NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F054259

Metagenome / Metatranscriptome Family F054259

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F054259
Family Type Metagenome / Metatranscriptome
Number of Sequences 140
Average Sequence Length 37 residues
Representative Sequence MTEPTYEELKARLSQLEKEVETKKRSGDLIFKVGEKGG
Number of Associated Samples 127
Number of Associated Scaffolds 140

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 98.57 %
% of genes near scaffold ends (potentially truncated) 98.57 %
% of genes from short scaffolds (< 2000 bps) 90.71 %
Associated GOLD sequencing projects 121
AlphaFold2 3D model prediction Yes
3D model pTM-score0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (75.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(13.571 % of family members)
Environment Ontology (ENVO) Unclassified
(22.857 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.143 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 27.27%    β-sheet: 0.00%    Coil/Unstructured: 72.73%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.39
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 140 Family Scaffolds
PF13620CarboxypepD_reg 7.14
PF01979Amidohydro_1 2.14
PF02469Fasciclin 1.43
PF01243Putative_PNPOx 1.43
PF01977UbiD 1.43
PF06537DHOR 0.71
PF00926DHBP_synthase 0.71
PF02129Peptidase_S15 0.71
PF03460NIR_SIR_ferr 0.71
PF12801Fer4_5 0.71
PF09286Pro-kuma_activ 0.71
PF12704MacB_PCD 0.71
PF02687FtsX 0.71
PF05649Peptidase_M13_N 0.71
PF11875DnaJ-like_C11_C 0.71
PF01592NifU_N 0.71
PF14310Fn3-like 0.71
PF12867DinB_2 0.71
PF00950ABC-3 0.71
PF02583Trns_repr_metal 0.71
PF02371Transposase_20 0.71
PF07238PilZ 0.71
PF01609DDE_Tnp_1 0.71
PF06071YchF-GTPase_C 0.71
PF01326PPDK_N 0.71
PF14659Phage_int_SAM_3 0.71
PF00892EamA 0.71
PF00578AhpC-TSA 0.71
PF00107ADH_zinc_N 0.71
PF13432TPR_16 0.71
PF00873ACR_tran 0.71
PF00072Response_reg 0.71
PF01297ZnuA 0.71

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 140 Family Scaffolds
COG00433-polyprenyl-4-hydroxybenzoate decarboxylaseCoenzyme transport and metabolism [H] 1.43
COG2335Uncaracterized surface protein containing fasciclin (FAS1) repeatsGeneral function prediction only [R] 1.43
COG5659SRSO17 transposaseMobilome: prophages, transposons [X] 0.71
COG0012Ribosome-binding ATPase YchF, GTP1/OBG familyTranslation, ribosomal structure and biogenesis [J] 0.71
COG5433Predicted transposase YbfD/YdcC associated with H repeatsMobilome: prophages, transposons [X] 0.71
COG5421TransposaseMobilome: prophages, transposons [X] 0.71
COG4934Serine protease, subtilase familyPosttranslational modification, protein turnover, chaperones [O] 0.71
COG4606ABC-type enterochelin transport system, permease componentInorganic ion transport and metabolism [P] 0.71
COG3590Predicted metalloendopeptidasePosttranslational modification, protein turnover, chaperones [O] 0.71
COG3547TransposaseMobilome: prophages, transposons [X] 0.71
COG3488Uncharacterized conserved protein with two CxxC motifs, DUF1111 familyGeneral function prediction only [R] 0.71
COG3385IS4 transposase InsGMobilome: prophages, transposons [X] 0.71
COG3293TransposaseMobilome: prophages, transposons [X] 0.71
COG3039Transposase and inactivated derivatives, IS5 familyMobilome: prophages, transposons [X] 0.71
COG1937DNA-binding transcriptional regulator, FrmR familyTranscription [K] 0.71
COG1108ABC-type Mn2+/Zn2+ transport system, permease componentInorganic ion transport and metabolism [P] 0.71
COG0822Fe-S cluster assembly scaffold protein IscU, NifU familyPosttranslational modification, protein turnover, chaperones [O] 0.71
COG0609ABC-type Fe3+-siderophore transport system, permease componentInorganic ion transport and metabolism [P] 0.71
COG0574Phosphoenolpyruvate synthase/pyruvate phosphate dikinaseCarbohydrate transport and metabolism [G] 0.71
COG01083,4-dihydroxy-2-butanone 4-phosphate synthaseCoenzyme transport and metabolism [H] 0.71


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms75.00 %
UnclassifiedrootN/A25.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001471|JGI12712J15308_10117203Not Available679Open in IMG/M
3300001593|JGI12635J15846_10070211All Organisms → cellular organisms → Bacteria → Acidobacteria2594Open in IMG/M
3300002245|JGIcombinedJ26739_101380870All Organisms → cellular organisms → Bacteria → Acidobacteria597Open in IMG/M
3300004080|Ga0062385_10064664All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1643Open in IMG/M
3300004092|Ga0062389_100072330All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2900Open in IMG/M
3300005179|Ga0066684_10104874All Organisms → cellular organisms → Bacteria1738Open in IMG/M
3300005437|Ga0070710_10893247All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium641Open in IMG/M
3300005529|Ga0070741_11766654Not Available501Open in IMG/M
3300005534|Ga0070735_10735116All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium582Open in IMG/M
3300005591|Ga0070761_10525350Not Available732Open in IMG/M
3300005591|Ga0070761_10717013All Organisms → cellular organisms → Bacteria → Acidobacteria627Open in IMG/M
3300005602|Ga0070762_10000326All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae19161Open in IMG/M
3300005764|Ga0066903_105496022All Organisms → cellular organisms → Bacteria668Open in IMG/M
3300005844|Ga0068862_100268657All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1559Open in IMG/M
3300005921|Ga0070766_10387336All Organisms → cellular organisms → Bacteria → Proteobacteria913Open in IMG/M
3300006162|Ga0075030_101165243All Organisms → cellular organisms → Bacteria → Acidobacteria606Open in IMG/M
3300006173|Ga0070716_101460792Not Available558Open in IMG/M
3300006174|Ga0075014_100403932All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium745Open in IMG/M
3300006354|Ga0075021_11114498Not Available517Open in IMG/M
3300006642|Ga0075521_10040936All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA1171990Open in IMG/M
3300006806|Ga0079220_11766801Not Available543Open in IMG/M
3300006852|Ga0075433_11724270Not Available539Open in IMG/M
3300006871|Ga0075434_101682126All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300006903|Ga0075426_11007700Not Available630Open in IMG/M
3300009029|Ga0066793_10875371Not Available509Open in IMG/M
3300009029|Ga0066793_10893769All Organisms → cellular organisms → Bacteria → Acidobacteria502Open in IMG/M
3300009038|Ga0099829_10826668All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium769Open in IMG/M
3300009089|Ga0099828_10047284All Organisms → cellular organisms → Bacteria3555Open in IMG/M
3300009093|Ga0105240_11656840Not Available668Open in IMG/M
3300009162|Ga0075423_11164484All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae822Open in IMG/M
3300009764|Ga0116134_1089438Not Available1124Open in IMG/M
3300009839|Ga0116223_10466102All Organisms → cellular organisms → Bacteria → Acidobacteria738Open in IMG/M
3300010048|Ga0126373_10957566All Organisms → cellular organisms → Bacteria → Acidobacteria921Open in IMG/M
3300010048|Ga0126373_12963938All Organisms → cellular organisms → Bacteria → Acidobacteria529Open in IMG/M
3300010343|Ga0074044_10587994All Organisms → cellular organisms → Bacteria727Open in IMG/M
3300010343|Ga0074044_10922864All Organisms → cellular organisms → Bacteria → Acidobacteria571Open in IMG/M
3300010396|Ga0134126_12412948All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus572Open in IMG/M
3300010401|Ga0134121_12597212Not Available550Open in IMG/M
3300012096|Ga0137389_10872860Not Available772Open in IMG/M
3300012202|Ga0137363_10955910All Organisms → cellular organisms → Bacteria727Open in IMG/M
3300012203|Ga0137399_11331540All Organisms → cellular organisms → Bacteria → Acidobacteria603Open in IMG/M
3300012469|Ga0150984_119762234Not Available501Open in IMG/M
3300012924|Ga0137413_11821811All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium503Open in IMG/M
3300012975|Ga0134110_10289831Not Available704Open in IMG/M
3300013104|Ga0157370_10911000All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117798Open in IMG/M
3300013308|Ga0157375_13597359Not Available516Open in IMG/M
3300014200|Ga0181526_10954736Not Available539Open in IMG/M
3300014657|Ga0181522_10147949All Organisms → cellular organisms → Bacteria1373Open in IMG/M
3300015053|Ga0137405_1083390All Organisms → cellular organisms → Bacteria → Acidobacteria778Open in IMG/M
3300015053|Ga0137405_1196892Not Available533Open in IMG/M
3300015053|Ga0137405_1253947All Organisms → cellular organisms → Bacteria → Acidobacteria829Open in IMG/M
3300015373|Ga0132257_103040012All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium611Open in IMG/M
3300017940|Ga0187853_10079785All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1633Open in IMG/M
3300017940|Ga0187853_10295711Not Available733Open in IMG/M
3300017943|Ga0187819_10482776Not Available708Open in IMG/M
3300017948|Ga0187847_10871145All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300017955|Ga0187817_10598740All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae703Open in IMG/M
3300017955|Ga0187817_10752927All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium622Open in IMG/M
3300017959|Ga0187779_10122579All Organisms → cellular organisms → Bacteria1583Open in IMG/M
3300017959|Ga0187779_10360588Not Available941Open in IMG/M
3300017970|Ga0187783_10403530All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium993Open in IMG/M
3300018003|Ga0187876_1209959All Organisms → cellular organisms → Bacteria → Acidobacteria650Open in IMG/M
3300018007|Ga0187805_10204862Not Available901Open in IMG/M
3300018013|Ga0187873_1352300Not Available538Open in IMG/M
3300018018|Ga0187886_1239275All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium689Open in IMG/M
3300018026|Ga0187857_10050495All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2135Open in IMG/M
3300018030|Ga0187869_10144378Not Available1183Open in IMG/M
3300018033|Ga0187867_10053353All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2423Open in IMG/M
3300018062|Ga0187784_10657441All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300018086|Ga0187769_10024494All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4041Open in IMG/M
3300018086|Ga0187769_10240314All Organisms → cellular organisms → Bacteria1346Open in IMG/M
3300018090|Ga0187770_10313601All Organisms → cellular organisms → Bacteria1222Open in IMG/M
3300018468|Ga0066662_10140272All Organisms → cellular organisms → Bacteria → Acidobacteria1807Open in IMG/M
3300019786|Ga0182025_1245229All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1812Open in IMG/M
3300019787|Ga0182031_1386327All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus → Terracidiphilus gabretensis3061Open in IMG/M
3300021088|Ga0210404_10476986All Organisms → cellular organisms → Bacteria → Acidobacteria703Open in IMG/M
3300021171|Ga0210405_10422130All Organisms → cellular organisms → Bacteria1049Open in IMG/M
3300021402|Ga0210385_10107797All Organisms → cellular organisms → Bacteria → Acidobacteria1951Open in IMG/M
3300021402|Ga0210385_10867866All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium693Open in IMG/M
3300021403|Ga0210397_10450925All Organisms → cellular organisms → Bacteria → Acidobacteria968Open in IMG/M
3300021420|Ga0210394_11758837All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300021432|Ga0210384_10665076All Organisms → cellular organisms → Bacteria → Acidobacteria933Open in IMG/M
3300021559|Ga0210409_10736174All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium858Open in IMG/M
3300021560|Ga0126371_12530935All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300022515|Ga0224546_1012234All Organisms → cellular organisms → Bacteria → Acidobacteria687Open in IMG/M
3300022557|Ga0212123_10498559All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae791Open in IMG/M
3300022734|Ga0224571_108301Not Available705Open in IMG/M
3300024177|Ga0247686_1002655All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1873Open in IMG/M
3300024220|Ga0224568_1033576All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300024246|Ga0247680_1067315All Organisms → cellular organisms → Bacteria → Acidobacteria524Open in IMG/M
3300025459|Ga0208689_1093270Not Available540Open in IMG/M
3300025507|Ga0208188_1004204All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5332Open in IMG/M
3300025939|Ga0207665_11029629All Organisms → cellular organisms → Bacteria → Acidobacteria655Open in IMG/M
3300026011|Ga0208532_1002882All Organisms → cellular organisms → Bacteria → Acidobacteria893Open in IMG/M
3300026095|Ga0207676_10923455All Organisms → cellular organisms → Bacteria857Open in IMG/M
3300026327|Ga0209266_1296282All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium509Open in IMG/M
3300026482|Ga0257172_1063073Not Available680Open in IMG/M
3300026498|Ga0257156_1087659Not Available647Open in IMG/M
3300026537|Ga0209157_1375384All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium512Open in IMG/M
3300026538|Ga0209056_10064663All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus3175Open in IMG/M
3300026557|Ga0179587_10349070All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium959Open in IMG/M
3300027516|Ga0207761_1107639All Organisms → cellular organisms → Bacteria543Open in IMG/M
3300027603|Ga0209331_1075069All Organisms → cellular organisms → Bacteria → Acidobacteria841Open in IMG/M
3300027701|Ga0209447_10120768All Organisms → cellular organisms → Bacteria → Acidobacteria720Open in IMG/M
3300027737|Ga0209038_10248876All Organisms → cellular organisms → Bacteria → Acidobacteria533Open in IMG/M
3300027767|Ga0209655_10241133All Organisms → cellular organisms → Bacteria → Acidobacteria591Open in IMG/M
3300027846|Ga0209180_10260034All Organisms → cellular organisms → Bacteria998Open in IMG/M
3300027875|Ga0209283_10926000All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300027884|Ga0209275_10120002All Organisms → cellular organisms → Bacteria → Acidobacteria1366Open in IMG/M
3300027895|Ga0209624_10618395Not Available718Open in IMG/M
3300028380|Ga0268265_10249210All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1572Open in IMG/M
3300028798|Ga0302222_10022178All Organisms → cellular organisms → Bacteria → Acidobacteria2601Open in IMG/M
3300028882|Ga0302154_10550201Not Available546Open in IMG/M
3300029907|Ga0311329_10875919Not Available566Open in IMG/M
3300030518|Ga0302275_10472802All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium636Open in IMG/M
3300030687|Ga0302309_10239843All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium917Open in IMG/M
3300030842|Ga0075404_11223622All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300030848|Ga0075388_11550956All Organisms → cellular organisms → Bacteria779Open in IMG/M
3300030991|Ga0073994_11923497All Organisms → cellular organisms → Bacteria → Acidobacteria519Open in IMG/M
3300030991|Ga0073994_12076927All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium606Open in IMG/M
3300031028|Ga0302180_10573409Not Available546Open in IMG/M
3300031057|Ga0170834_109436177Not Available774Open in IMG/M
3300031128|Ga0170823_12744550All Organisms → cellular organisms → Bacteria → Acidobacteria599Open in IMG/M
3300031241|Ga0265325_10079667All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1630Open in IMG/M
3300031573|Ga0310915_11205894All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
3300031708|Ga0310686_115924069Not Available627Open in IMG/M
3300031715|Ga0307476_10722038All Organisms → cellular organisms → Bacteria → Acidobacteria738Open in IMG/M
3300031753|Ga0307477_10423103All Organisms → cellular organisms → Bacteria → Acidobacteria910Open in IMG/M
3300031754|Ga0307475_11372820All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300031788|Ga0302319_10559386All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1205Open in IMG/M
3300031788|Ga0302319_10629817All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA1171107Open in IMG/M
3300031833|Ga0310917_10230806All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1243Open in IMG/M
3300031912|Ga0306921_11200161All Organisms → cellular organisms → Bacteria → Acidobacteria845Open in IMG/M
3300031942|Ga0310916_11045098All Organisms → cellular organisms → Bacteria → Acidobacteria680Open in IMG/M
3300031962|Ga0307479_10029225All Organisms → cellular organisms → Bacteria → Acidobacteria5251Open in IMG/M
3300031996|Ga0308176_11669698Not Available679Open in IMG/M
3300032205|Ga0307472_101874854All Organisms → cellular organisms → Bacteria → Acidobacteria597Open in IMG/M
3300032783|Ga0335079_11347954All Organisms → cellular organisms → Bacteria711Open in IMG/M
3300032828|Ga0335080_10887426All Organisms → cellular organisms → Bacteria → Acidobacteria915Open in IMG/M
3300033888|Ga0334792_024282All Organisms → cellular organisms → Bacteria → Acidobacteria2113Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil13.57%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil8.57%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland6.43%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland5.00%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.57%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.57%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.57%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil3.57%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog3.57%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment2.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.86%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.86%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland2.14%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.14%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.14%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.14%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.14%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.14%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.43%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.43%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.43%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.43%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.43%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.43%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil1.43%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.43%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil1.43%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.71%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.71%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.71%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.71%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.71%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.71%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.71%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.71%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.71%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.71%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.71%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.71%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.71%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.71%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.71%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.71%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.71%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001471Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300006642Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-DEnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009764Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40EnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300013104Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300017940Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018003Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40EnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300018013Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100EnvironmentalOpen in IMG/M
3300018018Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150EnvironmentalOpen in IMG/M
3300018026Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100EnvironmentalOpen in IMG/M
3300018030Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100EnvironmentalOpen in IMG/M
3300018033Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019786Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300019787Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022515Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 1-5EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300022734Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU3Host-AssociatedOpen in IMG/M
3300024177Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK27EnvironmentalOpen in IMG/M
3300024220Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU5EnvironmentalOpen in IMG/M
3300024246Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21EnvironmentalOpen in IMG/M
3300025459Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)EnvironmentalOpen in IMG/M
3300025507Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026011Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301 (SPAdes)EnvironmentalOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026327Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)EnvironmentalOpen in IMG/M
3300026482Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-BEnvironmentalOpen in IMG/M
3300026498Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-AEnvironmentalOpen in IMG/M
3300026537Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027516Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)EnvironmentalOpen in IMG/M
3300027603Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027701Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027737Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027767Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028798Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2EnvironmentalOpen in IMG/M
3300028882Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3EnvironmentalOpen in IMG/M
3300029907I_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300030518Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2EnvironmentalOpen in IMG/M
3300030687Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1EnvironmentalOpen in IMG/M
3300030842Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030848Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030991Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031028Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031241Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaGHost-AssociatedOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031788Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300031996Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300033888Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12712J15308_1011720333300001471Forest SoilMTEPSYEELKARLADLEKQVDTKKRSGAIEFRVSEKGGVSV
JGI12635J15846_1007021133300001593Forest SoilMSEPTYEELKARLSQLEKEVDTKKRSGDLIFKVGEKGGVS
JGIcombinedJ26739_10138087013300002245Forest SoilMTEPTYEELKAKLSQLEKQVETKKRSGVMEFKVSEKGGVS
Ga0062385_1006466433300004080Bog Forest SoilMAEPTYEELKAKLSQLEKEVEVKKRSGDLIFKVGEKGGVSV
Ga0062389_10007233033300004092Bog Forest SoilMSEPTYEELKAKLSQLEKEVETKKRSGDLIFKVGEKGGVS
Ga0066684_1010487433300005179SoilMSVMSEPTPEELKARIAELEQKLSSRRSKNLEFRVSEKGGV
Ga0070710_1089324713300005437Corn, Switchgrass And Miscanthus RhizosphereMAEPTYEELKARLQDLEKQVETKKRSGTMEFKVSEKGGVS
Ga0070741_1176665413300005529Surface SoilMTEPSYEELKARVAELEKQAGRRQKGTLEFKVGEK
Ga0070735_1073511613300005534Surface SoilMTEPTYEELKARLAAMEKQAGRRTGSLEFRVSEKG
Ga0070761_1052535013300005591SoilMTEPSYEELKARLADLEKQVDTKKKSGVMEFRVSEKGGVS
Ga0070761_1071701313300005591SoilMSEPTYEELKARLSQLEKEVETKKRSGDLIFKVGEKG
Ga0070762_10000326173300005602SoilMSEPTYEELKAKLSQLEKEVEIKKRSGDLIFKVGEKGGVS
Ga0066903_10549602213300005764Tropical Forest SoilMSEPSYEELKARLAELEKQAETRKRTGAIEFRVSEK
Ga0068862_10026865723300005844Switchgrass RhizosphereMSEPTYEELKAKLSQLEKQVENKKRSGAMEFRVSE
Ga0070766_1038733613300005921SoilMSEPTYEELKARLSQLEKEVEVKKRSGDLIFKVGEKG
Ga0075030_10116524323300006162WatershedsMTEPTYDELKAKLQELEKQVETKKRSGTMEFRVSEKGGVS
Ga0070716_10146079213300006173Corn, Switchgrass And Miscanthus RhizosphereMTEPTYEELKARLAELEKQQGTRRSGSLEFRIGEK
Ga0075014_10040393223300006174WatershedsMTEPTYEELKARLQDLEKQVETKKRSGTMEFKVSEKG
Ga0075021_1111449823300006354WatershedsMTEPSYEELKARLADLEKQVETKKRSGAVEFRVSEKGGVS
Ga0075521_1004093643300006642Arctic Peat SoilMAEPSYEELKARVAELEKTQGRKRGSLEFKVSEKG
Ga0079220_1176680113300006806Agricultural SoilMAEPTYEEFKAKLAEMEKQGGSKRSGSLEFRVGEK
Ga0075433_1172427013300006852Populus RhizosphereMSEPTYEELKAQLAALQKQSGQKRSGSLDFRVGEKG
Ga0075434_10168212613300006871Populus RhizosphereMAEPSYEELKARLAELESQQGRQRSGSLEFRVGEK
Ga0075426_1100770023300006903Populus RhizosphereMTEPSYEELKARITELVKQGGRRQKGNLEFKVGEEG
Ga0066793_1087537113300009029Prmafrost SoilMAEPSYDELKAKVAELEKQQARKRSGPLEFRVSEKGAVSVYGMG
Ga0066793_1089376923300009029Prmafrost SoilMAEPSYEELKARVAELEKTQGRKRGSLEFKVSEKGGMS
Ga0099829_1082666823300009038Vadose Zone SoilMAEPTYEELKARVAELEKQKTLGSLQFRVGDKGGV
Ga0099828_1004728443300009089Vadose Zone SoilVTEPTYEELKARLTDLEKQVEAKKRTGAIEFRVSEK
Ga0105240_1165684023300009093Corn RhizosphereMAEPTYEELKARLAELEKHGTTRRTGSLDFRVSEK
Ga0075423_1116448433300009162Populus RhizosphereMPEPTYEELKARLAELQKQGATRSGSLEFRVSEKG
Ga0116134_108943813300009764PeatlandMTEPSYEELKARLADLEKQVETKKRSGAIEFRVSEK
Ga0116223_1046610223300009839Peatlands SoilMSEPSYEELKAKLAQLEKEVETKKRSGDLIFKVGEKGGV
Ga0126373_1095756623300010048Tropical Forest SoilMAEPTYEELKAKLAQLEKEAETKKRSGDLIFKVGEKG
Ga0126373_1296393813300010048Tropical Forest SoilMAEPTYEELKAKLAQLEKEVETKKRSGDLIFKVGEK
Ga0074044_1058799433300010343Bog Forest SoilMSEPTYDELKARLADLEKQVEGKKRSGAMEFRVSEKGGV
Ga0074044_1092286413300010343Bog Forest SoilMSEPTYEELKAKLSQLEKEVETKKRSGDLIFKVGEKGGVSV
Ga0134126_1241294813300010396Terrestrial SoilMSEPTYEELKARLAELEKQGPKRSGSLEFRVSEKG
Ga0134121_1259721213300010401Terrestrial SoilMPEPTYEELKARLSELEKQGPRRTGSLEFRVSEKGGV
Ga0137389_1087286013300012096Vadose Zone SoilMAEPTYEELKARLAELAKQTAGRQARSLEFRVSEKGG
Ga0137363_1095591013300012202Vadose Zone SoilMSEPTYEELKAQLEQAQKQLGSKKSGALDFRVGEKG
Ga0137399_1133154023300012203Vadose Zone SoilMSEPTYEELKARLSQLEKEVEVKKRSGDLIFKVGE
Ga0150984_11976223413300012469Avena Fatua RhizosphereMSEPSYEELKAKVAELEKKQTRQRSGALEFRVSEKG
Ga0137413_1182181123300012924Vadose Zone SoilMSEPTYEELKARLSQLEKEKGPKRTGSLEFRVGEK
Ga0134110_1028983113300012975Grasslands SoilMSEPTYEELKARLAELEKQGQRRSGSLEFRVGEKG
Ga0157370_1091100013300013104Corn RhizosphereMADPTYEEMKARLAELEKQVATKRTGSLEFRVSEKGG
Ga0157375_1359735913300013308Miscanthus RhizosphereMSEPTYEELKAQLAALQKQSGQKRSGTLDFRVGEKG
Ga0181526_1095473613300014200BogMTEPSYEELKARLADLEKQVETKKRSGAIEFRVSEKGGVS
Ga0181522_1014794913300014657BogLTEPTYDELKAKLQELEKQVETKKRSGVMEFRVSEKGGVSVY
Ga0137405_108339033300015053Vadose Zone SoilMTEPTYEELKAKLSQLEKEVETKKRSGDLIFKVGE
Ga0137405_119689213300015053Vadose Zone SoilMSEPSYEELKAKVAELEKQGPKRTGAMEYSASAKKAASA
Ga0137405_125394713300015053Vadose Zone SoilMTEPTYEELKAKLSQLEKEVETKKRSGDLIFKRSGD
Ga0132257_10304001223300015373Arabidopsis RhizosphereMSEPSYEELKARLADLEKQVETKKRSGAMEFRVSEKG
Ga0187853_1007978513300017940PeatlandMSEPSYEELKARLSQLEKEVETKKRSGDLIFKVGEK
Ga0187853_1029571113300017940PeatlandMTEPTYEELKARLADLEKQAETKKRSGAIEFRVSEK
Ga0187819_1048277613300017943Freshwater SedimentMTEPTYEELKAKLQELEKQVETKKRSGAMEFRVSEKGG
Ga0187847_1087114523300017948PeatlandMSEPTYEELKARLSQLEKEVETKKRSGDLIFKVGEKGGV
Ga0187817_1059874013300017955Freshwater SedimentMSEPTYEELKARLSQLEKEVETKKRSGDLIFKVGEKGGVS
Ga0187817_1075292713300017955Freshwater SedimentMAEPTYEELKAKLAELEKQGGTRRTGSLEFRVGEK
Ga0187779_1012257933300017959Tropical PeatlandMTEPSYEELKARLADLEKQVEAKKRGGALEFRVSE
Ga0187779_1036058813300017959Tropical PeatlandMSEPTYEELKARLAELEKKPGGSRRPGQLEFRVGEK
Ga0187783_1040353013300017970Tropical PeatlandMPEPTYEELKAKLAELEKQAQGRKRGNVDFKVSEKGGV
Ga0187876_120995913300018003PeatlandMAEPTYEELKARLSQLEKEVETKKRSGDLIFKVGEKGGV
Ga0187805_1020486223300018007Freshwater SedimentMAEPTYEELKARLAQLEKQVETKKRVGVLDFKVGEKG
Ga0187873_135230023300018013PeatlandMTEPSYEELKARLSQLEKEVETKKRSGDLIFKVGE
Ga0187886_123927523300018018PeatlandMSEPSYEELKARLSQLEKEVETKKRSGDLIFKVGEKGGVSVY
Ga0187857_1005049533300018026PeatlandMSEPSYEELKARLSQLEKEVETKKRSGDLIFKVGEKG
Ga0187869_1014437813300018030PeatlandMTEPSYEELKARLADLEKQVQTKKKVGVIDFRVSEKGGV
Ga0187867_1005335333300018033PeatlandMTEPSYEELKARLADLEKQVETKKRSGAIEFRVSEKGGVSV
Ga0187784_1065744123300018062Tropical PeatlandMSEPTYDELKSRVQELEKQQVQRRSGSLEFRIGEKGG
Ga0187769_1002449433300018086Tropical PeatlandMTEPTYEELKARLSQLEKEVETKKRSGDLIFKVGEKGGVS
Ga0187769_1024031413300018086Tropical PeatlandMAEPSYDELKARLQELEKQVESKKRSGAMEFRVSEKGGVS
Ga0187770_1031360123300018090Tropical PeatlandMPEPTYDELKARLQELEKQVETKKRTGAIEFRVSEKGGVSV
Ga0066662_1014027213300018468Grasslands SoilMAEPTYEELKARLSELEKQQGTRRSGSLEFRVGEK
Ga0182025_124522913300019786PermafrostMTEQTYEELKARLSQLEKEAETKKRSGDLIFKVGEKG
Ga0182031_138632763300019787BogMTEPSYEELKARLADLEKQVETKKKVGVIDFRVSEKVG
Ga0210404_1047698623300021088SoilMSEPTYEELKAKLSQLEKEVETKKRSGDLIFKVGEKG
Ga0210405_1042213013300021171SoilMTEPTYEELKARLTDLEKQVETKKRSGAMEFRVSEKGGVS
Ga0210385_1010779733300021402SoilMAEPTYEELKAKLSQLEKEVETKKRSGDLIFKVGEKGGVS
Ga0210385_1086786623300021402SoilMSEPSYDELKARLQELEKQVETKKRSGSMEFKVSEKGG
Ga0210397_1045092513300021403SoilMAEPTYEELKAKLSQLEKEVETKKRSGDLIFKVGEKGGV
Ga0210394_1175883713300021420SoilMTEPSYEELKARLADLEKQVETKKKSGAMEFRVSEKGG
Ga0210384_1066507633300021432SoilMSEPTYEELKARLSQLEKEVEVKKRSGDLIFKVGEKGGVS
Ga0210409_1073617413300021559SoilMTEPTYEELKARLAELEKQGPRRTASMEFRVSEKGGV
Ga0126371_1253093513300021560Tropical Forest SoilTNSEGVRIMAEPSYEELKAKLAQLEKEVETKKRSGDLIFKVGEKL
Ga0224546_101223413300022515SoilMSEPTYEELKARLSQLEKEVETKKRSGDLIFKVGEKGGVSVY
Ga0212123_1049855923300022557Iron-Sulfur Acid SpringMTEPTYEELKARLSQLEKEVETKKRSGDLIFKVGEKGG
Ga0224571_10830123300022734RhizosphereMSEPSYEELKARLSQLEKEVETKKRSGDLIFKVGEKGGV
Ga0247686_100265513300024177SoilMSEPSYEELKAKLAELEKQQGTRRTGALEFRVGEK
Ga0224568_103357623300024220Plant LitterMTEPSYEELKARLSQLEKEVETKKRSGDLIFKVGEKGGVS
Ga0247680_106731533300024246SoilMAEPTYEELKARLSELEKQGTRRTGSLEFRAASAART
Ga0208689_109327013300025459PeatlandMTEPSYEELKARLADLEKQVETKKRSGAIEFRVSE
Ga0208188_100420453300025507PeatlandMTEPTYEELRARLADLEKQVETKKRSGAIEFRVSEK
Ga0207665_1102962923300025939Corn, Switchgrass And Miscanthus RhizosphereMAEPTYEEMKARLAELEKQVATKRTGSLEFRVSEKGG
Ga0208532_100288213300026011Rice Paddy SoilMAEPTYEELKAKLAQLEKEVETKKRSGDLIFKVGEKGG
Ga0207676_1092345513300026095Switchgrass RhizosphereVAEPTYEELKARLEQLEKQGPKRTGNLEFRVGEKGGV
Ga0209266_129628213300026327SoilMPEPSYEELKARLAELEKQVDTRKRSGSLEFKVSEKG
Ga0257172_106307313300026482SoilVTEPTYEELKARLTDLEKQVEAKKRTGAIEFRVSEKGGVSV
Ga0257156_108765933300026498SoilMTEPTYEELKARLATLEKQADKKRSGTLEFRVGEK
Ga0209157_137538423300026537SoilMAEPSYEELKARVAELEKQGPGRRSGQLEFRIGEKGG
Ga0209056_1006466343300026538SoilMSEPSYEELKAQLAQLQKQSGSKRSGTLDFRVGEKG
Ga0179587_1034907023300026557Vadose Zone SoilMSEPSYEELKARLADLEKQVETKKRSGTMEFKVSEKGG
Ga0207761_110763913300027516Tropical Forest SoilMSEPSYDELKARLAQLEKQVDAKKRSGNLEFRVSEKGG
Ga0209331_107506923300027603Forest SoilMTEPTYEELKARLTDLEKQVETRKRSGAMEFRVSEKGGV
Ga0209447_1012076813300027701Bog Forest SoilMSEPTYEELKARLSQLEKEVDTKKRSGDLIFKVGEKGG
Ga0209038_1024887613300027737Bog Forest SoilMSEPTYEELKARLSQLEKEVDTKKRSGDLIFKVGEKGGVSV
Ga0209655_1024113323300027767Bog Forest SoilMAEPTYEELKAQLEELKKQSPAKRSGALEFRVGEK
Ga0209180_1026003413300027846Vadose Zone SoilMAEPSYEELKARLAELEKQGGARRTGQLDFRVGEK
Ga0209283_1092600023300027875Vadose Zone SoilMPEPTYEELKARLADLEKQGARRTGSLEFRVSEKGG
Ga0209275_1012000223300027884SoilMAEPSYEELKAQLAELQKQSGSRRTGALDFRVGEKG
Ga0209624_1061839523300027895Forest SoilMSEPSYEELKAQLAELKKQSGNRRTGALDFRVGEKG
Ga0268265_1024921023300028380Switchgrass RhizosphereMSEPTYEELKAKLSQLEKQVENKKRSGAMEFRVSEKGGVS
Ga0302222_1002217813300028798PalsaMSEPTYEELKAKLSQLEKEVETKKRSGDLIFKVGEK
Ga0302154_1055020113300028882BogMSEPSYEELKARLSQLEKEVEIKKRTGELIFKVGEKGGV
Ga0311329_1087591913300029907BogMAEPTYEELKAKLSQLEKEVETKKRSGDLIFKVGE
Ga0302275_1047280223300030518BogMTEPSYEELKARLADLEKQVDTKKKTGAMEFRVSEKGGV
Ga0302309_1023984313300030687PalsaMTEPSYEELKARLADLEKQVETKKRSGAMEFRVSEK
Ga0075404_1122362223300030842SoilMSEPSYEELKAQLEQAQKQLGAKKSGTLDFRVDEKGGV
Ga0075388_1155095623300030848SoilMTEPTYEELKARLSDLEKQVETKKRSGVMEFRVSEKGGVS
Ga0073994_1192349723300030991SoilMSEPSYEELKARLSQLEKEVEVKKRSGDLIFKVGEKGGVSV
Ga0073994_1207692713300030991SoilMAEPSYEELKAKIAELEKKGSGRRTGALEFRVGEK
Ga0302180_1057340923300031028PalsaMTEPSYEELKARLADLEKQVETKKKTGVIDFRVSEKGGVSVY
Ga0170834_10943617713300031057Forest SoilMAEPSYEELKARLAELEKQKPGHRTGQLDFRVGEKG
Ga0170823_1274455013300031128Forest SoilMAEPSYEELKAKLAQLEKEVETKKRSGDLIFKVGEKGGVSVY
Ga0265325_1007966713300031241RhizosphereMTEPSYEELKARLQDLEKQVETKKRSGAMEFRVSEKGGV
Ga0310915_1120589413300031573SoilMAEPTYDELKAKLAQLEKEVETKKRSGDLIFKVGEKGGVS
Ga0310686_11592406913300031708SoilMTEPSYEELKARLSQLEKEVETKKRSGDLIFKVGEKGGVSV
Ga0307476_1072203833300031715Hardwood Forest SoilMSEPTYEELKARLSQLEKEVETKKRSGDLIFKVGEKGGVSV
Ga0307477_1042310313300031753Hardwood Forest SoilMAEPSYEELKAKLAQLEKEVETKKRSGDLIFKVGEKG
Ga0307475_1137282023300031754Hardwood Forest SoilMAEPTYEELKAKLAELEKQQGPRRTGSQEFRVGEK
Ga0302319_1055938613300031788BogMTEPSYEELKARLADLEKQVDTKKKTGAMEFRVSEK
Ga0302319_1062981723300031788BogMAEPSYEELKAKVAELEKQTQGRKRGSLDFKVSEK
Ga0310917_1023080633300031833SoilMAEPTYDELKAKLAQLEKEVETKKRSGDLIFKVGEKGGV
Ga0306921_1120016113300031912SoilMAEPSYEELKARVEELEKSQARKRGSLEFRVSEKGGLS
Ga0310916_1104509813300031942SoilMAEPTYDELKAKLAQLEKEVETKKRSGDLIFKVGEKGG
Ga0307479_1002922543300031962Hardwood Forest SoilMAEPSYEELKAKLAQLEKEVETKKRSGDLIFKVGEKGGVSV
Ga0308176_1166969823300031996SoilMSEPSYDELKAKLAELEKQVAGKRSGNLDFRVSEKGAVS
Ga0307472_10187485423300032205Hardwood Forest SoilMAEPSYEELKAKLAQLEKEVETKKRSGDLIFKVGEKGGVS
Ga0335079_1134795423300032783SoilMPEPSYDELKAKLAELEKQVQGRKRGVIDFKVSEKGGMSVY
Ga0335080_1088742623300032828SoilMSEPTYEELKAKLAQMEKEKEGRRSGSLEFRVGEK
Ga0334792_024282_3_1073300033888SoilMSEPTYEELKAKLSQLEKEVETKKRSGDLIFKVGE


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.