHRAAESVWKRSGWDGTREQLAMTRWLVGIGGTALALQGLRQKSVTGSLLAGIGGSLAWWALTGE
Ga0137403_108830201	3300015264	Vadose Zone Soil	MTDMNGLNLTTHRAPASVWDRRGWDGTPEQLAMTRWLLGIGGAALALQGLRQRSVMGSLLAGVGGSLAWWALTGEGNLSE
Ga0132258_119851403	3300015371	Arabidopsis Rhizosphere	MNEISQAEGLNLTTHRAPASVWDKRGWDGTPERLALTRWLIGIGGCALAVQGLRQKNVTGSLLAGVGGSLAWWALTGEGDLSDAR
Ga0132257_1003175971	3300015373	Arabidopsis Rhizosphere	MTSNSDLNLATHRDATSVWDRRGWDGTRERLAITRWLVGAGGGALAIQGLRQRNMAGSILAGLGGSL
Ga0132257_1005316663	3300015373	Arabidopsis Rhizosphere	MMTDRLREADSELNLSTHRAPASVWDRRGWDGTREQLTLTRWLVVAGGAALAVQGMRRRTVMGGLLAGIGGSL
Ga0132257_1042208111	3300015373	Arabidopsis Rhizosphere	MTERFLRADNELNLSTHRAPVSVWDRRGWDGTREQLTLTRCLVGAAGAALAVQGIRQRNVTGGLLAGLGGSLAWWAL
Ga0132255_1030480281	3300015374	Arabidopsis Rhizosphere	MTEHELNLTTHRASESVWKRSGWDGTREQLAMTRWLVGIGGGALAVQGLRQRRTSGWMLAGLGSGLAWWALTGEGDLSDARR
Ga0182033_119377151	3300016319	Soil	MPLNLHSVHHMATNMSGLNLTTHRAPVSVWDRRGWDGTRNQITAIRWLVGIGGAALTIQGARRRSATGTMLAGL
Ga0182032_118707412	3300016357	Soil	MTDSSGLNLATHRAPTSVWDRRGWDGTREQFTITRWLLGVSGGAIAVQGLRQRGVSGTLLAGLGASLAWWALTGEGDL
Ga0134074_12073532	3300017657	Grasslands Soil	LPDLSLNLHPPPGMLQEQTPPELNITAHRAPANVWDRRGWNGTPEQLALSRWLVGIGGSALALQGLRRRSVSGSILAGVGTTLAWWAL
Ga0184617_10372813	3300018066	Groundwater Sediment	MPPNLHRFPGMTDNHRLNLATHRSPNSVWERSGWDGTREQLATTRWLVGIGGAALAVQGLRQRSITGSLLAGVGSSLAWWALTGE
Ga0184635_102297861	3300018072	Groundwater Sediment	MNDNNELNLTTHRASASVWDRRGWDGTRERLATTRWLLGIGGTALALQGLRQKTMTGGLLAGVGGSLAWWALSGEGDLSEARRWFRHL
Ga0184632_104576841	3300018075	Groundwater Sediment	MTNPSYGSDSGLNLTTHRAPVSVWDRSGWDGTREQLTATRWLVGAGGAALAVQGLRQRSVAGGVLAGL
Ga0190265_109050711	3300018422	Soil	MNSTHSPSSELNLTTHRAAESVWDRSGWNGERERLAVTRILIGVGGGALALQGLRQGTWSGRLLAGLGGGLAWWALTGEGDLS
Ga0187893_105280061	3300019487	Microbial Mat On Rocks	MTETQNRDDLNLAVHRSETSVWDRRGWDGTRERPAMSRMLLGVAGGLLAVQGLRQRSWTGRVLAGLGGAVAWWALTGEGD
Ga0210382_104339281	3300021080	Groundwater Sediment	MSSSLHPKTAMTENTADLNLTMATHRAPASVWERQGWDGSRERLALTRWLVGVGGAALAIQGMRQRTVIGGTLAGIGGTLAWWALTGEGD
Ga0247802_10378661	3300023077	Soil	MTDTHGLNLTTHRKVESVWDRSGWDGTREQLALTRWLVGIGGGALAVQGLRQRSVPGWLLAGIGGGLAWWALTGEGDLSEVRRWYGS
Ga0247692_10588352	3300024279	Soil	MNEAHGLNLTTHRAPASVWDRRGWDGTREQLAMTRWLVGIGGTALALQGLRQKSVTGSLLAGIGGSLAWWALTGEGDLSEA
Ga0207656_102748292	3300025321	Corn Rhizosphere	MTDTHGLNLTTHRKVESVWDRSGWDGTREQLALTRWLVGIGGGALAVQGLRQRSVPGWLLAGIGGGLAWWALTGEGD
Ga0207646_107165801	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MDAQERKNLTTHRTPVSVWDRRGWDGTREQLAMTRWLIGIGGGALALQGLRQRSVAGSLLAGIGGSLAWWALTGEGD
Ga0207681_106769261	3300025923	Switchgrass Rhizosphere	MNDNNELNLTTHRAPASVWDRRGWDGTRERLAMTRWLLGIGGCALALQGVRQKSMTGGLLAGIGTASP
Ga0207686_109304151	3300025934	Miscanthus Rhizosphere	MTDNNELNLTTHRASASVWDRRGWDGTRERLAMTRWLLGIGGCALALQGVRQKSITGGLLAGIGTSLAWYALS
Ga0207711_101830195	3300025941	Switchgrass Rhizosphere	MTQSFSEELNLTTHRASVSVWDRRGWDGSREQRTPARWLVGLGGGALAVQGLRQRSVAGTLLAGFGASLAWWALAGEGDLS
Ga0207711_102285971	3300025941	Switchgrass Rhizosphere	MTERFSGDDSRHNLNTHRAPASVWDRRGWDGTREQLTLTRWLVGAAGAAIAVQGMRQRSVTGGLIAAFGGSLAWWA
Ga0207679_110671892	3300025945	Corn Rhizosphere	MTDTPDLNLTTHRATASVWERSGWDGTREQLAITRWLVGIGGGALALQGLRQRTVAGSLLAGVGSGLAWWALTGEG
Ga0207668_113079372	3300025972	Switchgrass Rhizosphere	MTQSFSEELNLTTHRASVSVWDRRGWDGSREQRTPARWLVGLGGGALAVQGLRQRSVAGTLLAGFGASLAWWALAGEGDLSE
Ga0209848_10519291	3300026221	Permafrost Soil	MTDNHRLNMTAHRAPESVWDRRGWDGSRERLTLTRWLVGIGGAALAVQGLRHRTIAGSLLAGVGGSLAWWALTGEG
Ga0209801_11972152	3300026326	Soil	MTTHTNGLNLTTHRAPASVWDRRGWDGTRRELALTRWLVGLGGAALALQGMRQKSVSGSLLAGVGGSLAWWAMTGEGDLSDARRWYAAV
Ga0209810_13145582	3300027773	Surface Soil	MRFGMNKNSSGLNLTVQRAPASVWDRRGWDGSASEMTIVRWLVGAGGAALAIQGARQRGATGTMLAGLGGSLAWWALTGQGDL
Ga0209515_105816512	3300027835	Groundwater	MTDTTCASDSELNLTTHRAPVSVWDRRGWDGTREQLALTRWLVGIGGSVLALQGLRQRSVAGGILAGFGGSLAWWALTGEGDLSGARR
Ga0209814_102092701	3300027873	Populus Rhizosphere	MTDTTRGFDSELNLATHRAHASVWDRRGWDGTREQIALTRWLVGAGGAALAVQGLRQRSVAGGLLAGLG
Ga0137415_111796612	3300028536	Vadose Zone Soil	MTDTQGLNLTTHRATESVWERSGWDGNREKLAVTRWLVGIGGGVLALQGLRQRSIVGSLLAGVGGGL
Ga0307305_104640021	3300028807	Soil	MNPNSELNLTTHRAPASVWDRRGWDGTRERLGVSRWLLGIGGGALALQGIRRKSLTGGLLAGIGGSLAWWALTG
Ga0318528_104742371	3300031561	Soil	MTTNTSGLNLTTHRAATSVWDRRGWNGSTEYAVTRWLVGVGGAALAIQGVRHRSRIGTMLAGLGGTLMWWALTGEGDLT
Ga0307469_111131602	3300031720	Hardwood Forest Soil	MTHSSIANELNLTAHRAPASVWDRRGWDGTRERITAIRWLLGVGGGALAVQALRQRSWTGRMLA
Ga0318546_104598573	3300031771	Soil	MTEHELNLTTHRSSESVWNRSGWDGTREQLAMTRWLVGIGGSALAVQGLRQRKTSGWMLAGLGSGLAWWALTGEGDLSDARRWFAHAL
Ga0310904_111450331	3300031854	Soil	MTSNSDLNLATHRDAASVWERRGWDGTRERLAITRWLVGAGGGVLAIQGLRQRSKAGSILAGLGG
Ga0306923_121772751	3300031910	Soil	MTTDTTGLNLTTHRAATSVWDRRGWNGSTEYAVTRWLVGVGGAALAIQGVRHRSRIGTMLAGLGGTLMWWALTGEGDL
Ga0310884_103118761	3300031944	Soil	MTHEESARELNLTMHRAPESVWDRRGWDGTREQFTMMRWMVGVGGAALAIQGIRQRSALGGLLAGFGGGLAWWAFSGEGDISEA
Ga0306922_102392071	3300032001	Soil	MTTDTTGLNLTTHRAATSVWDRRGWNGSTEYAVTRWLVGVGGAALAIQGVRHRSRIGTMLAGLGGTLMWWALTGEGDLTEA
Ga0306922_113173702	3300032001	Soil	MNPNWTPGLNLTAHRSGTSVWDRRGWDGTRDRPALSRWLIGVGGGALTLQGLRRRSLTGSVLAGVGAGLAWWALSGR
Ga0318558_105057222	3300032044	Soil	MTEHELNLTTHRSSESVWNRSGWDGTREQLAMTRWLVGIGGSALAVQGLRQRKTSGWMLAGLGSGLAWWALTGEG
Ga0310895_101616141	3300032122	Soil	MSDMSELNLSTHRASASVWDRRGWDGTRERMAMTRWLLGAGGAALALQGLRQKTAMGGLLAGIGGGLAWFALSGEGDLS
Ga0310895_102352912	3300032122	Soil	MTSNSDLNLATHRDATSVWDRRGWDGTRERLAITRWLVGAGGGALAIQGLRQRNMAGSILAGLGGSLAWWALTGEG
Ga0310895_103013042	3300032122	Soil	MTHEESARELNLTMHRAPESVWDRRGWDGTREQFTMMRWMVGVGGAALAIQGIRQRSALGGLLAGFGGGLAWWAFSGEG
Ga0307471_1024876942	3300032180	Hardwood Forest Soil	MTELSRDEDLNLSIHRAPASVWDRRGWDGTRERLALTRWLVGIGGGALAIQAIRRRTVTGGVLAGL
Ga0307471_1029149761	3300032180	Hardwood Forest Soil	MINERTSPELNITSHRASASVWDRRGWNGTSEQLAMSRWLVGIGGGALAVQGLRQRSVRGSILAGLGGSLAWWALS
Ga0307472_1009866542	3300032205	Hardwood Forest Soil	MDDFNTSAEGLNLGTHRAPASVWDRRGWDGTRERLAVTRLLLGIGGGALAIQGIRQRTWTGRVLAGLGGTLAWWALTGEGDLSDA
Ga0307472_1024995901	3300032205	Hardwood Forest Soil	MDATHELKNLTTHRTPVSVWDRRGWDGTREQLALTRWLVGIGGGALALQGLRQRSVTGSVLAGIGGTLAW
Ga0335085_100343151	3300032770	Soil	MNSNINELNLTVHRAESSVWNRRGWDGSHEVDAMRWLVGVGGAMLAVQGLRRRDVAGSMLAGLGGSLAWWAITGHGDLSDAKRWVGSV
Ga0335083_103858031	3300032954	Soil	MNSNINELNLTVHRAESSVWNRRGWDGSREVDAMRWLVGVGGAMLAVQGLRRRDVAGSMLAGLGGSLAWWAITGHGDLSDAKRWVGS
Ga0364943_0192819_460_747	3300034354	Sediment	MHRNLHALGFMATTNGPRELNLETHRAPESVWDRRGWDGTREQLAMSRLLLGIGGAALLVQGTRQRTWTGRALAGVGGSLAWWALSGEGDLSKARN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F055131

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences