NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F054307

Metagenome / Metatranscriptome Family F054307

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F054307
Family Type Metagenome / Metatranscriptome
Number of Sequences 140
Average Sequence Length 39 residues
Representative Sequence EQLWGQAHADVIKNGMKPADAVDKAFKRCNEIFAKVAM
Number of Associated Samples 121
Number of Associated Scaffolds 140

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 97.86 %
% of genes from short scaffolds (< 2000 bps) 95.00 %
Associated GOLD sequencing projects 117
AlphaFold2 3D model prediction Yes
3D model pTM-score0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (87.143 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(12.857 % of family members)
Environment Ontology (ENVO) Unclassified
(23.571 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(37.857 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 39.39%    β-sheet: 0.00%    Coil/Unstructured: 60.61%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.64
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 140 Family Scaffolds
PF00528BPD_transp_1 24.29
PF13416SBP_bac_8 7.86
PF03824NicO 2.86
PF01370Epimerase 2.14
PF07883Cupin_2 1.43
PF01925TauE 0.71
PF04255DUF433 0.71
PF00196GerE 0.71
PF03755YicC_N 0.71
PF003892-Hacid_dh 0.71
PF01545Cation_efflux 0.71
PF10518TAT_signal 0.71
PF03466LysR_substrate 0.71
PF00005ABC_tran 0.71
PF00999Na_H_Exchanger 0.71
PF13495Phage_int_SAM_4 0.71

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 140 Family Scaffolds
COG0025NhaP-type Na+/H+ or K+/H+ antiporterInorganic ion transport and metabolism [P] 0.71
COG0053Divalent metal cation (Fe/Co/Zn/Cd) efflux pumpInorganic ion transport and metabolism [P] 0.71
COG0475Kef-type K+ transport system, membrane component KefBInorganic ion transport and metabolism [P] 0.71
COG0730Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 familyInorganic ion transport and metabolism [P] 0.71
COG1230Co/Zn/Cd efflux system componentInorganic ion transport and metabolism [P] 0.71
COG1561Endoribonuclease YloC, YicC familyTranslation, ribosomal structure and biogenesis [J] 0.71
COG2442Predicted antitoxin component of a toxin-antitoxin system, DUF433 familyDefense mechanisms [V] 0.71
COG3004Na+/H+ antiporter NhaAEnergy production and conversion [C] 0.71
COG3263NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domainsEnergy production and conversion [C] 0.71
COG3965Predicted Co/Zn/Cd cation transporter, cation efflux familyInorganic ion transport and metabolism [P] 0.71
COG4651Predicted Kef-type K+ transport protein, K+/H+ antiporter domainInorganic ion transport and metabolism [P] 0.71


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms87.14 %
UnclassifiedrootN/A12.86 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001356|JGI12269J14319_10276851All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300004080|Ga0062385_10931821All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis578Open in IMG/M
3300004152|Ga0062386_101095415Not Available661Open in IMG/M
3300005329|Ga0070683_101340299Not Available688Open in IMG/M
3300005344|Ga0070661_101721094All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300005437|Ga0070710_10073910All Organisms → cellular organisms → Bacteria1972Open in IMG/M
3300005456|Ga0070678_100454686All Organisms → cellular organisms → Bacteria1122Open in IMG/M
3300005468|Ga0070707_102222309All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017516Open in IMG/M
3300005529|Ga0070741_10360181All Organisms → cellular organisms → Bacteria1347Open in IMG/M
3300005541|Ga0070733_10512689All Organisms → cellular organisms → Bacteria802Open in IMG/M
3300005541|Ga0070733_10652979All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae706Open in IMG/M
3300005548|Ga0070665_100438990All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR651315Open in IMG/M
3300005591|Ga0070761_10365486All Organisms → cellular organisms → Bacteria876Open in IMG/M
3300005602|Ga0070762_10596800All Organisms → cellular organisms → Bacteria733Open in IMG/M
3300005614|Ga0068856_102640052All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300005616|Ga0068852_102141761All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium581Open in IMG/M
3300005764|Ga0066903_102958203All Organisms → cellular organisms → Bacteria921Open in IMG/M
3300005764|Ga0066903_105536935All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300005764|Ga0066903_108975301All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300006028|Ga0070717_10104001All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2415Open in IMG/M
3300006028|Ga0070717_11567401All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium597Open in IMG/M
3300006028|Ga0070717_11921439All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium534Open in IMG/M
3300006050|Ga0075028_100837007All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium563Open in IMG/M
3300006052|Ga0075029_101194849All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300006059|Ga0075017_101017269All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300006059|Ga0075017_101181347Not Available599Open in IMG/M
3300006102|Ga0075015_100618526All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300006172|Ga0075018_10760859All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium528Open in IMG/M
3300006174|Ga0075014_100158897All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae1110Open in IMG/M
3300006175|Ga0070712_100802296All Organisms → cellular organisms → Bacteria808Open in IMG/M
3300006358|Ga0068871_100929239All Organisms → cellular organisms → Bacteria → Proteobacteria807Open in IMG/M
3300006358|Ga0068871_101664181All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium605Open in IMG/M
3300006954|Ga0079219_11715736Not Available583Open in IMG/M
3300009093|Ga0105240_10737996All Organisms → cellular organisms → Bacteria1072Open in IMG/M
3300009098|Ga0105245_10279454All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium1631Open in IMG/M
3300009101|Ga0105247_11854563Not Available503Open in IMG/M
3300009176|Ga0105242_12015529All Organisms → cellular organisms → Bacteria620Open in IMG/M
3300009644|Ga0116121_1204656Not Available628Open in IMG/M
3300009665|Ga0116135_1466328All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium520Open in IMG/M
3300010154|Ga0127503_10377041All Organisms → cellular organisms → Bacteria1688Open in IMG/M
3300010154|Ga0127503_11123995All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium619Open in IMG/M
3300010369|Ga0136643_10742535All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300010379|Ga0136449_102121131All Organisms → cellular organisms → Bacteria824Open in IMG/M
3300010379|Ga0136449_103150690All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales639Open in IMG/M
3300011120|Ga0150983_16603018All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300012209|Ga0137379_11696776Not Available528Open in IMG/M
3300012212|Ga0150985_104085831Not Available541Open in IMG/M
3300012212|Ga0150985_110242867All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium579Open in IMG/M
3300012212|Ga0150985_112994290All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales836Open in IMG/M
3300012212|Ga0150985_114480442All Organisms → cellular organisms → Bacteria945Open in IMG/M
3300012350|Ga0137372_10720770Not Available721Open in IMG/M
3300012958|Ga0164299_10561240All Organisms → cellular organisms → Bacteria773Open in IMG/M
3300013105|Ga0157369_10738544All Organisms → cellular organisms → Bacteria1013Open in IMG/M
3300013307|Ga0157372_12517747All Organisms → cellular organisms → Bacteria591Open in IMG/M
3300014493|Ga0182016_10261198All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1079Open in IMG/M
3300014501|Ga0182024_12434850All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium566Open in IMG/M
3300014657|Ga0181522_10223213All Organisms → cellular organisms → Bacteria1111Open in IMG/M
3300015206|Ga0167644_1018597All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales3119Open in IMG/M
3300015371|Ga0132258_13134927All Organisms → cellular organisms → Bacteria1142Open in IMG/M
3300015372|Ga0132256_103925534Not Available500Open in IMG/M
3300015373|Ga0132257_101855620All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300016341|Ga0182035_11769629All Organisms → cellular organisms → Bacteria559Open in IMG/M
3300016371|Ga0182034_11940449All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300016445|Ga0182038_11664111Not Available575Open in IMG/M
3300016445|Ga0182038_12158631All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium505Open in IMG/M
3300017975|Ga0187782_11282596All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium574Open in IMG/M
3300018469|Ga0190270_10818077All Organisms → cellular organisms → Bacteria940Open in IMG/M
3300019183|Ga0184601_134708All Organisms → cellular organisms → Bacteria755Open in IMG/M
3300019240|Ga0181510_1067504All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium809Open in IMG/M
3300019244|Ga0180111_1144817All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300019256|Ga0181508_1220682All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila2557Open in IMG/M
3300019260|Ga0181506_1260246All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300019268|Ga0181514_1247812All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium588Open in IMG/M
3300020076|Ga0206355_1561322All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300020076|Ga0206355_1661837All Organisms → cellular organisms → Bacteria1206Open in IMG/M
3300021180|Ga0210396_10304124All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila1411Open in IMG/M
3300021401|Ga0210393_10408212All Organisms → cellular organisms → Bacteria1107Open in IMG/M
3300021406|Ga0210386_11387438All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium589Open in IMG/M
3300021474|Ga0210390_10181108All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila1780Open in IMG/M
3300021477|Ga0210398_10856173All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300021560|Ga0126371_11505864All Organisms → cellular organisms → Bacteria801Open in IMG/M
3300021860|Ga0213851_1806253All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria724Open in IMG/M
3300022467|Ga0224712_10143872All Organisms → cellular organisms → Bacteria1052Open in IMG/M
3300022505|Ga0242647_1018132All Organisms → cellular organisms → Bacteria689Open in IMG/M
3300022522|Ga0242659_1047344All Organisms → cellular organisms → Bacteria751Open in IMG/M
3300022522|Ga0242659_1113038All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium548Open in IMG/M
3300022527|Ga0242664_1045015All Organisms → cellular organisms → Bacteria790Open in IMG/M
3300022530|Ga0242658_1230389All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300022532|Ga0242655_10125038All Organisms → cellular organisms → Bacteria731Open in IMG/M
3300022557|Ga0212123_10747092All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium596Open in IMG/M
3300025906|Ga0207699_11214915All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium558Open in IMG/M
3300025928|Ga0207700_10846551All Organisms → cellular organisms → Bacteria818Open in IMG/M
3300025929|Ga0207664_11939153Not Available512Open in IMG/M
3300025938|Ga0207704_11081893All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria681Open in IMG/M
3300025939|Ga0207665_10075713All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2306Open in IMG/M
3300025944|Ga0207661_11547196Not Available607Open in IMG/M
3300025960|Ga0207651_10430923All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense1128Open in IMG/M
3300025960|Ga0207651_10627188All Organisms → cellular organisms → Bacteria942Open in IMG/M
3300026023|Ga0207677_11120422All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300026041|Ga0207639_10757944All Organisms → cellular organisms → Bacteria903Open in IMG/M
3300026116|Ga0207674_10499321All Organisms → cellular organisms → Bacteria1175Open in IMG/M
3300027703|Ga0207862_1047132All Organisms → cellular organisms → Bacteria1299Open in IMG/M
3300027783|Ga0209448_10202243All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300027895|Ga0209624_11065737All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium521Open in IMG/M
3300027908|Ga0209006_10031392All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila4817Open in IMG/M
3300027908|Ga0209006_10420930All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1122Open in IMG/M
3300028379|Ga0268266_10431368All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR651250Open in IMG/M
3300028873|Ga0302197_10483109Not Available541Open in IMG/M
3300028876|Ga0307286_10032035All Organisms → cellular organisms → Bacteria1737Open in IMG/M
3300029943|Ga0311340_10409815All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S1031243Open in IMG/M
3300029945|Ga0311330_10995370Not Available620Open in IMG/M
3300029952|Ga0311346_10780804All Organisms → cellular organisms → Bacteria810Open in IMG/M
3300029953|Ga0311343_10302773All Organisms → cellular organisms → Bacteria1549Open in IMG/M
3300029953|Ga0311343_10983541Not Available665Open in IMG/M
3300029990|Ga0311336_10708209All Organisms → cellular organisms → Bacteria864Open in IMG/M
3300030578|Ga0210275_10276076All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales576Open in IMG/M
3300030738|Ga0265462_12223270All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium540Open in IMG/M
3300031232|Ga0302323_100201132All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2013Open in IMG/M
3300031521|Ga0311364_10776174All Organisms → cellular organisms → Bacteria962Open in IMG/M
3300031525|Ga0302326_10484025All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila1883Open in IMG/M
3300031525|Ga0302326_11871779All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium782Open in IMG/M
3300031543|Ga0318516_10694712All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis578Open in IMG/M
3300031715|Ga0307476_11375864All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium514Open in IMG/M
3300031744|Ga0306918_10990093All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300031768|Ga0318509_10709843All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium558Open in IMG/M
3300031777|Ga0318543_10330319All Organisms → cellular organisms → Bacteria682Open in IMG/M
3300031942|Ga0310916_11454794All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium560Open in IMG/M
3300032001|Ga0306922_11823938All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium598Open in IMG/M
3300032009|Ga0318563_10088513All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila1625Open in IMG/M
3300032074|Ga0308173_11777322All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium581Open in IMG/M
3300032160|Ga0311301_12459268All Organisms → cellular organisms → Bacteria585Open in IMG/M
3300032261|Ga0306920_103232205All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium609Open in IMG/M
3300032515|Ga0348332_10579734All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila1916Open in IMG/M
3300032756|Ga0315742_12709679All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300032892|Ga0335081_11824912Not Available657Open in IMG/M
3300032896|Ga0335075_10729773All Organisms → cellular organisms → Bacteria945Open in IMG/M
3300032898|Ga0335072_11268959All Organisms → cellular organisms → Bacteria → Proteobacteria648Open in IMG/M
3300034643|Ga0370545_169384All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium510Open in IMG/M
3300034644|Ga0370548_123038All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium544Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil12.86%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.43%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds5.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.29%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog3.57%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.86%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.86%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.86%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.86%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere2.86%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.86%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.86%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.14%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.14%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere2.14%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.14%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen2.14%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.14%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds1.43%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.43%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil1.43%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.43%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.43%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.43%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.43%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.43%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere1.43%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.43%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.43%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.71%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.71%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.71%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.71%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.71%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.71%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.71%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.71%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.71%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.71%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.71%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.71%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.71%
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut0.71%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.71%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.71%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.71%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.71%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.71%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009644Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10EnvironmentalOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300010154Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010369Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 3)Host-AssociatedOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300015206Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300019183Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZA1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019240Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019244Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT293_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019256Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019260Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019268Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020076Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3)EnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300021856Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - LL:C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021860Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022467Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022505Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022522Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022527Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022530Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022532Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027703Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)EnvironmentalOpen in IMG/M
3300027783Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028873Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1EnvironmentalOpen in IMG/M
3300028876Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140EnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029945I_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029952II_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029953II_Bog_E3 coassemblyEnvironmentalOpen in IMG/M
3300029990I_Fen_N2 coassemblyEnvironmentalOpen in IMG/M
3300030578Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO105-VCO054SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030738Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assemblyEnvironmentalOpen in IMG/M
3300031232Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3EnvironmentalOpen in IMG/M
3300031521III_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032074Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300032756Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined AssemblyEnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M
3300034643Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034644Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12269J14319_1027685113300001356Peatlands SoilVSAEQLWGQCHADVIKNAMTPAAAVDKAFKRAEAIFSKVSFA*
Ga0062385_1093182113300004080Bog Forest SoilVSAEQLWGVMYADVIKDAMKPAEAVAKAFRRAEAIFSQYVFE*
Ga0062386_10109541523300004152Bog Forest SoilVNAEQLWGRAYADVIKDGATPTAAVDNAFKRAEAIFAKFTFG*
Ga0070683_10134029923300005329Corn RhizosphereAEQLWGQCHADVIKGGMKPSDAIDKAFKRCNEIFAKIQI*
Ga0070661_10172109413300005344Corn RhizosphereGQANAEQLWGQAHADVIKNGMKPADAVDKAFKRCNEIFAKVAM*
Ga0070710_1007391013300005437Corn, Switchgrass And Miscanthus RhizospherePAWGQVSAEQLWGVAYADVIKNGMKPTEAVDKAFKRAEAVFSRYTFD*
Ga0070678_10045468613300005456Miscanthus RhizosphereAEQLWTQACADVIKNGMTVQAAVDKAIKRAEAIFAKVTF*
Ga0070707_10222230913300005468Corn, Switchgrass And Miscanthus RhizosphereAWGQVSSEQLWGQAHADVIKNGMTAQAAVDKAFKRVEAIFSKYTFG*
Ga0070741_1036018113300005529Surface SoilLWGQAHADVIKNGMTPQQAVDKAFKRAEQIFSQVTF*
Ga0070733_1051268913300005541Surface SoilWGVAHADVIKNNMTPAAAVDKAFQRAEVIFKRYTVE*
Ga0070733_1065297913300005541Surface SoilAEQLWGNAHADVIKNGMTPAAAVDKAFRRAEAIFEKYTLG*
Ga0070665_10043899013300005548Switchgrass RhizosphereAEQLWGQAHADVIKNGMTPTAAVDKAFKRMETIFARFTFE*
Ga0070761_1036548623300005591SoilGQAHADVIKNGMKVADAVDKAFKRANQIFANMTFD*
Ga0070762_1059680013300005602SoilAEQLWGQAHADVIKNGMKVADAVDKAFKRCNEIFAKVVM*
Ga0068856_10264005213300005614Corn RhizospherePAWGQANAEQLWGQAHADVIKNNMKVADAVDKAFKRVAEVFAKFEHA*
Ga0068852_10214176123300005616Corn RhizosphereEQLWGQAHADVIKNGMKPADAVDKAFKRCNEIFAKVAM*
Ga0066903_10295820323300005764Tropical Forest SoilAEQLWGQAHADVIKSGMKPADAIDKAFKRCNEIFAQITI*
Ga0066903_10553693523300005764Tropical Forest SoilLWGQAHADVIKNGMTPEQAIDKAFKRAEAIFSAVTF*
Ga0066903_10897530123300005764Tropical Forest SoilLWGQAHADVIKNGMTPEQAIDKAFKRAEQIFSQVTF*
Ga0070717_1010400133300006028Corn, Switchgrass And Miscanthus RhizosphereQLWGNCHADVIKNGLTPSAAVDKAFKRAEAIFAKYTFG*
Ga0070717_1156740123300006028Corn, Switchgrass And Miscanthus RhizosphereLWGQAHADVIKSGMKPADAVDKAFKRCAEIFAKVVM*
Ga0070717_1192143913300006028Corn, Switchgrass And Miscanthus RhizosphereNAEQLWGQCHADVIKGGMKVADAVDKAFKRANAIFAKVVL*
Ga0075028_10083700713300006050WatershedsLWGQAQADVIKGNMKVADAVDKAFKRGNEIFARITI*
Ga0075029_10119484923300006052WatershedsGQANAEQLWGQAHADVIKNGMKPADAIDKAFKRCNEIFAKVET*
Ga0075017_10101726913300006059WatershedsAEQVWGVAHADVIKNNMKVADAIDKAFRRCNEVFAKITI*
Ga0075017_10118134713300006059WatershedsGQVGAEQLWGVAHADVIKNAMTPAAAVDKAFKRADAVTFG*
Ga0075015_10061852623300006102WatershedsWGQFEAEQVWGVAHADVIKNNMKVADAIDKAFRRCNEVFAKITI*
Ga0075018_1076085923300006172WatershedsGQAHADVIKNGMKVADAVDKAFKRCNEIFAKVVL*
Ga0075014_10015889723300006174WatershedsGVAYADVLKGGMTPQAAVDKAFRRAEAIFANYTFG*
Ga0070712_10080229623300006175Corn, Switchgrass And Miscanthus RhizosphereAEQLWGQAHADVIKSNMKPADAIDKAFKRCNEIFAKITI*
Ga0068871_10092923913300006358Miscanthus RhizosphereQAHADVIKNGMTPTAAIDKAFKRMETIFARFTFE*
Ga0068871_10166418123300006358Miscanthus RhizosphereWGQAHADVIKNGMKPADAVDKAFKRCNEIFAKVAM*
Ga0079219_1171573623300006954Agricultural SoilQIWGQAHADVIKSGMKPADAIDKAFKRCKEIFAKITI*
Ga0105240_1073799613300009093Corn RhizosphereNAEQLWGQAHADVIKNNMKAADAVDKALKRFKQIFAKMEV*
Ga0105245_1027945413300009098Miscanthus RhizosphereQANAEQLWGQAHADVIKNGMKPADAGDKAFKRCNEIFAKVAM*
Ga0105247_1185456313300009101Switchgrass RhizosphereRAHADVIKNNMKPADAVDKAFKRFEEIFAKVSFT*
Ga0105242_1201552923300009176Miscanthus RhizosphereEQVWGQAHADVIKGNMKVSDAIDKAFKRANEVFAKITI*
Ga0116121_120465613300009644PeatlandEQIWGVAHSDVTKDGMKVADAVDKAFRRADAIFAKYTLG*
Ga0116135_146632823300009665PeatlandQVQAEQLWMQSVADIIKNGMTAQAAVDKAFRRAEAIFTKFTFG*
Ga0127503_1037704113300010154SoilWGNCHADVIKNGMTPAAAVDKAFKRAEAIFAKFTFG*
Ga0127503_1112399513300010154SoilGQAHADVIKNNMKPADAIDKAFKRCNDIFTKMVM*
Ga0136643_1074253513300010369Termite GutSEQLWGQAHADVIKNGMTPEQAIDKAFKRAEAIFSAVTF*
Ga0136449_10212113123300010379Peatlands SoilLWGTAHADVIKNGMKVSDAVDKAFKRGNEIFAKITI*
Ga0136449_10315069023300010379Peatlands SoilGQLSAEQLWGQAHADVIKNGMTPAAAIDKAFKRAEQIFAQYTVG*
Ga0150983_1660301813300011120Forest SoilLWGTAHADVIKNGMTASDAIDKAFKRAERIFSNYTMG*
Ga0137379_1169677613300012209Vadose Zone SoilCDAEQIWGQAHADVIKNSMTPAAAIDKAFKRCNQIFAKIVI*
Ga0150985_10408583113300012212Avena Fatua RhizosphereLWGQAHADVIKNGMTPTAAVDKAFKRMETIFSKYTFG*
Ga0150985_11024286713300012212Avena Fatua RhizosphereAEQLWGQCHADVIKNSMKVADAVDKAFRRAEQVFAKFSHA*
Ga0150985_11299429023300012212Avena Fatua RhizosphereVNGEQIWGQCHADVIKNAMTPAQAVDKAFKRANQIFAKMLQG*
Ga0150985_11448044213300012212Avena Fatua RhizosphereANAEQLWGQAHADVIKNKMEPVAAVDKAFKRFNEIFSKVSFT*
Ga0137372_1072077023300012350Vadose Zone SoilEQIWGQAHADVIKNSMTPAAAIDKAFKRCNQIFAKIVI*
Ga0164299_1056124013300012958SoilWGQFEAEQVWGLAHADVIKNNMKVADAVDKAFKRANEVFAKITI*
Ga0157369_1073854423300013105Corn RhizosphereWGQAHADVIKNGMKPADAVDKAFKRANEIFAKMAT*
Ga0157372_1251774723300013307Corn RhizosphereWGQAHADVIKNGMKPAAAVDKAFKRANEIFAKMAT*
Ga0182016_1026119813300014493BogNAEQLWGLAHADVIKNGMTPAAAVDRAFRRMEAIFSKFTFE*
Ga0182024_1243485023300014501PermafrostSPAWGQANAEQLWGQAHADVIKSNMKVADAVDKAFKRCNEIFSKVIM*
Ga0181522_1022321313300014657BogVSAEQIWTQSHADVIKNGMKVSDAVDKAFKRAEQIFARVTYD*
Ga0167644_101859713300015206Glacier Forefield SoilGQANAEQLWGQAHADVIKNGMKVADAVDKAFKRCNEIFAKMVM*
Ga0132258_1313492723300015371Arabidopsis RhizosphereEQLWGNCHADVIKNGMTPNAAVDKAFRRMEAIFAKFTFE*
Ga0132256_10392553413300015372Arabidopsis RhizosphereEAEQVWGLAHADVIKNNMKVADAVDKAFKRANEVFAKITI*
Ga0132257_10185562013300015373Arabidopsis RhizosphereQLWGQAHADVIKSNMKPADAIDKAFKRCNEIFAKITI*
Ga0182035_1176962913300016341SoilQIWGNCHSDVIKNGMTPAAAVDKAFKRVEAIFAKFTFG
Ga0182034_1194044913300016371SoilSAEQIWGNCHADVIKNGMTPAAAVDKAFKRVEAIFAKFTFG
Ga0182038_1166411123300016445SoilLGSAHADVIKNEMKPADAVDKAFERAEAIFAKVSFG
Ga0182038_1215863113300016445SoilEQLWGQAHADVIKNGMKPADAVDKAFKRCTEIFAKITI
Ga0187782_1128259613300017975Tropical PeatlandAWGQASAEQLWGQAHADVIKNGMKVTEAVDKAFKRCSEIFARLST
Ga0190270_1081807713300018469SoilEQIWGQCHADVIKNGMTPQQAVDKAFKRVESIFTKFAVG
Ga0184601_13470813300019183SoilWGQAHADVIKNGMKVADAVDKAFKRCNAIFSRLTM
Ga0181510_106750423300019240PeatlandANAEQLWGQAHADVIKNGVKVADAVDKAFKRCEEIFAKVVM
Ga0180111_114481723300019244Groundwater SedimentNAEQVWGQCHADVVKNGLTPTQAVDKAFKRADAIFTKFSFG
Ga0181508_122068233300019256PeatlandAEQLWGQAHADVIKNGMTASAAVDKAFRRAETIFAKFTFG
Ga0181506_126024613300019260PeatlandVNAEQLWGTAHADVIKNGMTPAAAVDKAFRRAEAIFAKFTFG
Ga0181514_124781213300019268PeatlandGQANAEQLWGQAHADVIKNGMKVADAVDKAFKRCNEIFAKVIM
Ga0206355_156132213300020076Corn, Switchgrass And Miscanthus RhizosphereQLWGQCHADVIKNGMKVADAVDKAFKRCNEVFARVAL
Ga0206355_166183713300020076Corn, Switchgrass And Miscanthus RhizosphereEQLWTQACADVIKNGMTVQAAVGKAIKRAEEIFAKVTF
Ga0210396_1030412413300021180SoilQASAEQLWGQAHADVIKNGMKVADAVDKAFKRCNEVFSKVVM
Ga0210393_1040821223300021401SoilEQLWGQAHADVIKNGMKVADAVDKAFKRCNEIFAKVVM
Ga0210386_1138743813300021406SoilAEQLWGQAHADVIKNGMKVSDAVDKAFKRCSEVFAKVAM
Ga0210390_1018110833300021474SoilANAEQLWGQAHADVIKNGMKVADAVDKAFKRCNEIFAKVVM
Ga0210398_1085617333300021477SoilQICAEQLWGVAHADVVKQAMTPAAAVDKAFRRAEAIFERFTFG
Ga0126371_1150586423300021560Tropical Forest SoilPAWGQCGAEQLWGQAHADVIKNGMKVADAVDKALKRHKEIFAKMSA
Ga0213850_148676133300021856WatershedsFMSSVADVVKNGMTPQAALDKAFKRANEIFAKFVFA
Ga0213851_180625323300021860WatershedsWGVAHADVIKNGMTPADAVDKASRRAEAIFAKYTFG
Ga0224712_1014387213300022467Corn, Switchgrass And Miscanthus RhizosphereWTQCHADVIKNGMTPAQAVDKCLKRAEAIFSKVSFG
Ga0242647_101813223300022505SoilWGQAHADVIKNGMKVADAVDKAFKRCNEIFAKVIM
Ga0242659_104734423300022522SoilLWGQAHADVIKNGMTPAAAVDKAFSRAEAIFAKYTFG
Ga0242659_111303813300022522SoilPAWGQANAEQLWGQAHADVIKNGMKVSDAVDKAFKRCSEVFAKVAM
Ga0242664_104501513300022527SoilQLWGQAHADVIKNGMKVADAVDKAFKRCNEIFAKVIM
Ga0242658_123038923300022530SoilWGQAHADVIKNGMRPSEAVDKAFKRMQAIFSKFTFD
Ga0242655_1012503813300022532SoilAEQLWGVAHADVIKNGMTPAAAIDKAFKRADAIFAKYTFG
Ga0212123_1074709223300022557Iron-Sulfur Acid SpringNAEQLWGQAHADVIKNGMKVADAVDKAFKRTEQIFAKMTFG
Ga0207699_1121491513300025906Corn, Switchgrass And Miscanthus RhizosphereAEQLWGQAHADVIKSNMKPADAIDKAFKRCNEIFAKITI
Ga0207700_1084655123300025928Corn, Switchgrass And Miscanthus RhizosphereEQLWGNCHADVIKNGMTPAAAVDKAFKRAEAIFAKFTFG
Ga0207664_1193915313300025929Agricultural SoilAWGLSNSEQLWGRAHADVIKSGIKPADAVDKAFKRFDEIFAKVSFS
Ga0207704_1108189323300025938Miscanthus RhizosphereWGQAHADVIKNGMTPTAAVDKAFKRMETIFARFTFE
Ga0207665_1007571313300025939Corn, Switchgrass And Miscanthus RhizosphereWGQVSAEQLWGNCHADVIKNGMTPAAAVDKAFKRAEAIFAKFTFG
Ga0207661_1154719623300025944Corn RhizosphereDAEQLWGQCHADVIKGGMKPSDAIDKAFKRCNEIFAKIQI
Ga0207651_1043092333300025960Switchgrass RhizosphereWGQCDAEQLWGQAHADVIKGGMKPADAVDKAFKRCNAIFAKIQI
Ga0207651_1062718813300025960Switchgrass RhizosphereNAEQLWGQAHADVIKNGMKPADAVDKAFKRCNEIFAKVAM
Ga0207677_1112042213300026023Miscanthus RhizosphereGQVAAEQLWTQACADVIKNGMTVQAAVDKAIKRAEAIFAKVTF
Ga0207639_1075794413300026041Corn RhizosphereEQLWGQAHADVIKNGMKPADAVDKAFKRCNEIFAKVAM
Ga0207674_1049932113300026116Corn RhizosphereAEQLWGNCHADVIKNGMTPSAAIDKAFKRAEAIFAKYTFG
Ga0207862_104713213300027703Tropical Forest SoilWGQAHADVIKNGMTPEQAIDKAFKRAEQIFSQVTF
Ga0209448_1020224313300027783Bog Forest SoilLWGQAHADVIKNGMKVADAVDKAFKRCNEIFAKITI
Ga0209624_1106573723300027895Forest SoilPAWGQANAEQLWGQAHADVIKNGMKVADAVDKAFKRCNEIFAKVVM
Ga0209006_1003139213300027908Forest SoilAEQLWGNCHADVIKNGMTPAAAVDKAFTRAEAIFAKFTFG
Ga0209006_1042093013300027908Forest SoilWGQAHADVIKNGMTLAAAVDKAFSRMERIFSEYTFD
Ga0268266_1043136813300028379Switchgrass RhizosphereNAEQLWGQAHADVIKNGMTPTAAVDKAFKRMETIFARFTFE
Ga0302197_1048310913300028873BogWGQAHADVIKNGLKPADAVDKAFRRAETIFAKFTFG
Ga0307286_1003203513300028876SoilMRRRQLWGQAHADVIKNGMTPAAAIDKAFKRCNEIFTKIVI
Ga0311340_1040981523300029943PalsaINAEQLWSVAHADVIKNRMTPVDAVDKAFRRAEAIFAKFTFR
Ga0311330_1099537023300029945BogQVSAEQLWGQAHADVIKDGIKPADAVDKAFRRAETIFAKFTFG
Ga0311346_1078080423300029952BogWGQAHADVIKNGMTPAQAIDKAFKRTEQIFAKMTFD
Ga0311343_1030277323300029953BogAEQLWGVAHADVIRNGMTASDAVDKAFRRAETIFTRFTFG
Ga0311343_1098354113300029953BogNAEQLWGVAHADVIKNGMTPAAAVDKAFRRAEAIFAKFTFG
Ga0311336_1070820913300029990FenWGQAQADVIKGGMTAAAAIDKAFKRADQIFTKYPT
Ga0210275_1027607613300030578SoilQLWGVAHADVIKNGMTPTDAVDKAFRRAEAIFAKFTFG
Ga0265462_1222327023300030738SoilWGQAHADVIKNGMKPAEAVDKAFKRTEQIFAKMTFG
Ga0302323_10020113233300031232FenVCAEQVWGQAQADVIKGGMTAAAAIDKAFKRADQIFAKYPT
Ga0311364_1077617413300031521FenWGQAQADVIKGGMTAAAAIDKAFKRADQIFAKYPT
Ga0302326_1048402513300031525PalsaQIWGQAHADVIKNSMKAADAVDKAFKRASQIFASMVM
Ga0302326_1187177923300031525PalsaGQANAEQLWGQAHADVIKNGMKVADAVDKAFRRTEQIFAKMTFG
Ga0318516_1069471213300031543SoilWGQAHADVIKNGMTPTAAIDKAFKRCNEIFAKITI
Ga0307476_1137586423300031715Hardwood Forest SoilQVWGQAHADVIKNGMTPEQAIDKAFKRAEAIFSTVTF
Ga0306918_1099009323300031744SoilIWGQAHADVIKNGMTPEQAIDKAFKRAEQIFSQVTF
Ga0318509_1070984313300031768SoilGQCDAEQLWGQAHADVIKNGMKPADAVDKAFKRCTEIFAKITI
Ga0318543_1033031913300031777SoilQLWGQAHADVIKNGMKVADAVDKAFKRCNEIFARVVM
Ga0310916_1145479413300031942SoilPLRGQAQADVIKNGKKVADAVDKAFKRCNEIFARVVM
Ga0306922_1182393813300032001SoilLWGQAHADVIKNGMKVADAVDKAFKRCNEIFARVVM
Ga0318563_1008851333300032009SoilAEQLWGQAHADVIKNGMKVADAVDKAFKRCNEIFARVVM
Ga0308173_1177732213300032074SoilWGQANAEQLWGQAHADVIKNSMKPADAVDKAFKRANEIFARMAT
Ga0311301_1245926823300032160Peatlands SoilGLAHADVIKNGMTPAAAVDKAFKRAEAIFTKFTFG
Ga0306920_10323220523300032261SoilEQLWGQAHADVIKNGMKVADAVDKAFKRCNEIFARVVM
Ga0348332_1057973433300032515Plant LitterNAEHLWGVCHADVIKNGMTPAQAVDKCFSRVEAIFAKFTFG
Ga0315742_1270967913300032756Forest SoilGQVNAEQLFGQCHADVIKNGMTPAAAVDKAFRRAEAIFAKFTFG
Ga0335081_1182491213300032892SoilCDAEQLWGQAHADVIKNGATPAASIDKAFKRCNEIFAKITI
Ga0335075_1072977323300032896SoilWGQANAEQLWGQAHADVIKNGMKVSDAVDKAFKRCNEIFSRVEM
Ga0335072_1126895923300032898SoilLWGQAEADVIKSNMTPEAAVDKAFRRAEQIFSRYKIGET
Ga0370545_169384_2_1393300034643SoilAYGQVAAEQLWTQACADVIKNGMTVQVAVNKAIKRAEEIFAKVTF
Ga0370548_123038_425_5443300034644SoilAEQLWGQASADVIKGNMKPADAVDKAFKRGNEIFARIVI


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