Metagenome / Metatranscriptome Family F054212

Basic Information
Family ID	F054212
Family Type	Metagenome / Metatranscriptome
Number of Sequences	140
Average Sequence Length	60 residues
Representative Sequence	MSVLQPHPMRGASLLLVHCAAVVDERESAYSRLEHELGGELARLLVFALTGPQGRRGSSSP
Number of Associated Samples	114
Number of Associated Scaffolds	140

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	58.57 %
% of genes near scaffold ends (potentially truncated)	25.00 %
% of genes from short scaffolds (< 2000 bps)	87.14 %
Associated GOLD sequencing projects	110
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (95.714 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (7.143 % of family members)
Environment Ontology (ENVO)	Unclassified (27.857 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.000 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92 1FACENCA_695970 2B3_v_00705350 3Bog_all_C_03088480 4L02_03045040 5INPhiseqgaiiFebDRAFT_1006604594 6JGI10216J12902_1002214072 7A20PFW1_10515172 8A20PFW1_13244902 9A20PFW1_13518173 10A3PFW1_102020972 11A3PFW1_105346142 12A1565W1_109562182 13A10PFW1_109068997 14C688J35102_1190700572 15C688J35102_1199542922 16C688J35102_1202563762 17C688J35102_1205944391 18Ga0063455_1007241901 19Ga0063455_1007325722 20Ga0062589_1016641282 21Ga0062591_1017475351 22Ga0066688_109094981 23Ga0066678_104512972 24Ga0070658_100283877 25Ga0070658_107843802 26Ga0070683_1009678902 27Ga0070680_1001220442 28Ga0070680_1011913511 29Ga0068868_1005985732 30Ga0070660_1011623142 31Ga0070714_1021113992 32Ga0070713_1006715803 33Ga0070713_1008681512 34Ga0070710_107992502 35Ga0070708_1002166353 36Ga0070741_100030148 37Ga0070741_110214422 38Ga0070741_110402193 39Ga0070739_1000108432 40Ga0070739_100053862 41Ga0070704_1007910392 42Ga0068855_1007542862 43Ga0066694_104525592 44Ga0066702_100007978 45Ga0066903_1010525562 46Ga0068851_105231141 47Ga0070712_1015469891 48Ga0074053_114905932 49Ga0075522_101404993 50Ga0079221_101394182 51Ga0075433_103774853 52Ga0075425_1001038055 53Ga0075426_107590722 54Ga0079219_108258522 55Ga0075435_1013175622 56Ga0099829_106549402 57Ga0105245_129326312 58Ga0105242_110666282 59Ga0105242_122323671 60Ga0134065_104292031 61Ga0134063_103827882 62Ga0134125_102816742 63Ga0105239_131378391 64Ga0134122_103776301 65Ga0134121_113989292 66Ga0120146_10579302 67Ga0120159_11320442 68Ga0137389_116161333 69Ga0137382_101778843 70Ga0137399_102842622 71Ga0150985_1005176652 72Ga0150984_1126811572 73Ga0150984_1176076992 74Ga0150984_1189791242 75Ga0164300_103066362 76Ga0164298_101198203 77Ga0164299_108091732 78Ga0164301_102108461 79Ga0126369_100951234 80Ga0168317_10298842 81Ga0157369_114366821 82Ga0157374_111230912 83Ga0157372_107708893 84Ga0157377_117439692 85Ga0157376_124721521 86Ga0137411_10388722 87Ga0132258_111552452 88Ga0132258_118290483 89Ga0132258_121078282 90Ga0132258_135315872 91Ga0132257_1037929812 92Ga0187779_102897512 93Ga0066667_117467382 94Ga0066667_117789741 95Ga0066662_100078338 96Ga0066662_115153422 97Ga0193751_11088371 98Ga0197907_112791942 99Ga0206356_100994772 100Ga0206349_16521632 101Ga0206353_109995562 102Ga0193699_102321362 103Ga0193694_10309242 104Ga0222622_109002751 105Ga0222622_111228521 106Ga0179589_103887682 107Ga0247666_10644652 108Ga0247668_10439331 109Ga0207705_107193151 110Ga0207707_100124256 111Ga0207695_115961402 112Ga0207693_113118372 113Ga0207652_106449883 114Ga0207652_115655351 115Ga0207664_107049833 116Ga0207679_115993531 117Ga0209240_11383272 118Ga0209471_12903402 119Ga0209808_13189511 120Ga0209073_100248522 121Ga0209810_100033817 122Ga0209810_100048117 123Ga0137415_100992563 124Ga0265326_100436582 125Ga0265336_101487242 126Ga0307279_101235152 127Ga0307504_101573061 128Ga0265330_101077642 129Ga0170819_165628842 130Ga0308175_1012694841 131Ga0308175_1014241212 132Ga0308174_119371281 133Ga0308173_100252602 134Ga0307470_113049782 135Ga0335070_109159862 136Ga0310811_113489771 137Ga0370501_0011910_22_207 138Ga0372943_0009676_646_831 139Ga0372943_1170670_2_160 140Ga0372946_0521458_242_430
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92 1FACENCA_695970 2B3_v_00705350 3L02_03045040 4INPhiseqgaiiFebDRAFT_1006604594 5JGI10216J12902_1002214072 6A20PFW1_10515172 7A20PFW1_13518173 8A3PFW1_102020972 9A10PFW1_109068997 10C688J35102_1190700572 11C688J35102_1205944391 12Ga0066678_104512972 13Ga0070658_100283877 14Ga0070680_1001220442 15Ga0070714_1021113992 16Ga0070741_100030148 17Ga0070741_110214422 18Ga0070739_100053862 19Ga0068851_105231141 20Ga0070712_1015469891 21Ga0074053_114905932 22Ga0079219_108258522 23Ga0134065_104292031 24Ga0150985_1005176652 25Ga0150984_1176076992 26Ga0126369_100951234 27Ga0157376_124721521 28Ga0187779_102897512 29Ga0066667_117467382 30Ga0066667_117789741 31Ga0207693_113118372 32Ga0209808_13189511 33Ga0307504_101573061 34Ga0265330_101077642 35Ga0170819_165628842 36Ga0308175_1012694841 37Ga0308175_1014241212 38Ga0335070_109159862 39Ga0372943_1170670_2_160
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60. 1Ga0066688_109094981 2FACENCA_695970 3Bog_all_C_03088480 4L02_03045040 5JGI10216J12902_1002214072 6A20PFW1_10515172 7A1565W1_109562182 8A10PFW1_109068997 9C688J35102_1199542922 10C688J35102_1205944391 11Ga0063455_1007325722 12Ga0070658_100283877 13Ga0070680_1001220442 14Ga0068868_1005985732 15Ga0070714_1021113992 16Ga0070741_100030148 17Ga0070741_110214422 18Ga0070741_110402193 19Ga0070739_1000108432 20Ga0070739_100053862 21Ga0066903_1010525562 22Ga0068851_105231141 23Ga0070712_1015469891 24Ga0074053_114905932 25Ga0079219_108258522 26Ga0105245_129326312 27Ga0134065_104292031 28Ga0134063_103827882 29Ga0150984_1176076992 30Ga0150984_1189791242 31Ga0157369_114366821 32Ga0157374_111230912 33Ga0137411_10388722 34Ga0132258_118290483 35Ga0132258_135315872 36Ga0187779_102897512 37Ga0066667_117467382 38Ga0066667_117789741 39Ga0247666_10644652 40Ga0207693_113118372 41Ga0207664_107049833 42Ga0137415_100992563 43Ga0265326_100436582 44Ga0307504_101573061 45Ga0265330_101077642 46Ga0170819_165628842 47Ga0308175_1012694841 48Ga0308175_1014241212 49Ga0308173_100252602 50Ga0335070_109159862 51Ga0372943_1170670_2_160 52Ga0372946_0521458_242_430
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.58% β-sheet: 0.00% Coil/Unstructured: 67.42%
Feature Viewer
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Pfam ID	Name	% Frequency in 140 Family Scaffolds
PF00156	Pribosyltran	9.29
PF03979	Sigma70_r1_1	1.43
PF02880	PGM_PMM_III	1.43
PF04542	Sigma70_r2	1.43
PF04246	RseC_MucC	0.71
PF00805	Pentapeptide	0.71
PF07883	Cupin_2	0.71
PF12850	Metallophos_2	0.71
PF13240	zinc_ribbon_2	0.71
PF13673	Acetyltransf_10	0.71

COG ID	Name	Functional Category	% Frequency in 140 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	2.86
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	1.43
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	1.43
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.43
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.43
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.43
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.71
COG1546	Nicotinamide mononucleotide (NMN) deamidase PncC	Coenzyme transport and metabolism [H]	0.71
COG2309	Leucyl aminopeptidase (aminopeptidase T)	Amino acid transport and metabolism [E]	0.71
COG3086	RseC, positive regulator of sigma E activity	Signal transduction mechanisms [T]	0.71

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.71 %
Unclassified	root	N/A	4.29 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.71 %
Unclassified	root	N/A	4.29 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.71 %
Unclassified	root	N/A	4.29 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	90.71 %
Unclassified	root	N/A	4.29 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	90.71 %
Unclassified	root	N/A	4.29 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.71 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	7.14 %
Unclassified	root	N/A	4.29 %

Name	Rank	Taxonomy	Distribution
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3.57 %
Unclassified	root	N/A	4.29 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.71 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	2.86 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.71 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3.57 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	2.86 %
Unclassified	root	N/A	4.29 %

Scaffold	Taxonomy	Length	IMG/M Link
2035918004\|FACENC_F56XM5W01DYWQZ	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
2124908039\|B3_v_NODE_74045_len_734_cov_5_550409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	784	Open in IMG/M
2140918008\|ConsensusfromContig231499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1726	Open in IMG/M
2170459007\|GJ61VE201CRNP9	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	516	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100660459	All Organisms → cellular organisms → Bacteria	3034	Open in IMG/M
3300000956\|JGI10216J12902_100221407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	989	Open in IMG/M
3300001532\|A20PFW1_1051517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	971	Open in IMG/M
3300001532\|A20PFW1_1324490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1059	Open in IMG/M
3300001532\|A20PFW1_1351817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1182	Open in IMG/M
3300001535\|A3PFW1_10202097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	646	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.71%
Host-Associated	Host-Associated	24.29%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	1.43%
Plants	Host-Associated → Plants	24.29%
Terrestrial	Environmental → Terrestrial	74.29%

Habitat	Taxonomy	Distribution
Geologic	Environmental → Terrestrial → Geologic	0.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.86%
Sediment	Environmental → Aquatic → Sediment	1.43%
Soil	Environmental → Terrestrial → Soil	73.57%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.14%
Loam	Environmental → Terrestrial → Soil → Loam	15.71%
Mine	Environmental → Terrestrial → Geologic → Mine	0.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.29%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.43%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.14%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.86%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.71%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.29%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	8.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.29%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.43%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.43%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.57%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.71%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.14%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.71%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.29%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.57%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.43%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.43%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.43%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.71%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.57%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.43%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.43%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.14%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.14%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.71%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	6.43%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.43%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.71%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.71%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.71%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.00%
Weathered Mine Tailings	Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings	0.71%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035918004	Soil microbial communities from sample at FACE Site 2 North Carolina CO2-	Environmental	Open in IMG/M
2124908039	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Bog Site B4	Environmental	Open in IMG/M
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001532	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-PF 12A)- 1 week illumina	Environmental	Open in IMG/M
3300001535	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M

Showing 1 to 10 of 114 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCA_695970	2035918004	Soil	MERIEMQSETPQTMRGAGLLLAHCHPVLDERPSAYERLQERVGDDLARLLVFALAGPQGRRGSSSP
B3_v_00705350	2124908039	Soil	MSLLQPQPMRGAELLLVHCAAVSDDRPSAYDRLEQEIGGKLAHLLVFALVGPQGRRGSSS
Bog_all_C_03088480	2140918008	Soil	MSLLQPQPMRGAELLLVHCAAVSDDRPSAYDRLEQEIGGKLARLLVFALVGPQGRRGSSS
L02_03045040	2170459007	Grass Soil	MDVQPHTSRGSGLLLIHCAVVVDDRQPAYARLEQAIGGELARLLVFALAGRQGRRGSSSP
INPhiseqgaiiFebDRAFT_1006604594	3300000364	Soil	MSAVQPQPLRGARLLLVHCAAVVDERPSAFTRLEQQLGGELAHLLVRALASPQGVRGSSSP*
JGI10216J12902_1002214072	3300000956	Soil	MSVLPPQPQRGASLLLAHCSRLPMERESAYTRLEHELGGDLTRLLVFALARPQGRRGSSSP*
A20PFW1_10515172	3300001532	Permafrost	MWSLAAPPIPELVPMTALKPHPHRGVELLLVHCAAASHERPSAYARLERELGGELARLLVSALVGPQGRRGSSSP*
A20PFW1_13244902	3300001532	Permafrost	MSVLQPQPMRGAALLLVHCSAVADERESAYTRLEHALGGELARLLVFALSGAQAGRRGSSSP*
A20PFW1_13518173	3300001532	Permafrost	MSVLQPQPMRGAALLLVHCSAVADERESAYTRLEHKLGDELARLLVFALSGAQADRRGSSSP*
A3PFW1_102020972	3300001535	Permafrost	MPALTPHPHRGVELLLVHCAAVSNERPSAYARLEQALGGELAQMLVCALVGPQGRRGS
A3PFW1_105346142	3300001535	Permafrost	MSVLQPQPMRGAALLLVHCSAVADERESAYTRLEHKLGGDLARLLVFALSGAQTDRRGSSSP*
A1565W1_109562182	3300001536	Permafrost	MRGLDEPSISEQLQMPALTPHPHRGVELLLVHCAAVSNERPSAYARLEQALGGELAQMLVCALVGPQGRRGSSSP*
A10PFW1_109068997	3300001538	Permafrost	MNKLAVVFPIQPYPHRGAGLLLSRCAALSGERPSAYQRLEHAIGDELARLLVFALSGSQGRRGSSSP*
C688J35102_1190700572	3300002568	Soil	MMKPQTSRGASLLLMHCNAVVDDRPTAYARLEGEIGGDLARLLVFALVGPQGRRGSSSP*
C688J35102_1199542922	3300002568	Soil	MNVQPHTSRGAGLLLVHCAAVAEDRQSAYVRLEEALGSDLARLLVFALVGRHGRRGSSSP
C688J35102_1202563762	3300002568	Soil	MSVLPPHPPRGASLLLAHCSRLPSERESAYTRLEHEVGGDLARLLVFALSRPQGRRGSSSP*
C688J35102_1205944391	3300002568	Soil	MTLFKPQPLRGDGLLLVHCSDAVDDRPPAYARLEGLIGGELARLLVFALIGPQGR
Ga0063455_1007241901	3300004153	Soil	MMKPQTSRGASLLLMHCNAVVDDRPTAYARLEGEIGGDLARLLVFALVGPQGR
Ga0063455_1007325722	3300004153	Soil	MSAVQPQPLRGAGLLLVHCAAVFDERPSAFSRLEQKLGGELARLLVHALASPQGVRGSSSP*
Ga0062589_1016641282	3300004156	Soil	MSVLQPQPMRGAALLLVHCSAVADERESAYTRLEHKLGGELARLLVVALSGAQTGRRGSSSP*
Ga0062591_1017475351	3300004643	Soil	MNFQPHTSRGAGLLLVHCATFSEEREPAYARLEEAIGGELAQLLVAALAGPQGRRGSSSP
Ga0066688_109094981	3300005178	Soil	MSVLQPHPMRGASLLLVHCAAVVDERESAYSRLEHELGGELARLLVFALTGPQGRRGSSSP*
Ga0066678_104512972	3300005181	Soil	LLLVHCAAVVDGRESAYTRLEHELGGELARLLVFALTGPQGRRGSSSP*
Ga0070658_100283877	3300005327	Corn Rhizosphere	MSVVQPHQIRGAALLLRHCAVLDEGRPSAYDRLEEQLGDELARRLVRALVGPQGRRGSSSP*
Ga0070658_107843802	3300005327	Corn Rhizosphere	MSVLQPQPLRGAALLLVHCSAVADERESAYTRLEHKLGGELARLLVVALSGAQTGRRGSSSP*
Ga0070683_1009678902	3300005329	Corn Rhizosphere	MSIQPHTSRGAGLLLVHCAAVADDRQSAYTRLEQALGGDLARLLVFALAGRHGRRGSSSP
Ga0070680_1001220442	3300005336	Corn Rhizosphere	MSVFQPQPLRGAELLLVHCAAVSDERPSAFARLERELGGDVARKLICALVSPSYGRRGSSSP*
Ga0070680_1011913511	3300005336	Corn Rhizosphere	MSVLQPQPMRGAALLLVHCSAVADERESAYTRLERKLGGELARLLVVALSGAQTGRRGSSSP*
Ga0068868_1005985732	3300005338	Miscanthus Rhizosphere	MSIQPHTSRGAGLLLVHCADVVENRQSAYARLEQALGGELARLLVFALAGRQGRRGSSSP
Ga0070660_1011623142	3300005339	Corn Rhizosphere	MSVFQPQPLRGAELLLVHCAAVSDERPSAFARLEREFGGDVARKLICALVSPSYGRRGSSSP*
Ga0070714_1021113992	3300005435	Agricultural Soil	MSVAETQPERGDALLLVHCSAVNDERPSAYSRLEDEVGGELARLLVFALAGAHGRLGSSSP*
Ga0070713_1006715803	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSVLQPQPMRGAALLLVHCSAVTDERESAYTRLEHKLGGELARLLVGALSSAQTGRRGSSSP*
Ga0070713_1008681512	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSAVQPQPQRGAGLLLVHCAAVFDERPSAFSRLEQKLGGELAQLLVRALASPQGVRGSSSP*
Ga0070710_107992502	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MNVLQPQPMRGAALLLVHCSAVTDERESAYTRLEHKLGGELTRLLVVALSGAQTGRRGSSSP*
Ga0070708_1002166353	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSVLQPQPMRGAALLLVHCSAVTDERESAYVRLEHKLGGELARLLVVALSGAQTGRRGSSSP*
Ga0070741_100030148	3300005529	Surface Soil	MSIAEPHRLRGVDLLLVHCTAVTGERPKAYTRLEQAVGGELARLLVFALAGPQRTRGSSSP*
Ga0070741_110214422	3300005529	Surface Soil	MRSVAEPQPERGDTLLLLHCGLVEDERPPAYARLEDAVGDELARFLLYELTGAYGRRGSSSP*
Ga0070741_110402193	3300005529	Surface Soil	DALLLVHCAAVVDDRPSAYSRLEDEVGGELARLLLFALSGTHGRRGSSPP*
Ga0070739_1000108432	3300005532	Surface Soil	MSVAEPQPKRGDELLLVHCAAVVDERPSAYSRLEDEVGDELARLLLWELTDAYGRRGSSSP*
Ga0070739_100053862	3300005532	Surface Soil	MNVEPHPRGAGLLLLHCSPVAGDRRSAYTRLEEKLGGELARLLVCALARSQGRRGTSSP*
Ga0070704_1007910392	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MQSETPQTMRGAGLLLAHCHPVLDERPSAYERLQERVGDDLARLLVFALAGPQGRRGSSSP*
Ga0068855_1007542862	3300005563	Corn Rhizosphere	MSVLQPQPMRGAALLLVHCSAVTDERESAYTRLERKLGGELARLLVVALSGAQTGRRGSSSP*
Ga0066694_104525592	3300005574	Soil	MSVLNPQPQRGEGLLLVHCASVVDERPPAYSRLEGLIGGDLARLLVFALVGPQGRRGSSSP*
Ga0066702_100007978	3300005575	Soil	MSAVQPQPLRGAGLLLVHCAAVYDERPSAYSRLEQELGGELAQLLVRALASPQGVRGSSSP*
Ga0066903_1010525562	3300005764	Tropical Forest Soil	MSVLPPQPQRGVSLLLAHCFRTPTERESAYTRLEHELGGELTRLLVVALSSPQGRRGSSSP*
Ga0068851_105231141	3300005834	Corn Rhizosphere	DHLILVHCAAVGRDRPSAYARLVGKVGSELARLLLFALTGTHGRRGSSSP*
Ga0070712_1015469891	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSILETHPPRGDLLLLAHCAAVGDERPPAYARLERMLGGDLARLLVYALAAPQGRRGSSSP*
Ga0074053_114905932	3300006575	Soil	MKTDTPHMTARGAGLLLAHCHSVLEERPSAYTRLEERIGGDLARLLVFALAGPQGRRGSSSP
Ga0075522_101404993	3300006638	Arctic Peat Soil	MSVLQPQPMRGAALLLVHCSNVADERESASTRLERKLGGELARLLVFALTGAQAGRRGSSSP*
Ga0079221_101394182	3300006804	Agricultural Soil	MHDETPQTIRGAGLLLAHCHPVLHERPSAYERLQERVGDDLARLLVFALAGPQGRRGSSSP*
Ga0075433_103774853	3300006852	Populus Rhizosphere	MSVLPPQPQRGASLLLAHCSCLPMERESAYTRLEHELGGDLTRLLVFALARPQGRRGSSSP*
Ga0075425_1001038055	3300006854	Populus Rhizosphere	MSVLPRKPQRGASLLLAHCSCLPMERESAYTRLEHELGGDLTRLLVFALARPQGRRGSSSP*
Ga0075426_107590722	3300006903	Populus Rhizosphere	MSVLPPQPQRGASLLLAHCSRLPTERESAYTRLEHELGGDLTRLLVFALARPQGRRGSSSP*
Ga0079219_108258522	3300006954	Agricultural Soil	MNIEPQTFRGAGLLLAHCTAVADDREPAYARLEEALGGEFARLLVVALAGPQGRRGSSSP
Ga0075435_1013175622	3300007076	Populus Rhizosphere	ASLLLAHCSCLPMERESAYTRLEHELGGDLTRLLVFALARPQGRRGSSSP*
Ga0099829_106549402	3300009038	Vadose Zone Soil	MRGAALLLVHCSAVADERESAYTRLEHKLGGELARLLVYALSGAQAGRLGSSSP*
Ga0105245_129326312	3300009098	Miscanthus Rhizosphere	MSIQPHTSRGAGLLLVHCAAVADDRQPAYMRLEQALGGDLARLLVFALAGRHGRRGSSSP
Ga0105242_110666282	3300009176	Miscanthus Rhizosphere	MERIEMQSETPQTMRGAGLLLAHCHPLLDERPSAYERLQERVGDDLARLLVFALAGPQGRRGSSSP*
Ga0105242_122323671	3300009176	Miscanthus Rhizosphere	MNVQPHTSRGAGLLLFHCAAVAESRQSAYARLEQALGCELARLLVFALAGRQGRRGSS
Ga0134065_104292031	3300010326	Grasslands Soil	NVAMSVLNPQPQRGEGLLLVHCASVVDERPPAYSRLEGLIGGDLARLLVFARVGPQGRRGSSSP*
Ga0134063_103827882	3300010335	Grasslands Soil	MTLLKPHTSRGASLLLLHCNAVVDDRPNAYSRLETEIGGSLARLLVFALVGPQGRRGSSSP*
Ga0134125_102816742	3300010371	Terrestrial Soil	MERIEMQSETPQTMRGAGLLLAHCHPVLDERPSAYERLQERVGDDLARLLVFALAGPQGRRGSSSP*
Ga0105239_131378391	3300010375	Corn Rhizosphere	MSVLQPQPMRGAALLLVHCSAVTDERESAYTRLEHKLGGELARLLVVALSGAQAGRRGSSSP*
Ga0134122_103776301	3300010400	Terrestrial Soil	TMRGAGLLLAHCHPVLDERPSAYERLQERVGDDLARLLVFALAGPQGRRGSSSP*
Ga0134121_113989292	3300010401	Terrestrial Soil	MERIEMQSETPPTMRGAGLLLAHCHPVLDERPSAYERLQERVGDDLARLLVFALAGPQGRRGSSSP*
Ga0120146_10579302	3300011992	Permafrost	MRGAALLLVHCSAVADERESAYTRLEHKLGDELARLLVFALSGAQADRRGASSP*
Ga0120159_11320442	3300012014	Permafrost	MNKVAVVFPIQPYPHRGAGLLLSRCAALSGERPSAYQRLEHAIGDELARLLVFALSGSQGRRGSSSP*
Ga0137389_116161333	3300012096	Vadose Zone Soil	ILVTACEPIPELGLMSVLQPQPMRGAALLLVHCSAVADERESAYTRLEHKLGGELARLLVYALSGAQAGRLGSSSP*
Ga0137382_101778843	3300012200	Vadose Zone Soil	MSVLQPQPMRGAALLLVHCSAVTDERESAYTRLEDKLGGELARLLVVALSGAQAGRRGSSSP*
Ga0137399_102842622	3300012203	Vadose Zone Soil	MSVLQPQPTRGASLLLAHCAAVVDERESAFTRLEHALGGELARLLVFALTGPQGRRGSSSP*
Ga0150985_1005176652	3300012212	Avena Fatua Rhizosphere	MNVQPHTSRGAELLLVHCAAVAADRQPAYTRLEQALGGELARLLVFALAG
Ga0150984_1126811572	3300012469	Avena Fatua Rhizosphere	MTLFKPQPLRGDGLLLVHCSDAVDDRPPAYARLEGLIGGELARLLVFALIGPQG
Ga0150984_1176076992	3300012469	Avena Fatua Rhizosphere	EGTPIPVAGLMNVQPHTSRGAELLLVHCAAVAADRQPAYARLEQALGGELARLLVFALAGRQGRRGSSSP*
Ga0150984_1189791242	3300012469	Avena Fatua Rhizosphere	MTMMKPQTSRGASLLLMHCNAVVDDRPTAYARLEGEIGGDLARLLVFALVGPQGRRGSSSP*
Ga0164300_103066362	3300012951	Soil	MKTDTPHMTARGAGLLLAHCHSVLEERPSAYTRLEERIGGDLARLLVFALAGPQGRRGSSSP*
Ga0164298_101198203	3300012955	Soil	LLLVHCADVVENRQSAYARLEQALGGELARLLVFALAGRQGRRGSSSP*
Ga0164299_108091732	3300012958	Soil	MKTDTPHMTARGAGLLLAHCHSVLAERPSAYTRLEERIGGDLARLLVFALAGPQGRRGSSSP*
Ga0164301_102108461	3300012960	Soil	MSVLQPQPMRGAALLLAHCSAVAPRESAYTRLESKLGGELARLLVHALSGAQAGRR
Ga0126369_100951234	3300012971	Tropical Forest Soil	VSLLLAHCFRTPTERESAYTRLEHELGGELTRLLVVALSSPQGRRGSSSP*
Ga0168317_10298842	3300012982	Weathered Mine Tailings	MSVLQPQPVRGAALLLVHCSAVADGRESAYTRLEHKLGGELARLLVGALSGAQAGGRGSSSP*
Ga0157369_114366821	3300013105	Corn Rhizosphere	MSILKPQPQRGASLLLVHCAAVCDERPSAYSRLESLLGGDLARLLVFALVGPQGRRGSSSP*
Ga0157374_111230912	3300013296	Miscanthus Rhizosphere	MNVQPLTSRGAGLLLVHCATFSEEREPAYARLEEAIGGELAQLLVAALAGPQGRRGSSSP
Ga0157372_107708893	3300013307	Corn Rhizosphere	MSILKPQPQRGASLLLVHCAAVCDERPSAYSRLESLLGGDLARLLVFALVGPQGRRGSSAP*
Ga0157377_117439692	3300014745	Miscanthus Rhizosphere	MNVQPHTSRGAGLLLVHCATFSEEREPAYARLEEAIGGELAQLLVAALAGPQGRRGSSSP
Ga0157376_124721521	3300014969	Miscanthus Rhizosphere	GLLLVHCATFSEEREPAYARLEEAIGGELAQLLVAALAGPQGRRGSSSP*
Ga0137411_10388722	3300015052	Vadose Zone Soil	SVLQPQPTRGASLLLAHCAAVVDERESAFTRLEHALGGELARLLVFALTGPQGRRGSSSP
Ga0132258_111552452	3300015371	Arabidopsis Rhizosphere	MSIQPHTSRGAGLLLVHCAAVTDDRQPAYLRLEQALGGDLARLLVFALAGRQGRRGSSSP
Ga0132258_118290483	3300015371	Arabidopsis Rhizosphere	MDVQPHTSRGAGLLLSHCAAVAEGRQSAYARLEQALGGELARLLVFALAGRQGRRGSSSP
Ga0132258_121078282	3300015371	Arabidopsis Rhizosphere	MERIEMHDETPQTIRGAGLLLAHCHPVLHERPSAYERLQERVGDDLARLLVFALAGPQGRRGSSSP*
Ga0132258_135315872	3300015371	Arabidopsis Rhizosphere	MNVQPHTSRGAGLLLVHCADVVVDRPSAYVRLEQALGGELARLLVFALAGRQGRRGSSSP
Ga0132257_1037929812	3300015373	Arabidopsis Rhizosphere	MNVQPHTSRGAGLLLVHCADVVVDRPSAYVRLEQALGGELARLLIFALA
Ga0187779_102897512	3300017959	Tropical Peatland	MSEFDSQPARGTGLLLAHCAALGVERPSAFTRLEAALGDDFARMLVAALAGPQGRRGSSS
Ga0066667_117467382	3300018433	Grasslands Soil	MNVLQPHQRRGASLLLQHCAAVVDERESAYARLEHALGDDLARLLVFALSGPPRRPGQPPPWAGA
Ga0066667_117789741	3300018433	Grasslands Soil	ENTGSPIPEAAQMSVAEPQPERGDALLLVHCAAVPGERPSAYARLVDALGGDLARLLLFALSGSHGRRGSSSP
Ga0066662_100078338	3300018468	Grasslands Soil	MSAVQPQPLRGAGLLLVHCAAVYDERPSAYSRLEQELGGELAQLLVRALASPQGVRGSSS
Ga0066662_115153422	3300018468	Grasslands Soil	MSVLQPHPMRGASLLLVHCAAVVDERESAYARLEHELGGELARLLVFALTGPQGRRGSSS
Ga0193751_11088371	3300019888	Soil	MSVLQPQPMRGAALLLVHCSAVSDERESAYMRLERKLGGELTRLLVVALSGAQAGRRGSSSP
Ga0197907_112791942	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MSVFQPQPLRGAELLLVHCAAVSDERPSAFARLERELGGDVARKLICALVSPSYGRRGSSSP
Ga0206356_100994772	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MSVLQPQPMRGAALLLVHCSAVTDERESAYTRLERKLGGELARLLVVALSGAQTGRRGSSSP
Ga0206349_16521632	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	MSILKPQPQRGASLLLVHCAAVCDERPSAYSRLESLLGGDLARLLVFALVGPQGRRGSSS
Ga0206353_109995562	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MSVLQPQPMRGAALLLVHCSAVADERESAYTRLERKLGGELARLLVVALSGAQTGRRGSSSP
Ga0193699_102321362	3300021363	Soil	MSVLQPQPMRGAALLLVHCSAVTDERESAYTRLEHKLGGELARLLVVALSGAQAGRRGSSSP
Ga0193694_10309242	3300021415	Soil	MSIQPHTSRGAGLLLVHCAAVAENRQSAYARLEQALGGELARLLVFALAGRQGRRGSSSP
Ga0222622_109002751	3300022756	Groundwater Sediment	ARSLPSGICDARRPPIPVAGLMNVQPHTSRGAGLLLVHCAAVADDRQPAYARLEQALGGELARLLVFALAGRQGRRGSSSP
Ga0222622_111228521	3300022756	Groundwater Sediment	LLVHCAHMAENRPSAYARLEQALGGELARLLVFALAGRQGRRGSSSP
Ga0179589_103887682	3300024288	Vadose Zone Soil	MSVLQPQPMRGAALLLVHCSPVSVERESAYTRLEHKLGGELARLLVFALSGAQAGR
Ga0247666_10644652	3300024323	Soil	MSVLQPQPMRGAALLLVHCSAVSDERESAYTRLERKVGGELARLLVVALSGAHAGRRGSSSP
Ga0247668_10439331	3300024331	Soil	MSVLQPQPMRGAALLLVHCSAVTDERESAYTRLEHKLGGELARLLVGALSSA
Ga0207705_107193151	3300025909	Corn Rhizosphere	MSVLQPQPLRGAALLLVHCSAVADERESAYTRLEHKLGGELARLLVVALSGAQTGRRGSSSP
Ga0207707_100124256	3300025912	Corn Rhizosphere	MSVVQPHQIRGAALLLRHCAVLDEGRPSAYDRLEEQLGDELARRLVRALVGPQGRRGSSS
Ga0207695_115961402	3300025913	Corn Rhizosphere	MSVFQPQPLRGAELLLVHCAAVSDERPSAFARLERELGGDVARKLICALVSPSYGRRGSS
Ga0207693_113118372	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSPMPPHPARGAELLLVHCTAVPEARPSARTRLEQEIGEPLTRLLVSALAGPYGRRG
Ga0207652_106449883	3300025921	Corn Rhizosphere	QPHQIRGAALLLRHCAVLDEGRPSAYDRLEEQLGDELARRLVRALVGPQGRRGSSSP
Ga0207652_115655351	3300025921	Corn Rhizosphere	MSVVQPHQIRGAALLLRHCAVLDEGRPSAYDRLEEQLGDELARRLVRALVGPQGR
Ga0207664_107049833	3300025929	Agricultural Soil	MSVLQPQPTRGAGLLLVHCAAVVDERPSAYSRLEEQLGGELTRLLVLALSGPQGLRGSSS
Ga0207679_115993531	3300025945	Corn Rhizosphere	RPPIPLAGLMSIQPHTSRGAGLLLVHCAAVTDDRQPAYLRLEQALGGDLARLLVFALAGRQGRRGSSSP
Ga0209240_11383272	3300026304	Grasslands Soil	MSVLQPQPMRGAALLLVHCSAVADERESAYARLEHKLGSELARLLVVALSGAHAGR
Ga0209471_12903402	3300026318	Soil	MSVLQPHPMRGASLLLVHCAAVVDERESAYSRLEHELGGELARLLVFALTGPQGRRGSSS
Ga0209808_13189511	3300026523	Soil	VIRSLPPGILAVGGGPIPELGLMSVQPQPMRGANLLLAHCAAVVDERESAYNRLEHALGGELARLLVFALAGPQGRRGSSSP
Ga0209073_100248522	3300027765	Agricultural Soil	MHDETPQTIRGAGLLLAHCHPVLHERPSAYERLQERVGDDLARLLVFALAGPQGRRGSSS
Ga0209810_100033817	3300027773	Surface Soil	MNVEPHPRGAGLLLLHCSPVAGDRRSAYTRLEEKLGGELARLLVCALARSQGRRGTSSP
Ga0209810_100048117	3300027773	Surface Soil	MSVAEPQPKRGDELLLVHCAAVVDERPSAYSRLEDEVGDELARLLLWELTDAYGRRGSSS
Ga0137415_100992563	3300028536	Vadose Zone Soil	MSVLQPQPTRGASLLLVHCSAVVDGRESAYTRLEHELGGELARLLVFALTGPQGRPGSSS
Ga0265326_100436582	3300028558	Rhizosphere	MSVLEPQPLRGAALLLVHCSTFSDDRPSAYSRLEAKIGSPLTRLLVRALVGPQGRRGSSS
Ga0265336_101487242	3300028666	Rhizosphere	MSVFQPQPMRGAELLLVHCAAVSDDRPSAYDRLEQEIGGKLARLLVFALVGPQGRRGSSS
Ga0307279_101235152	3300028709	Soil	MSVLQPQPMRGAALLLVHCSAVADERESAYTRLEHKLGGELARLLVVALSGAQTGRRGSSSP
Ga0307504_101573061	3300028792	Soil	MSVLQPHPLRGAALLLVHCAPVSEERESAHTRLERALGGDFARLLVSALSGTRRADARQH
Ga0265330_101077642	3300031235	Rhizosphere	MSVLEPQPLRGAALLLVHCSTVADNRPSAYSRLEAKIGGPLTRMLVRALVGPQGLRGSSS
Ga0170819_165628842	3300031469	Forest Soil	RGAALLLVHCGAVADDRPSAYSRLEELIGGPLTRLLVCALVGPQGRRGSSSP
Ga0308175_1012694841	3300031938	Soil	MDVFEPQPLRGSDLLLVHCAAVASDGPTAYNRLEQELGGELARLLVYALCGPQGRGRRAIAA
Ga0308175_1014241212	3300031938	Soil	VGRARYLQWVTMSAVKPQPQRGAGLLLVHCSTAWDEGGPTALSRLEQQIGVDLARLLVWALVGPYGRRGSSSP
Ga0308174_119371281	3300031939	Soil	VGRARYLQWVTMSAVKPQPQRGAGLLLVHCSTAWDEGGPTALSRLEQQIGVDLARLLVWALVGP
Ga0308173_100252602	3300032074	Soil	MSVLKPQPQRGAGLLLVNCAAVCDERPTAYSRLEQVLGGDLARMLVVALVGPQGRRGSSS
Ga0307470_113049782	3300032174	Hardwood Forest Soil	MQSETPQTMRGAGLLLAHCHPVLDERPSAYERLQERVGDDLARLLVFALAGPQGRRGSSS
Ga0335070_109159862	3300032829	Soil	MTVVQPQPSRGAALLLVHCAAVEDGRESALERLERSIGRELTRLLMFALAAPQGRRGSSS
Ga0310811_113489771	3300033475	Soil	QPMRGAALLLVHCSAVADERESAYTRLEHKLGGELARLLVVALSGAQTGRRGSSSP
Ga0370501_0011910_22_207	3300034195	Untreated Peat Soil	MSVFQPQPVRGAELLLVHCAAVSDDRPSAYDRLEQEIGGKLARLLVFALVGPQGRRGSSS
Ga0372943_0009676_646_831	3300034268	Soil	MSVAEPQPERGDALLLVHCAAVPGERPSAYTRLVDALGGDLARLLLFALSGSHGRRGSSS
Ga0372943_1170670_2_160	3300034268	Soil	GAALLLVHCADVAEERLSAYTRLEQQLGEPLTRLLVRALVGAPQGRRGSSSP
Ga0372946_0521458_242_430	3300034384	Soil	MSVLQPQPMRGAALLLVHCSAVADDRESAYTRLEHKLGGELTRLLVFALSGAQTGRRGSSSP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054212

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences