NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F054026

Metagenome / Metatranscriptome Family F054026

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F054026
Family Type Metagenome / Metatranscriptome
Number of Sequences 140
Average Sequence Length 42 residues
Representative Sequence MLRTTPLQPSIALDRNKATRTKQGEGEEEVGKKKFAAEPP
Number of Associated Samples 67
Number of Associated Scaffolds 140

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 5.76 %
% of genes near scaffold ends (potentially truncated) 72.14 %
% of genes from short scaffolds (< 2000 bps) 94.29 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction Yes
3D model pTM-score0.13

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (97.857 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater
(24.286 % of family members)
Environment Ontology (ENVO) Unclassified
(54.286 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(51.429 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 8.82%    β-sheet: 0.00%    Coil/Unstructured: 91.18%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.13
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 140 Family Scaffolds
PF01436NHL 0.71



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A97.86 %
All OrganismsrootAll Organisms2.14 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002447|JGI24768J34885_10086656Not Available1049Open in IMG/M
3300002447|JGI24768J34885_10145478Not Available798Open in IMG/M
3300002447|JGI24768J34885_10155198Not Available772Open in IMG/M
3300002447|JGI24768J34885_10280498Not Available560Open in IMG/M
3300002447|JGI24768J34885_10319781Not Available520Open in IMG/M
3300003413|JGI25922J50271_10058678Not Available851Open in IMG/M
3300003497|JGI25925J51416_10123123Not Available604Open in IMG/M
3300003754|Ga0005853_1012095Not Available503Open in IMG/M
3300003754|Ga0005853_1015296Not Available732Open in IMG/M
3300004763|Ga0007746_1429260Not Available1741Open in IMG/M
3300004790|Ga0007758_11342897Not Available633Open in IMG/M
3300005420|Ga0068879_1026979Not Available1071Open in IMG/M
3300005525|Ga0068877_10668776Not Available558Open in IMG/M
3300005527|Ga0068876_10060604Not Available2293Open in IMG/M
3300005527|Ga0068876_10614560Not Available587Open in IMG/M
3300005565|Ga0068885_1003204Not Available2126Open in IMG/M
3300005582|Ga0049080_10132908Not Available838Open in IMG/M
3300005662|Ga0078894_11364914Not Available593Open in IMG/M
3300005662|Ga0078894_11517609Not Available555Open in IMG/M
3300006484|Ga0070744_10178794Not Available606Open in IMG/M
3300007545|Ga0102873_1191849Not Available614Open in IMG/M
3300007560|Ga0102913_1046147Not Available1424Open in IMG/M
3300007629|Ga0102895_1093390Not Available776Open in IMG/M
3300007636|Ga0102856_1055359Not Available631Open in IMG/M
3300008108|Ga0114341_10187999Not Available1166Open in IMG/M
3300008108|Ga0114341_10417244Not Available643Open in IMG/M
3300008108|Ga0114341_10420715Not Available638Open in IMG/M
3300008108|Ga0114341_10480192Not Available568Open in IMG/M
3300008111|Ga0114344_1163480Not Available747Open in IMG/M
3300008113|Ga0114346_1201105Not Available795Open in IMG/M
3300008114|Ga0114347_1113379All Organisms → Viruses → Predicted Viral1027Open in IMG/M
3300008114|Ga0114347_1160009Not Available797Open in IMG/M
3300008116|Ga0114350_1104162Not Available889Open in IMG/M
3300008116|Ga0114350_1157290Not Available623Open in IMG/M
3300008116|Ga0114350_1173704Not Available564Open in IMG/M
3300008116|Ga0114350_1187712Not Available524Open in IMG/M
3300008117|Ga0114351_1267132Not Available835Open in IMG/M
3300008119|Ga0114354_1223050Not Available632Open in IMG/M
3300008119|Ga0114354_1227238Not Available621Open in IMG/M
3300008258|Ga0114840_1049936Not Available661Open in IMG/M
3300008259|Ga0114841_1040549All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium2327Open in IMG/M
3300008259|Ga0114841_1065730Not Available1699Open in IMG/M
3300008259|Ga0114841_1083446Not Available1440Open in IMG/M
3300008259|Ga0114841_1104455Not Available1222Open in IMG/M
3300008259|Ga0114841_1119417Not Available1106Open in IMG/M
3300008259|Ga0114841_1196288Not Available735Open in IMG/M
3300008259|Ga0114841_1233055Not Available623Open in IMG/M
3300008259|Ga0114841_1252422Not Available573Open in IMG/M
3300008259|Ga0114841_1260250All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Pavlovales → Pavlovaceae → Diacronema → Diacronema lutheri555Open in IMG/M
3300008259|Ga0114841_1271349Not Available534Open in IMG/M
3300008259|Ga0114841_1280903Not Available517Open in IMG/M
3300008261|Ga0114336_1081626Not Available1566Open in IMG/M
3300008261|Ga0114336_1354474Not Available525Open in IMG/M
3300008262|Ga0114337_1352131Not Available500Open in IMG/M
3300012714|Ga0157601_1216164Not Available910Open in IMG/M
(restricted) 3300013132|Ga0172372_10698531Not Available641Open in IMG/M
3300017788|Ga0169931_10757509Not Available630Open in IMG/M
3300020159|Ga0211734_10779371Not Available719Open in IMG/M
3300020162|Ga0211735_11000064Not Available1205Open in IMG/M
3300020172|Ga0211729_10462496Not Available540Open in IMG/M
3300020205|Ga0211731_10490838Not Available1307Open in IMG/M
3300020205|Ga0211731_10760709Not Available635Open in IMG/M
3300024863|Ga0255246_1083814Not Available745Open in IMG/M
3300027260|Ga0208027_1100545Not Available543Open in IMG/M
3300027263|Ga0208446_1069134Not Available641Open in IMG/M
3300027679|Ga0209769_1150068Not Available738Open in IMG/M
3300027772|Ga0209768_10215927Not Available852Open in IMG/M
3300027793|Ga0209972_10452785Not Available535Open in IMG/M
3300027806|Ga0209985_10205097Not Available935Open in IMG/M
3300027836|Ga0209230_10069341Not Available1898Open in IMG/M
3300027836|Ga0209230_10459589Not Available725Open in IMG/M
3300027836|Ga0209230_10557719Not Available645Open in IMG/M
3300027836|Ga0209230_10589777Not Available623Open in IMG/M
3300027836|Ga0209230_10645838Not Available588Open in IMG/M
3300027836|Ga0209230_10723151Not Available547Open in IMG/M
3300027836|Ga0209230_10724115Not Available546Open in IMG/M
3300027836|Ga0209230_10750311Not Available534Open in IMG/M
3300027836|Ga0209230_10796627Not Available513Open in IMG/M
(restricted) 3300028557|Ga0247832_1301806Not Available516Open in IMG/M
3300031758|Ga0315907_10510776Not Available949Open in IMG/M
3300031758|Ga0315907_10526945Not Available930Open in IMG/M
3300031758|Ga0315907_10560106Not Available893Open in IMG/M
3300031758|Ga0315907_10705154Not Available767Open in IMG/M
3300031758|Ga0315907_11037803Not Available588Open in IMG/M
3300031758|Ga0315907_11121423Not Available557Open in IMG/M
3300031758|Ga0315907_11277949Not Available508Open in IMG/M
3300031784|Ga0315899_10106653Not Available2880Open in IMG/M
3300031784|Ga0315899_10167711Not Available2230Open in IMG/M
3300031784|Ga0315899_10252392Not Available1759Open in IMG/M
3300031784|Ga0315899_10367203Not Available1407Open in IMG/M
3300031784|Ga0315899_10946563Not Available771Open in IMG/M
3300031786|Ga0315908_10376941Not Available1187Open in IMG/M
3300031786|Ga0315908_10664723Not Available861Open in IMG/M
3300031786|Ga0315908_10932597Not Available702Open in IMG/M
3300031786|Ga0315908_11158674Not Available615Open in IMG/M
3300031786|Ga0315908_11178005Not Available609Open in IMG/M
3300031787|Ga0315900_10446932Not Available1001Open in IMG/M
3300031787|Ga0315900_10485846Not Available941Open in IMG/M
3300031857|Ga0315909_10497862Not Available842Open in IMG/M
3300031857|Ga0315909_10678208Not Available673Open in IMG/M
3300031963|Ga0315901_10958203Not Available602Open in IMG/M
3300032092|Ga0315905_10071485Not Available3513Open in IMG/M
3300032092|Ga0315905_10109758Not Available2776Open in IMG/M
3300032092|Ga0315905_10323478Not Available1472Open in IMG/M
3300032092|Ga0315905_10772623Not Available840Open in IMG/M
3300032092|Ga0315905_10841463Not Available792Open in IMG/M
3300032092|Ga0315905_11002134Not Available702Open in IMG/M
3300032092|Ga0315905_11245743Not Available603Open in IMG/M
3300032092|Ga0315905_11310632Not Available582Open in IMG/M
3300032092|Ga0315905_11522943Not Available523Open in IMG/M
3300032116|Ga0315903_10882567Not Available641Open in IMG/M
3300032116|Ga0315903_11041166Not Available568Open in IMG/M
3300033979|Ga0334978_0377411Not Available670Open in IMG/M
3300033980|Ga0334981_0164889Not Available1053Open in IMG/M
3300034019|Ga0334998_0544496Not Available640Open in IMG/M
3300034023|Ga0335021_0612576Not Available539Open in IMG/M
3300034063|Ga0335000_0395528Not Available823Open in IMG/M
3300034066|Ga0335019_0279726Not Available1053Open in IMG/M
3300034066|Ga0335019_0685917Not Available590Open in IMG/M
3300034095|Ga0335022_0173431Not Available1314Open in IMG/M
3300034095|Ga0335022_0194908Not Available1218Open in IMG/M
3300034095|Ga0335022_0369162Not Available786Open in IMG/M
3300034095|Ga0335022_0380806Not Available769Open in IMG/M
3300034095|Ga0335022_0462026Not Available670Open in IMG/M
3300034095|Ga0335022_0507606Not Available627Open in IMG/M
3300034095|Ga0335022_0587303Not Available565Open in IMG/M
3300034095|Ga0335022_0644987Not Available528Open in IMG/M
3300034103|Ga0335030_0826161Not Available540Open in IMG/M
3300034109|Ga0335051_0295567Not Available786Open in IMG/M
3300034112|Ga0335066_0428270Not Available716Open in IMG/M
3300034116|Ga0335068_0462937Not Available594Open in IMG/M
3300034119|Ga0335054_0708861Not Available539Open in IMG/M
3300034121|Ga0335058_0609926Not Available610Open in IMG/M
3300034121|Ga0335058_0783540Not Available520Open in IMG/M
3300034167|Ga0335017_0313662Not Available870Open in IMG/M
3300034167|Ga0335017_0571384Not Available589Open in IMG/M
3300034357|Ga0335064_0210385Not Available1227Open in IMG/M
3300034357|Ga0335064_0471178Not Available798Open in IMG/M
3300034357|Ga0335064_0589341Not Available698Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater24.29%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater22.14%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton21.43%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake10.71%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment10.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine4.29%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater3.57%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment1.43%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic0.71%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.71%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.71%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002447Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion MetagenomeEnvironmentalOpen in IMG/M
3300003413Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DDEnvironmentalOpen in IMG/M
3300003497Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DNEnvironmentalOpen in IMG/M
3300003754Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004763Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004790Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005420Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005525Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaGEnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005565Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel7S_1600h metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300007545Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3EnvironmentalOpen in IMG/M
3300007560Estuarine microbial communities from the Columbia River estuary - metaG 1560A-02EnvironmentalOpen in IMG/M
3300007629Estuarine microbial communities from the Columbia River estuary - metaG 1554B-3EnvironmentalOpen in IMG/M
3300007636Estuarine microbial communities from the Columbia River estuary - metaG 1371A-3EnvironmentalOpen in IMG/M
3300008108Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NAEnvironmentalOpen in IMG/M
3300008111Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NAEnvironmentalOpen in IMG/M
3300008113Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NAEnvironmentalOpen in IMG/M
3300008114Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NAEnvironmentalOpen in IMG/M
3300008116Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NAEnvironmentalOpen in IMG/M
3300008117Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008119Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NAEnvironmentalOpen in IMG/M
3300008258Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NAEnvironmentalOpen in IMG/M
3300008259Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NAEnvironmentalOpen in IMG/M
3300008261Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NAEnvironmentalOpen in IMG/M
3300008262Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NAEnvironmentalOpen in IMG/M
3300012714Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES125 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300017788Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20LEnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300024863Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_0h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300027260Estuarine microbial communities from the Columbia River estuary - metaG 1563A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027263Estuarine microbial communities from the Columbia River estuary - metaG 1569A-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027679Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027772Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027793Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027806Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027836Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028557 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_4mEnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031784Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112EnvironmentalOpen in IMG/M
3300031786Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032092Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300033979Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003EnvironmentalOpen in IMG/M
3300033980Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007EnvironmentalOpen in IMG/M
3300034019Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049EnvironmentalOpen in IMG/M
3300034023Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090EnvironmentalOpen in IMG/M
3300034063Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053EnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034095Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091EnvironmentalOpen in IMG/M
3300034103Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119EnvironmentalOpen in IMG/M
3300034109Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158EnvironmentalOpen in IMG/M
3300034112Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191EnvironmentalOpen in IMG/M
3300034116Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOREnvironmentalOpen in IMG/M
3300034119Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166EnvironmentalOpen in IMG/M
3300034121Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174EnvironmentalOpen in IMG/M
3300034167Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082EnvironmentalOpen in IMG/M
3300034357Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI24768J34885_1008665613300002447Freshwater And SedimentLRTTLLQPSIALDRNKATRAKPVKGEEVVGKKKIAAEPP*
JGI24768J34885_1014547813300002447Freshwater And SedimentMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKQFAAEPP*
JGI24768J34885_1015519823300002447Freshwater And SedimentMLRTTLLQPSIALDRNQTSLTKQGEGEEVVGKKKFAAEPLSIQTN*
JGI24768J34885_1028049813300002447Freshwater And SedimentYTLACCALLLQPSIALDRNEATRAKPVKGEEVVGKKKFAAEPLSIQTN*
JGI24768J34885_1031978113300002447Freshwater And SedimentIHIGMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKNLQLSHPSIQ*
JGI25922J50271_1005867813300003413Freshwater LakeMLRTTLLQPSIALDRNEATRAKPGKGEEVVGKKKFAAEPLSIQTN*
JGI25925J51416_1012312323300003497Freshwater LakeMLRTTLLQPSIALDRNEATRAKPGKGEEVVGKKNLQLSHPSIQIITYRAP
Ga0005853_101209513300003754Freshwater And SedimentMLRTTPLQPSIALDRNKATRAKPVKGEEVVGKKKFAAEPP*
Ga0005853_101529613300003754Freshwater And SedimentMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKFAAEPPSIQ
Ga0007746_142926023300004763Freshwater LakeMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKFAAEPLSIQTN*
Ga0007758_1134289713300004790Freshwater LakeGMLRTTPLQPSIALDRNKATRAKPGKGEEEVGKKKFAAEPS*
Ga0068879_102697923300005420Freshwater LakeLLQPSIALDRNEATRAKPGKGEEVVGKKKFAAEPLSIQTN*
Ga0068877_1066877613300005525Freshwater LakeLQPSIALDRNEATRAKPIKGEEVVGKKKFAAEPPEYSNHYI*
Ga0068876_1006060433300005527Freshwater LakeIRVYAYCVDTIGMLRTTPLQPSIALDRNQTSLTNQGEGEEEVGKKNCT*
Ga0068876_1061456013300005527Freshwater LakeRTTPLQPSIALDRNKATRAKPIKGEEVVGKKKFAAEPP*
Ga0068885_100320433300005565Freshwater LakeMLRTTLLQPSIALDRNEATRAKPIKGEEVVGKKKFAAKPLSIQTN*
Ga0049080_1013290813300005582Freshwater LenticMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKLQLSH
Ga0078894_1136491413300005662Freshwater LakeIHIGMLRTTPLQPSIALDRNKATRAKPVKGEEVLGKKKICS*
Ga0078894_1151760913300005662Freshwater LakeTPLQPSIALDRNQTSLTKQGEGEEEVSKKKLQLSHLSIQTNDI*
Ga0070744_1017879423300006484EstuarineMLRTTLLQPSIALDRNEATRAKPVKGEEAVGKKNLQLSHPSIQ
Ga0102873_119184923300007545EstuarineMLRTTPLQPSIALDRNKATRTKQGEGEEEVGKKKIAAEPLKYSNQLHIDLP*
Ga0102913_104614713300007560EstuarineIHIGMLRTTPLQPSMALDRNQTSLTKQGEDEEEVGKKNCS*
Ga0102895_109339013300007629EstuarineMLRTTPLQPSIALDRNKATRTKQGEGEEEVGKKKFAAEPP*
Ga0102856_105535913300007636EstuarineMMRTTPLQPSIALDRNQTSLTKQGKGEEEVGKKKFAA
Ga0114341_1018799923300008108Freshwater, PlanktonMLRTTPLQPSIALDRNNANAKKQAKKKLQLSHLSIQTNTY
Ga0114341_1041724413300008108Freshwater, PlanktonIHIGMLRTTPLQPSIALDRNKATRTKQGEGEEEVGKKNCS*
Ga0114341_1042071523300008108Freshwater, PlanktonIHIGMLRTTLLQPSIALDRNEATRAKPIKGEEVVGKKKFAAEPPEYSNHYI*
Ga0114341_1048019213300008108Freshwater, PlanktonMLRTTPLQPSITLDRNKATRAKPIKGEEVVGKKNLQLSHSVFKQTIY
Ga0114344_116348013300008111Freshwater, PlanktonIHIGMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKICS*
Ga0114346_120110513300008113Freshwater, PlanktonIHIGMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKICS*
Ga0114347_111337913300008114Freshwater, PlanktonIHIGMLRTTPLQPSIALDRNKATRTKQGEGEEEVGKKKLQMSH*
Ga0114347_116000913300008114Freshwater, PlanktonAYCVDTHGMLRTTPLQPSIALDRNKATRAKPVKGEEVVGKKKFAAEPP*
Ga0114350_110416213300008116Freshwater, PlanktonGMLRTTLLQPSIALDRNEATRAKPIKGEEVVGKKKICS*
Ga0114350_115729013300008116Freshwater, PlanktonRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKFAAEPLSIQANHI*
Ga0114350_117370413300008116Freshwater, PlanktonLQPSIALDRNKATRAKPVKGEEVVGKKKFAAEPP*
Ga0114350_118771213300008116Freshwater, PlanktonMLRTTPLQPSIALDRNKATRAKPIKGEEVVGKKKFAAEP
Ga0114351_126713213300008117Freshwater, PlanktonIHIGMLRTTPLQPSIALDRNKATRAKPIKGEEVVGKKKFAAEPP*
Ga0114354_122305013300008119Freshwater, PlanktonIHIGMLRTTPLQPSIALDRNKATRTKQGEGEEEVGKKKLQLSH*
Ga0114354_122723813300008119Freshwater, PlanktonTTLLQPSIALDRNEATRAKPVKGEEVVGKKKNLQLSHPSIQTNYI*
Ga0114840_104993613300008258Freshwater, PlanktonMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKF
Ga0114841_104054923300008259Freshwater, PlanktonMLRTTPLQPSIALDRNKATRTKQGEGEEEVGKKTKFAAEPP*
Ga0114841_106573013300008259Freshwater, PlanktonMLRTTPLQPSIALDRNQTSPTKQGEGEEEVGKKKIAAEPLKYSNYM*
Ga0114841_108344623300008259Freshwater, PlanktonMLRTTPLQPSIALDRNKATRTKQGKGEEEVGKKKIAAEPPNAN*
Ga0114841_110445513300008259Freshwater, PlanktonMNLNVMLRTTPLQPSIALDRNQTSLTKQGEDEEEVGKKKLQLSH*
Ga0114841_111941713300008259Freshwater, PlanktonMLRTTPLQPSIALNRNKATRTKQGEGEEEIGKKKLQLSH*
Ga0114841_119628813300008259Freshwater, PlanktonMLRTTPLQPSIALDRNQTSLTTQGEGEEEVGKKQLQLSHRGVQTNI*
Ga0114841_123305513300008259Freshwater, PlanktonMLRTTPLQPSIALDRNQTSLTKQGEGEEEVGKKKNLQLSHPSIQTN*
Ga0114841_125242213300008259Freshwater, PlanktonHIGMLRTTPLQPSIALDRNKATRTKQGEGEEEVGKKKNCS*
Ga0114841_126025013300008259Freshwater, PlanktonMLRTTPLQPSIALDRNQTSLTKQGEGEEVGKKKLQLSHLSIQTN
Ga0114841_127134913300008259Freshwater, PlanktonMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKNL
Ga0114841_128090323300008259Freshwater, PlanktonMLRTTPLQPSIALDRNQTSLTKQGEGEEEVGKKQIAAEPLKYSNHYI*
Ga0114336_108162613300008261Freshwater, PlanktonMLRTTPLQTSISLDRNKATRTKQGEGEEEVGKKKNAAEPQSA
Ga0114336_135447413300008261Freshwater, PlanktonTTLLQPAIALDRNEATRAKPGKGEEVVGKKKFAAEPP*
Ga0114337_135213113300008262Freshwater, PlanktonMLRTTLLQPSIALDRNKATRTKQGEGEEEVGKKKIAAGALEYSNQLHIDR
Ga0157601_121616423300012714FreshwaterTHGMLRTTPLQPSIALDRNKATRAKPVKGEEEVGKKNLQLSHPSIQTNYIQSASCLHPR*
(restricted) Ga0172372_1069853123300013132FreshwaterMLRTTPLQPSIALDRNKATRAKPVKGEEEEKFAAEPP*
Ga0169931_1075750913300017788FreshwaterMLRTTPLQPSIALDRNKATRAKPVKGEEEVGKKNLQLSHPSI
Ga0211734_1077937113300020159FreshwaterMLRTTLLQPSIALDRNEATRAKPIKGEEVVGKKKICS
Ga0211735_1100006413300020162FreshwaterMLRTTPLQPSIALDRNKATRTKQGEGEEEVGKKKLQLSH
Ga0211729_1046249613300020172FreshwaterGMLRTTPLQPSIALDRNKATRTKQGEGEEEVGKKNLQLSHPSIQTNYIQSASCLHPR
Ga0211731_1049083813300020205FreshwaterLRTTLLQPSIALDRNEATRAKPGKGEEVVGKKKFAAEPP
Ga0211731_1076070913300020205FreshwaterMLRTTPLPPSIALDRNQTSLTKQGKGEEEVGKKKIAAEPLKYSN
Ga0255246_108381413300024863FreshwaterMLRTTLLQPSIALDRNEATRAKPIKGEEVVGKKKFAAEPLSIQTN
Ga0208027_110054513300027260EstuarineMLRTTLLQPSIALDRNEATRAKPVKGEEGVGKKKFAA
Ga0208446_106913413300027263EstuarineMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKFAAE
Ga0209769_115006813300027679Freshwater LakeVYAYCVDTHGMLRTTPLQPWIALDRNKATRTKQDECEEEVGKKKFAAEPP
Ga0209768_1021592713300027772Freshwater LakeHLGMLRTTLLQPSIALDRNEATRAKPGKGEEVVGKKKFAAEPLSIQTN
Ga0209972_1045278513300027793Freshwater LakeHIGMLRTTLLQPSIALDRNEATRAKPGKGEEVVGKKKFAAEPLSIQTN
Ga0209985_1020509713300027806Freshwater LakeYCVIHIGMLRTTLLQPSIALDRNEATRAKPGKGEEVVGKKKFAAEPLSIQTN
Ga0209230_1006934113300027836Freshwater And SedimentMLRTTFLQPSIALDRNQTSLTKQGEGEEEVGKKKLQLSHLSIQTKDI
Ga0209230_1045958923300027836Freshwater And SedimentLSVYADCVDTHGMLRTTPLQPSIALDRNKATRTRQGECKEEVGKKNCS
Ga0209230_1055771913300027836Freshwater And SedimentPLQPSITLDRNKATRAKPVKGEEVVGKKKFAAEPP
Ga0209230_1058977713300027836Freshwater And SedimentMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKFA
Ga0209230_1064583813300027836Freshwater And SedimentLLQPSIALDRNEATRAKPVKGEEVVGKKKFAAEPP
Ga0209230_1072315123300027836Freshwater And SedimentIHIGMLRTTPLQPSIALDRNQTSLTKQGEGEEEVSKKKLQLSHLSIQTNDI
Ga0209230_1072411513300027836Freshwater And SedimentIHIGMLRTTPLQPSIALDRNKATRAKPIKGEEVVGKKKFAAEPP
Ga0209230_1075031113300027836Freshwater And SedimentMLRTTPLQPSIALDRNKATRTKQGKGEEEVGKKKIAAEPPNAN
Ga0209230_1079662713300027836Freshwater And SedimentCVDTHGMLRTTPLQPSIALDRNQTSLTKQGEGEEEVGKKNLQLSHLSIQTNDI
(restricted) Ga0247832_130180613300028557FreshwaterDYCVDTHGMLRTTPLQPSIALDRNKATRAKPVKGEEEVGKKKFAAEPP
Ga0315907_1051077613300031758FreshwaterMLRTTPLQPSIALDRNKATRTKQGEGEEEVGKNKIAAEPP
Ga0315907_1052694513300031758FreshwaterMLRTTPLQPSIALDRNKATRTKQGECKEEVGKKKLQLSHL
Ga0315907_1056010613300031758FreshwaterHIGMLRTTLLQPSIALDRNEATRAKPGKGEEVVGKKKFAAEPP
Ga0315907_1070515413300031758FreshwaterRTTPLQPSIALDRNKATRTKQGEGEEEVGKKKKLQLSH
Ga0315907_1103780313300031758FreshwaterPSISLDRNKATRTKQGEGEEEVGKKKLQLSHRSIQTTYI
Ga0315907_1112142313300031758FreshwaterIHIGMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKICS
Ga0315907_1127794913300031758FreshwaterLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKFAAEPP
Ga0315899_1010665343300031784FreshwaterMNLNVMLRTTPLQPSIALDRNQTSLTKQGEDEEEVGKKKLQLSH
Ga0315899_1016771143300031784FreshwaterMLRTTPLQPSIALDRNKATRAKPIKGEEVVGKKKFAAE
Ga0315899_1025239233300031784FreshwaterMLRTTPLQPSIALDRNKATRTKQGEGEEEVGKKKKLQLSH
Ga0315899_1027506043300031784FreshwaterAYCVIHIGMLRTTLLQPSIALDRNEATRAKPGKGEEVVGKKKFAAEPLSIQTN
Ga0315899_1036720313300031784FreshwaterMLRTTPLQPSIDLDRNKATRTKQGEGEEEVGKKKIAT
Ga0315899_1094656323300031784FreshwaterMLRTTPLQPSITLDRNKATRTKQGEGEEEVDKKKLQLSH
Ga0315908_1037694113300031786FreshwaterMLRTTPLQPSIALDRNKATRVKPVKGEEEVGKKKKFAAEPP
Ga0315908_1066472313300031786FreshwaterTPLQPSIALDRNQTSLTKQGEGKEEVGKKKLQLSH
Ga0315908_1093259713300031786FreshwaterIHIGMLRTTPLQPSISLDRNKATRTKQGEGEEEVGKKKLQLSHRSIQTTYI
Ga0315908_1115867423300031786FreshwaterMLRTTPLQPSIALDRNQTSLTKQGKGEEEVGKKKIAAEPLKYS
Ga0315908_1117800513300031786FreshwaterMLRTTPLQPSIALDRNQTSPTKQGEGEEEVGKKKIAAEPLKYSNYM
Ga0315900_1044693223300031787FreshwaterPLQPSIALDRNQTTRTKQGEGEEEVGKKKLQLSHLSIQTNDI
Ga0315900_1048584613300031787FreshwaterMLRTTLLQPSIALDRNEATRAKPIKGEEVVGKKNLQLSHPSIQIITYR
Ga0315909_1049786213300031857FreshwaterTLLQPSIALDRNEATRAKPIKGEEVVGKKKKFAAEPPEYSNHHI
Ga0315909_1067820813300031857FreshwaterMLRTTPLQPSIALDRNQTSLTTQGEGEEEVGKKQLQLSHRGVQTNI
Ga0315901_1095820313300031963FreshwaterMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKNLQ
Ga0315905_1007148533300032092FreshwaterMLRTTPLQRSIALDRNQTSLTKQGEGEEEVGKKKLQLSH
Ga0315905_1010975833300032092FreshwaterMLRTTPLQPSIALDRNKATRTKQGEGEEEVGKKTKFAAEPP
Ga0315905_1032347833300032092FreshwaterTTPLQPSIALDRNKATRTKQGEGEEEVGKKKKLQLSH
Ga0315905_1077262323300032092FreshwaterMFHTTPLQPSIALDRNKATRTKQGEGEEEVGKKKIA
Ga0315905_1084146313300032092FreshwaterIGMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKICS
Ga0315905_1100213413300032092FreshwaterLRTTPLQPSIALDRNKATRAKPVKGEEVVGKKKFAAEPP
Ga0315905_1124574313300032092FreshwaterMLRTTPLQPSIALDRNQTSLTKQGEGEEEVGKKKNLQLSHPSIQTN
Ga0315905_1131063213300032092FreshwaterMLRTTPLQPSIALDRNKATRAKPVKSEEEVGTKKKIAAEPP
Ga0315905_1152294323300032092FreshwaterLRTTLLQPSIALDRNEATRAKPGKGEEVVGKKKFAAEPLSIQTN
Ga0315903_1088256713300032116FreshwaterRTTPLQPSIALDRNKATRTKQGEGEEEVGKKKLQLSH
Ga0315903_1104116613300032116FreshwaterKHIGMLRTTPLQPSIALDRNKATRTKQGEGEEEVGKKKCS
Ga0334978_0377411_242_3793300033979FreshwaterMLRTTLLQPSIALDRNEATRAKPGKGEEVVGKKKFAAEPLSIQTN
Ga0334981_0164889_87_2063300033980FreshwaterMLRTTPLQPSIALDRNQTSLTKQGEGEEEVGKKKLQLSH
Ga0334998_0544496_505_6393300034019FreshwaterIHIGMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKFAAEPP
Ga0335021_0612576_2_1183300034023FreshwaterRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKFAAEPP
Ga0335000_0395528_1_1083300034063FreshwaterMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKNLQ
Ga0335019_0279726_903_10523300034066FreshwaterVHLGMLRTTLLQPSIALDRNEATRAKPGKGEEVVGKKKFAAEPLSIQTN
Ga0335019_0685917_266_4363300034066FreshwaterMLSTTPLQPSIALDRNKVTRTKQGEGEEEVGKKNLQLSHLSFQTNYIQSASCFHPI
Ga0335022_0173431_454_5673300034095FreshwaterMLRTTPLQPSIALDRNKTTGTKQGEGKEEVGKKKICS
Ga0335022_0194908_1113_12173300034095FreshwaterMLRTTPLQPWIALDRNKATRTKQGEGEEEVGKKKF
Ga0335022_0369162_620_7423300034095FreshwaterMLRTTPLQPSIALDRNQTSLTKQGKGEEEVGKKKFAAEPP
Ga0335022_0380806_142_2853300034095FreshwaterMLRTTPLQPSIALDRNQTSLTKQGEGEEEVGKKKFAAEPPEYSNKLI
Ga0335022_0462026_3_1463300034095FreshwaterMLRTTPLQPSIALDRNQTSLTKQGEGEEEVGKKKVAAEPLKYSNQLHI
Ga0335022_0507606_482_6253300034095FreshwaterMLRTTPLQPSIALDRNQTSLTKQDEGEEEVGKKKLQLSHLSIQTNDI
Ga0335022_0587303_375_4943300034095FreshwaterMLRTTPLQPSIALDRNQTSLTKQGEGKEEVGKKKLQLSH
Ga0335022_0644987_1_1323300034095FreshwaterHIGMLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKFAAEPP
Ga0335030_0826161_3_1313300034103FreshwaterMLRTTLLQPSIALDRNEATRAKPGKGEEVVGKKKFAAEPLSIQ
Ga0335051_0295567_657_7853300034109FreshwaterLRTTLLQPSIALDRNEATRAKPGKGEEVVGKKNLQLSHPSIQ
Ga0335066_0428270_557_7153300034112FreshwaterPTAIHIGMLRTTLLQPSIALDRNEATRAKPGKGEEVVGKKKFAAEPLSIQTN
Ga0335068_0462937_453_5663300034116FreshwaterMLRTTPLQPSIALDRNKATRTKQGEGEEEVGKKKYCS
Ga0335054_0708861_3_1133300034119FreshwaterSIALDRNEATRAKPGKGEEVVGKKKFAAEPLSIQTN
Ga0335058_0609926_422_5563300034121FreshwaterMLRTTPLQPSIALDRNKATRTKQGECEEEVGNFVFADEPPKYSN
Ga0335058_0783540_397_5193300034121FreshwaterMLRTTLLQPSIALDRNQTSLTKQGEGEEVVGKKNLQLSHPS
Ga0335017_0313662_1_1233300034167FreshwaterLRTTLLQPSIALDRNEATRAKPVKGEEVVGKKKKFAAEPP
Ga0335017_0571384_462_5873300034167FreshwaterMLRTTPLQPSIALDRNKATRAKPVKGEEEVGKKKLQLSHPSI
Ga0335064_0210385_3_1223300034357FreshwaterMLRTTLLQPSIALDRNEATRAKPGKGEEVVGKKKFAAEPL
Ga0335064_0471178_618_7373300034357FreshwaterMLRTTPLQPSIALDRNKATRTKQGEGEEEVGKKKLQMSH
Ga0335064_0589341_589_6963300034357FreshwaterMLRTTPLQPSIALDRNKATRAKPVKGEEVVGKKKIL


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