NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F054021

Metagenome / Metatranscriptome Family F054021

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F054021
Family Type Metagenome / Metatranscriptome
Number of Sequences 140
Average Sequence Length 50 residues
Representative Sequence AAYAHGLALALPEKVEMARPTGVGRAISTYTIPIEGRDEWLAAARRLA
Number of Associated Samples 120
Number of Associated Scaffolds 140

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 24.46 %
% of genes near scaffold ends (potentially truncated) 70.00 %
% of genes from short scaffolds (< 2000 bps) 70.00 %
Associated GOLD sequencing projects 115
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (93.571 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment
(17.143 % of family members)
Environment Ontology (ENVO) Unclassified
(20.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(33.571 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 18.42%    β-sheet: 0.00%    Coil/Unstructured: 81.58%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 140 Family Scaffolds
PF00196GerE 12.14
PF02909TetR_C_1 8.57
PF14329DUF4386 5.71
PF00126HTH_1 5.71
PF08281Sigma70_r4_2 2.86
PF00440TetR_N 2.86
PF04542Sigma70_r2 2.86
PF00005ABC_tran 2.86
PF07676PD40 2.14
PF08031BBE 1.43
PF00753Lactamase_B 1.43
PF02195ParBc 1.43
PF13602ADH_zinc_N_2 1.43
PF04075F420H2_quin_red 1.43
PF01555N6_N4_Mtase 1.43
PF07690MFS_1 0.71
PF08240ADH_N 0.71
PF08241Methyltransf_11 0.71
PF01510Amidase_2 0.71
PF12704MacB_PCD 0.71
PF12840HTH_20 0.71
PF01022HTH_5 0.71
PF13560HTH_31 0.71
PF13384HTH_23 0.71
PF01381HTH_3 0.71
PF13460NAD_binding_10 0.71
PF06897DUF1269 0.71
PF02223Thymidylate_kin 0.71
PF01643Acyl-ACP_TE 0.71
PF01595CNNM 0.71
PF14333DUF4389 0.71
PF01636APH 0.71
PF13556HTH_30 0.71
PF13474SnoaL_3 0.71
PF01055Glyco_hydro_31 0.71
PF00581Rhodanese 0.71
PF01329Pterin_4a 0.71
PF01925TauE 0.71

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 140 Family Scaffolds
COG1309DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmATranscription [K] 8.57
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 2.86
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 2.86
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 2.86
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 2.86
COG0277FAD/FMN-containing lactate dehydrogenase/glycolate oxidaseEnergy production and conversion [C] 1.43
COG0863DNA modification methylaseReplication, recombination and repair [L] 1.43
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 1.43
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 1.43
COG0125Thymidylate kinaseNucleotide transport and metabolism [F] 0.71
COG0730Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 familyInorganic ion transport and metabolism [P] 0.71
COG1501Alpha-glucosidase/xylosidase, GH31 familyCarbohydrate transport and metabolism [G] 0.71
COG2154Pterin-4a-carbinolamine dehydrataseCoenzyme transport and metabolism [H] 0.71
COG3884Acyl-ACP thioesteraseLipid transport and metabolism [I] 0.71
COG4803Uncharacterized membrane proteinFunction unknown [S] 0.71

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms93.57 %
UnclassifiedrootN/A6.43 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2140918006|ConsensusfromContig60837All Organisms → cellular organisms → Bacteria805Open in IMG/M
2199352025|deepsgr__Contig_8368All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3929Open in IMG/M
3300000891|JGI10214J12806_10311857All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300002068|JGIcombinedJ21913_10024814All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2750Open in IMG/M
3300002071|JGIcombinedJ21915_10016855All Organisms → cellular organisms → Bacteria → Proteobacteria3300Open in IMG/M
3300002243|C687J29039_10208497All Organisms → cellular organisms → Bacteria686Open in IMG/M
3300002564|JGI24134J36421_10012867All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2718Open in IMG/M
3300004061|Ga0055487_10000673All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2892Open in IMG/M
3300004155|Ga0066600_10411100All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium CSP1-4643Open in IMG/M
3300004155|Ga0066600_10535425All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales576Open in IMG/M
3300004463|Ga0063356_100595150All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1493Open in IMG/M
3300004779|Ga0062380_10052518All Organisms → cellular organisms → Bacteria1382Open in IMG/M
3300005148|Ga0066819_1001047All Organisms → cellular organisms → Bacteria1249Open in IMG/M
3300005161|Ga0066807_1000971All Organisms → cellular organisms → Bacteria1993Open in IMG/M
3300005168|Ga0066809_10000340All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5753Open in IMG/M
3300005332|Ga0066388_107327736All Organisms → cellular organisms → Bacteria → Terrabacteria group554Open in IMG/M
3300005545|Ga0070695_100012207All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5153Open in IMG/M
3300005833|Ga0074472_11418320All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi539Open in IMG/M
3300005836|Ga0074470_10380406All Organisms → cellular organisms → Bacteria30678Open in IMG/M
3300005840|Ga0068870_10007089All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4981Open in IMG/M
3300006055|Ga0097691_1017793All Organisms → cellular organisms → Bacteria3179Open in IMG/M
3300006055|Ga0097691_1161583All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium592Open in IMG/M
3300006572|Ga0074051_10002641All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2557Open in IMG/M
3300006642|Ga0075521_10015465All Organisms → cellular organisms → Bacteria3023Open in IMG/M
3300006953|Ga0074063_13583118All Organisms → cellular organisms → Bacteria → Terrabacteria group516Open in IMG/M
3300007521|Ga0105044_10976416All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium CSP1-4650Open in IMG/M
3300009029|Ga0066793_10187543All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1205Open in IMG/M
3300009081|Ga0105098_10821549All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium503Open in IMG/M
3300009092|Ga0105250_10046908All Organisms → cellular organisms → Bacteria1732Open in IMG/M
3300009143|Ga0099792_11169264All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300009868|Ga0130016_10002846All Organisms → cellular organisms → Bacteria34419Open in IMG/M
3300011107|Ga0151490_1746685All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4995Open in IMG/M
3300011433|Ga0137443_1164967All Organisms → cellular organisms → Bacteria → Terrabacteria group659Open in IMG/M
3300012008|Ga0120174_1029426All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1663Open in IMG/M
3300012093|Ga0136632_10012057All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae3684Open in IMG/M
3300012186|Ga0136620_10213391All Organisms → cellular organisms → Bacteria853Open in IMG/M
3300012198|Ga0137364_11020153All Organisms → cellular organisms → Bacteria → Terrabacteria group625Open in IMG/M
3300012200|Ga0137382_10753196Not Available699Open in IMG/M
3300012211|Ga0137377_10170402All Organisms → cellular organisms → Bacteria2089Open in IMG/M
3300012356|Ga0137371_10182117All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_141646Open in IMG/M
3300012507|Ga0157342_1009470All Organisms → cellular organisms → Bacteria980Open in IMG/M
3300012989|Ga0164305_10974450All Organisms → cellular organisms → Bacteria → Terrabacteria group719Open in IMG/M
3300013772|Ga0120158_10293080All Organisms → cellular organisms → Bacteria → Terrabacteria group791Open in IMG/M
3300014313|Ga0075347_1144509All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300014325|Ga0163163_12309591All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300014498|Ga0182019_10175941All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium CSP1-41371Open in IMG/M
3300014502|Ga0182021_10064320All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi4264Open in IMG/M
3300014502|Ga0182021_10344334All Organisms → cellular organisms → Bacteria → Terrabacteria group1761Open in IMG/M
3300014839|Ga0182027_10318760Not Available1752Open in IMG/M
3300015200|Ga0173480_10619138All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium667Open in IMG/M
3300015360|Ga0163144_11221474All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium688Open in IMG/M
3300015371|Ga0132258_10345657All Organisms → cellular organisms → Bacteria3676Open in IMG/M
3300015371|Ga0132258_11689280All Organisms → cellular organisms → Bacteria1597Open in IMG/M
3300015372|Ga0132256_100584219All Organisms → cellular organisms → Bacteria1231Open in IMG/M
3300015372|Ga0132256_102642677All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium602Open in IMG/M
3300017789|Ga0136617_10492253All Organisms → cellular organisms → Bacteria976Open in IMG/M
3300018055|Ga0184616_10414905All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300018059|Ga0184615_10381334All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi776Open in IMG/M
3300019888|Ga0193751_1086234All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1241Open in IMG/M
3300020057|Ga0163151_10016592All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi6758Open in IMG/M
3300020186|Ga0163153_10274109All Organisms → cellular organisms → Bacteria792Open in IMG/M
3300020213|Ga0163152_10025317All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium4997Open in IMG/M
3300021082|Ga0210380_10071742All Organisms → cellular organisms → Bacteria1512Open in IMG/M
3300021413|Ga0193750_1004933All Organisms → cellular organisms → Bacteria3511Open in IMG/M
3300022204|Ga0224496_10036532All Organisms → cellular organisms → Bacteria2293Open in IMG/M
3300022309|Ga0224510_10545692All Organisms → cellular organisms → Bacteria → Terrabacteria group686Open in IMG/M
3300022915|Ga0247790_10108969All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium688Open in IMG/M
3300023311|Ga0256681_11668026All Organisms → cellular organisms → Bacteria2643Open in IMG/M
3300025155|Ga0209320_10298767All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia671Open in IMG/M
3300025319|Ga0209520_10694382All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300025324|Ga0209640_10556865All Organisms → cellular organisms → Bacteria929Open in IMG/M
3300025326|Ga0209342_11258697All Organisms → cellular organisms → Bacteria → Terrabacteria group540Open in IMG/M
3300025495|Ga0207932_1007932All Organisms → cellular organisms → Bacteria3309Open in IMG/M
3300025692|Ga0209744_1053075All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1500Open in IMG/M
3300025739|Ga0209745_1006982All Organisms → cellular organisms → Bacteria5575Open in IMG/M
3300025750|Ga0209747_1014552All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3337Open in IMG/M
3300025750|Ga0209747_1019899All Organisms → cellular organisms → Bacteria2760Open in IMG/M
3300025878|Ga0209584_10220073Not Available725Open in IMG/M
3300025888|Ga0209540_10507581All Organisms → cellular organisms → Bacteria632Open in IMG/M
3300025888|Ga0209540_10632865All Organisms → cellular organisms → Bacteria → Terrabacteria group534Open in IMG/M
3300025908|Ga0207643_10010493All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4990Open in IMG/M
3300025946|Ga0210126_102519All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1460Open in IMG/M
3300027045|Ga0207726_1054545Not Available528Open in IMG/M
3300027330|Ga0207777_1076825All Organisms → cellular organisms → Bacteria → Terrabacteria group583Open in IMG/M
3300027843|Ga0209798_10164295All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1108Open in IMG/M
3300027900|Ga0209253_10047592All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3563Open in IMG/M
3300027915|Ga0209069_10061079All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales1781Open in IMG/M
3300028380|Ga0268265_10062494All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2861Open in IMG/M
3300028743|Ga0302262_10009027All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi3623Open in IMG/M
3300028803|Ga0307281_10397902All Organisms → cellular organisms → Bacteria527Open in IMG/M
3300028809|Ga0247824_10742977All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300028819|Ga0307296_10318283All Organisms → cellular organisms → Bacteria849Open in IMG/M
3300028868|Ga0302163_10189925All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi565Open in IMG/M
3300028876|Ga0307286_10063935All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales1262Open in IMG/M
3300030010|Ga0302299_10363928All Organisms → cellular organisms → Bacteria743Open in IMG/M
3300030019|Ga0311348_10201184All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1483Open in IMG/M
3300030620|Ga0302046_10087311All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2538Open in IMG/M
3300030673|Ga0302287_10242413Not Available529Open in IMG/M
3300031100|Ga0308180_1024200All Organisms → cellular organisms → Bacteria605Open in IMG/M
3300031199|Ga0307495_10002601All Organisms → cellular organisms → Bacteria2033Open in IMG/M
3300031521|Ga0311364_10735041All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium992Open in IMG/M
3300031539|Ga0307380_10376890All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1287Open in IMG/M
3300031699|Ga0315535_1005379Not Available7268Open in IMG/M
3300031726|Ga0302321_101783379All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium713Open in IMG/M
3300031772|Ga0315288_10317086All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ornithinimicrobiaceae → Ornithinimicrobium → Ornithinimicrobium sediminis1620Open in IMG/M
3300031834|Ga0315290_11369012All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium CSP1-4580Open in IMG/M
3300031873|Ga0315297_10325739All Organisms → cellular organisms → Bacteria → Terrabacteria group1283Open in IMG/M
3300031943|Ga0310885_10011717All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3042Open in IMG/M
3300031944|Ga0310884_11065809All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300031949|Ga0214473_10603281All Organisms → cellular organisms → Bacteria1211Open in IMG/M
3300031949|Ga0214473_12137382All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300031965|Ga0326597_10279962All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1908Open in IMG/M
3300031997|Ga0315278_11605015All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium622Open in IMG/M
3300032003|Ga0310897_10002526All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4800Open in IMG/M
3300032053|Ga0315284_10023875All Organisms → cellular organisms → Bacteria8631Open in IMG/M
3300032053|Ga0315284_10298237All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2031Open in IMG/M
3300032143|Ga0315292_10005984All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium7473Open in IMG/M
3300032143|Ga0315292_10421896All Organisms → cellular organisms → Bacteria1121Open in IMG/M
3300032143|Ga0315292_10614532All Organisms → cellular organisms → Bacteria915Open in IMG/M
3300032143|Ga0315292_11224486All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300032163|Ga0315281_10801776All Organisms → cellular organisms → Bacteria971Open in IMG/M
3300032163|Ga0315281_11516320All Organisms → cellular organisms → Bacteria656Open in IMG/M
3300032164|Ga0315283_10641822Not Available1147Open in IMG/M
3300032164|Ga0315283_11414053All Organisms → cellular organisms → Bacteria716Open in IMG/M
3300032256|Ga0315271_11492444All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi582Open in IMG/M
3300032397|Ga0315287_10428325All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1569Open in IMG/M
3300032397|Ga0315287_12458788All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300032401|Ga0315275_11828624All Organisms → cellular organisms → Bacteria → Terrabacteria group644Open in IMG/M
3300032401|Ga0315275_11895645All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi630Open in IMG/M
3300032516|Ga0315273_10189046All Organisms → cellular organisms → Bacteria2819Open in IMG/M
3300032516|Ga0315273_10721018All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1308Open in IMG/M
3300032516|Ga0315273_12834937Not Available548Open in IMG/M
3300032516|Ga0315273_12943010All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300032893|Ga0335069_10860330All Organisms → cellular organisms → Bacteria → Terrabacteria group1016Open in IMG/M
3300032955|Ga0335076_10709911All Organisms → cellular organisms → Bacteria887Open in IMG/M
3300033820|Ga0334817_068434All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi687Open in IMG/M
3300034123|Ga0370479_0005160All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2771Open in IMG/M
3300034195|Ga0370501_0359400All Organisms → cellular organisms → Bacteria → Terrabacteria group530Open in IMG/M
3300034690|Ga0364923_0023742All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1388Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment17.14%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil10.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.43%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen5.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.57%
Freshwater Microbial MatEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat2.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.86%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen2.86%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand2.14%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.14%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil2.14%
Wetland SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment1.43%
FreshwaterEnvironmental → Aquatic → Freshwater → Pond → Sediment → Freshwater1.43%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.43%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment1.43%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)1.43%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.43%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost1.43%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil1.43%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.43%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.43%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.43%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.43%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.43%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.71%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.71%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.71%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater0.71%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater0.71%
Salt Marsh SedimentEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment0.71%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.71%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil0.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.71%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.71%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.71%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.71%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil0.71%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.71%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.71%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.71%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.71%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.71%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.71%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.71%
WastewaterEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater0.71%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2140918006Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1EnvironmentalOpen in IMG/M
2199352025Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOILEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300002068Barrow Graham LP Ref core NGADG0004-212 (Barrow Graham LP Ref core NGADG0004-212,NGADG0011-311, ASSEMBLY_DATE=20131010)EnvironmentalOpen in IMG/M
3300002071Barrow Graham LP Ref core NGADG0011-312 (Barrow Graham LP Ref core NGADG0011-312,NGADG0011-212, ASSEMBLY_DATE=20131010)EnvironmentalOpen in IMG/M
3300002243Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2EnvironmentalOpen in IMG/M
3300002564Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-312EnvironmentalOpen in IMG/M
3300004061Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqC_D2EnvironmentalOpen in IMG/M
3300004155Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004779Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3FreshEnvironmentalOpen in IMG/M
3300005148Soil and rhizosphere microbial communities from Laval, Canada - mgLMAEnvironmentalOpen in IMG/M
3300005161Soil and rhizosphere microbial communities from Laval, Canada - mgLPAEnvironmentalOpen in IMG/M
3300005168Soil and rhizosphere microbial communities from Laval, Canada - mgLPCEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005833Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBKEnvironmentalOpen in IMG/M
3300005836Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBBEnvironmentalOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300006055Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012EnvironmentalOpen in IMG/M
3300006572Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006642Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-DEnvironmentalOpen in IMG/M
3300006953Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300007521Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01EnvironmentalOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009081Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015EnvironmentalOpen in IMG/M
3300009092Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaGHost-AssociatedOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009868Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plantEngineeredOpen in IMG/M
3300011107Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300011433Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2EnvironmentalOpen in IMG/M
3300012008Permafrost microbial communities from Nunavut, Canada - A39_80cm_12MEnvironmentalOpen in IMG/M
3300012093Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)EnvironmentalOpen in IMG/M
3300012186Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06)EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012507Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610Host-AssociatedOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013772Permafrost microbial communities from Nunavut, Canada - A10_80_0.25MEnvironmentalOpen in IMG/M
3300014313Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D1EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014498Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaGEnvironmentalOpen in IMG/M
3300014502Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014839Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015200Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)EnvironmentalOpen in IMG/M
3300015360Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300017789Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)EnvironmentalOpen in IMG/M
3300018055Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coexEnvironmentalOpen in IMG/M
3300018059Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coexEnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300020057Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.IB-2EnvironmentalOpen in IMG/M
3300020186Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP6.IB-1EnvironmentalOpen in IMG/M
3300020213Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP8.IB-2EnvironmentalOpen in IMG/M
3300021082Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redoEnvironmentalOpen in IMG/M
3300021413Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1EnvironmentalOpen in IMG/M
3300022204Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1EnvironmentalOpen in IMG/M
3300022309Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_4_1EnvironmentalOpen in IMG/M
3300022915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4EnvironmentalOpen in IMG/M
3300023311Combined Assembly of Gp0281739, Gp0281740, Gp0281741EnvironmentalOpen in IMG/M
3300025155Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 4EnvironmentalOpen in IMG/M
3300025319Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1EnvironmentalOpen in IMG/M
3300025324Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)EnvironmentalOpen in IMG/M
3300025326Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)EnvironmentalOpen in IMG/M
3300025495Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025692Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-311 (SPAdes)EnvironmentalOpen in IMG/M
3300025739Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-312 (SPAdes)EnvironmentalOpen in IMG/M
3300025750Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-311 (SPAdes)EnvironmentalOpen in IMG/M
3300025878Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)EnvironmentalOpen in IMG/M
3300025888Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes)EnvironmentalOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025946Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300027045Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 40 (SPAdes)EnvironmentalOpen in IMG/M
3300027330Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)EnvironmentalOpen in IMG/M
3300027843Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300027900Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028743Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_4EnvironmentalOpen in IMG/M
3300028803Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120EnvironmentalOpen in IMG/M
3300028809Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028868Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_3EnvironmentalOpen in IMG/M
3300028876Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140EnvironmentalOpen in IMG/M
3300030010Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_4EnvironmentalOpen in IMG/M
3300030019II_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300030620Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111EnvironmentalOpen in IMG/M
3300030673Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_4EnvironmentalOpen in IMG/M
3300031100Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_151 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031199Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_SEnvironmentalOpen in IMG/M
3300031521III_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031699Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-20EnvironmentalOpen in IMG/M
3300031726Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1EnvironmentalOpen in IMG/M
3300031772Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20EnvironmentalOpen in IMG/M
3300031834Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0EnvironmentalOpen in IMG/M
3300031873Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300031949Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197EnvironmentalOpen in IMG/M
3300031965Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185EnvironmentalOpen in IMG/M
3300031997Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0EnvironmentalOpen in IMG/M
3300032003Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1EnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300032143Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0EnvironmentalOpen in IMG/M
3300032163Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0EnvironmentalOpen in IMG/M
3300032164Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0EnvironmentalOpen in IMG/M
3300032256Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_topEnvironmentalOpen in IMG/M
3300032397Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0EnvironmentalOpen in IMG/M
3300032401Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0EnvironmentalOpen in IMG/M
3300032516Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M
3300033820Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-DEnvironmentalOpen in IMG/M
3300034123Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_01D_15EnvironmentalOpen in IMG/M
3300034195Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17EnvironmentalOpen in IMG/M
3300034690Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
P1_C_017285302140918006SoilTPAAYRHGLALALPEAVMARPTGVGRAITTYTIPIEGRDEWLAAARRLA
deepsgr_012153002199352025SoilVRLTPSAYAHGLALALPTEVALARPTGVGRAISTYTIPIEGRDEWLAAARRLA
JGI10214J12806_1031185733300000891SoilGFALALPDKVAVARPTGVGRAISTYTIPIEGRDEWLAAARRLA*
JGIcombinedJ21913_1002481413300002068Arctic Peat SoilAHSFSARLTPPAYTHGLALALPEEVVLARPTGVGRAISTCTIPIEGRDEWLAAARRLA*
JGIcombinedJ21915_1001685543300002071Arctic Peat SoilVVAGRTCASVRLTPAAYAHGLALALPEVVMARPTGVGYALTAYRMPIEGRDEWLAAVERLA*
C687J29039_1020849723300002243SoilDGVRLTRAAYAHGLALALPEKVAMARPTGVGRAITAYDMPIEGRDEWLAAARRLA*
JGI24134J36421_1001286713300002564Arctic Peat SoilVAYAHGLALALPEKAVMARPTGVGRAISTCTIPIEGRDEWLAAARRLA*
Ga0055487_1000067343300004061Natural And Restored WetlandsAAYAHGLALALPEKVEMARPTGVGRAPATYTIPIEARDEWLATAGLLR*
Ga0066600_1041110023300004155FreshwaterYAHGLALALPEKVAMARPTGVGRALATYEIPIEGRDEWLAAARRLA*
Ga0066600_1053542533300004155FreshwaterYAHGLALALPEKVELARPTGVGRAITTYTLPIEGRDEWLAAARRLA*
Ga0063356_10059515013300004463Arabidopsis Thaliana RhizosphereGAPCTKSALPEKVAVARPTGVGRAIATYEIPIEGRDEWLAAARRLA*
Ga0062380_1005251833300004779Wetland SedimentLALALPERVVMARPEGVGRAIATYTLPIEGRDEWLAAARRLA*
Ga0066819_100104733300005148SoilFVTAGLTPAAYKDGMALALPQDVMARPTGVGRAISTYTIPIEGRDEWLAAARRLA*
Ga0066807_100097113300005161SoilALALPEKVAVARPTGVGRAISTYTIPIEGRDEWLAAARRLA*
Ga0066809_1000034013300005168SoilQAAYAHGLALALPEKVEMARPTGVGRAISTYTIPIEGRDEWLAAARRLA*
Ga0066388_10732773613300005332Tropical Forest SoilLSIRPTVPRYANGLAAALPAKVAVARPTGLGRGTTTYTIPILGRDEWLAAARAGEHRA*
Ga0070695_10001220713300005545Corn, Switchgrass And Miscanthus RhizosphereRGPHVTPAAYQHGMALALAQVAVARPTGVGRAISTYTIPIEGRDEWLAAARRLA*
Ga0074472_1141832023300005833Sediment (Intertidal)QAAYAHGLALALPEKVELARPTGVGRADAINIRIPIDGAEEAWLTGESA*
Ga0074470_10380406173300005836Sediment (Intertidal)MDLALAVPEAVMARPTGVGRALATYEIPIEGRDEWLAAARRLA*
Ga0068870_1000708983300005840Miscanthus RhizosphereRLTPSAYAHGLALVLPEKVAVARPTGVGRAISTYTIPIEGRDEWLAAARRLA*
Ga0097691_101779383300006055Arctic Peat SoilCIRFAFVLPEQAAMARPTGVGRAIPTYYNMPIEGRDEWLAAARRLA*
Ga0097691_116158313300006055Arctic Peat SoilRFVGLRLTPAAYRHGLALALPDAVMARPTGFGHALATYNIPIEGRADWEAAAREGSA*
Ga0074051_1000264153300006572SoilTIPPEPRRASRPLALALPEHVRPAQEWVLARPTGVGRAISTYTIPIEGRDEWLAAARRLA
Ga0075521_1001546523300006642Arctic Peat SoilVRCFVGLHLTPAAYRQGLALPAAVMARPKGVGRALATYVIPIEGRDEWLAAARRLA*
Ga0074063_1358311813300006953SoilVAGPEFVINRLTPAAYQNGLALALPQAARARPTGVARAISTYTIPIEGRDEWL
Ga0105044_1097641633300007521FreshwaterVRLTPSAYAHGLALVLPQKVDMARPTGVGRAISTYEIPIEGRDEWLAAARRLA*
Ga0066793_1018754333300009029Prmafrost SoilLSGLRLTPEAYSLGLALALPERVQPAKEWVLARPTGVGRAITTYSMPIEGRDEWLAAARRLA*
Ga0105098_1082154923300009081Freshwater SedimentAYAHGLALALPEKVAMARPTGVGRALATYEIPIEGRDEWLAAARLEA*
Ga0105250_1004690843300009092Switchgrass RhizosphereMTASWLREARRARESSPSPRLTPEGAAHELALALPEVVMARPTGVGRAISTYTIPIEGRDEWLAAARRLA*
Ga0099792_1116926413300009143Vadose Zone SoilRRTQAAYAHGLALALALPEKVEMARPTGVGRAITTYTIPIEGRDEWLAAAGLRA*
Ga0130016_10002846383300009868WastewaterVPVISAADALGFALALPEEAAVARTTGVGRASATCEILIEGQDERLAAARRLA*
Ga0151490_174668513300011107SoilMRGFALALPDRVGMARPTGVGRAISTYTIPIEGRDEWLAAARRLA*
Ga0137443_116496713300011433SoilMALALPEAVMARPTGVGRAISTYTIPIEGRDEWLAAARRLA*
Ga0120174_102942613300012008PermafrostLALALPEKVVMARPTGVGRARTHSRFKLIPIEGAGEWLRMSRESA*
Ga0136632_1001205713300012093Polar Desert SandLYRHRLDLAVLDAVLARPTLARPTGVGRALATYEVPIEGRDEWLAAARRLA*
Ga0136620_1021339113300012186Polar Desert SandIAAHVAAPYRHRLALALPGAAMERPTGVGRAITAYDMPIEGRDEWLAAARRQA*
Ga0137364_1102015313300012198Vadose Zone SoilVSVRLTPSAYAHGFALALPEKVAVARPTGVGREITTYRIPIEGREEWEAAARARSA*
Ga0137382_1075319623300012200Vadose Zone SoilMLSGFALADHGEMARPTGVGRALATCEIPIEGRDEWLAAAGLT
Ga0137377_1017040233300012211Vadose Zone SoilMLSAFALADEGEMARPTGVGRAISTYTIPIEGRDEWLAAARRQA*
Ga0137371_1018211733300012356Vadose Zone SoilMLSGFALADHGEMARPTGVGRGITTYTIPIEGRDEWLAAAGLRA*
Ga0157342_100947033300012507Arabidopsis RhizosphereGLELALPEKAVMARPTGVGRAISTYTIPIEVRDEWLAAARRLA*
Ga0164305_1097445023300012989SoilMLSGFALADQGEIARPTGVGRAISTYTIPIEGRDEWVAAAGLRA*
Ga0120158_1029308023300013772PermafrostIMSIRLTPSAYAHGLALALPDKVAMARPTGVRRGHAHSGYGQILIEGADEWRSAARWSA*
Ga0075347_114450913300014313Natural And Restored WetlandsAYAHGLALALPEKVAMARPTGVGRAMATYEIPIEGRDEWLAAARRLA*
Ga0163163_1230959123300014325Switchgrass RhizosphereVRLTASADAHGPALALHEKAGLARPAGVRRAISTYTIPIEGRDEWLA
Ga0182019_1017594133300014498FenEGPRFVGLRLTPAAYRHGLALALPEPVMARPTGVGRAIATLDLPIEGRDEWLAAARRLA*
Ga0182021_1006432033300014502FenMALALPEEHMVLARPTGVGHALTTYRIPIEGRDEWVAASRVRSA*
Ga0182021_1034433443300014502FenVSARLTPAAYAHGLALAMPEKAAMARPTGVGRAIPTYDMPIEGR
Ga0182027_1031876013300014839FenLALALREIVAKARPTGVGHALATCRIPIKGRDEWVAAAEAKSA*
Ga0173480_1061913823300015200SoilFALALPDRDEMARPTGGGRALATSAIPIEGRDEWLTAARRLA*
Ga0163144_1122147413300015360Freshwater Microbial MatLALALPQKVELARPTGVGRAISTYTIPIEGRDEWLAAAGLRA*
Ga0132258_1034565713300015371Arabidopsis RhizosphereVACCIRLTQAAYAHGSALALPEKVELARPPGFGRALAYEIPIEGRDEWLAAASRPA*
Ga0132258_1168928013300015371Arabidopsis RhizosphereMALARAEEVEMARPTGVGRAAATYTIPIEGRHEWLAAARRET*
Ga0132256_10058421913300015372Arabidopsis RhizosphereLELALPEKAVMARPTGVGRAISTYTIPIEGRDEWLAAARRL
Ga0132256_10264267713300015372Arabidopsis RhizosphereVACCIRLTQAAYAHGSALALPEKVELARPPGFGRALAYEIPIEGRDEWLAAASLPA*
Ga0136617_1049225323300017789Polar Desert SandAAAYAHGLALALPEKVAMARPTGVGRAIATYSMPIEGRDEWIAAARRQA
Ga0184616_1041490513300018055Groundwater SedimentNACDRARLTPAAYAHGLALALPEKVVMARPTGVGQAITTYDMPTEGRDEWIAAAARHLA
Ga0184615_1038133413300018059Groundwater SedimentGLALALPEKVVMARPTGVGRALTANRMPIEGRDEWVDAVERLA
Ga0193751_108623413300019888SoilMALALPEAVVVRPTGVGRAISTYTIPIEGRDEWVAAARRLA
Ga0163151_1001659293300020057Freshwater Microbial MatMAASSHHDAHRASALALPRKVEMARPTGVGRAISTYTIPIEGRDEWLAAARRLA
Ga0163153_1027410913300020186Freshwater Microbial MatHDAHRASALPQEVEMARPTGVRRAISTYTIPIEGRDEWLAAARRLA
Ga0163152_1002531783300020213Freshwater Microbial MatVMAASSHHDAHRASALALPRKVEMARPTGVGRAISTYTIPIEGRDEWLAAARRLA
Ga0210380_1007174233300021082Groundwater SedimentVGLRLTPAAYRHGLAVALPTKVALARPTGVGRAISTYTIPIEGRDEWLAAARRQA
Ga0193750_100493333300021413SoilMALALPEAVVVRPTGVGRAISTYTIPIEGRDEWGAAARRLA
Ga0224496_1003653213300022204SedimentTIVSIRLTPAAYAHGLAVALPTKVALARPTGVGRALATYEIPIEGRDEWLAAARRLA
Ga0224510_1054569223300022309SedimentVSIRLTPAAYAHGLAVALPTKVALARPTGVGRALATYEIPIEGRDEWL
Ga0247790_1010896923300022915SoilDHGFALALPDRDEMARPTGGGRALATYAIPIEGRDEWLTAARRLA
Ga0256681_1166802643300023311FreshwaterVSARLTPAAYAHGLALAMPEKVAMARPTGVGRAITTYTLAIEGRDEWIAAVERLA
Ga0209320_1029876713300025155SoilLALALPEKVAMARPTGVGRAITAYDMPIEGRDEWLAAARRL
Ga0209520_1069438223300025319SoilLALALPEKVAMARPTGVGRAITAYDMPIEGRDEWLAAARRLA
Ga0209640_1055686533300025324SoilRSVRLTPAAYAHGLGLALPEKVAMARPTGVGRAITAYDMPIEGRDEWLAAARRLA
Ga0209342_1125869713300025326SoilMEGPRFVGLRLTPEAYRHGLAPALPDKVALARPTGVGRALTAYDMPIEGRDEWIAAARRL
Ga0207932_100793213300025495Arctic Peat SoilHRHGLALALPDAVMARPTGVGRALTAYRMPIEGRDEWIAAVERLA
Ga0209744_105307513300025692Arctic Peat SoilAHGLALAMPEKVAMARPTGVGRGITTYTIPIDGRDEWLAAARRLA
Ga0209745_100698273300025739Arctic Peat SoilVFARLSPAAYAHGLALAVPEKAVMARPTGVGHALTAYRMPIEGRDEWIAAVERLA
Ga0209747_101455273300025750Arctic Peat SoilGAHSFSARLTPPAYTHGLALALPEEVVLARPTGVGRAISTCTIPIEGRDEWLAAARRLA
Ga0209747_101989933300025750Arctic Peat SoilMPPPCGTRSAHVSVRLTAAAYAHGLALAMPEKVAMARPTGVGRGITTYTIPIDGRDEWLAAARRLA
Ga0209584_1022007323300025878Arctic Peat SoilVRCFVGLHLTPAAYRQGLALPAAVMARPKGVGRALATYVIPIEGRDEWLAAARRLA
Ga0209540_1050758133300025888Arctic Peat SoilRLTPSADAHGLALVLPQVDMARSTGVGRAITTYDMLIEGRDEWLAAAARHFA
Ga0209540_1063286513300025888Arctic Peat SoilPAAYRHGLALALPEAVMARPTGVGRALATYRIPIEAHDEWEAAARVRSA
Ga0207643_1001049383300025908Miscanthus RhizosphereWKIVFVRLTPSAYAHGLALVLPEKVAVARPTGVGRAISTYTIPIEGRDEWLAAARRLA
Ga0210126_10251913300025946Natural And Restored WetlandsLALVLPEKVAMARPTGVGRAMATYEIPIEGRDEWLAAARRLA
Ga0207726_105454523300027045Tropical Forest SoilVGVRLTEAAYAHGFALALPEKVAIARATGVGHALATCEIPIEGRDEWRAAAGLASG
Ga0207777_107682523300027330Tropical Forest SoilVGVRLTEAAYAHGFALALPEKVAIARATGVGHALATHTIPIEGRDEWFAAA
Ga0209798_1016429523300027843Wetland SedimentLALALPERVVMARPEGVGRAIATYTLPIEGRDEWLAAARRLA
Ga0209253_1004759263300027900Freshwater Lake SedimentVGVQLTAAAYALGLALALPEEAAMARPTGVGRAKAACDIPIEGREEWLAAARRLA
Ga0209069_1006107943300027915WatershedsIYERIVIEGPRFVGLRLTPAAYRHGMALALPEAVMARPTGVGHAITTYDMLIEGRDEWLAAARRLA
Ga0268265_1006249453300028380Switchgrass RhizosphereRLTPSAYARGLALALPTKVALARPTGVGRAISTYTIPIEGRDEWLAAARRLA
Ga0302262_1000902743300028743FenMSWHGLPETVDVVLARPTGVGRAIAACEIPIEGRDEWLAAAGRSA
Ga0307281_1039790223300028803SoilIGDGAWPRDVAPQANIEGPRLVGLRLTPAAYRHGLAVALPTKVALARPTGVGRAISTYTIPIEGRDEWLAAARRQA
Ga0247824_1074297733300028809SoilGLALALPEKVELARPTGVGRAISTYTIPIEGRDEWLAAARRLA
Ga0307296_1031828313300028819SoilAHGLTLALPEQVAMARPTGVGRAITTYTLPIEGRDERLAAAGLRA
Ga0302163_1018992533300028868FenSVRLTPSAYAHGLALALPTKVAMARPTGVGRALATYDIPIEGRDEWLAAARRLG
Ga0307286_1006393533300028876SoilAAYAHGLALALPEKVEMARPTGVGRAISTYTIPIEGRDEWLAAARRLA
Ga0302299_1036392833300030010FenVRLTASAYAHGLALALPDKVAMARPTGVGRAIATCDMPIEGRDEWIAAVERLA
Ga0311348_1020118413300030019FenTPSAYAHGLGVAVPGKVALARPTGVGPAIAACEIPIEGREEWVAAARRLA
Ga0302046_1008731113300030620SoilVSIRLTPSAYAHGLALALPDKVAMARPTGVGRALTAYDMPIEGRDEWLA
Ga0302287_1024241323300030673FenMAPEACAHGFAVALPLAGAMARPTGIELTRTHSGKSIPIEGADESEVATMSSA
Ga0308180_102420013300031100SoilPWLLARPTGVGRAISTYTIPIEGRDEWLAAAGLRSPMLSR
Ga0307495_1000260143300031199SoilGFALALPEKVAVARPTGAGRAISTYTIPIEGRDEWLAAARRLA
Ga0311364_1073504113300031521FenPRFVGLRLTPAAYRHGMALAPPEAAMARPTGLNRADDILIHLPIEGAAAWDATAQHGA
Ga0307380_1037689023300031539SoilVAGARIVRVRLTSAADAHGLALALPEKVALATYEIPIEGRDEWVAAARRLA
Ga0315535_1005379123300031699Salt Marsh SedimentLPEKVELARPTVARPTGVGRALATYEIPIEGRDEWLAAARRLA
Ga0302321_10178337923300031726FenMAPEACAHGFAVALPLAGAMARPTGVGRALATYEIPIEGRDEWLVAAGLGA
Ga0315288_1031708613300031772SedimentVGLRLTPAAYRHGLALALPDAVMARPTGVGRAIATYDTPIEGRDEWVAAAKRLA
Ga0315290_1136901223300031834SedimentYAHGLALALPEKAEMARPTGDGRALATYEIPIEGRDEWLAAARRLA
Ga0315297_1032573913300031873SedimentAAAYAHGLALALPEKVEMARPTGVGRALATYTLPIEGRDEWLAAARRLA
Ga0310885_1001171713300031943SoilARSRKAAIAHGWAPALPETVEMARPTGVGRAISTYTIPIEGRDEWLAAARRLA
Ga0310884_1106580923300031944SoilRIVSARLTPSANEHGLALALPEKVEMARPTGVGRAISTYTIPIEGRDEWLAAARRLA
Ga0214473_1060328113300031949SoilFVGLRLTPAAYRHGLALALPEAVMARPTGVGRAKTAYDVPIEGRDEWLAAARRLA
Ga0214473_1213738213300031949SoilPEFVGARLTPEAYSLGLAIALPERVKPAQEWVLARPTGVGRAITTYSMPIEGRDEWLAAARRLA
Ga0326597_1027996223300031965SoilMSASSSRARRCEVRLTPTAYAHGLALAVPERFAMARPMAVGRAMTAYRMRIEGRDEWIAAIGRVA
Ga0315278_1160501533300031997SedimentTQAAYAHGLALALPEKVEMARPTGVGRALATYEILIEGRDEWMAAARRLA
Ga0310897_1000252673300032003SoilGKSVAWPALALPQKIALARPTGVGRAISTYTIPIEGRDEWLAAARRLA
Ga0315284_10023875133300032053SedimentLDLVVAAGCAHGLALALPERVVMARPEGVGRAIATYTLPIEGRDEWLAAARRLA
Ga0315284_1029823733300032053SedimentGLAVALPDKVAVAHPTGVGRALATYVLAIEGRDEWLAAARRLA
Ga0315292_1000598483300032143SedimentAHGLALALPEKVEMARPTGVGRAITTYSIPIEGRDEWVAAARVRSA
Ga0315292_1042189613300032143SedimentAYAHGLALALPEKVAMARPTGVGRAITTYDTPIEGRDEWVAAARRLA
Ga0315292_1061453213300032143SedimentFVAAGCAHGLALALPERVVMARPEGVGRALATFEIPIEGRDEWLAAARRLA
Ga0315292_1122448613300032143SedimentGLALALPEKVAMARPTGVGRAISTYTIPIEGRDEWLAAAGLRA
Ga0315281_1080177643300032163SedimentRLTAAAYAHGLALALPEKVEMARPTGVGSALTAYGMPIEGRGEWVAAVARLLA
Ga0315281_1151632033300032163SedimentHGLALALPEKVVMARPTGVGRAITTYRFPIEGRDQWLAAAGVRSA
Ga0315283_1064182233300032164SedimentLTPSAYAHGFALALPEEVVLARPTGVGRALATYTLPIEGRDEWLAAARRLA
Ga0315283_1109466313300032164SedimentVSIRLTPSAHAHGLALALPEKVEMARPTGFGRALATYEIPIEG
Ga0315283_1141405333300032164SedimentRSFGPLAPNGLALALPDDAAMARPTGVGRALATYDTLIEGRDEWLAAARRLA
Ga0315271_1149244423300032256SedimentQRESVLALPEAAMARPTGVGRALATYEISIEGRDEWLAAARRLA
Ga0315287_1042832533300032397SedimentRLTAAAYAHGLALALPEKAVLARPTGVGHALTAYEIPIEGRDEWLAAARRRA
Ga0315287_1245878833300032397SedimentGVALALPEKVAVARPTGVGSALTAYGMPIEGRDEWLAAVARLLA
Ga0315275_1182862423300032401SedimentVRLTPSAYAHGFALALPEEVVLARPTGVGRALATYTLPIEGRDEWLAAARRLA
Ga0315275_1189564513300032401SedimentTAAAYAHGLALALPDKVGMARPEGVGRGIATYDVPIEGRDEWLAAARRLA
Ga0315273_1018904613300032516SedimentAAYAHGLALALPEKAEVARPTGVGRAITTYDTPIEGRDEWVAAARRLA
Ga0315273_1072101823300032516SedimentALPEKVAMARPTGVGRAITTYSIPIEGRDEWVAAARVRSA
Ga0315273_1283493723300032516SedimentEIVGIRLTAAAYAHGLALALPEKVAMARPTGDGRASAQRRRSITRAHIEIEGRAEWLAILRETA
Ga0315273_1294301023300032516SedimentHRPRPSQWLTLRVVGVRLSAAAYAHGLALALPEKVVMARPTGVRRGITTYRIPIEGKDEWLAPALIRSA
Ga0335069_1086033013300032893SoilVSVRLTPSAFAHGLAVALPTKVAMARPTGVGHALATYEIPIEGRDEWLAAAGLTA
Ga0335076_1070991113300032955SoilGLALALPEKVVLARPTGVAHALTAYDMPIEGRDEWLAAARRLA
Ga0334817_068434_487_6543300033820SoilVSARLTPAAYAHGLALAMPEKAAMARPTGVGRAIPTYDMPIEGRDEWLAAARRLA
Ga0370479_0005160_576_7373300034123Untreated Peat SoilMRLTPAAYAHGLALALPTKVAMARPTGVGRALATYEIPIEGRDEWLAAARRLA
Ga0370501_0359400_401_5293300034195Untreated Peat SoilLALALLEKVEMARPTGVGRALATYEIRIEGREEWLAAARRLA
Ga0364923_0023742_1_1293300034690SedimentSAHGLALALVIARPTGVGRAISTYTIPIEGRDEWLVAAGLGA

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.