Metagenome / Metatranscriptome Family F054172

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F054172
Family Type	Metagenome / Metatranscriptome
Number of Sequences	140
Average Sequence Length	78 residues
Representative Sequence	MGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD
Number of Associated Samples	122
Number of Associated Scaffolds	140

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	53.96 %
% of genes near scaffold ends (potentially truncated)	41.43 %
% of genes from short scaffolds (< 2000 bps)	85.71 %
Associated GOLD sequencing projects	115
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.143 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.714 % of family members)
Environment Ontology (ENVO)	Unclassified (40.714 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.429 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.22% β-sheet: 0.00% Coil/Unstructured: 60.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 140 Family Scaffolds
PF00582	Usp	17.14
PF00571	CBS	2.14
PF00042	Globin	1.43
PF04972	BON	1.43
PF07228	SpoIIE	1.43
PF00115	COX1	1.43
PF02518	HATPase_c	0.71
PF05908	Gamma_PGA_hydro	0.71
PF10116	Host_attach	0.71
PF00950	ABC-3	0.71
PF07517	SecA_DEAD	0.71
PF13437	HlyD_3	0.71
PF01145	Band_7	0.71
PF04392	ABC_sub_bind	0.71
PF01988	VIT1	0.71
PF00860	Xan_ur_permease	0.71
PF00436	SSB	0.71

COG ID	Name	Functional Category	% Frequency in 140 Family Scaffolds
COG1017	Hemoglobin-like flavoprotein	Energy production and conversion [C]	1.43
COG0609	ABC-type Fe3+-siderophore transport system, permease component	Inorganic ion transport and metabolism [P]	0.71
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	0.71
COG0653	Preprotein translocase subunit SecA (ATPase, RNA helicase)	Intracellular trafficking, secretion, and vesicular transport [U]	0.71
COG1108	ABC-type Mn2+/Zn2+ transport system, permease component	Inorganic ion transport and metabolism [P]	0.71
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	0.71
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	0.71
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	0.71
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.71
COG4195	Phage-related replication protein YjqB, UPF0714/DUF867 family	Mobilome: prophages, transposons [X]	0.71
COG4606	ABC-type enterochelin transport system, permease component	Inorganic ion transport and metabolism [P]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.14 %
Unclassified	root	N/A	27.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.14 %
Unclassified	root	N/A	27.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.14 %
Unclassified	root	N/A	27.86 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	69.29 %
Unclassified	root	N/A	27.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	51.43 %
Unclassified	root	N/A	27.86 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.57 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	6.43 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.43 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.86 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	6.43 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.00 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.43 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.71 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.71 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.86 %
Acetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter	6.43 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.43 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.71 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.71 %
Methylorubrum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum	0.71 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.86 %
Acetobacter okinawensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter okinawensis	6.43 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	0.71 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.71 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.71 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.71 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.86 %
Acetobacter okinawensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter okinawensis	6.43 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.71 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	0.71 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.71 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.71 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10558684	Not Available	545	Open in IMG/M
3300001976\|JGI24752J21851_1024170	All Organisms → cellular organisms → Bacteria → Proteobacteria	796	Open in IMG/M
3300001991\|JGI24743J22301_10118316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	579	Open in IMG/M
3300002568\|C688J35102_120736828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1451	Open in IMG/M
3300002568\|C688J35102_120963097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3315	Open in IMG/M
3300004081\|Ga0063454_102085418	Not Available	503	Open in IMG/M
3300004114\|Ga0062593_101626825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	702	Open in IMG/M
3300004153\|Ga0063455_100118527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1138	Open in IMG/M
3300004153\|Ga0063455_101391348	Not Available	540	Open in IMG/M
3300004156\|Ga0062589_100570663	All Organisms → cellular organisms → Bacteria → Proteobacteria	973	Open in IMG/M
3300004479\|Ga0062595_101731537	Not Available	590	Open in IMG/M
3300005103\|Ga0066813_1013683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter okinawensis	532	Open in IMG/M
3300005158\|Ga0066816_1027494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter okinawensis	508	Open in IMG/M
3300005160\|Ga0066820_1005801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	721	Open in IMG/M
3300005164\|Ga0066815_10086614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter okinawensis	572	Open in IMG/M
3300005165\|Ga0066869_10003671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1827	Open in IMG/M
3300005169\|Ga0066810_10048378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter okinawensis	823	Open in IMG/M
3300005169\|Ga0066810_10139118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter okinawensis	571	Open in IMG/M
3300005173\|Ga0066822_1002292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	924	Open in IMG/M
3300005328\|Ga0070676_10113908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1688	Open in IMG/M
3300005330\|Ga0070690_101759763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter okinawensis	505	Open in IMG/M
3300005332\|Ga0066388_100066343	All Organisms → cellular organisms → Bacteria → Proteobacteria	3879	Open in IMG/M
3300005332\|Ga0066388_100223965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	2511	Open in IMG/M
3300005333\|Ga0070677_10648144	Not Available	590	Open in IMG/M
3300005339\|Ga0070660_101451896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter okinawensis	583	Open in IMG/M
3300005341\|Ga0070691_10186446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1083	Open in IMG/M
3300005344\|Ga0070661_100785375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	781	Open in IMG/M
3300005353\|Ga0070669_100350256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1199	Open in IMG/M
3300005356\|Ga0070674_100334874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1217	Open in IMG/M
3300005438\|Ga0070701_10030987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2651	Open in IMG/M
3300005455\|Ga0070663_101343564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	632	Open in IMG/M
3300005456\|Ga0070678_101308329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	674	Open in IMG/M
3300005530\|Ga0070679_100510541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1146	Open in IMG/M
3300005535\|Ga0070684_100456634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1181	Open in IMG/M
3300005544\|Ga0070686_100124561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1774	Open in IMG/M
3300005545\|Ga0070695_101168916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	632	Open in IMG/M
3300005547\|Ga0070693_100459832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	895	Open in IMG/M
3300005548\|Ga0070665_100643025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1074	Open in IMG/M
3300005549\|Ga0070704_100393874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1180	Open in IMG/M
3300005564\|Ga0070664_100063907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3138	Open in IMG/M
3300005718\|Ga0068866_10126435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1448	Open in IMG/M
3300005764\|Ga0066903_100021244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6929	Open in IMG/M
3300005764\|Ga0066903_103340303	Not Available	867	Open in IMG/M
3300005844\|Ga0068862_102038700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter okinawensis	585	Open in IMG/M
3300006038\|Ga0075365_10054360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2655	Open in IMG/M
3300006038\|Ga0075365_10216395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1343	Open in IMG/M
3300006042\|Ga0075368_10591428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter okinawensis	502	Open in IMG/M
3300006057\|Ga0075026_100357993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	811	Open in IMG/M
3300006177\|Ga0075362_10300045	All Organisms → cellular organisms → Bacteria → Proteobacteria	797	Open in IMG/M
3300006178\|Ga0075367_10547202	Not Available	735	Open in IMG/M
3300006195\|Ga0075366_10628322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300006195\|Ga0075366_10633497	Not Available	663	Open in IMG/M
3300006237\|Ga0097621_100244827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1568	Open in IMG/M
3300006603\|Ga0074064_11812641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	977	Open in IMG/M
3300006846\|Ga0075430_101540315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	546	Open in IMG/M
3300009036\|Ga0105244_10196969	All Organisms → cellular organisms → Bacteria → Proteobacteria	951	Open in IMG/M
3300009100\|Ga0075418_10878771	Not Available	969	Open in IMG/M
3300009148\|Ga0105243_10088121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2549	Open in IMG/M
3300009148\|Ga0105243_10684405	Not Available	998	Open in IMG/M
3300009176\|Ga0105242_11274033	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300010043\|Ga0126380_10303729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1137	Open in IMG/M
3300010373\|Ga0134128_10144372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2691	Open in IMG/M
3300010398\|Ga0126383_11303949	Not Available	816	Open in IMG/M
3300010399\|Ga0134127_10728880	All Organisms → cellular organisms → Bacteria → Proteobacteria	1034	Open in IMG/M
3300012354\|Ga0137366_11215271	Not Available	512	Open in IMG/M
3300012469\|Ga0150984_111818572	All Organisms → cellular organisms → Bacteria	1935	Open in IMG/M
3300012908\|Ga0157286_10096306	Not Available	861	Open in IMG/M
3300012939\|Ga0162650_100007128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1360	Open in IMG/M
3300012944\|Ga0137410_11205667	Not Available	652	Open in IMG/M
3300012948\|Ga0126375_10002903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6066	Open in IMG/M
3300012955\|Ga0164298_10153054	All Organisms → cellular organisms → Bacteria → Proteobacteria	1297	Open in IMG/M
3300012957\|Ga0164303_10055598	All Organisms → cellular organisms → Bacteria	1777	Open in IMG/M
3300012958\|Ga0164299_10031133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2319	Open in IMG/M
3300012961\|Ga0164302_10056968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1971	Open in IMG/M
3300012961\|Ga0164302_10375263	Not Available	960	Open in IMG/M
3300012984\|Ga0164309_10314067	All Organisms → cellular organisms → Bacteria → Proteobacteria	1135	Open in IMG/M
3300012987\|Ga0164307_10560560	All Organisms → cellular organisms → Bacteria → Proteobacteria	874	Open in IMG/M
3300012988\|Ga0164306_10094607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1933	Open in IMG/M
3300012989\|Ga0164305_10167796	All Organisms → cellular organisms → Bacteria → Proteobacteria	1509	Open in IMG/M
3300012989\|Ga0164305_10268162	All Organisms → cellular organisms → Bacteria → Proteobacteria	1243	Open in IMG/M
3300013105\|Ga0157369_10504075	All Organisms → cellular organisms → Bacteria → Proteobacteria	1252	Open in IMG/M
3300013297\|Ga0157378_10608781	All Organisms → cellular organisms → Bacteria → Proteobacteria	1104	Open in IMG/M
3300013306\|Ga0163162_12572999	Not Available	585	Open in IMG/M
3300014326\|Ga0157380_12328126	Not Available	600	Open in IMG/M
3300014745\|Ga0157377_11540420	Not Available	530	Open in IMG/M
3300015373\|Ga0132257_100607338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1352	Open in IMG/M
3300015373\|Ga0132257_100887510	All Organisms → cellular organisms → Bacteria → Proteobacteria	1117	Open in IMG/M
3300015374\|Ga0132255_101984703	Not Available	885	Open in IMG/M
3300017792\|Ga0163161_10112888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2033	Open in IMG/M
3300017792\|Ga0163161_10955831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	729	Open in IMG/M
3300017997\|Ga0184610_1106189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	894	Open in IMG/M
3300018051\|Ga0184620_10025490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1511	Open in IMG/M
3300018067\|Ga0184611_1101124	All Organisms → cellular organisms → Bacteria → Proteobacteria	1001	Open in IMG/M
3300018073\|Ga0184624_10080096	All Organisms → cellular organisms → Bacteria → Proteobacteria	1374	Open in IMG/M
3300018073\|Ga0184624_10433139	Not Available	579	Open in IMG/M
3300018081\|Ga0184625_10006791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5155	Open in IMG/M
3300018083\|Ga0184628_10136505	All Organisms → cellular organisms → Bacteria → Proteobacteria	1273	Open in IMG/M
3300018469\|Ga0190270_10169626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1802	Open in IMG/M
3300018469\|Ga0190270_11148290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	812	Open in IMG/M
3300018476\|Ga0190274_12938030	Not Available	572	Open in IMG/M
3300019356\|Ga0173481_10495195	Not Available	621	Open in IMG/M
3300021082\|Ga0210380_10126884	All Organisms → cellular organisms → Bacteria → Proteobacteria	1137	Open in IMG/M
3300022883\|Ga0247786_1105471	Not Available	612	Open in IMG/M
3300025321\|Ga0207656_10193882	All Organisms → cellular organisms → Bacteria → Proteobacteria	979	Open in IMG/M
3300025900\|Ga0207710_10057422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1758	Open in IMG/M
3300025901\|Ga0207688_10008175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5686	Open in IMG/M
3300025901\|Ga0207688_10357633	Not Available	900	Open in IMG/M
3300025903\|Ga0207680_10181677	All Organisms → cellular organisms → Bacteria	1423	Open in IMG/M
3300025905\|Ga0207685_10296105	Not Available	799	Open in IMG/M
3300025907\|Ga0207645_10104554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1829	Open in IMG/M
3300025908\|Ga0207643_10010813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4921	Open in IMG/M
3300025919\|Ga0207657_11188520	Not Available	580	Open in IMG/M
3300025920\|Ga0207649_10283397	All Organisms → cellular organisms → Bacteria → Proteobacteria	1205	Open in IMG/M
3300025927\|Ga0207687_10461639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1055	Open in IMG/M
3300025931\|Ga0207644_10668658	All Organisms → cellular organisms → Bacteria → Proteobacteria	865	Open in IMG/M
3300025937\|Ga0207669_11711139	Not Available	537	Open in IMG/M
3300026089\|Ga0207648_10031749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4668	Open in IMG/M
3300026118\|Ga0207675_101628421	Not Available	666	Open in IMG/M
3300026121\|Ga0207683_10031259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4620	Open in IMG/M
3300028379\|Ga0268266_10415708	Not Available	1274	Open in IMG/M
3300028379\|Ga0268266_12216946	Not Available	521	Open in IMG/M
3300028708\|Ga0307295_10024068	All Organisms → cellular organisms → Bacteria → Proteobacteria	1501	Open in IMG/M
3300028768\|Ga0307280_10271558	Not Available	614	Open in IMG/M
3300028787\|Ga0307323_10239450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	654	Open in IMG/M
3300028796\|Ga0307287_10001541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7691	Open in IMG/M
3300028802\|Ga0307503_10011940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2601	Open in IMG/M
3300028802\|Ga0307503_10081329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1332	Open in IMG/M
3300028828\|Ga0307312_10880502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	593	Open in IMG/M
3300028876\|Ga0307286_10270713	Not Available	624	Open in IMG/M
3300030989\|Ga0308196_1007649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1057	Open in IMG/M
3300031058\|Ga0308189_10028441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1392	Open in IMG/M
3300031184\|Ga0307499_10231514	Not Available	582	Open in IMG/M
3300031198\|Ga0307500_10073138	All Organisms → cellular organisms → Bacteria → Proteobacteria	874	Open in IMG/M
3300031198\|Ga0307500_10302421	Not Available	508	Open in IMG/M
3300031226\|Ga0307497_10302431	Not Available	734	Open in IMG/M
3300031748\|Ga0318492_10280324	Not Available	865	Open in IMG/M
3300031879\|Ga0306919_10408521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1042	Open in IMG/M
3300032013\|Ga0310906_10333546	Not Available	981	Open in IMG/M
3300032075\|Ga0310890_10517802	Not Available	910	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.29%
Host-Associated	Host-Associated	40.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.86%
Plants	Host-Associated → Plants	40.71%
Aquatic	Environmental → Aquatic	6.43%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.43%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.86%
Roots	Host-Associated → Plants → Roots	6.43%
Sediment	Environmental → Aquatic → Sediment	5.71%
Freshwater	Environmental → Aquatic → Freshwater	0.71%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.86%
Loam	Environmental → Terrestrial → Soil → Loam	14.29%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.71%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	5.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.14%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.43%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.43%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.71%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.71%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	5.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.57%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.14%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.43%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.43%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.43%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.71%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.43%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.00%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	5.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.29%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.29%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.29%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.14%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.14%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.14%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.14%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.43%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.43%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.43%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.43%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.43%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.43%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.43%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.43%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.71%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.71%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.71%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005103	Soil and rhizosphere microbial communities from Laval, Canada - mgLAA	Environmental	Open in IMG/M
3300005158	Soil and rhizosphere microbial communities from Laval, Canada - mgHAA	Environmental	Open in IMG/M
3300005160	Soil and rhizosphere microbial communities from Laval, Canada - mgLMB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005173	Soil and rhizosphere microbial communities from Laval, Canada - mgHMA	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300030989	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_105586841	3300001661	Forest Soil	RPSTRLLANMRMLDDKDVVCLLRSEVERAGGQSAWARREWIDRTLVNRVLCGQKPPTKEIVRALKLCNLYALHGR*
JGI24752J21851_10241702	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	MGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAXDDD*
JGI24743J22301_101183161	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	MGVETSAFAACELEEFPMGVQPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD*
C688J35102_1207368281	3300002568	Soil	MGVRPSSNQSVLENEDLMRLLRSEVKRAGGQSSWARREHIDRTMLNKILNGRKPITKEVIRALKLCNVYAFDDD*
C688J35102_1209630973	3300002568	Soil	MGVQPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD*
Ga0063454_1020854182	3300004081	Soil	LENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0062593_1016268252	3300004114	Soil	MGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYA
Ga0063455_1001185272	3300004153	Soil	MGRRLRRPFDMGVETSAFAACELEEFPMGVQPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD*
Ga0063455_1013913482	3300004153	Soil	EEFPMGVRPSSNQSVLENEDLMRLLRSEVKRAGGQSSWARREHIDRTMLNKILNGRKPITKEVIRALKLCNVYAFDDD*
Ga0062589_1005706632	3300004156	Soil	VACELEEFPMGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD*
Ga0062595_1017315371	3300004479	Soil	MGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD*
Ga0066813_10136831	3300005103	Soil	MGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYALDDD*
Ga0066816_10274941	3300005158	Soil	MGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0066820_10058011	3300005160	Soil	EPAPSWRAKLEEFPMGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0066815_100866141	3300005164	Soil	MGVQPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYALDDD*
Ga0066869_100036713	3300005165	Soil	MGRRLRRPFDMGVETSAFAACELEEFPMGVRPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYALDDD*
Ga0066810_100483781	3300005169	Soil	DKNGVVRLLATEIKRAGGQSSWARRERIDRTILNKVLRGRKPPTEEIIRALKLCNMYEPDDCGAAD*
Ga0066810_101391181	3300005169	Soil	MGVETSAFAACELEEFPMGVRPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0066822_10022921	3300005173	Soil	MGRRLRRPFDMGVETSAFAACELEEFPMEVRPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYALDDD*
Ga0070676_101139082	3300005328	Miscanthus Rhizosphere	MGVQPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0070690_1017597631	3300005330	Switchgrass Rhizosphere	LEKFPMGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0066388_1000663431	3300005332	Tropical Forest Soil	MRMLDDKDVVCFLRSEVERAGGQSSWARRQGIDRSALNRVLTGRKPPTKQIIRALQLCHVYALDAAPAAKGEGRHSVRRPG*
Ga0066388_1002239653	3300005332	Tropical Forest Soil	MRMLDDKDVVCFLRFEVERAGGQSSWARRQGIDRSALNRVLSGRKPPTKQIIRALRLCHVYALDAAPVANEEARHSVRRPG*
Ga0070677_106481442	3300005333	Miscanthus Rhizosphere	MGVETSAFAACELEEFPMGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0070660_1014518961	3300005339	Corn Rhizosphere	MGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPISKEIIRALKLCNVYAL
Ga0070691_101864461	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	ACELEEFPMGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD*
Ga0070661_1007853751	3300005344	Corn Rhizosphere	KLEEFPMGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD*
Ga0070669_1003502561	3300005353	Switchgrass Rhizosphere	LRRPFDMGVETSAFAACELEEFPMGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0070674_1003348741	3300005356	Miscanthus Rhizosphere	LENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD*
Ga0070701_100309871	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	ACELEEFPMGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0070663_1013435642	3300005455	Corn Rhizosphere	VGCQLEEEFPMGVRPSSKPPTLEKQDLMRLLRSQVKQAGGQSSWARRERIDRAMLNTILNDRKPITKEIIRALKLCNVYALNDD*
Ga0070678_1013083292	3300005456	Miscanthus Rhizosphere	MGVRPSSKPPTLEKQDLMRLLRSQVKQAGGQSSWARRERIDRAMLNRILNDRKPITKEIIRALKLCNVYAFDDD*
Ga0070679_1005105411	3300005530	Corn Rhizosphere	MGVRPSSNLRILENEDLMRLLRSEVQQAGGQSSWARREHIDRTMLNRILNGRKPITNEIIRALKLCNVYAFDDD*
Ga0070684_1004566342	3300005535	Corn Rhizosphere	PSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0070686_1001245612	3300005544	Switchgrass Rhizosphere	MGRRLRRPFDMGVETSAFAACELEEFPMGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0070695_1011689162	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MGRRLRRPFDMGVETSAFAACELEEFPMGVQPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYALDDD*
Ga0070693_1004598322	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	GVQPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0070665_1006430252	3300005548	Switchgrass Rhizosphere	MGVRPSSNLRMLEYEDLLRLLRSEVRQAGGQSSWARREHIDRTMLNRILNGRKPINKEIIRALKLCNIYAFDDD*
Ga0070704_1003938742	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MGVRPSSNLRMLEYEDLLRLLRSEVRQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0070664_1000639072	3300005564	Corn Rhizosphere	MGRRLRRPFDMGVETSAFAACELEEFPMGVQPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0068866_101264351	3300005718	Miscanthus Rhizosphere	LEEFPMGVQPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYALDDD*
Ga0066903_1000212444	3300005764	Tropical Forest Soil	MLDTKAVVRLLRSEVQRTGGQPSWARRQGIDRTMLNRVLRGRRVPTEEVIKALKLCNVYACNAKQSAE*
Ga0066903_1033403032	3300005764	Tropical Forest Soil	VGFHEVQMRTLDNKDVVRLLRLEVQRAGGQSSWARRERIDRTMLNRVLLGRRPPTEGIVKALKLCNVYRHS*
Ga0068862_1020387001	3300005844	Switchgrass Rhizosphere	MGVLPSSNPRILESEGLMRRLRAEVKQAGGQSSWARREHIDRTMLNRILNGRKPITNEIIRALKLCNVYAFDDD*
Ga0075365_100543602	3300006038	Populus Endosphere	MGVRPSSNQSVLENEDLMRLLRSEVTRAGGQSSWARREHIDRTMLNKILNGRKPITKEVIRALKLCNVYAFDDD*
Ga0075365_102163953	3300006038	Populus Endosphere	MQTTRSDMRMLDDKAVVGLLRSAVDQAGGQSAWARKERIDRTLLNRVLRGRKQPTGKIIRALKLCNAYALRGDGAA*
Ga0075368_105914281	3300006042	Populus Endosphere	VACELEEFPMGVRPSSNLRALDDEDLMRLLRSEVQQAGGQSSWARREHIDRTSLNKILNGRKPITKEVVRALKLCNVYAFDDD*
Ga0075026_1003579932	3300006057	Watersheds	MRVRPCDNLRILDNKDLMRLLRLEVKQAGGQSSWARRARIDRTMLNRVLNGRKPLTKEIIRALKLCNVYAFDGD*
Ga0075362_103000452	3300006177	Populus Endosphere	MGVRPSSNLRALDDEDLMRLLRSEVQQAGGQSSWARREHIDRTSLNKILNGRKPITQEVIRALKLCNVYAFDDD*
Ga0075367_105472022	3300006178	Populus Endosphere	MGVRPSSKLRILESEGLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0075366_106283221	3300006195	Populus Endosphere	YPMGVRPSSNLRMLEYEDLLRLLRSEVRQAGGQSSWARREHIDRTMLNRILNGRKPINKEIIRALKLCNIYAFDDD*
Ga0075366_106334972	3300006195	Populus Endosphere	FPMGVRPSSNLRALDDQDLMRLLRSEVQQAGGQRSWARREHIDRTSLNKILNGRKPITQEVIRALKLCNVYAFDDD*
Ga0097621_1002448273	3300006237	Miscanthus Rhizosphere	MGVRPSSNLRILENEDLMRLLRSKVKQAGGQSSWARREHIDRTMLNKILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0074064_118126412	3300006603	Soil	SAFAACELEEFPMGVQPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0075430_1015403152	3300006846	Populus Rhizosphere	MLDDKAVVGLLRSAVDQAGGQSAWARKERIDRTLLNRVLRGRKQPTGKIIRALKLCNAYALRGDGAA*
Ga0105244_101969692	3300009036	Miscanthus Rhizosphere	EDLMRLLRSEVKQAGGQSSWARREHINRAMLNRILNGRKPITKEIIRALKLCNVYAFDDD
Ga0075418_108787711	3300009100	Populus Rhizosphere	DDKAVVGLLRSAVDQAGGQSAWARKERIDRTLLNRVLRGRKQPTGKIIRALKLCNAYALRGDGAA*
Ga0105243_100881212	3300009148	Miscanthus Rhizosphere	MGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNKILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0105243_106844052	3300009148	Miscanthus Rhizosphere	MGRRLRRPFDMGVETSAFAACELEEFPMGVQPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPISKEIIRALKLCNVYALDDD*
Ga0105242_112740331	3300009176	Miscanthus Rhizosphere	MGRRLRRPFDMGVETSAFAACELEEFPMGVRPSSNLRILENEDLMRLLRSKVKQAGGQSSWARREHIDRTMLNKILNGRKPITKEIIRALKLCNVYAYDDD*
Ga0126380_103037291	3300010043	Tropical Forest Soil	MLDDKDVVCFLRFEVERAGGQSSWARRQGIDRSALNRVLSGRKPPTKQIIRALRLCHVYALDAAPVANEEARHSVRRPG*
Ga0134128_101443724	3300010373	Terrestrial Soil	MGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARRERIDRAVLNRILNGRKPINKEIIRALKLCNVYALDDD*
Ga0126383_113039492	3300010398	Tropical Forest Soil	MRMLDDQSVVRLLRSEVERAGGQSSWARRERIDRTLLNRVLRGHKPPTGEIIRALKLCNVYVWGAWCARQPPNIR*
Ga0134127_107288802	3300010399	Terrestrial Soil	CPMGVLPSSNPRILESEGLMRRLRAEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0137366_112152711	3300012354	Vadose Zone Soil	MLDTKAVVRLLRSEVERAGGQSWWAKRQGIDRTLLNRVLSGRKPPTEEIIRALKLCNVYALDDDPVAD*
Ga0150984_1118185722	3300012469	Avena Fatua Rhizosphere	VAEPLEPRLLANMRMLDDKDVVCLLRSEVERAGGQSAWARREWIDRTLVNRVLCGQKPPTKEIVRALKLCNLYALHGR*
Ga0157286_100963062	3300012908	Soil	MGRRLRRPFDMGVETSAFAACELEEFPMGVRPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0162650_1000071281	3300012939	Soil	KYPMGVRPSSNLRMLEYEDLLRLLRSEVRQAGGQSSWARREHIDRTMLNRILNGRKPINKEIIRALKLCNIYAFDDD*
Ga0137410_112056671	3300012944	Vadose Zone Soil	YAPSAAAGGRTARASRLQANMRMLDDKDVVCLLRSEVERAGGQSAWARREWIDRTLVNRVLCGQKPPTKEIVRALKLCNLYALHGR*
Ga0126375_100029033	3300012948	Tropical Forest Soil	MLDDKDVVCFLRFEVERAGGQSSWARRQGIDRSALNRVLSGRKPPTKQIIRALRLCHLYALDAAPVANEEARHSVRRPG*
Ga0164298_101530542	3300012955	Soil	RPFDMGVETSAFAACELEEFPMEVRPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYALDDD*
Ga0164303_100555981	3300012957	Soil	PSWRAKLEEFPMGVRPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0164299_100311334	3300012958	Soil	MGVRPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPISKEIIRALKLCNVYALDDD*
Ga0164302_100569683	3300012961	Soil	MGVRPSSNLRILENEDLMRLLRSKVKQAGGQSSWARREHIDRTMLNKILNGRKPITKEVIRALKLCNVYAFDDD*
Ga0164302_103752631	3300012961	Soil	DHEIMRRLDKNGVVRLLATEIKRAGGQSSWARRERIDRTILNKVLRGRRPPTEESIRALKLCNMYEPDDCGAAD*
Ga0164309_103140672	3300012984	Soil	CELEEFPMGVRPSSNLRMLENEDLMRLLRSKVKQAGGQSSWARREHIDRTMLNKILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0164307_105605602	3300012987	Soil	LENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPISKEIIRALKLCNVYALDDD*
Ga0164306_100946072	3300012988	Soil	MGVQPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPISKEIIRALKLCNVYALDDD*
Ga0164305_101677961	3300012989	Soil	SSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0164305_102681623	3300012989	Soil	ENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNKILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0157369_105040753	3300013105	Corn Rhizosphere	RILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD*
Ga0157378_106087811	3300013297	Miscanthus Rhizosphere	EDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD
Ga0163162_125729991	3300013306	Switchgrass Rhizosphere	MGVRPSSNLRILENEDLMRLLRSKVKQAGGQSSWARREHIDRTVLNKILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0163163_114598121	3300014325	Switchgrass Rhizosphere	LMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0157380_123281262	3300014326	Switchgrass Rhizosphere	VACELEEFPMGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNKILNGRKPITKEVIRALKLCNVYAFDD*
Ga0157377_115404201	3300014745	Miscanthus Rhizosphere	RKSDLLPVRPLRAGKRRRQLEEEFPMGVRPSSKPPTLEKQDLMRLLRSQFKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD*
Ga0132257_1006073383	3300015373	Arabidopsis Rhizosphere	DKNGVVRLLACERKRAGGQSSWARRERIDRTILNKVLRGRKPPTEEIIRALKLCNMYEPDDCGAAD*
Ga0132257_1008875102	3300015373	Arabidopsis Rhizosphere	ENEDLMRLLRSKVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD*
Ga0132255_1019847032	3300015374	Arabidopsis Rhizosphere	MGRRLRRPFDMGVETSAFAACELEEFPMGVRPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD*
Ga0163161_101128882	3300017792	Switchgrass Rhizosphere	MGVLPSSNPRILESEGLMRRLRAEVKQAGGQSSWARREHIDRTMLNRILNGRKPITNEITRALKLCNVYAFDDD
Ga0163161_109558311	3300017792	Switchgrass Rhizosphere	MGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARRERIDRAMLNRVLNGRKPLTKEIIRALKLCNVYAFDGD
Ga0184610_11061893	3300017997	Groundwater Sediment	VRQISMRILDNKDVVRLLRSKVERAGGQSSWARRERIDRTLLNRVLNGHKPPSKEIIRALKLCNAYALEDDEVAN
Ga0184620_100254903	3300018051	Groundwater Sediment	MRILDNKDVVRLLRSKVERAGGQSSWARRERIDRTLLNRVLNGHKPPSKEIIRALKLCNAYALEDDEVAN
Ga0184611_11011242	3300018067	Groundwater Sediment	MGVLPSSNPRILESEGLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITNEIIRALKLCNVYAFDDD
Ga0184624_100800961	3300018073	Groundwater Sediment	MGVRPSSNLRIHESKGLMRLLRSEVKQAGGQSAWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD
Ga0184624_104331391	3300018073	Groundwater Sediment	VNLGGLCPSDQCAYFDNKGVVRLLRSKVERAGGQSSWARRERIDRTLLNRVLNGHKPPSKEIIRALKLCNAYALEDDEVAN
Ga0184625_100067911	3300018081	Groundwater Sediment	MRILDNKDVVRLLRSKVERAGGQSSWARRERIDRTLLNMVLNGHKPPSKEIIRALKLCNAVALEDDEVAN
Ga0184628_101365051	3300018083	Groundwater Sediment	FPMGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITNEIIRALKLCNVYAFDDD
Ga0190270_101696262	3300018469	Soil	MGVRPSSNLRIHESKGLMRLLRLEVKQAGGQSAWARREHIDRTMLNRMLNGCKPITKEIIRALKLCNVYALDDD
Ga0190270_111482901	3300018469	Soil	KGVVRLLRSKVERAGGQSSWARRERIDRTLLNMVLNGHKPPSKEIIRAHKCCNAYALEDDEVANWGRAPASSWER
Ga0190274_129380301	3300018476	Soil	VRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTLLNRILNGRKPINNEIIRALKLCNVYAFDDD
Ga0173481_104951951	3300019356	Soil	MGVETSAFAACELEEFPMGVRPSSNLRIQESKGLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD
Ga0210380_101268841	3300021082	Groundwater Sediment	MGVLPSSNPRILESEGLMRRLRAEVKQAGGQSSWARREHIDRTMLNRILNGRKPITNEIIRALKLCNVYAFDDD
Ga0247786_11054711	3300022883	Soil	MGVRPSSNLRMLEYEDLLRLLRSEVRQAGGQSSWARREHIDRTMLNRILNGRKPINKEIIRALKLCNIYAFDDD
Ga0207656_101938821	3300025321	Corn Rhizosphere	SSNLRILVMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD
Ga0207710_100574221	3300025900	Switchgrass Rhizosphere	MGRRLRRPFDMGVETSAFAACELEEFPMGVRPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD
Ga0207688_100081757	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MGRRLRRPFDMGVETSAFAACELEEFPMGVQPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYALDDD
Ga0207688_103576331	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MGVRPSSNLRMLEYEDLLRLLRSEVRQAGGQSSWARREHIDRTMLNRVLNGRKPINKEIIRALKL
Ga0207680_101816772	3300025903	Switchgrass Rhizosphere	MGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYALDDD
Ga0207685_102961052	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MGRRLRRPFDMGVETSAFAACELEEFPMGVRPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPISKEIIRALKLCNVYALDDD
Ga0207645_101045541	3300025907	Miscanthus Rhizosphere	RQGRRLRRPFDMGVETSAFAACELEEFPMGVQPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD
Ga0207643_100108133	3300025908	Miscanthus Rhizosphere	MGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD
Ga0207657_111885201	3300025919	Corn Rhizosphere	MGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPISKEIIRALKLCNVYALNDD
Ga0207649_102833971	3300025920	Corn Rhizosphere	KLEEFPMGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD
Ga0207687_104616392	3300025927	Miscanthus Rhizosphere	MGRRLRRPFDMGVETSAFAACELEEFPMGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD
Ga0207644_106686581	3300025931	Switchgrass Rhizosphere	PSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNKILNGRKPITKEIIRALKLCNVYAFDDD
Ga0207669_117111392	3300025937	Miscanthus Rhizosphere	MGVRPSSNLRILENEDLMRLLRSKVKQAGGQSSWARREHIDRTVLNKILNGRKPITKEIIRALKLCNVYAFDDD
Ga0207648_100317495	3300026089	Miscanthus Rhizosphere	MGRRLRRPFDMGVETSAFAACELEEFPMEVRPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD
Ga0207675_1016284211	3300026118	Switchgrass Rhizosphere	SEGLMRRLRAEVKQAGGQSSWARREHIDRTMLNRILNGRKPITNEIIRALKLCNVYAFDD
Ga0207683_100312596	3300026121	Miscanthus Rhizosphere	MGVRPSSNLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNKILNGRKPITKEIIRALKLCNVYAFDDD
Ga0268266_104157082	3300028379	Switchgrass Rhizosphere	MGVRPSSNQSVLENEDLMRLLRSEVKRAGGQSSWARREHIDRTMLNKILNGRKPITKEVIRALKLCNVYAFDDD
Ga0268266_122169462	3300028379	Switchgrass Rhizosphere	MLEYEDLLRLLRSEVRQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFD
Ga0307295_100240683	3300028708	Soil	VLVLDNEGVVHLLRSEVRRAGGQSSWARRERIDRTMLNRVLCGHNPPTEKIIRALKLCNVYVSDDDGVAN
Ga0307280_102715581	3300028768	Soil	RRDRQPGLDNEGVVRVLRLEVRRAGGQSSWARRERIDRTMLNRVLCGHKPPTEKIIRALKLCNAYASDDEVDK
Ga0307323_102394501	3300028787	Soil	MISLAPDWPCDNLRILDNKDLMRLLRLEVKQAGGQSSWARRERIDRTMLNRVLNGRKPLTKEIIRALKLCNVYAFDGD
Ga0307287_100015412	3300028796	Soil	MGVRPCDNLRILDNKDLMRLLRLEVKQAGGQSSWARRERSDRTMLNRVLNGRKPLTKEIIRALKLCNVYAFDGD
Ga0307503_100119402	3300028802	Soil	MGVLPSSNPRILESEGLMRRLRAEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYALDDD
Ga0307503_100813293	3300028802	Soil	WAEVVRQISMRILDNKDVVRLLRSKVERAGGQSSWARRERIDRTLLNRVLNGHKPPSKEIIRALKLCNAYALEDDEVAN
Ga0307312_108805022	3300028828	Soil	RPCDNLRILDNKDLMRLLRLEVKQAGGQSSWARRERIDRTMLNRVLNGRKPLTKEIIRALKLCNVYAFDGD
Ga0307286_102707131	3300028876	Soil	MGVRPCDNLRILDNKDLMRLLRLEVKQAGGQSSWARRERIDRTMLNRVLNGRKPLTKEIIRALKLCNVYAFDGD
Ga0308196_10076492	3300030989	Soil	MRILDNKDVVRLLRSKVERAGGQSSWARRERIDRTLLNRVLNGHKPPSKEIIRALKLRNACALEDDEVAN
Ga0308189_100284413	3300031058	Soil	QISMRILDNKDVVRLLRSKVERAGGQSSWARRERIDRTLLNRVLNGHKPPSKEIIRALKLCSAYALEDDEVAN
Ga0307499_102315141	3300031184	Soil	ILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD
Ga0307500_100731383	3300031198	Soil	ILEKKDLMRLLRSEVKQAGGQSAWARREHIDRTMLNRMLNGRKPITKEIIRALKLCNVCAFDDD
Ga0307500_103024211	3300031198	Soil	MGRRLRRPFDMGVETSAFAACELEEFPMGVQPSSNLRVLENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD
Ga0307497_103024311	3300031226	Soil	MGVETSAFAACELEEFPMGVQPSSNLRVLEDEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKKIIRALKLCNVYALDDD
Ga0318492_102803241	3300031748	Soil	MLDTKAVVRLLRSEVQRTGGQPSWARRQGIDRTMLNRVLRGRRVPTEEIIKALKLCNVY
Ga0306919_104085212	3300031879	Soil	MLDTKAVVRLLRSEVQRTGGQPSWARRQGIDRTMLNRVLRGRRVPTEEIIKALKLCNVYACNAKQSAE
Ga0310906_103335463	3300032013	Soil	FPMGVRPSSDLRILENEDLMRLLRSEVKQAGGQSSWARREHIDRTMLNRILNGRKPITKEIIRALKLCNVYAFDDD
Ga0310890_105178022	3300032075	Soil	MGVRPSSNLRILENEDLMRLLRSKVKQAGGQSSWARREHIDRTMLNKILNGRKPITKEIIRALKLCNVYAFDDD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054172

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences