Metagenome / Metatranscriptome Family F054180

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F054180
Family Type	Metagenome / Metatranscriptome
Number of Sequences	140
Average Sequence Length	40 residues
Representative Sequence	MKLVGVISTAVLSLTLGIAAPAYAQQEQHDQQEEQKAK
Number of Associated Samples	113
Number of Associated Scaffolds	140

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.12 %
% of genes near scaffold ends (potentially truncated)	93.57 %
% of genes from short scaffolds (< 2000 bps)	89.29 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.857 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.143 % of family members)
Environment Ontology (ENVO)	Unclassified (32.143 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.571 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 54.55% β-sheet: 0.00% Coil/Unstructured: 45.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 140 Family Scaffolds
PF00691	OmpA	71.43
PF04041	Glyco_hydro_130	1.43
PF04366	Ysc84	1.43
PF00072	Response_reg	0.71
PF07883	Cupin_2	0.71
PF01027	Bax1-I	0.71
PF01292	Ni_hydr_CYTB	0.71
PF09720	Unstab_antitox	0.71

COG ID	Name	Functional Category	% Frequency in 140 Family Scaffolds
COG2152	Predicted glycosyl hydrolase, GH43/DUF377 family	Carbohydrate transport and metabolism [G]	1.43
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	1.43
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.71
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.71
COG3038	Cytochrome b561	Energy production and conversion [C]	0.71
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.71
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.86 %
Unclassified	root	N/A	17.14 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.86 %
Unclassified	root	N/A	17.14 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.86 %
Unclassified	root	N/A	17.14 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	76.43 %
Unclassified	root	N/A	17.14 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	54.29 %
Unclassified	root	N/A	17.14 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.43 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	54.29 %
Unclassified	root	N/A	17.14 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.43 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	54.29 %
Unclassified	root	N/A	17.14 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.43 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	54.29 %
Unclassified	root	N/A	17.14 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	1.43 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10244532	Not Available	672	Open in IMG/M
3300001471\|JGI12712J15308_10077552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	841	Open in IMG/M
3300001546\|JGI12659J15293_10131286	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300004092\|Ga0062389_102082948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	743	Open in IMG/M
3300005439\|Ga0070711_101644599	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300005610\|Ga0070763_10181325	Not Available	1115	Open in IMG/M
3300005921\|Ga0070766_10888554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300005921\|Ga0070766_11110868	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300006086\|Ga0075019_11008266	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300006176\|Ga0070765_101785492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300006176\|Ga0070765_102051353	Not Available	535	Open in IMG/M
3300006864\|Ga0066797_1057679	All Organisms → cellular organisms → Bacteria	1366	Open in IMG/M
3300009518\|Ga0116128_1233224	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300009634\|Ga0116124_1142445	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300009636\|Ga0116112_1140347	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300009637\|Ga0116118_1084085	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1085	Open in IMG/M
3300009637\|Ga0116118_1148720	Not Available	758	Open in IMG/M
3300009644\|Ga0116121_1187516	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300009683\|Ga0116224_10230511	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300009700\|Ga0116217_10172814	Not Available	1432	Open in IMG/M
3300010379\|Ga0136449_102777522	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300011108\|Ga0138601_132781	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300011120\|Ga0150983_15813434	Not Available	648	Open in IMG/M
3300014160\|Ga0181517_10248242	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	953	Open in IMG/M
3300014657\|Ga0181522_10123705	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1504	Open in IMG/M
3300014657\|Ga0181522_10218545	All Organisms → cellular organisms → Bacteria → Acidobacteria	1123	Open in IMG/M
3300016750\|Ga0181505_10484656	All Organisms → cellular organisms → Bacteria	2031	Open in IMG/M
3300017931\|Ga0187877_1330875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300017938\|Ga0187854_10349697	All Organisms → cellular organisms → Bacteria → Acidobacteria	625	Open in IMG/M
3300017940\|Ga0187853_10287792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	746	Open in IMG/M
3300017955\|Ga0187817_11043195	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300017995\|Ga0187816_10538274	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300017998\|Ga0187870_1243569	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300018006\|Ga0187804_10256648	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300018007\|Ga0187805_10120141	All Organisms → cellular organisms → Bacteria → Acidobacteria	1192	Open in IMG/M
3300018014\|Ga0187860_1291563	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300018025\|Ga0187885_10551103	Not Available	513	Open in IMG/M
3300018030\|Ga0187869_10301634	Not Available	770	Open in IMG/M
3300018033\|Ga0187867_10683268	All Organisms → cellular organisms → Bacteria → Acidobacteria	559	Open in IMG/M
3300018037\|Ga0187883_10756156	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300019185\|Ga0184587_119200	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300020580\|Ga0210403_10062477	All Organisms → cellular organisms → Bacteria	2987	Open in IMG/M
3300020581\|Ga0210399_11357413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300021088\|Ga0210404_10541602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	659	Open in IMG/M
3300021178\|Ga0210408_11180831	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	585	Open in IMG/M
3300021402\|Ga0210385_11464501	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300021403\|Ga0210397_10177525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1508	Open in IMG/M
3300021404\|Ga0210389_11452980	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300021405\|Ga0210387_10197704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1743	Open in IMG/M
3300021405\|Ga0210387_11733462	Not Available	528	Open in IMG/M
3300021406\|Ga0210386_10112950	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2240	Open in IMG/M
3300021406\|Ga0210386_11215071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300021407\|Ga0210383_10703347	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	868	Open in IMG/M
3300021420\|Ga0210394_10692634	Not Available	893	Open in IMG/M
3300021432\|Ga0210384_11194167	Not Available	665	Open in IMG/M
3300021474\|Ga0210390_11293354	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300021477\|Ga0210398_10017472	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6181	Open in IMG/M
3300021478\|Ga0210402_10312791	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1455	Open in IMG/M
3300021478\|Ga0210402_11163561	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	699	Open in IMG/M
3300021478\|Ga0210402_11308348	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300021479\|Ga0210410_11555898	Not Available	554	Open in IMG/M
3300021559\|Ga0210409_10894803	Not Available	761	Open in IMG/M
3300021559\|Ga0210409_10902332	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	757	Open in IMG/M
3300022557\|Ga0212123_10749179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300022872\|Ga0224526_1015205	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1830	Open in IMG/M
3300023068\|Ga0224554_1034744	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1416	Open in IMG/M
3300023672\|Ga0247553_108328	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300025454\|Ga0208039_1013782	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1851	Open in IMG/M
3300025480\|Ga0208688_1110925	Not Available	520	Open in IMG/M
3300025612\|Ga0208691_1150059	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300027432\|Ga0209421_1052572	All Organisms → cellular organisms → Bacteria → Acidobacteria	813	Open in IMG/M
3300027604\|Ga0208324_1146255	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300027667\|Ga0209009_1060843	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	946	Open in IMG/M
3300027676\|Ga0209333_1117208	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300027696\|Ga0208696_1159441	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	727	Open in IMG/M
3300027701\|Ga0209447_10090889	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	838	Open in IMG/M
3300027701\|Ga0209447_10229865	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300027767\|Ga0209655_10262407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300027768\|Ga0209772_10141311	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300027768\|Ga0209772_10150899	Not Available	729	Open in IMG/M
3300027768\|Ga0209772_10279961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300027812\|Ga0209656_10495490	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	534	Open in IMG/M
3300027842\|Ga0209580_10336431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300027855\|Ga0209693_10052047	All Organisms → cellular organisms → Bacteria	2015	Open in IMG/M
3300027855\|Ga0209693_10353892	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300027869\|Ga0209579_10258348	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	936	Open in IMG/M
3300027879\|Ga0209169_10131419	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1301	Open in IMG/M
3300027908\|Ga0209006_11120097	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	620	Open in IMG/M
3300028015\|Ga0265353_1024873	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300028566\|Ga0302147_10194856	All Organisms → cellular organisms → Bacteria → Acidobacteria	681	Open in IMG/M
3300028747\|Ga0302219_10115906	All Organisms → cellular organisms → Bacteria → Acidobacteria	1017	Open in IMG/M
3300028800\|Ga0265338_10202586	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1495	Open in IMG/M
3300028806\|Ga0302221_10285466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	719	Open in IMG/M
3300028906\|Ga0308309_10597407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	958	Open in IMG/M
3300028906\|Ga0308309_11277737	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300028906\|Ga0308309_11530673	Not Available	569	Open in IMG/M
3300028909\|Ga0302200_10369854	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300028909\|Ga0302200_10424274	All Organisms → cellular organisms → Bacteria → Acidobacteria	616	Open in IMG/M
3300029882\|Ga0311368_10263065	All Organisms → cellular organisms → Bacteria → Acidobacteria	1326	Open in IMG/M
3300029943\|Ga0311340_10152725	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2414	Open in IMG/M
3300029943\|Ga0311340_10372371	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1324	Open in IMG/M
3300029951\|Ga0311371_10345079	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2064	Open in IMG/M
3300030041\|Ga0302274_10176090	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1075	Open in IMG/M
3300030044\|Ga0302281_10360802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300030503\|Ga0311370_10236904	All Organisms → cellular organisms → Bacteria → Acidobacteria	2418	Open in IMG/M
3300030617\|Ga0311356_10405074	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1346	Open in IMG/M
3300030746\|Ga0302312_10406305	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300030778\|Ga0075398_12029272	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300030803\|Ga0074037_1818359	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2272	Open in IMG/M
3300030815\|Ga0265746_1004553	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1417	Open in IMG/M
3300030913\|Ga0265759_100104	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2351	Open in IMG/M
3300030916\|Ga0075386_10008277	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300030923\|Ga0138296_1078496	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300030923\|Ga0138296_1672733	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300030941\|Ga0265737_101139	Not Available	1156	Open in IMG/M
3300030998\|Ga0073996_11737015	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	819	Open in IMG/M
3300031030\|Ga0074030_10983114	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1540	Open in IMG/M
3300031057\|Ga0170834_103519555	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300031057\|Ga0170834_104341368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	872	Open in IMG/M
3300031057\|Ga0170834_113661622	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300031090\|Ga0265760_10232788	Not Available	632	Open in IMG/M
3300031128\|Ga0170823_12399133	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1063	Open in IMG/M
3300031128\|Ga0170823_12716855	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300031128\|Ga0170823_14894060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300031446\|Ga0170820_14819778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300031591\|Ga0310116_122992	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300031708\|Ga0310686_100133722	Not Available	1044	Open in IMG/M
3300031708\|Ga0310686_108928756	All Organisms → cellular organisms → Bacteria → Acidobacteria	1197	Open in IMG/M
3300031708\|Ga0310686_110466655	Not Available	1843	Open in IMG/M
3300031718\|Ga0307474_10236754	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1396	Open in IMG/M
3300031718\|Ga0307474_10499034	All Organisms → cellular organisms → Bacteria → Acidobacteria	954	Open in IMG/M
3300031718\|Ga0307474_11143599	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300031962\|Ga0307479_10222695	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1860	Open in IMG/M
3300032756\|Ga0315742_11665759	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300032897\|Ga0335071_11306094	All Organisms → cellular organisms → Bacteria → Acidobacteria	670	Open in IMG/M
3300033983\|Ga0371488_0025181	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4211	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.29%
Host-Associated	Host-Associated	0.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.57%
Aquatic	Environmental → Aquatic	25.71%
Plants	Host-Associated → Plants	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.71%
Freshwater	Environmental → Aquatic → Freshwater	24.29%
Peat	Environmental → Terrestrial → Peat	12.86%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.71%
Sediment	Environmental → Aquatic → Sediment	0.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	24.29%
Loam	Environmental → Terrestrial → Soil → Loam	13.57%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.43%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.71%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.71%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	15.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.86%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.43%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.86%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.71%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.86%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.86%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.14%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.14%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	6.43%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.71%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.71%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.00%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.86%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.14%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.43%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.43%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.71%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.71%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.71%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009634	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150	Environmental	Open in IMG/M
3300009636	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011108	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 77 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300019185	Soil microbial communities from Bohemian Forest, Czech Republic ? CSE2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022872	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25	Environmental	Open in IMG/M
3300023068	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24	Environmental	Open in IMG/M
3300023672	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025454	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150 (SPAdes)	Environmental	Open in IMG/M
3300025480	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 (SPAdes)	Environmental	Open in IMG/M
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028015	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE6	Environmental	Open in IMG/M
3300028566	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300028909	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030041	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1	Environmental	Open in IMG/M
3300030044	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_1	Environmental	Open in IMG/M
3300030778	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030803	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral C3 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030815	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030913	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030941	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030998	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031030	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Humus C2 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031591	Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033983	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_102445321	3300001356	Peatlands Soil	MTLAGIIGTAVLSLTLGAAAPVYAQEEHPQQEEHGQQQEK
JGI12712J15308_100775521	3300001471	Forest Soil	MKLLGVVSTAVLSLTLGATALAYPQQEQREQEEQKDK
JGI12659J15293_101312862	3300001546	Forest Soil	MKLVGAVSTAVLSLSLGIGIPAYAQQEQNGQQEENKGKAAQEEKR
Ga0062389_1020829481	3300004092	Bog Forest Soil	MKLVGVISTAVLSLALGVAVPAYTQDRDQQEEKDKPAQEKE
Ga0070711_1016445991	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKLVGIISTAALFLTLGAAAPAYAQQEEHAQQEDRKMQQDKP
Ga0070763_101813251	3300005610	Soil	MKLVGIIGTAVLSLTLAAPVYARQEQHDQQEDKDKP
Ga0070766_108885541	3300005921	Soil	MRLVGVIGTAVLSLTLGVAIPAYTQDKQEEEKSKPAQ
Ga0070766_111108682	3300005921	Soil	MKLVGAISTAVLSLSLGVGIPAYAQQDQHEQQEEKDKP
Ga0075019_110082661	3300006086	Watersheds	MKLVGTITTAVLSLTLGVGIPAYAQQEQHDRQEENKDK
Ga0070765_1017854922	3300006176	Soil	MKLVGIFSTAVLSLTLGVGAPVFAQEQHDQEQAKDKPAARETEKKPEPT
Ga0070765_1020513531	3300006176	Soil	VKLVGIIGTAVLSLTLAAPVYAQQEQHDQQEDKDKPAEKKAQPEK
Ga0066797_10576793	3300006864	Soil	MNLVGFISTAVLSLTLVAAAPMYAQEQQDEQKAKPEEKK
Ga0116128_12332242	3300009518	Peatland	MEATPMKLVGIISAAVLSLTLGVAAPAFAQEQHDQQEEQKAKPAQD
Ga0116124_11424451	3300009634	Peatland	MEATPMKLVGVISTAVLSLALGAAVPAFALQEQHDQQEEQKAKPAQ
Ga0116112_11403472	3300009636	Peatland	MEAIPMKLIGVISTAVLSLAIGVAVPVFAQDHEQEEQ
Ga0116118_10840852	3300009637	Peatland	MEATPMKLVGIISAAVLSLTLGVAAPAFAQEQHDQQEEQKAKPAQDEKK
Ga0116118_11487202	3300009637	Peatland	MEATVMNLVGLISTAVLSLTLVAAAPAFAQEQHDQDEQKAKPAQEEKK
Ga0116121_11875162	3300009644	Peatland	MTTAVLSLTLVAATPAFAQDQHEQEEQKAKPAQQED
Ga0116224_102305112	3300009683	Peatlands Soil	MEATPMNLVGVISTAVLSLTLVAAAPVYAQEQHDQQEEQKAKPAQDE
Ga0116217_101728144	3300009700	Peatlands Soil	MEVTPMKLIGVISTAVLCLTLGAAALVYAQEQHEQQEEQKAKPTQD
Ga0136449_1027775222	3300010379	Peatlands Soil	MKLVGIIGTAVLSLTLGAAVPVYAQQEERGQDEHAQ
Ga0138601_1327812	3300011108	Peatlands Soil	MKLVGAISTAVLSLSLGIGIPAYAQQDQHEQQEENKDK
Ga0150983_158134342	3300011120	Forest Soil	MKLIGLCSTAVLSLALGAAAPTYAQQEQHDQQEES
Ga0137390_117833231	3300012363	Vadose Zone Soil	MKLIGVISTAVLSLTLGVAAPVYAQQEEEKSKPSQQEEKKAQPDKSAR
Ga0181517_102482422	3300014160	Bog	MKLVGVISTAVLSLALGVAVPAFAQEQHEQEEQKAPAAQD
Ga0181522_101237051	3300014657	Bog	MEMTHMNLVGFIGTAVLSFTLIAAAPVFAQEQHDQQ
Ga0181522_102185452	3300014657	Bog	VKLIGVISTAVLSLTLAAPVYARQEQHDQQEEQKDKPA
Ga0181505_104846564	3300016750	Peatland	MKLVGVISTAVLSLALGAAVPAFALQEQHDQQEEQKAKP
Ga0187877_13308752	3300017931	Peatland	VKFAGVISTAILSVALGAAAPAFAQEQHDQQEEQKARPAQDEKK
Ga0187854_103496971	3300017938	Peatland	MKLVGVISTAILSLSLGAAAPVYAQEQHDQQEEQKNKPDQE
Ga0187853_102877922	3300017940	Peatland	MKLVGVISTAILSLSLGAAAPVYAQEQHDQQEEQK
Ga0187817_110431952	3300017955	Freshwater Sediment	MKLTGYISTAVLSLALGVAVPAFAQEQHEQEEQKGKPAA
Ga0187816_105382742	3300017995	Freshwater Sediment	MRLIGVISTAVLSLTLGIAAPLYAQEEHEQQQEQKD
Ga0187870_12435691	3300017998	Peatland	MKLVGVISTAVLSLILGVAAPVFAQEQKEDQKAKPDAQEE
Ga0187804_102566481	3300018006	Freshwater Sediment	MKLAGAIGTAVLSLSLGIGIPAYAQQEQHDQQEENK
Ga0187805_101201412	3300018007	Freshwater Sediment	MKLIGVISTAVLCLALGAAALVYAQEQHEQQEEQKAKPAQDE
Ga0187860_12915633	3300018014	Peatland	MKLVGVISTAVLSLALGAAVPAFALQEQHDQQEEQKA
Ga0187885_105511031	3300018025	Peatland	MEAIPVKLVGVISTAILSLTLGAAAPVFAQQERPDPQEEQKAK
Ga0187869_103016342	3300018030	Peatland	MKLVEVISTVVLSLALGAAAPAFAQEQHEQEDKAKPAAQEEK
Ga0187867_106832681	3300018033	Peatland	MNLVGFISTAVLSLTLVAAAPVFAQEQHDQQEEQKAKP
Ga0187883_107561562	3300018037	Peatland	MKLVTVIGTAVLSLALGLAAPAFAQEQHEKEDQKAGSATHEE
Ga0184587_1192002	3300019185	Soil	MKFVGAISTAVLSLSLGIAIPAYAQQEQHDQQEENKD
Ga0210403_100624771	3300020580	Soil	MKLVGAISTAVLSLSLGIGIPAYAQQDQHEQQDENKDKAA
Ga0210399_113574131	3300020581	Soil	MKLAGVIGTAVLSLTLGAAAPAYAQEEHAQQEDKKVQQ
Ga0210404_105416021	3300021088	Soil	MKLVGIIGTAVLSLTLAAPVYARQEQHDQQEDKDKPVEKKAQPEKPA
Ga0210408_111808311	3300021178	Soil	MKLVGAISTAVLSLALGAGIPAYAQQEQHDQQEEQKAKP
Ga0210388_103809903	3300021181	Soil	MKLAGIISTALLSLLLGVAAPLYAQEQHDEQKDQQEKKDTAK
Ga0210385_114645011	3300021402	Soil	MKLVGIIGTAVLSLTLGAAAPVYAQQEERGQQDEHSQQE
Ga0210397_101775251	3300021403	Soil	MRLLGVISTAVLSLSIAAPVYAQQEQHEQQEKDKP
Ga0210389_114529801	3300021404	Soil	MKLAGIIGTAVLSLTLGAAAPVYAQEEHPQQEEHGQQ
Ga0210387_101977041	3300021405	Soil	MRRIGMISTAVLSLSLAAAVPMYAQQEQHDQQEEKKGQAGQ
Ga0210387_117334621	3300021405	Soil	MKLAGIIGTAVLSLTLGVAAPAFAQDQRDQQEEQKAKR
Ga0210386_101129503	3300021406	Soil	MKLVGAISTAVLTLTLGVGIPAYAQQEQHDQQEENKDKP
Ga0210386_112150711	3300021406	Soil	MKLVGIIGTAVLSLTLAAPAYAQQEQHDQQEDKDKPAEKKAQPEKP
Ga0210383_107033472	3300021407	Soil	MKLVGVISTAVLSLTLGVVGPAFAQEQHDQQEEQKDKPAAKENE
Ga0210383_112614771	3300021407	Soil	MKLIGVMSAAVLSLTLGVAAPAYAQQEQHDQKEEEK
Ga0210394_106926342	3300021420	Soil	MKLAGIIGTAVLSLTLGAAAPAYTQQEERGQQDEHAQQEDK
Ga0210384_111941672	3300021432	Soil	MKLAGIIGTAVLSLTLGAAAPVYAQEEHPQQNEHAQQ
Ga0210390_112933542	3300021474	Soil	MKLVGAVSTAVLSLSLGIGIPAYAQQEQNGQQEENKG
Ga0210398_100174725	3300021477	Soil	MKLVGIIGTAVLSLTLAAPAYAQQEQHDQQEDKDKPAE
Ga0210402_103127911	3300021478	Soil	MKLVGVLGTTVLSLTLGLGIPAFAQQEQHDQQEEQ
Ga0210402_111635611	3300021478	Soil	MKLVGAIGTAVLTLSLGIGIPAYAQQEQHEQKEEN
Ga0210402_113083481	3300021478	Soil	MKLVGIISTAVLSLTLGAAAPAYAQEEHAQQEEHAQQEDKK
Ga0210410_115558981	3300021479	Soil	VKLVGIIGTAVLSLTLAAPVYAQQEQHDQQEDKDKPAEKKAQPEKP
Ga0210409_108948032	3300021559	Soil	MKLAGIIGTAVLSLTLGAAAPVYAQEEHPQQNEHA
Ga0210409_109023322	3300021559	Soil	MKLIGAISTAVLSLTLGVGIPAYAQQEQHDQQEEQ
Ga0212123_107491791	3300022557	Iron-Sulfur Acid Spring	MKLVGIIGTSVLALTLGAAAPVYAQQDERGQQDDHAQQD
Ga0224526_10152052	3300022872	Soil	MKLVGLMTAAVLSLTLVAAAPAFAQEQHEQEEQKAKPAQ
Ga0224554_10347441	3300023068	Soil	MKLIGVISTAVLSLTLGVAAPAYAQQEQHDQQEEQKAKPA
Ga0247553_1083282	3300023672	Soil	MRLIGYIGTAVLSLTLVAPAFAQQEQHDEKAVTIFTG
Ga0208039_10137824	3300025454	Peatland	MKLVEVISTVVLSLALGAAAPAFAQEQHEQEDKAKPAAQEE
Ga0208688_11109251	3300025480	Peatland	MKLVEVISTVVLSLALGAAAPAFAQEQHEQEDKAKPAAQEEKAQPE
Ga0208691_11500592	3300025612	Peatland	MKLVGVISTAVLSLSLGIGIPAYAQQDQHEQEENKDKPAQEK
Ga0209421_10525721	3300027432	Forest Soil	MKLVGILSTALLSLTLGATAPAYAQQEEHAQQEDKKVQDKP
Ga0208324_11462552	3300027604	Peatlands Soil	MKLVGVISTAVLSLALGVAAPAFAQEQHEQEEQKAKPA
Ga0209009_10608432	3300027667	Forest Soil	MKVFGIMSTAVLSLTLGVAAPALAQQEQHDQQEEQRDKP
Ga0209333_11172081	3300027676	Forest Soil	MKLVGIISTAVLSLTLGAVTPVFAQEQHDQEQPKD
Ga0208696_11594412	3300027696	Peatlands Soil	MKLVGVISTAVLSLTLGIAAPAYAQQEQRDQQEEQKAKPA
Ga0209447_100908892	3300027701	Bog Forest Soil	MKLVGIIGTAVLSLTLAAPVYAQQEQHEQQEDKDKPAEKK
Ga0209447_102298651	3300027701	Bog Forest Soil	MKLVGAISTAILSLSLGIGIPAYAQQDQHEQQDENKD
Ga0209655_102624072	3300027767	Bog Forest Soil	MKLAGIIGTAILSLILGASSAAYAQDQHEPQEEQKDKPAEKK
Ga0209772_101413111	3300027768	Bog Forest Soil	MKLVGIISTAVLSLTLGVVGPAFAQEQHDQQEEQKDKPAAK
Ga0209772_101508992	3300027768	Bog Forest Soil	MKLIGVFSTAVLSLTLGVAAPIYAQDQHDQQEEQKGKPA
Ga0209772_102799611	3300027768	Bog Forest Soil	MKLAGIIGTAILSLILGASSAAYAQDQHEPQEEQKDKPAE
Ga0209656_104954902	3300027812	Bog Forest Soil	MKLVGAISTAVLSLTLGVGIPAYAQQEQHDQQEENKDKP
Ga0209580_103364311	3300027842	Surface Soil	MKLVGAISTAVLSLTLGAGIPAYAQQEQHDQQGEK
Ga0209693_100520471	3300027855	Soil	MKLVGAISTAVLSLSLGVGIPAYAQQDQHEQQEEK
Ga0209693_103538921	3300027855	Soil	MKLVGIIGTVLLSLILVAPVYAQEQHDQEDQKDQT
Ga0209579_102583482	3300027869	Surface Soil	MKLVGAISTAVLSLSLGVGIPAYAQQEQHEQQEEKGKPAQ
Ga0209169_101314191	3300027879	Soil	MKLVGVISTAVLTLALGAAVPAYAQQEPHDQQEEKDKPAEKKAQPEKPAKAP
Ga0209006_111200971	3300027908	Forest Soil	MNLVGLISTAVLSLTLVAAAPVYAQEQHEQEEKTKPAQEE
Ga0265353_10248731	3300028015	Soil	MKLVGILSTAVLSLTLGVAAPAYAQQEQHDQQEEA
Ga0302147_101948562	3300028566	Bog	MKIVGIMTAAALSLTLGIAAPVYAQEQQHEQKDEQKAEPA
Ga0302219_101159062	3300028747	Palsa	MKLVGVIGTAVLSLSLGIGIPAHAQQEQHEQEENKDK
Ga0265338_102025864	3300028800	Rhizosphere	MKLIGVISTAVLSMTLGVAAPAYAQQEQHDQQEEQKAKPAHD
Ga0302221_102854662	3300028806	Palsa	MKLIGVIGTAVLSLTLGASSAAYAQEQHEQQEEQKDQPADKKA
Ga0308309_105974071	3300028906	Soil	MKLVGIFSTAVLSLTLGVGAPVFAQEQHDQEQAKDKPAARETEKKPE
Ga0308309_112777372	3300028906	Soil	MKLIGLMTAAVLSLTLVAAAPVFAQEQHEDEQKAKPAQEEK
Ga0308309_115306731	3300028906	Soil	MKLAGIIGTAVLSLTLGAAAPVYAQEEHAQQDEHA
Ga0302200_103698541	3300028909	Bog	MTLIGLLTTAALSFTLVAAVPAYAQEQRDQQEEQKA
Ga0302200_104242742	3300028909	Bog	MKIVGIMTAAALSLTLGIAAPVYAQEQQHEQKDEQKAEPAKQ
Ga0311368_102630651	3300029882	Palsa	MKLVGVISTAVLSLTLGIAAPAYAQQEQHDQQEEQK
Ga0311340_101527251	3300029943	Palsa	MKLVGILSTAVLSLTLVAAAPAFAQEQHDQQEDQKAKPA
Ga0311340_103723711	3300029943	Palsa	MKLIGVIGTAVLSLTLGASSAAYAQEQHEQQEEQKDQ
Ga0311371_103450791	3300029951	Palsa	MKLLGFASAALLSLTLIAAAPVFAQEQHEDEAKAK
Ga0302274_101760902	3300030041	Bog	MKLAGVIGTAILSLSLGASNAAYAQEQHDQQEESKDKPAE
Ga0302281_103608021	3300030044	Fen	MKTLGFLTSAALCFTMGAAAPAFAQEQHEQKEEQKAK
Ga0302176_101865701	3300030057	Palsa	MKLLGFASAALLSLTLIAAAPVFAQEQHEDEAKAKPAQQEDKSQPAKPG
Ga0311370_102369041	3300030503	Palsa	MKLVGVISTAVLSLTLGIAAPAYAQQEQHDQQEEQKAK
Ga0311356_104050742	3300030617	Palsa	MKLTAVISTAVLSLALGVAASAFAQEQHEQDEPKAKP
Ga0302312_104063052	3300030746	Palsa	MKLLGFASAALLSLTLIAAAPVFAQEQHEDEAKAKPAQQEDK
Ga0075398_120292721	3300030778	Soil	MKLVGAISTAVLSFTLGLGIPAYAQQEQHDQQEGNKDKP
Ga0074037_18183591	3300030803	Soil	MKRIGIMSTAVLSLTLGVAAPAYAQQEQHDQQEEQKDKP
Ga0265746_10045532	3300030815	Soil	MKLLGAIGIAVLSLTLGATALAYPQQEQRDQQQEDKDKPTH
Ga0265759_1001041	3300030913	Soil	MKLVGVISTAVLSLSLGIGIPAYAQQEQHDQQEENKDKPAQEK
Ga0075386_100082771	3300030916	Soil	MKLVGAISTAVLSFTLGVGIPAYAQQEQHDQQEENKDK
Ga0138296_10784961	3300030923	Soil	MKLVGAISTAVLSLTIGIGLPAYAQQEQHEQKEESKP
Ga0138296_16727332	3300030923	Soil	MKLVGAIGTTILSLTLGVGIPAYAQQDQHDQQEENKDK
Ga0265737_1011392	3300030941	Soil	MKFVGLISTAVLSLTLGVAAPVYAQEQHDQQDEQKAKPA
Ga0073996_117370151	3300030998	Soil	MKLVVGISTAVLSLILAVAAPAYAQQEEHAQQEEKHGQQDDVEVLIIMD
Ga0074030_109831141	3300031030	Soil	MKLVGVISTAVLSLALGVAAPAFAQDQHDQDDKSKPAAQEEKKA
Ga0170834_1035195552	3300031057	Forest Soil	MKLVGAISTAVLTLTLGVGVPAYAQQEQHDQQKEDKDKPSGETEKKAQ
Ga0170834_1043413682	3300031057	Forest Soil	MKLVGAISTAVLTLTLGVGVPAYAQQEQHDQQKEDKD
Ga0170834_1136616222	3300031057	Forest Soil	MKLVGAVSTAVLSLALGVAVPAFAQEQHEQDEQKAKAPESEKKGQP
Ga0265760_102327882	3300031090	Soil	MKLVGVISTAVLSLTFGAAAPVYAQQDQHDQQEEQKVRPS
Ga0170823_123991333	3300031128	Forest Soil	MRLIGIISTAVLSLILAAPVYAQGQHDQKEEKAKPEEKKAQPEKSAKPQ
Ga0170823_127168552	3300031128	Forest Soil	MKLVGAISTAVLTLILGIGIPAYAQQEQHDQQKEDKDKPSGETEKK
Ga0170823_148940601	3300031128	Forest Soil	MKLVGAISTAVLSFTLGVGIPAYAQQEQHDQQEENKDKPA
Ga0170820_148197781	3300031446	Forest Soil	MKLIGAISTAVLSFTLGVGIPAYAQQEQHDQQEENKDK
Ga0310116_1229922	3300031591	Soil	MKLVGIISTAVLSLTLGVVAPSFAQEQHDQQEQPKD
Ga0310686_1001337222	3300031708	Soil	MKLAGIIGTAVLSLTLGAAAPVYAQEEHAQQDEHAQQ
Ga0310686_1089287563	3300031708	Soil	MKLAGIIGTAVLSLTLGAAAPVYAQEEHAQQDEHAQQEEKKAQ
Ga0310686_1104666552	3300031708	Soil	MKLVGVISTALLSVTLGVAAPALAQEPQHEQEEQKVKPAQEK
Ga0307474_102367541	3300031718	Hardwood Forest Soil	MKLVGAISTAILSFTLGVGIPAYAQQEQHDQQKENKDKPAGEKE
Ga0307474_104990342	3300031718	Hardwood Forest Soil	MKLVGMIGTAVLSLTLGAAAPAYAQQEERGQQEEHAQ
Ga0307474_111435991	3300031718	Hardwood Forest Soil	MKLVGAIGTAVLTFTLGAGIPAYAQQEQHDQQEENKDKPAQ
Ga0307479_102226951	3300031962	Hardwood Forest Soil	MKLVGLISAGVLILAFGASAPAYAQEQRDQQEEKKAQ
Ga0315742_116657593	3300032756	Forest Soil	MKFVGVIGTAVLSFSIGISIPAYAQQEQHDQQEENKD
Ga0335071_113060941	3300032897	Soil	MKLVGAVSIAVLSFTLGVGIPAYAQQEQHDQQEEQ
Ga0371488_0025181_2_130	3300033983	Peat Soil	MNLVGFISTAVLSLAIVAAAPAFAQEQHEQEEQKGKPAAQEEK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054180

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences