NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F054378

Metagenome / Metatranscriptome Family F054378

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F054378
Family Type Metagenome / Metatranscriptome
Number of Sequences 140
Average Sequence Length 40 residues
Representative Sequence VVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Number of Associated Samples 130
Number of Associated Scaffolds 140

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 98.57 %
Associated GOLD sequencing projects 124
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (55.714 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(36.429 % of family members)
Environment Ontology (ENVO) Unclassified
(30.714 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(42.857 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 29.23%    β-sheet: 10.77%    Coil/Unstructured: 60.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.35
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 140 Family Scaffolds
PF03979Sigma70_r1_1 37.86
PF00140Sigma70_r1_2 15.71
PF04542Sigma70_r2 15.71
PF04545Sigma70_r4 4.29
PF02634FdhD-NarQ 1.43

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 140 Family Scaffolds
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 69.29
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 15.71
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 15.71
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 15.71
COG1526Formate dehydrogenase assembly factor FdhD, a sulfurtransferaseEnergy production and conversion [C] 1.43


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms55.71 %
UnclassifiedrootN/A44.29 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001545|JGI12630J15595_10119790All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales520Open in IMG/M
3300001661|JGI12053J15887_10627193Not Available511Open in IMG/M
3300003505|JGIcombinedJ51221_10093835All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1188Open in IMG/M
3300003505|JGIcombinedJ51221_10369112All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia583Open in IMG/M
3300003659|JGI25404J52841_10008157All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2225Open in IMG/M
3300004618|Ga0068963_1039665All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales503Open in IMG/M
3300005104|Ga0066818_1023650All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia526Open in IMG/M
3300005332|Ga0066388_108199886All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia521Open in IMG/M
3300005445|Ga0070708_100264707All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis1616Open in IMG/M
3300005555|Ga0066692_10721641Not Available617Open in IMG/M
3300005591|Ga0070761_10743198All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia616Open in IMG/M
3300005921|Ga0070766_10671981All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia699Open in IMG/M
3300006162|Ga0075030_100900697All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia697Open in IMG/M
3300006163|Ga0070715_10516198Not Available687Open in IMG/M
3300006173|Ga0070716_100931297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia682Open in IMG/M
3300006354|Ga0075021_10214464All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae1178Open in IMG/M
3300006871|Ga0075434_101248523All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales754Open in IMG/M
3300009090|Ga0099827_10109616All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2207Open in IMG/M
3300009093|Ga0105240_12047886Not Available594Open in IMG/M
3300009524|Ga0116225_1264135All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales771Open in IMG/M
3300009525|Ga0116220_10300164All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales707Open in IMG/M
3300009553|Ga0105249_11619279Not Available720Open in IMG/M
3300009698|Ga0116216_10659922All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales629Open in IMG/M
3300010105|Ga0127470_1099510Not Available554Open in IMG/M
3300010112|Ga0127458_1010397Not Available561Open in IMG/M
3300010118|Ga0127465_1137199Not Available634Open in IMG/M
3300010119|Ga0127452_1153778All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales504Open in IMG/M
3300010146|Ga0126320_1144229Not Available667Open in IMG/M
3300010343|Ga0074044_10530169All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales769Open in IMG/M
3300010366|Ga0126379_11171025All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales875Open in IMG/M
3300011066|Ga0138524_1070521All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales680Open in IMG/M
3300011080|Ga0138568_1041422All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales575Open in IMG/M
3300011087|Ga0138570_1102889All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales750Open in IMG/M
3300011120|Ga0150983_13973716All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1616Open in IMG/M
3300011120|Ga0150983_13988188All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales757Open in IMG/M
3300011120|Ga0150983_15155462All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales762Open in IMG/M
3300012201|Ga0137365_10588612All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales816Open in IMG/M
3300012210|Ga0137378_10559607All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1052Open in IMG/M
3300012364|Ga0134027_1075558All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales813Open in IMG/M
3300012379|Ga0134058_1076118Not Available635Open in IMG/M
3300012380|Ga0134047_1210931All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales754Open in IMG/M
3300012392|Ga0134043_1140462Not Available650Open in IMG/M
3300012406|Ga0134053_1196853Not Available567Open in IMG/M
3300012409|Ga0134045_1342390All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales777Open in IMG/M
3300012500|Ga0157314_1039217Not Available565Open in IMG/M
3300014501|Ga0182024_11323779All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales834Open in IMG/M
3300017942|Ga0187808_10138185Not Available1070Open in IMG/M
3300017995|Ga0187816_10113451All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1166Open in IMG/M
3300018090|Ga0187770_11175819Not Available620Open in IMG/M
3300019260|Ga0181506_1033212Not Available520Open in IMG/M
3300019279|Ga0184642_1080257All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1615Open in IMG/M
3300020069|Ga0197907_10197414All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1326Open in IMG/M
3300020076|Ga0206355_1321051All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1258Open in IMG/M
3300021151|Ga0179584_1330480All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales839Open in IMG/M
3300021445|Ga0182009_10588920Not Available594Open in IMG/M
3300021474|Ga0210390_10936021All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales711Open in IMG/M
3300021929|Ga0213845_1195941Not Available543Open in IMG/M
3300022499|Ga0242641_1044626Not Available523Open in IMG/M
3300022507|Ga0222729_1057152All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales552Open in IMG/M
3300022522|Ga0242659_1005624All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1598Open in IMG/M
3300022527|Ga0242664_1079280All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales646Open in IMG/M
3300022709|Ga0222756_1010822Not Available1043Open in IMG/M
3300022722|Ga0242657_1067621Not Available822Open in IMG/M
3300024271|Ga0224564_1040695Not Available893Open in IMG/M
3300024283|Ga0247670_1054612Not Available721Open in IMG/M
3300024325|Ga0247678_1047125Not Available693Open in IMG/M
3300025633|Ga0208480_1141540Not Available549Open in IMG/M
3300025972|Ga0207668_11548837Not Available598Open in IMG/M
3300026327|Ga0209266_1257259Not Available559Open in IMG/M
3300027174|Ga0207948_1032675All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales624Open in IMG/M
3300027812|Ga0209656_10178711Not Available1043Open in IMG/M
3300027894|Ga0209068_10605643Not Available638Open in IMG/M
3300027903|Ga0209488_10538566All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales853Open in IMG/M
3300027915|Ga0209069_10453196All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales713Open in IMG/M
3300028138|Ga0247684_1040239Not Available750Open in IMG/M
3300028145|Ga0247663_1082909Not Available572Open in IMG/M
3300028717|Ga0307298_10219569Not Available562Open in IMG/M
3300029944|Ga0311352_10158177All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1956Open in IMG/M
3300029944|Ga0311352_11490934Not Available506Open in IMG/M
3300030528|Ga0210277_10881961Not Available636Open in IMG/M
3300030536|Ga0210266_1191398Not Available608Open in IMG/M
3300030539|Ga0210281_1177131All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales561Open in IMG/M
3300030573|Ga0210272_1037397All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales888Open in IMG/M
3300030573|Ga0210272_1295359All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales520Open in IMG/M
3300030575|Ga0210288_1196269Not Available566Open in IMG/M
3300030578|Ga0210275_10032825Not Available1028Open in IMG/M
3300030578|Ga0210275_10372825All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales517Open in IMG/M
3300030583|Ga0210262_1092243Not Available710Open in IMG/M
3300030586|Ga0265393_1107218All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales641Open in IMG/M
3300030588|Ga0210283_1060913Not Available538Open in IMG/M
3300030594|Ga0210280_1029907All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales831Open in IMG/M
3300030596|Ga0210278_1048126All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales805Open in IMG/M
3300030597|Ga0210286_1126989Not Available702Open in IMG/M
3300030623|Ga0265392_1147915Not Available603Open in IMG/M
3300030625|Ga0210259_11778336Not Available669Open in IMG/M
3300030626|Ga0210291_10700526Not Available892Open in IMG/M
3300030627|Ga0210269_10101204All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales804Open in IMG/M
3300030627|Ga0210269_10271685All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales581Open in IMG/M
3300030627|Ga0210269_10340469Not Available533Open in IMG/M
3300030629|Ga0210268_1097760All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales804Open in IMG/M
3300030632|Ga0210250_10911303All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales552Open in IMG/M
3300030707|Ga0310038_10274402All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales770Open in IMG/M
3300030730|Ga0307482_1033542All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1161Open in IMG/M
3300030738|Ga0265462_10092784All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1298Open in IMG/M
3300030741|Ga0265459_11699046All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales736Open in IMG/M
3300030743|Ga0265461_10240597Not Available1178Open in IMG/M
3300030743|Ga0265461_10538232All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium979Open in IMG/M
3300030743|Ga0265461_11566740Not Available718Open in IMG/M
3300030760|Ga0265762_1086084All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales679Open in IMG/M
3300030863|Ga0265766_1007669Not Available729Open in IMG/M
3300030963|Ga0265768_103777All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales827Open in IMG/M
3300030967|Ga0075399_11488935Not Available623Open in IMG/M
3300031057|Ga0170834_111114432All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis1558Open in IMG/M
3300031123|Ga0308195_1048936Not Available608Open in IMG/M
3300031231|Ga0170824_103590392All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales708Open in IMG/M
3300031474|Ga0170818_107339892All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales829Open in IMG/M
3300031708|Ga0310686_112787332All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales690Open in IMG/M
3300031713|Ga0318496_10421893All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales737Open in IMG/M
3300031715|Ga0307476_10970911Not Available626Open in IMG/M
3300031747|Ga0318502_10195748All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1168Open in IMG/M
3300031769|Ga0318526_10239980All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales741Open in IMG/M
3300031779|Ga0318566_10329609All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales754Open in IMG/M
3300031780|Ga0318508_1259079All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales500Open in IMG/M
3300031792|Ga0318529_10300396All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales747Open in IMG/M
3300031798|Ga0318523_10196546Not Available1007Open in IMG/M
3300031866|Ga0316049_121065All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales530Open in IMG/M
3300031891|Ga0316039_119656Not Available505Open in IMG/M
3300031896|Ga0318551_10191665Not Available1128Open in IMG/M
3300031939|Ga0308174_11767470Not Available531Open in IMG/M
3300031942|Ga0310916_10497119Not Available1039Open in IMG/M
3300031981|Ga0318531_10105449All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1244Open in IMG/M
3300032008|Ga0318562_10243307Not Available1044Open in IMG/M
3300032009|Ga0318563_10352394All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales796Open in IMG/M
3300032076|Ga0306924_10674125Not Available1163Open in IMG/M
3300032119|Ga0316051_1004367Not Available1014Open in IMG/M
3300032515|Ga0348332_11033000Not Available1266Open in IMG/M
3300032829|Ga0335070_11855281Not Available544Open in IMG/M
3300033004|Ga0335084_12120971Not Available546Open in IMG/M
3300033550|Ga0247829_11820919Not Available502Open in IMG/M
3300034817|Ga0373948_0045972All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales926Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil36.43%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.14%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil7.14%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil5.71%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.71%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.57%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.86%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.14%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.14%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.43%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.43%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.43%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.43%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.43%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.43%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.43%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.43%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.43%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.71%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds0.71%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.71%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.71%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.71%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.71%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.71%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.71%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.71%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.71%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.71%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.71%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.71%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.71%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.71%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.71%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.71%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.71%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.71%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300003659Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300004618Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005104Soil and rhizosphere microbial communities from Laval, Canada - mgHACEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009524Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaGEnvironmentalOpen in IMG/M
3300009525Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaGEnvironmentalOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300010105Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010112Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010118Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_16_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010119Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010146Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300011066Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 3 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011080Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 53 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011087Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012364Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_0_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012379Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012380Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012392Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012406Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012409Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012500Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610Host-AssociatedOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300019260Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019279Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020069Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020076Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3)EnvironmentalOpen in IMG/M
3300021151Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021445Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaGEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021929Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - DR:C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022499Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022507Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022522Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022527Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022709Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022722Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024271Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5EnvironmentalOpen in IMG/M
3300024283Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11EnvironmentalOpen in IMG/M
3300024325Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19EnvironmentalOpen in IMG/M
3300025633Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026327Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)EnvironmentalOpen in IMG/M
3300027174Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300028138Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25EnvironmentalOpen in IMG/M
3300028145Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK04EnvironmentalOpen in IMG/M
3300028717Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158EnvironmentalOpen in IMG/M
3300029944II_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030528Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO084SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030536Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE043SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030539Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO151-VCO111SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030573Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO143-VCO036SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030575Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE050SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030578Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO105-VCO054SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030583Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO145-ARE023SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030586Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE041SO (Eukaryote Community Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300030588Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO740-VDE011SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030594Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO141-VCO089SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030596Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO085SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030597Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE046SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030623Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE043SO (Eukaryote Community Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300030625Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO122-ANR120SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030626Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE110SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030627Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE095SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030629Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE093SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030632Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO132-ANR004SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030707Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)EnvironmentalOpen in IMG/M
3300030730Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030738Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assemblyEnvironmentalOpen in IMG/M
3300030741Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assemblyEnvironmentalOpen in IMG/M
3300030743Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assemblyEnvironmentalOpen in IMG/M
3300030760Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030863Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030963Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030967Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 Emin (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031123Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031779Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22EnvironmentalOpen in IMG/M
3300031780Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21EnvironmentalOpen in IMG/M
3300031792Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031866Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSU5 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300031891Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLA3 metaT (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032119Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSE5 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300034817Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12630J15595_1011979013300001545Forest SoilLPRYAAPSRVVMVDAVPMLPTGKHDIVRLRQELLRREQTGAESVT*
JGI12053J15887_1062719323300001661Forest SoilRYAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVNY*
JGIcombinedJ51221_1009383513300003505Forest SoilLPRYAAPSRVVMVDAVPMLPSGKHDLARLRRELLPREQTEAENVTY*
JGIcombinedJ51221_1036911223300003505Forest SoilPRYAAPSRVVMVDAVPMLPSGKHDLARLRRELLWREQSEAENVTY*
JGI25404J52841_1000815733300003659Tabebuia Heterophylla RhizosphereLPRYAIPSRVVMVDAVPMLPSGKYDLVRLRQELLRREQTEAESVTY*
Ga0068963_103966523300004618Peatlands SoilRLPRYAAPSRVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAENVTY*
Ga0066818_102365023300005104SoilPRYAIPSRVVMVGAVPMLPSGKHDIVRLRQELLRREQTEAESVIY*
Ga0066388_10819988613300005332Tropical Forest SoilERLPRYAIPSRVVMIDAVPMLPSGKHDTVRLRRELLRREQTEAESVNY*
Ga0070708_10026470713300005445Corn, Switchgrass And Miscanthus RhizosphereSRVVMVDAVPMLPSGKHDIVRLRQELLRREQTEVESVIY*
Ga0066692_1072164123300005555SoilMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY*
Ga0070761_1074319823300005591SoilPSRVVIVDAVPMLPSGKHDIARLKLELLRREQTEAENVS*
Ga0070766_1067198113300005921SoilAPSRVVIVDAVPMLPSGKHDIARLKLELLRREQTAAENVS*
Ga0075030_10090069723300006162WatershedsAPSRVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAENVT*
Ga0070715_1051619813300006163Corn, Switchgrass And Miscanthus RhizosphereVVMVDAVPMLPSGKHDIVRLRRELLRREQTEAESVT*
Ga0070716_10093129723300006173Corn, Switchgrass And Miscanthus RhizosphereAAPSRVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAENVT*
Ga0075021_1021446413300006354WatershedsLELLRLHVRQRLPYYAAPSKIVMVDAVPMLPSGKHDLARLRRELLRREQTAAENVTY*
Ga0075434_10124852313300006871Populus RhizosphereVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY*
Ga0099827_1010961613300009090Vadose Zone SoilSRVVTVDACPMLPSGKHDIVRLRLELLRREQTEAENVIL*
Ga0105240_1204788613300009093Corn RhizosphereSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY*
Ga0116225_126413523300009524Peatlands SoilVDAVPMLPSGKHDLARLRRELLRREQTEAENVSN*
Ga0116220_1030016423300009525Peatlands SoilVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAENVT*
Ga0105249_1161927923300009553Switchgrass RhizospherePRYAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY*
Ga0116216_1065992213300009698Peatlands SoilRLPRYAAPSRVVMVDAVPMLPSGKHDLARLRRELPRREQTEAENVTN*
Ga0127470_109951023300010105Grasslands SoilVDAVPMLPSGKYDIVRLRQELLRREQTKAESVIY*
Ga0127458_101039713300010112Grasslands SoilVEAVPMLPSGKHDIVRLRQELLRREQTEAESVTN*
Ga0127465_113719923300010118Grasslands SoilVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY*
Ga0127452_115377813300010119Grasslands SoilVDAVPMLLSGKHDIVRLRQELLRREQTEAESVTN*
Ga0126320_114422913300010146SoilTVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY*
Ga0074044_1053016923300010343Bog Forest SoilLLSMPVRARLPRYAPPSRVVMVDAVPMLLSGKHDIVRLRQELLRREQTEAENVT*
Ga0126379_1117102513300010366Tropical Forest SoilRLPRYAAPSRVVMVDAVPLLPSGKHDLARLRRELLRREQTESESVTN*
Ga0138524_107052123300011066Peatlands SoilVFVDAVPLLPSGKQDIAGLRRELLRREQTEAESVTY*
Ga0138568_104142223300011080Peatlands SoilFVDAIPLLPSGKHDIAGLRRELLRREQTEAESVSY*
Ga0138570_110288923300011087Peatlands SoilFVDAVPLLPSGKQDIAGLRRELLRREQTEAESVTY*
Ga0150983_1397371623300011120Forest SoilVVDAVPMLPSGKHDIARLKLELLRREQTEVENVS*
Ga0150983_1398818823300011120Forest SoilVDAIPMLPSGKHDIARLRQELLRREQTEAENVNY*
Ga0150983_1515546223300011120Forest SoilVEVDAIPMLPSGKHDIARLRQELLRREQTEAENVNY*
Ga0137365_1058861223300012201Vadose Zone SoilVMVGAVPMLPSGKHDIVRLRQELLRREQTEAESVTY*
Ga0137378_1055960723300012210Vadose Zone SoilVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVT*
Ga0134027_107555823300012364Grasslands SoilVDAVPMLPSGKYDIVWLRQELLRREQTEAESVTY*
Ga0134058_107611823300012379Grasslands SoilVDAVPMLPSGKHDIVRLRQELLRREQTEAESGTY*
Ga0134047_121093123300012380Grasslands SoilVDSVPMLPSGKHDIVRLRLELLRREQTEAESVIY*
Ga0134043_114046223300012392Grasslands SoilVDAVPMLLSGKHDIVRLRQELLRREQTEAESVTY*
Ga0134053_119685323300012406Grasslands SoilVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVIY*
Ga0134045_134239023300012409Grasslands SoilVMVDAVPMLPSGKHDIVRLRQELLRREQTEAASVIY*
Ga0157314_103921713300012500Arabidopsis RhizosphereRLPRYAIPSRVVMVDAVPMLPSGKHDIVRLRRELLRREQTEAENVT*
Ga0182024_1132377913300014501PermafrostIVDAVPMLPSGKHDIARLKLELLRREQTEAENVT*
Ga0187808_1013818513300017942Freshwater SedimentLPRYAAPGRVVMVDAVPMLPSGKHDLARLRRELLRREQTEAESVTNYCPDNVPR
Ga0187816_1011345123300017995Freshwater SedimentLPRYAAPSKMVVVDAIPMLPSGKHDIAQLRRELLRREQTGA
Ga0187770_1117581923300018090Tropical PeatlandPRYAAPSKVVMVDAVPMLPSGKHDIVRLRRELLRREQTEAESVS
Ga0181506_103321213300019260PeatlandRVVIVDDVPVLPSGKHDIARLKLELLPREQTEAENVTY
Ga0184642_108025713300019279Groundwater SedimentVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY
Ga0197907_1019741413300020069Corn, Switchgrass And Miscanthus RhizosphereVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY
Ga0206355_132105123300020076Corn, Switchgrass And Miscanthus RhizosphereMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY
Ga0179584_133048013300021151Vadose Zone SoilRLPRYAAPSRVVMVDAVPMLSSGKHDIVRLRQELLRREQTEAESVIY
Ga0182009_1058892023300021445SoilERLPRYAIPRRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY
Ga0210390_1093602123300021474SoilRVVEVDVIPMLPSGKHDIARLRLELLQREQTEAENVNY
Ga0213845_119594113300021929WatershedsMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0242641_104462613300022499SoilPRYASPSKIVMVDAVPMLSSGKHDIARLKLELLRREQNEAGSVS
Ga0222729_105715223300022507SoilVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0242659_100562423300022522SoilFVDAVPLLPSGKHDIAGLRRELLRREQTEAESVTY
Ga0242664_107928013300022527SoilRLPRYAAPSRIVMIDAVPMLPSGKHDLARLRRELLRREQSEAESVTN
Ga0222756_101082213300022709SoilLPRYAAPSRVVFVDAVPLLPSGKHDIAGLRRELLRREQTEAESVTY
Ga0242657_106762113300022722SoilRLPRYAAPSRVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0224564_104069513300024271SoilVMVDAVPMLPSGKHDIVRLRQELLRREQIEAENVT
Ga0247670_105461223300024283SoilYAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY
Ga0247678_104712513300024325SoilVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY
Ga0208480_114154013300025633Arctic Peat SoilVKERLPRYASPSRVVVVDAVPLLPSGKYDIARLKLELLRREQTEAENVS
Ga0207668_1154883713300025972Switchgrass RhizosphereYAIPSRVVMVDAVPMLPSGKYDIARLRQELLRREQTEAESVTY
Ga0209266_125725923300026327SoilVRERLPRYAIPSRVVMVDAVPMLLSGKHDIVRLRQELLRREQTEAESVTN
Ga0207948_103267523300027174Forest SoilRYAAPSRVVMVDAVPMLPSGKHDLARLRRELLQREQSEAESVTY
Ga0209656_1017871123300027812Bog Forest SoilAPSKIVMVDAVPMLPSGKHDLARLRRELLRREQTAAENVNY
Ga0209068_1060564323300027894WatershedsYAIPSRVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0209488_1053856613300027903Vadose Zone SoilASRVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVIY
Ga0209069_1045319623300027915WatershedsVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAENVT
Ga0247684_104023923300028138SoilPRYAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY
Ga0247663_108290923300028145SoilLPRYAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY
Ga0307298_1021956913300028717SoilRVVMVDAVPMLPSGKQDTVRLRQELLRREQTEAESVIY
Ga0311352_1015817713300029944PalsaVVEAVPMLSSGKHDLPRLRRELLRREQTEAENVNY
Ga0311352_1149093413300029944PalsaASPSRVVIVDAVPMLPSGKHDIARLKLELLRREQTEAENVT
Ga0210277_1088196113300030528SoilVVIIDAVPMLPSGKHDIVRLRQELLRREQTEAENVT
Ga0210266_119139823300030536SoilVVIVDAVPMLPSGKHDIARLKLELLLREQTEAENVS
Ga0210281_117713113300030539SoilIVMIDAVPMLPSGKHDLARLRRELLRREQSEAESVTY
Ga0210272_103739713300030573SoilVVIVDAVPMLPSGKHDIARLKLELLRREQTEAENVT
Ga0210272_129535913300030573SoilNRVVEVDAIPMLPSGKHDIARLRQELLQREQTEAENVTY
Ga0210288_119626913300030575SoilLRERLPRYAAPSRVVVVDAVPMLPSGKHDITRLKLDLLRREQTEAENVT
Ga0210275_1003282513300030578SoilVVEVDAIPMLPSGKHDIARLRLELLRREQTEAENVNY
Ga0210275_1037282523300030578SoilVVMVGAVPMLPSGKHDLVLLKRELLRREQSAAENVTN
Ga0210262_109224323300030583SoilQRLPRYAAPSRVVIVDAVPMLPSGKHDIARLKLELLLREQTEAENVS
Ga0265393_110721813300030586SoilRERLPRYAAPSRVVLVDAVPMLPSGKHDIARLKLELLRREQTESENVT
Ga0210283_106091313300030588SoilVVIVDAVPILPSGKHDIARLKLELLPREQTEAENVS
Ga0210280_102990723300030594SoilPSRVVIVDAVPMLPSGKHDIARLKLELLRREQTAAENVS
Ga0210278_104812623300030596SoilVVIVDAVPMLPSGKHDIARLKLELLRREQTESENVT
Ga0210286_112698913300030597SoilAAPSRVVIVDAVPMLPSGKHDIARLKLELLRREQTEAENVT
Ga0265392_114791523300030623SoilVIVDAVPMLPSGKHDIARLKLELLRREQTEAENVT
Ga0210259_1177833613300030625SoilRVVIVDAVPMLPSGKHDITRLKLDLLRREQTEAENVT
Ga0210291_1070052623300030626SoilVVMVDAVPMLPNGKHDIARLKLELLRREQTESENVP
Ga0210269_1010120423300030627SoilVVVVDAVPMLPSGKHDIARLKLELLRREPTEVENVS
Ga0210269_1027168523300030627SoilVMVDAVPMLPSGKHDLARLRRELLRREQTEAENVNY
Ga0210269_1034046923300030627SoilPRYASPSRVVIVDAVPMLPSGKHDITRLKLDLLRREQTEAENVT
Ga0210268_109776023300030629SoilVVEVDAIPMLPSGKHDIARLRQELLRREQTEAENVNY
Ga0210250_1091130323300030632SoilRVVVIDVIPMLVSGKHDLAGLRRELLRREQTEADSVPY
Ga0310038_1027440213300030707Peatlands SoilIVMVDAVPMLPSGKHDLARLRRELLRREQTEAENVSN
Ga0307482_103354223300030730Hardwood Forest SoilVDAVPLLPGGKQDLARLRQDLTELGNTTGREQTEPSSVTN
Ga0265462_1009278423300030738SoilVMVDAIPMLPSGKHDLARLRRELPRREQSEAESVTN
Ga0265459_1169904613300030741SoilRVVVIDVIPMLVSGKHDLAGLRRELLRREQTEADSVIY
Ga0265461_1024059713300030743SoilRLHVQQRLPRYAAPNRVVEVDAIPMLPSGKHDIARLRLELLRREQTEAENVNY
Ga0265461_1053823223300030743SoilLPRYAAPSRVVFVDAVPLLPSGKHDIAGLRRELLRREQTESESVTY
Ga0265461_1156674023300030743SoilLPRYAAPSRVVLVDAVPMLPSGKHDIARLKGDLLRREQIEA
Ga0265762_108608423300030760SoilPMLPSGKHDIARLRLELLQREQTEAENVNYLVPGL
Ga0265766_100766913300030863SoilRLPRYAAPSRVVLVDAVPALPNGKHDIARLKLDLLKREQTEAENVT
Ga0265768_10377723300030963SoilMVDAVPMLPSGKHDIVRLRQELLRREQTEAKSVIY
Ga0075399_1148893523300030967SoilVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVIY
Ga0170834_11111443213300031057Forest SoilRVVMIDAVPMLPSGKHDIARLRQELLRREQTEAENVT
Ga0308195_104893623300031123SoilMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY
Ga0170824_10359039223300031231Forest SoilVMVDAVPMLPSGKHDLARLRRELLRREQSEAESVTN
Ga0170818_10733989223300031474Forest SoilVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVIY
Ga0310686_11278733223300031708SoilRLHVQQRLPRYAAPNRVVEVDVIPMLPSGKHDIARLRLELLRREQTEAENVNY
Ga0318496_1042189323300031713SoilRYAIPSRVVMVDAVPMLPSGKHDIVRLRRELLRREQTEAESVTY
Ga0307476_1097091113300031715Hardwood Forest SoilVMLDAVPMLPSGKHDIVRLRQELLRREQTEAESVT
Ga0318502_1019574813300031747SoilRERLPRYAAPSRVVVVDAVPMLPSGKHDIAQIRRELPRREQTGAESVT
Ga0318526_1023998023300031769SoilVVMVAAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0318566_1032960913300031779SoilSRIVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0318508_125907913300031780SoilAIPSRVVTVDAVPMLPSGKHDIVRLRQELLRREQIEAESVTY
Ga0318529_1030039613300031792SoilVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0318523_1019654613300031798SoilPSKVVMVDAVPMLPSGKHDLARLRQDLLRREQTEAESVTN
Ga0316049_12106523300031866SoilMIDAVPMLPSGKHDLARLRRELLRREQSEAESVTY
Ga0316039_11965613300031891SoilAAPSKIVMVDAVPMLSSGKHDIARLKLELLRREQNEAESVS
Ga0318551_1019166513300031896SoilAIPSRVVMVDAVPVLPSGKHDIIRLREELLRREQTEAESVTY
Ga0308174_1176747013300031939SoilRYAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY
Ga0310916_1049711923300031942SoilERLPRYAIPSTVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0318531_1010544923300031981SoilVVMVDAVPMLPSGKHDLARLRQDLLRREQTEAESVTN
Ga0318562_1024330723300032008SoilRYAIPSTVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0318563_1035239423300032009SoilRYAIPSTVVMVDAVPMLPSGKHDIVRLRQELLQREQTEAESVIY
Ga0306924_1067412523300032076SoilYAIPSTVVMVDAVPMLPSGKHDIVRLRQELLQREQTEAESVTY
Ga0316051_100436713300032119SoilVVFVDAVPLLPSGKHDIAGLRRELLRREQTEAESVTY
Ga0348332_1103300023300032515Plant LitterPRYAAPSRVVLVDAVPALPNGKHDIARLKLDLLKREQTEAENVT
Ga0335070_1185528123300032829SoilRIVTVDAVPMLPSGKHDIVRLKQELLRREQTEAESVTY
Ga0335084_1212097113300033004SoilAPSRVVMVDAVPMLPSGKHDTVRLRRELLRREQTEAESVT
Ga0247829_1182091913300033550SoilYAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY
Ga0373948_0045972_790_9243300034817Rhizosphere SoilRYAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY


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