Metagenome / Metatranscriptome Family F054908

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F054908
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	85 residues
Representative Sequence	DLHDRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLSDGKADSDPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Number of Associated Samples	104
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.44 %
% of genes near scaffold ends (potentially truncated)	97.84 %
% of genes from short scaffolds (< 2000 bps)	91.37 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.964 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.827 % of family members)
Environment Ontology (ENVO)	Unclassified (46.763 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (56.115 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 35.09% Coil/Unstructured: 64.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF13430	DUF4112	84.17
PF12697	Abhydrolase_6	7.91
PF01266	DAO	2.16
PF02913	FAD-oxidase_C	1.44
PF03219	TLC	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	1.44
COG3202	ATP/ADP translocase	Energy production and conversion [C]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.96 %
Unclassified	root	N/A	5.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.96 %
Unclassified	root	N/A	5.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.96 %
Unclassified	root	N/A	5.04 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.12 %
Unclassified	root	N/A	5.04 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.72 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	29.50 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	5.04 %
Unclassified	root	N/A	5.04 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	29.50 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	5.04 %
Unclassified	root	N/A	5.04 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	29.50 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	5.04 %
Unclassified	root	N/A	5.04 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	29.50 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	5.04 %
Unclassified	root	N/A	5.04 %
Corynebacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae	0.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10076598	All Organisms → cellular organisms → Bacteria → Proteobacteria	2833	Open in IMG/M
3300000956\|JGI10216J12902_104676979	All Organisms → cellular organisms → Bacteria → Proteobacteria	2048	Open in IMG/M
3300002077\|JGI24744J21845_10099416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	536	Open in IMG/M
3300004114\|Ga0062593_101465597	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300004114\|Ga0062593_102311333	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300004156\|Ga0062589_101327213	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300004157\|Ga0062590_100577389	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300004157\|Ga0062590_100902703	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300004480\|Ga0062592_101110182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	732	Open in IMG/M
3300005330\|Ga0070690_100962092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	671	Open in IMG/M
3300005331\|Ga0070670_100963800	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300005335\|Ga0070666_11183889	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	569	Open in IMG/M
3300005337\|Ga0070682_100188283	All Organisms → cellular organisms → Bacteria → Proteobacteria	1447	Open in IMG/M
3300005340\|Ga0070689_100558648	All Organisms → cellular organisms → Bacteria → Proteobacteria	987	Open in IMG/M
3300005340\|Ga0070689_101103751	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300005343\|Ga0070687_101284232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	543	Open in IMG/M
3300005345\|Ga0070692_10033209	All Organisms → cellular organisms → Bacteria → Proteobacteria	2600	Open in IMG/M
3300005345\|Ga0070692_10979071	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300005353\|Ga0070669_100473891	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300005353\|Ga0070669_101231961	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300005364\|Ga0070673_101196694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	712	Open in IMG/M
3300005441\|Ga0070700_100118559	All Organisms → cellular organisms → Bacteria → Proteobacteria	1770	Open in IMG/M
3300005441\|Ga0070700_100185699	All Organisms → cellular organisms → Bacteria → Proteobacteria	1450	Open in IMG/M
3300005441\|Ga0070700_100302696	All Organisms → cellular organisms → Bacteria	1168	Open in IMG/M
3300005441\|Ga0070700_100720922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	795	Open in IMG/M
3300005456\|Ga0070678_100672005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	931	Open in IMG/M
3300005457\|Ga0070662_101584191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	565	Open in IMG/M
3300005457\|Ga0070662_101924145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	511	Open in IMG/M
3300005535\|Ga0070684_101970666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	551	Open in IMG/M
3300005543\|Ga0070672_100057350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3057	Open in IMG/M
3300005543\|Ga0070672_101939842	Not Available	530	Open in IMG/M
3300005544\|Ga0070686_101339818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	599	Open in IMG/M
3300005548\|Ga0070665_102069577	All Organisms → cellular organisms → Bacteria → Proteobacteria	574	Open in IMG/M
3300005564\|Ga0070664_102181978	Not Available	526	Open in IMG/M
3300005577\|Ga0068857_101022303	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300005617\|Ga0068859_100410222	All Organisms → cellular organisms → Bacteria → Proteobacteria	1451	Open in IMG/M
3300005617\|Ga0068859_101456959	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300005719\|Ga0068861_100202210	All Organisms → cellular organisms → Bacteria → Proteobacteria	1668	Open in IMG/M
3300005719\|Ga0068861_101433702	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300005836\|Ga0074470_11532853	All Organisms → cellular organisms → Bacteria → Proteobacteria	5159	Open in IMG/M
3300005840\|Ga0068870_10221788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1158	Open in IMG/M
3300005840\|Ga0068870_11110275	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	569	Open in IMG/M
3300005841\|Ga0068863_100236092	All Organisms → cellular organisms → Bacteria → Proteobacteria	1764	Open in IMG/M
3300005843\|Ga0068860_101289495	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300005844\|Ga0068862_100457469	All Organisms → cellular organisms → Bacteria → Proteobacteria	1204	Open in IMG/M
3300005844\|Ga0068862_100900738	All Organisms → cellular organisms → Bacteria → Proteobacteria	869	Open in IMG/M
3300005844\|Ga0068862_101811019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	620	Open in IMG/M
3300006358\|Ga0068871_100173085	All Organisms → cellular organisms → Bacteria → Proteobacteria	1852	Open in IMG/M
3300006358\|Ga0068871_100658017	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300006606\|Ga0074062_12430395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	515	Open in IMG/M
3300006806\|Ga0079220_10825399	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300006881\|Ga0068865_101221652	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300006953\|Ga0074063_13878948	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300007004\|Ga0079218_11672783	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300009094\|Ga0111539_12267345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	630	Open in IMG/M
3300009177\|Ga0105248_10419783	All Organisms → cellular organisms → Bacteria → Proteobacteria	1507	Open in IMG/M
3300009177\|Ga0105248_11813955	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300010397\|Ga0134124_10461696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1221	Open in IMG/M
3300010399\|Ga0134127_13059059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	546	Open in IMG/M
3300010400\|Ga0134122_10023100	All Organisms → cellular organisms → Bacteria → Proteobacteria	4680	Open in IMG/M
3300010403\|Ga0134123_10252234	All Organisms → cellular organisms → Bacteria → Proteobacteria	1536	Open in IMG/M
3300011119\|Ga0105246_11699270	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300012137\|Ga0137346_1062806	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300012882\|Ga0157304_1060034	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	608	Open in IMG/M
3300012899\|Ga0157299_10329986	Not Available	516	Open in IMG/M
3300012902\|Ga0157291_10185249	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300012905\|Ga0157296_10008410	All Organisms → cellular organisms → Bacteria → Proteobacteria	1688	Open in IMG/M
3300012916\|Ga0157310_10251867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	669	Open in IMG/M
3300013308\|Ga0157375_12118927	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300014312\|Ga0075345_1193503	Not Available	511	Open in IMG/M
3300014326\|Ga0157380_11243570	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300014326\|Ga0157380_11500337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	727	Open in IMG/M
3300014745\|Ga0157377_10335042	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300015200\|Ga0173480_10790867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	605	Open in IMG/M
3300015200\|Ga0173480_10943424	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300015201\|Ga0173478_10401559	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300015371\|Ga0132258_10538749	All Organisms → cellular organisms → Bacteria → Proteobacteria	2924	Open in IMG/M
3300017965\|Ga0190266_10649749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	649	Open in IMG/M
3300018422\|Ga0190265_12763234	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300018429\|Ga0190272_12940802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	527	Open in IMG/M
3300018469\|Ga0190270_10344616	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300019362\|Ga0173479_10850053	Not Available	511	Open in IMG/M
3300020061\|Ga0193716_1176151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	836	Open in IMG/M
3300022880\|Ga0247792_1124883	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	543	Open in IMG/M
3300022889\|Ga0247785_1022377	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300022908\|Ga0247779_1078912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	860	Open in IMG/M
3300023057\|Ga0247797_1072162	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	518	Open in IMG/M
3300023069\|Ga0247751_1051696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	691	Open in IMG/M
3300023274\|Ga0247763_1226953	Not Available	530	Open in IMG/M
3300023275\|Ga0247776_10270292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	633	Open in IMG/M
3300024055\|Ga0247794_10126713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	781	Open in IMG/M
3300024055\|Ga0247794_10178141	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300025905\|Ga0207685_10329490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	764	Open in IMG/M
3300025923\|Ga0207681_10350061	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300025923\|Ga0207681_10997194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	703	Open in IMG/M
3300025925\|Ga0207650_11010657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	707	Open in IMG/M
3300025925\|Ga0207650_11129940	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300025936\|Ga0207670_10014705	All Organisms → cellular organisms → Bacteria → Proteobacteria	4654	Open in IMG/M
3300025938\|Ga0207704_10315656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1203	Open in IMG/M
3300025940\|Ga0207691_10027505	All Organisms → cellular organisms → Bacteria → Proteobacteria	5331	Open in IMG/M
3300025940\|Ga0207691_10571190	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300025960\|Ga0207651_11041588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	732	Open in IMG/M
3300025960\|Ga0207651_12091658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	508	Open in IMG/M
3300026075\|Ga0207708_10145878	All Organisms → cellular organisms → Bacteria → Proteobacteria	1860	Open in IMG/M
3300026075\|Ga0207708_10159174	All Organisms → cellular organisms → Bacteria	1782	Open in IMG/M
3300026075\|Ga0207708_10788243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	817	Open in IMG/M
3300026075\|Ga0207708_11440504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	605	Open in IMG/M
3300026088\|Ga0207641_10812254	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300026089\|Ga0207648_10596878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1017	Open in IMG/M
3300026095\|Ga0207676_10031268	All Organisms → cellular organisms → Bacteria → Proteobacteria	4003	Open in IMG/M
3300026095\|Ga0207676_12546275	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	508	Open in IMG/M
3300026118\|Ga0207675_101254266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	762	Open in IMG/M
3300026118\|Ga0207675_102118668	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300026121\|Ga0207683_10283504	All Organisms → cellular organisms → Bacteria → Proteobacteria	1514	Open in IMG/M
3300026142\|Ga0207698_10646279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1047	Open in IMG/M
3300027886\|Ga0209486_10975974	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300028380\|Ga0268265_12653687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	506	Open in IMG/M
3300028592\|Ga0247822_11394373	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300031170\|Ga0307498_10110603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	860	Open in IMG/M
3300031366\|Ga0307506_10175655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	770	Open in IMG/M
3300031366\|Ga0307506_10318956	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300031538\|Ga0310888_10485999	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300031548\|Ga0307408_100510805	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300031649\|Ga0307514_10371853	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300031847\|Ga0310907_10575185	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300031847\|Ga0310907_10634386	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300031858\|Ga0310892_10555738	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300031892\|Ga0310893_10024706	All Organisms → cellular organisms → Bacteria → Proteobacteria	1806	Open in IMG/M
3300031892\|Ga0310893_10507111	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	542	Open in IMG/M
3300031901\|Ga0307406_10789359	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300031939\|Ga0308174_11941148	Not Available	507	Open in IMG/M
3300031943\|Ga0310885_10733047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae	557	Open in IMG/M
3300032122\|Ga0310895_10221839	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300032126\|Ga0307415_100491749	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300032144\|Ga0315910_10270159	All Organisms → cellular organisms → Bacteria → Proteobacteria	1286	Open in IMG/M
3300032157\|Ga0315912_10077156	All Organisms → cellular organisms → Bacteria → Proteobacteria	2616	Open in IMG/M
3300032157\|Ga0315912_10107282	All Organisms → cellular organisms → Bacteria → Proteobacteria	2188	Open in IMG/M
3300032157\|Ga0315912_10404807	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300032157\|Ga0315912_10796149	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.55%
Host-Associated	Host-Associated	42.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.12%
Plants	Host-Associated → Plants	42.45%
Aquatic	Environmental → Aquatic	1.44%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.58%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.70%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.16%
Roots	Host-Associated → Plants → Roots	2.16%
Sediment	Environmental → Aquatic → Sediment	1.44%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.57%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.55%
Loam	Environmental → Terrestrial → Soil → Loam	13.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.91%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.16%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.44%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.44%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.44%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.19%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.16%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.44%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.44%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.44%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	10.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	8.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.32%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.32%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.60%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.16%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.16%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.44%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.44%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.44%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.44%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.44%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.72%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.72%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002077	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012137	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT560_2	Environmental	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014312	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300022889	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S096-311B-4	Environmental	Open in IMG/M
3300022908	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L221-509R-5	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300023069	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5	Environmental	Open in IMG/M
3300023274	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L141-409B-4	Environmental	Open in IMG/M
3300023275	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L199-509C-5	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031649	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM	Host-Associated	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_100765985	3300000891	Soil	HGRDWPLSSGRESLVLILTDARAPNDTIASSWTSLDAARVGIDIGWLAIDCAPVVGETGESRS*
JGI10216J12902_1046769791	3300000956	Soil	TFDLHDRGGRAHFRTPDGRALTLELHGSDWPLSQGRESLVLILTDGKTDSEPIASSWTSLHAARVGIDIGWLAIDCAPVVSDTGEQRS*
JGI24744J21845_100994161	3300002077	Corn, Switchgrass And Miscanthus Rhizosphere	GRARFRTPDGRALQLELHGRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0062593_1014655972	3300004114	Soil	TPDGRELQLELHGRDWPLSEGRESLVLTLSDGKADSDPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0062593_1023113331	3300004114	Soil	PDGRELQLELHGRDWPLSAGRESLVLILSDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS*
Ga0062589_1013272131	3300004156	Soil	GRELQLELHGRDWPLSEGRESLVLTLSDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0062590_1005773891	3300004157	Soil	SWTASREKSPRKLIDNVDLHDRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLSDGKADSDPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0062590_1009027031	3300004157	Soil	TKDKAPRRLIETFDLHDRGGRAHFRTPDGRALTLELHGSDWPLSQGRESLVLILTDGKTDSDPIASSWTSLHAARVGIDIGWLAIDCAPVVSDTGEQRS*
Ga0062592_1011101822	3300004480	Soil	QKEKKLERRPLDGVDLHDRGGRARFRTPDGRELQLELHGRDWPLSSGRESLVLILTDARAPNDTIASSWTSLDAARVGIDIGWLAIDCAPVVGETGESRS*
Ga0070690_1009620922	3300005330	Switchgrass Rhizosphere	VDLHDRGGRARFRTPDGRELQLELHGSDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0070670_1009638002	3300005331	Switchgrass Rhizosphere	GRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0070666_111838891	3300005335	Switchgrass Rhizosphere	HGRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0070682_1001882831	3300005337	Corn Rhizosphere	LQLELHGRDWPLSAGRESLVLILSDARASNDAIASSWTSLDAARVGIDIGWLSIDCAPVVSETGESRS*
Ga0070689_1005586481	3300005340	Switchgrass Rhizosphere	DSVDLHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILSDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS*
Ga0070689_1011037511	3300005340	Switchgrass Rhizosphere	DGRELQLELHGRDWPLSAGRESLVLILNSGKAADDPLASSWTSLDAARVGIDIGWLAVDCAPVITETGEQPG*
Ga0070687_1012842321	3300005343	Switchgrass Rhizosphere	SREKSPRKLIDNVDLHDRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLTNGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0070692_100332091	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	GISWAGDKQPRRPLESVDLHDRGGRARFRTPDGRELQLELHGRDWPLSTGRESLVLILRGAKASSDTIASSWTSLDAARVGIDIGWLAIDCAPVVSQTGEGDS*
Ga0070692_109790711	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	TLELHGRDWPLSEGRESLVLILSDGKTDSDPIASSWTSLGAARVGIDIGWLAIDCAPVVSETGEQRG*
Ga0070669_1004738911	3300005353	Switchgrass Rhizosphere	LHDRGGRARFRTPDGRTLQLELHGRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0070669_1012319611	3300005353	Switchgrass Rhizosphere	DGRNLELELHGRDWPMSAGRESLVLILNSGKAAESPLASSWTSLDAARVGIDIGWLAVDCAPVVSETGEEPS*
Ga0070673_1011966942	3300005364	Switchgrass Rhizosphere	LDSVDLHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILSDARASNDAIASSWTSLDAARVGIDIGWLSIDCAPVVSETGESRS*
Ga0070700_1001185593	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	SREKSPRKLIDNVDLHDRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLSDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0070700_1001856991	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	DKQPRRPLESVDLHDRGGRARFRTPDGRELQLELHGRDWPLSTGRESLVLILRGAKASSDTIASSWTSLDAARVGIDIGWLAIDCAPVVSQTGEGDS*
Ga0070700_1003026961	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	TPDGRALQLELHGRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0070700_1007209222	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	SCGISWAPPKEKQRRPLDSVDLHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILSDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS*
Ga0070678_1006720051	3300005456	Miscanthus Rhizosphere	EKSAPKPIDHVDLHDRGGRARFRTPDGRALQLELHGRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0070662_1015841911	3300005457	Corn Rhizosphere	GKDKSRQQLESVDLHERGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILTDARASNDTIASSWTSLDAARVGIDIGWLSIDCAPVVSETGESRS*
Ga0070662_1019241452	3300005457	Corn Rhizosphere	SCGISWAPSREKSPRKLIDNVDLHDRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLSDGKADSDPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0070684_1019706662	3300005535	Corn Rhizosphere	PQKEKRPERRALDSVDLHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILTDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS*
Ga0070672_1000573501	3300005543	Miscanthus Rhizosphere	LELHGRDWPMSAGRESLVLILNSGKAAESPLASSWTSLDAARVGIDIGWLAVDCAPVVSETGEEPS*
Ga0070672_1019398421	3300005543	Miscanthus Rhizosphere	LHDRGGRARFRTPDGRELQLELHGRDWPLSNSRESLVLILTDGKAASDSIASSWTSLDAARVGIDIGWLAIDCAPVVSETGEQKS*
Ga0070686_1013398181	3300005544	Switchgrass Rhizosphere	VDLHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILSDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS*
Ga0070665_1020695772	3300005548	Switchgrass Rhizosphere	RTPDGRELTLELHGRDWPMSEGRESLVLILSDGKTDSEPIASSWTSLGAARVGIDIGWLAIDCAPVVSETGEQRG*
Ga0070664_1021819782	3300005564	Corn Rhizosphere	RELQLELHGRDWPLSTGRESLVLMLRDGRAASDTIASSWTSLDAARVGIDIGWLTIDCAPVVPETGEAPS*
Ga0068857_1010223031	3300005577	Corn Rhizosphere	ELQLELHGRDWPLSSGRESLVLILTDARAPNDTIASSWTSLDAARVGIDIGWLAIDCAPVVGETGESRS*
Ga0068859_1004102223	3300005617	Switchgrass Rhizosphere	GDKQPRRPLESVDLHDRGGRARFRTPDGRELQLELHGRDWPLSTGRESLVLILRGAKASSDTIASSWTSLDAARVGIDIGWLAIDCAPVVSQTGEGDS*
Ga0068859_1014569592	3300005617	Switchgrass Rhizosphere	LELHGRDWPLSAGRESLVLILNSGKAADDPLASSWTSLDAARVGIDIGWLAVDCAPVITETGEQPG*
Ga0068861_1002022101	3300005719	Switchgrass Rhizosphere	PDGRELQLELHGRDWPLSAGRESLVLILNSGKAADDPLASSWTSLDAARVGIDIGWLAVDCAPVITETGEQPG*
Ga0068861_1014337021	3300005719	Switchgrass Rhizosphere	FHTPDGRELQLELHGRDWPLSEGRESLVLTLTNGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0074470_115328531	3300005836	Sediment (Intertidal)	GRARIHTPDGRELLLELHGRDWPLSEGRESLVLILTAGWAQTDPIASSWTSLGAARVGIDIGWLAIDCAPVVAESGEQHS*
Ga0068870_102217883	3300005840	Miscanthus Rhizosphere	LDSVDLHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILTDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS*
Ga0068870_111102752	3300005840	Miscanthus Rhizosphere	KDKGPRKPIETFDLHDRGGRGHFRTPDGRALTLELHGSDWPLSQGRESLVLILTDGRTDSEPIASSWTSLHAARVGIDIGWLAIDCAPVVSETGEQRS*
Ga0068863_1002360921	3300005841	Switchgrass Rhizosphere	DRGGRARFRTPDGRELQLELHGRDWPLSTGRESLVLILRGAKASSDTIASSWTSLDAARVGIDIGWLAIDCAPVVSQTGEGDS*
Ga0068860_1012894952	3300005843	Switchgrass Rhizosphere	PDGRDLQLELHGRDWPLSEGRESLVLILTAARADNEVIASSWTSLNAARVGIDIGWLAIDSAPLVSETGEQRS*
Ga0068862_1004574693	3300005844	Switchgrass Rhizosphere	RTPDGRELQLELHGRDWPLSAGRESLVLILNSGKAADDPLASSWTSLDAARVGIDIGWLAVDCAPVITETGEQPG*
Ga0068862_1009007381	3300005844	Switchgrass Rhizosphere	NVDLHDRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLSDGKADSDPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0068862_1018110192	3300005844	Switchgrass Rhizosphere	KKLERRPLDGVDLHDRGGRARFRTPDGRELQLELHGRDWPLSSGRESLVLILTDARAPNDTIASSWTSLDAARVGIDIGWLAIDCAPVVGETGESRS*
Ga0068871_1001730854	3300006358	Miscanthus Rhizosphere	TLDSVDLHDRGGRARFRTPDGRELSLELHGRDWPMSAGRESLVLTLRGASASSDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGEQHS*
Ga0068871_1006580171	3300006358	Miscanthus Rhizosphere	TVDLHDRGGRARFRTPDGRELQLELHGRDWPLSEGRESLVLILSEDGAAEEPVASSWTSLGAARVGIDIGWLAIDCAPVVSETGEQRS*
Ga0074062_124303952	3300006606	Soil	ARGKVKEQRQQLESVDLHDRGGRARFRTPDGRELQLELHGRDWPLSTGRESLVLILSGVKASGDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGEQRS*
Ga0079220_108253991	3300006806	Agricultural Soil	TFDLHDRGGRAHFRTPDGRALTLELHGSDWPLSQGRESLVLILTDGKADSEPIASSWTSLHAARVGIDIGWLAIDCAPVVSDTGEQRS*
Ga0068865_1012216521	3300006881	Miscanthus Rhizosphere	HGRDWPMSAGRESLVLILNSGKAAESPLASSWTSLDAARVGIDIGWLAVDCAPVVSETGEEPS*
Ga0074063_138789482	3300006953	Soil	TPDGRELQLELHGRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAARVGIDIGWLKVDCAPVVSETGEQRS*
Ga0079218_116727832	3300007004	Agricultural Soil	VELHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILNSGNAAESPLASSWTTLDAARVGIDIGWLAVDCAPVVTETGEEPS*
Ga0111539_122673452	3300009094	Populus Rhizosphere	MARNRSSSRRPLDSVDLHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILSDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS*
Ga0105248_104197831	3300009177	Switchgrass Rhizosphere	RELQLELHGRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAASVGIDVGWLKIDCAPLVSETGEQRS*
Ga0105248_118139551	3300009177	Switchgrass Rhizosphere	ELQLELHGRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0134124_104616961	3300010397	Terrestrial Soil	GRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAASVGIDVGWLKIDCAPLVSETGEQRS*
Ga0134127_130590592	3300010399	Terrestrial Soil	LDSVDLHDRGGRARFRTPDGRELQLELHRRDWPLSAGRESLVLILSDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS*
Ga0134122_100231001	3300010400	Terrestrial Soil	PDGRELLLELHGRDWPLSTGRESLVLILRDGKAASDSIASSWTSLDAARVGIDIGWLAIDCAPVVADNGEAPS*
Ga0134123_102522341	3300010403	Terrestrial Soil	CGISWAGDKQPRRPLESVDLHDRGGRARFRTPDGRELQLELHGRDWPLSTGRESLVLILRGAKASSDTIASSWTSLDAARVGIDIGWLAIDCAPVVSQTGEGDS*
Ga0105246_116992702	3300011119	Miscanthus Rhizosphere	DRGGRARFRTPDGRELQLELHGRDWPLSTGRESLVLILRGARASSDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGEQRS*
Ga0137346_10628062	3300012137	Soil	FRTPDGRELTLELHGRDWPLSAGRESLVLILTEGRSDSEPIASSWTSLGAARVGIDIGWLAIDCAPVVSETGEQRS*
Ga0157304_10600341	3300012882	Soil	RLIETFDLHDRGGRAHFRTPDGRALTLELHGSDWPLSQGRESLVLILTDGKTDSDPIASSWTSLHAARVGIDIGWLAIDCAPVVSDTGEQRS*
Ga0157299_103299862	3300012899	Soil	FRTPDGRELQLELHGRDWPLSAGRESLVLILSDARASNDTIASSRTSLDAARVGIDIGWLAIDCAPVVSETGESRS*
Ga0157291_101852491	3300012902	Soil	DRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLSDGKADSDPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0157296_100084101	3300012905	Soil	SREKSPRKLIDNVDLHDRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLSDGKADSDPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0157310_102518671	3300012916	Soil	GISWASSREKSPAPIDHVDLHDRGGRARFRTPDGRTLQLELHGRDWPLSAGRESLVLILTDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS*
Ga0157375_121189271	3300013308	Miscanthus Rhizosphere	RFRTPDGRELQLELHGRDWPLSAGRESLVLILTDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS*
Ga0075345_11935032	3300014312	Natural And Restored Wetlands	HGRDWPLSEGRESLVLILTDGKAEGETIASSWTSQGAARVGIDIGWLAIDCAPVVSETGEQRS*
Ga0157380_112435701	3300014326	Switchgrass Rhizosphere	LHGRDWPLSEGRESLVLTLSDGKADSDPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0157380_115003371	3300014326	Switchgrass Rhizosphere	SVDLHDRGGRARFRTPDGRELQLELHGRDWPLSTGRESLVLILRDARAANDSIASSWTSLDAARVGIDIGWLAIDCAPVVSETGEEPS*
Ga0157377_103350423	3300014745	Miscanthus Rhizosphere	QLELHGRDWPLSEGRESLVLTLSDGKADSDPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS*
Ga0173480_107908672	3300015200	Soil	PPKEKQRRPLDSVDLHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILSDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS*
Ga0173480_109434241	3300015200	Soil	ARFRTPDGRELQLELHGRDWPLSAGRESLVLILNSGKAADDPLASSWTSLDAARVGIDIGWLAVDCAPVITETGEQPG*
Ga0173478_104015592	3300015201	Soil	DGRELQLELHGRDWPLSSGRESLVLILTDARAPNDTIASSWTSLDAARVGIDIGWLAIDCAPVVGETGESRS*
Ga0132258_105387494	3300015371	Arabidopsis Rhizosphere	FSCGISWAPPGEHGKRRPLDSVELHDRGGRARFRTPDGRELQLELHGRDWPMSAGRESLVLILNSGNVADSPLASSWTSLDAARVGIDIGWLVVDCAPVVSETGEEPS*
Ga0190266_106497492	3300017965	Soil	DRGGRARFRTPDGRALQLALHGRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0190265_127632341	3300018422	Soil	RFRTPDGRELKLELHGRDWPLSEGRESLVLTLSDGKTDSEPIASSWTSLGAARVGIDIGWLAIDCAPVVSDTGEQRS
Ga0190272_129408021	3300018429	Soil	ATSRDKGARKLIDNVDLHDRGGRARFRTPDGRELQLALHGRDWPLSEGRESLVLIFTAGKASSETIASSWTSLGAARVGIDIGWLAIDCAPVVSETGEKSS
Ga0190270_103446163	3300018469	Soil	VDLHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILTDARAASDDIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS
Ga0173479_108500532	3300019362	Soil	RELQLELHGRDWPLSAGRESLVLILSDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS
Ga0193716_11761511	3300020061	Soil	ENVDLHDRGGRARFRTPDGRELQLELHGRDWPLSERRESLVLILTDGKADSEAIASSWTSLDAARVGINIGWLAIDCSPVVSETGEQRS
Ga0247792_11248831	3300022880	Soil	RTPDGRALTLELHGSDWPLSQGRESLVLILTDGKTDSDPIASSWTSLHAARVGIDIGWLAIDCAPVVSDTGEQRS
Ga0247785_10223771	3300022889	Soil	PDGRELQLELHGRDWPLSEGRESLVLTLSDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0247779_10789121	3300022908	Plant Litter	KSPRKLIDNVDLHDRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLSDGKADSDPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0247797_10721622	3300023057	Soil	RFHTPDGRELQLELHGRDWPLSEGRESLVLTLSDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0247751_10516961	3300023069	Soil	SVDLHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILSDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS
Ga0247763_12269532	3300023274	Plant Litter	EFLLELHGRDWPLSEGRESLLLMLTDPGTDETIGSSWTSLGAARVGMDLGWMAIDCAPVVSETGEQRS
Ga0247776_102702922	3300023275	Plant Litter	VHVDSVDLHDRGGRARFRTPDGRELQLELHGRDWPLSEGRESLVLILTSARAGNETIASSWTSLNAARVGIDIGWLAIDCAPVVSETGEQRS
Ga0247794_101267131	3300024055	Soil	DLHDRGGRARFRTPDGRELQLELHGRDWPLSSGRESLVLILTDARAPNDTIASSWTSLDAARVGIDIGWVTIDCAPVVSDTGEEPS
Ga0247794_101781412	3300024055	Soil	TPDGRELQLELHGRDWPLSAGRESLVLILTDAHASSDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS
Ga0207685_103294901	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	PSREKSPRKLIDNVDLHDRGGRARFRTPDGRELQLELHGRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAARVGIDIGWLKVDCAPVVSETGEQRS
Ga0207681_103500611	3300025923	Switchgrass Rhizosphere	ARFHTPDGRELQLELHGRDWPLSEGRESLVLTLTNGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0207681_109971941	3300025923	Switchgrass Rhizosphere	LFSCGISWAPEKGKRRALDSVELHDRGGRARFRTPDGRNLELELHGRDWPMSAGRESLVLILNSGKAAESPLASSWTSLDAARVGIDIGWLAVDCAPVVSETGEEPS
Ga0207650_110106571	3300025925	Switchgrass Rhizosphere	SWAPQKEKKAGRRALDSVDLHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILTDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS
Ga0207650_111299401	3300025925	Switchgrass Rhizosphere	HGRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0207670_100147056	3300025936	Switchgrass Rhizosphere	ARFRTPDGRELQLELHGRDWPLSTGRESLVLILRGAKASSDTIASSWTSLDAARVGIDIGWLAIDCAPVVSQTGEGDS
Ga0207704_103156561	3300025938	Miscanthus Rhizosphere	SPRKLIDNVDLHDRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0207691_100275051	3300025940	Miscanthus Rhizosphere	DLHDRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLSDGKADSDPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0207691_105711903	3300025940	Miscanthus Rhizosphere	DLHDRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLSDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0207651_110415881	3300025960	Switchgrass Rhizosphere	RRALDSVELHDRGGRARFRTPDGRNLELELHGRDWPMSAGRESLVLILNSGKAAESPLASSWTSLDAARVGIDIGWLAVDCAPVVSETGEEPS
Ga0207651_120916582	3300025960	Switchgrass Rhizosphere	LDSVDLHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILSDARASNDAIASSWTSLDAARVGIDIGWLSIDCAPVVSETGESRS
Ga0207708_101458781	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	ARLFSCGISWTASREKSPRKLIDNVDLHDRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLSDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0207708_101591743	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VNDAAPVQIRERVGEIAGRPLESVDLHDRGGRARFRTPDGRELQLELHGRDWPLSTGRESLVLILRGAKASSDTIASSWTSLDAARVGIDIGWLAIDCAPVVSQTGEGDS
Ga0207708_107882431	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	FSCGISWAPPKEKQRRPLDSVDLHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILSDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS
Ga0207708_114405041	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	RFRTPDGRALQLELHGRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0207641_108122541	3300026088	Switchgrass Rhizosphere	DRGGRARFRTPDGRELQLELHGRDWPLSTGRESLVLILRGAKASSDTIASSWTSLDAARVGIDIGWLAIDCAPVVSQTGEGDS
Ga0207648_105968783	3300026089	Miscanthus Rhizosphere	WSSQKEKKLERRPLDGVDLHDRGGRARFRTPDGRELQLELHGRDWPLSSGRESLVLILTDARAPNDTIASSWTSLDAARVGIDIGWLAIDCAPVVGETGESRS
Ga0207676_100312681	3300026095	Switchgrass Rhizosphere	TPDGRELQLELHGRDWPLSTGRESLVLILRGAKASSDTIASSWTSLDAARVGIDIGWLAIDCAPVVSQTGEGDS
Ga0207676_125462752	3300026095	Switchgrass Rhizosphere	ELHGSDWPLSQGRESLVLILTDGRTDSEPIASSWTSLHAARVGIDIGWLAIDCAPVVSETGEQRS
Ga0207675_1012542662	3300026118	Switchgrass Rhizosphere	ISWAPSREKSPRKLIDNVDLHDRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLTNGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0207675_1021186682	3300026118	Switchgrass Rhizosphere	FRTPDGRELLLELHGRDWPLSTGRESLVLILRDGKAASDSIASSWTSLDAARVGIDIGWLAIDCAPVVADNGEAPS
Ga0207683_102835043	3300026121	Miscanthus Rhizosphere	KLIDNVDLHDRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLTDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0207698_106462791	3300026142	Corn Rhizosphere	GGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILSDARASNDAIASSWTSLDAARVGIDIGWLSIDCAPVVSETGESRS
Ga0209486_109759741	3300027886	Agricultural Soil	KSSRRALDDVELHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILNSGNAAESPLASSWTTLDAARVGIDIGWLAVDCAPVVTETGEEPS
Ga0268265_126536871	3300028380	Switchgrass Rhizosphere	WTASREKSPRKLIDNVDLHDRGGRARFHTPDGRELQLELHGRDWPLSEGRESLVLTLSDGKADSDPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0247822_113943731	3300028592	Soil	LQLELHGRDWPLSAGRESLVLILSDARASNDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGESRS
Ga0307498_101106033	3300031170	Soil	ESVDLHDRGGRARFRTPDGRELQLELHGRDWPLSTGRESLVLILSGVKASSDPIASSWTSLDAARVGIDIGWLAIDCAPVVSETGEQRS
Ga0307506_101756551	3300031366	Soil	FSCGVSWAASKDKSPRKLIENVDLHDRGGRVRFHTPDGRELQLELHGRDWPLSEGRESLVLTLTDGKSDSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0307506_103189562	3300031366	Soil	DRGGRGHFRTPDGRALTLELHGSDWPLSEGRESLVLILTDGKADSEPIASSWTSLGAARVGIDIGWLAIDCAPVVSETGEERS
Ga0310888_104859991	3300031538	Soil	LELHGRDWPLSAGRESLVLILNSGKAADDPLASSWTSLDAARVGIDIGWLAVDCAPVITETGEQPG
Ga0307408_1005108053	3300031548	Rhizosphere	CGISWAPSRSHERRRTLEGVDLHDRGGRVRFKTPDGRQLLLELHGRDWPLSEGRESLVLILTDPKADETIGSSWTSLGAARVGLDVGWLAIDCAPVVSETGEQRS
Ga0307514_103718532	3300031649	Ectomycorrhiza	GRGHFRTPDGRALTLELHGSDWPLSEGRESLVLILTDGKTDSEPIASSWTSLNAARVGIDIGWLAIDCAPVVSDTGEQRS
Ga0310907_105751851	3300031847	Soil	LELHGSDWPLSQGRESLVLILTDGKTDSEPIASSWTSLHAARVGIDIGWLAIDCAPVVSETGEQRS
Ga0310907_106343861	3300031847	Soil	ELQLELHGRDWPLSEGRESLVLTLSDGKADSEPIASSWTSLGAARVGIDIGWLKIDCAPVVSETGEQRS
Ga0310892_105557381	3300031858	Soil	DGRALTLELHGSDWPLSQGRESLVLILTDGKTDSEPIASSWTSLHAARVGIDIGWLAIDCAPVVSETGEQRS
Ga0310893_100247063	3300031892	Soil	KRKLDNLELHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILNSGKAADDPLASSWTSLDAARVGIDIGWLAVDCAPVITETGEQPG
Ga0310893_105071111	3300031892	Soil	DRGGRAHFRTPDGRALTLELHGSDWPLSQGRESLVLILSDGKTDSEPIASSWTSLHAARVGIDIGWLAIDCAPVVSETGEQRS
Ga0307406_107893591	3300031901	Rhizosphere	ELHGRDWPLSEGRESLVLILTDPRTDEAIGSSWTSLGAARVGLDVGWLAIDCAPVVSETGEQRS
Ga0308174_119411482	3300031939	Soil	DLHDRGGRARFRTPDGRDLTLELHGRDWPLSEGRESLVLVLSDGKTDSDPIASSWTSLGAARVGIDIGWLAIDCAPVVSETGEQRG
Ga0310885_107330471	3300031943	Soil	LFSCDISWSTPRAKGPRKPLTSVDLHDRGGRARFRTPDGKELHLALHGRDLPLSEGRESLVLILSDDKASGDPIASSWTSLGAARVGIDIGWLAIDCAPVVSETGEERS
Ga0310895_102218391	3300032122	Soil	RRTLESVDLHDRGGRAGFRPPDGRELLLELHGRDWPLSTGRESLVLILRDARAANDSIASSWTSLDAARVGIDIGWLAIDCAPVVSETGEEPS
Ga0307415_1004917491	3300032126	Rhizosphere	DGRELLLELHGRDWPLSEGRESLVLILTDPRTDEAIGSSWTSLGAARVGLDVGWLAIDCAPVVSETGEQRS
Ga0315910_102701593	3300032144	Soil	QGSRRALNGVELHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILNSGEAAEIPLASSWTSLDAARVGIDIGWLAVDCAPVVTETGEEPS
Ga0315912_100771564	3300032157	Soil	DGRELELELHGRDWPLSTGRESLVLILTEGRAASDPIASSWTSLDAARVGIDIGWLAVDCAPMVKESGEQPS
Ga0315912_101072824	3300032157	Soil	ALETVELHDRGGRARFRTPDGRELQLELHGRDWPLSTGRESLVLILTADRAVGEPIASSWTSLDAARVGIDIGWLAVDCAPLVTDSGEQPS
Ga0315912_104048073	3300032157	Soil	ENVDLHDRGGRARFRTPDGRELQLELHGRDWPLSAGRESLVLILSAGRTGGDPIASSWTSLDAARVGIDIGWLAVDCAPVVTETGEQPS
Ga0315912_107961491	3300032157	Soil	SVDLHDRGGRARIRTPDGLDLLLELHGRDWPLSTGRESLVLILRDARKSSDTIASSWTSLDAARVGIDIGWLAIDCAPVVSETGEQKS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054908

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences