NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F053991

Metagenome / Metatranscriptome Family F053991

Go to section:
Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F053991
Family Type Metagenome / Metatranscriptome
Number of Sequences 140
Average Sequence Length 49 residues
Representative Sequence MADVNANIGVNIDTSAALAQLKALQRQISQFHTSIAKSSETAALAQRDLQKN
Number of Associated Samples 113
Number of Associated Scaffolds 140

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 1.43 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 108
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (99.286 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(28.571 % of family members)
Environment Ontology (ENVO) Unclassified
(54.286 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(60.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 47.50%    β-sheet: 0.00%    Coil/Unstructured: 52.50%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A99.29 %
All OrganismsrootAll Organisms0.71 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300027782|Ga0209500_10013083All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5044Open in IMG/M
3300034356|Ga0335048_0047684Not Available2789Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater28.57%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater15.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake9.29%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater8.57%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater5.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake5.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake4.29%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater4.29%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton3.57%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous3.57%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment2.14%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.43%
Marine PlanktonEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton1.43%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.43%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface1.43%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment0.71%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment0.71%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.71%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater0.71%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.71%
Meromictic PondEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond0.71%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment0.71%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000756Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011EnvironmentalOpen in IMG/M
3300001838Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM33, ROCA_DNA217_0.2um_bLM_C_2aEnvironmentalOpen in IMG/M
3300001844Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM35, ROCA_DNA220_0.2um_bLM_C_3aEnvironmentalOpen in IMG/M
3300002276Freshwater microbial communities from Lake Mendota, WI - 09JUN2009 deep hole epilimnion nsEnvironmentalOpen in IMG/M
3300002447Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion MetagenomeEnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300003404Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMDEnvironmentalOpen in IMG/M
3300003412Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DDEnvironmentalOpen in IMG/M
3300004096Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 2)EnvironmentalOpen in IMG/M
3300005517Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)EnvironmentalOpen in IMG/M
3300005528Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaGEnvironmentalOpen in IMG/M
3300006639Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11EnvironmentalOpen in IMG/M
3300006875Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300007165Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16EnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300008110Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NAEnvironmentalOpen in IMG/M
3300008113Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NAEnvironmentalOpen in IMG/M
3300008117Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008120Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NAEnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300009158Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaGEnvironmentalOpen in IMG/M
3300009165Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015EnvironmentalOpen in IMG/M
3300009170Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015EnvironmentalOpen in IMG/M
3300009180Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaGEnvironmentalOpen in IMG/M
3300009185Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaGEnvironmentalOpen in IMG/M
3300009470Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, surface; DNA IDBA-UDEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300011010Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface IceEnvironmentalOpen in IMG/M
3300011184Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - Floc-Cal metaGEnvironmentalOpen in IMG/M
3300012711Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES133 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012712Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES121 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012726Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES115 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012733Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES131 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012970Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013006Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaGEnvironmentalOpen in IMG/M
3300013087Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30LEnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300013137 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_11.1mEnvironmentalOpen in IMG/M
3300013295northern Canada Lakes metatranscriptome co-assemblyEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017766Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.DEnvironmentalOpen in IMG/M
3300020074Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200mEnvironmentalOpen in IMG/M
3300020084Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200mEnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020197Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65mEnvironmentalOpen in IMG/M
3300020200Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015020 Mahale Deep Cast 50mEnvironmentalOpen in IMG/M
3300020487Freshwater microbial communities from Lake Mendota, WI - 13AUG2008 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020498Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020530Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020554Freshwater microbial communities from Lake Mendota, WI - 17AUG2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020578Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015038 Kigoma Deep Cast 35mEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300024481Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_0h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024543Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_0h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024548Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024555Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024556Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024559Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024850Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024857Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024867Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025732Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026457Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepB_8hEnvironmentalOpen in IMG/M
3300026473Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8dEnvironmentalOpen in IMG/M
3300026478Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepA_8hEnvironmentalOpen in IMG/M
3300026571Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300027151Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepA_0hEnvironmentalOpen in IMG/M
3300027494Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepB_8dEnvironmentalOpen in IMG/M
3300027642Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027720Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)EnvironmentalOpen in IMG/M
3300027732Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027734Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027736Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027746Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027772Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027782Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027798Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027836Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028025Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FCEnvironmentalOpen in IMG/M
3300028112Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028245Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028286Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028530Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300033816Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005EnvironmentalOpen in IMG/M
3300033979Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003EnvironmentalOpen in IMG/M
3300033981Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011EnvironmentalOpen in IMG/M
3300033992Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035EnvironmentalOpen in IMG/M
3300033996Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004EnvironmentalOpen in IMG/M
3300034019Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049EnvironmentalOpen in IMG/M
3300034020Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055EnvironmentalOpen in IMG/M
3300034022Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058EnvironmentalOpen in IMG/M
3300034023Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034068Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031EnvironmentalOpen in IMG/M
3300034082Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088EnvironmentalOpen in IMG/M
3300034093Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072EnvironmentalOpen in IMG/M
3300034101Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M
3300034118Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165EnvironmentalOpen in IMG/M
3300034200Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190EnvironmentalOpen in IMG/M
3300034272Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156EnvironmentalOpen in IMG/M
3300034283Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061EnvironmentalOpen in IMG/M
3300034284Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075EnvironmentalOpen in IMG/M
3300034356Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI12421J11937_1013805433300000756Freshwater And SedimentMADVNANIGINIDSSNALAQLKALQRQISQFHTSIARSSEAAALAQ
RCM33_109027923300001838Marine PlanktonMSDVNANIKVSIDSSQALSELKSLQRQISLFHTNIAKSSAQAALAQKTLQT
RCM35_117530813300001844Marine PlanktonMSDVNANIKVSIDSSQALSELKSLQRQISLFHTNIAKSSAQAALAQKTLQTDLLNAVN
B570J29586_101887523300002276FreshwaterMADVNANIGVNIDTSAALAQLKSLQRQISQFHTSISRSSESAAIAQKSLQKNLLNS
JGI24768J34885_1025714113300002447Freshwater And SedimentMSDVNANISVNIDTSAALGELKNLQRQISQFHNQIAKSSASAAIA
B570J40625_10079159313300002835FreshwaterVADVNANIGVNIDTSNALSQLKALQRQISQFHTSISKSSEAAALAQRDLQR
B570J40625_10082242313300002835FreshwaterMADVNANIGVNIDASDAISQLKSLQRQLSQFHTSIAKSSEAA
JGI25920J50251_1012606713300003404Freshwater LakeMADVNANIGINIDSSNALAQLKALQRQISQFHTSIARSSEAAALAQKG
JGI25912J50252_1012511023300003412Freshwater LakeMADVNANIGINIDSSNALAQLKALQRQISQFHTSIARSSEAAALAQKGLQKNLLNSI
Ga0066177_1044689313300004096Freshwater LakeLADVNAEINVNIDTSGALAQLKSLQREISRFHTSVAKSSDQAALAQRDLQKNFI
Ga0070374_1020594933300005517Freshwater LakeMADVNANIDINIDSSNALSQLKALQRQISQFHTSIAKSSEAAALAQKGLQ
Ga0070374_1024409433300005517Freshwater LakeMADVNANIGINIDSSNALAQLKALQRQISQFHTSIARSSEAAALAQKGLQKNLLN
Ga0068872_1016331913300005528Freshwater LakeVADVNANIGVNIDTSNALAQLKALQRQISQFHSSIAKSSETAALAQRDLQRNFLNGVNAIGAF
Ga0079301_120663913300006639Deep SubsurfaceMADVNANIDINIDSSNALAQLKSLQRQISQFHTSIARSSEAAALAQRGLQKNLLNSIN
Ga0075473_1001328613300006875AqueousMSDVNANISVNIDTSAALAELKSLQRQISLFHASIAKSSA
Ga0079302_112340713300007165Deep SubsurfaceMADVNANIGVHIDTSAALAELKNLQRQLATFHQSIAKGSAASALA
Ga0099848_123445613300007541AqueousMADVNANIGVNIDTSAALAQLKALQRQISQFHSSIARSS
Ga0114343_104956213300008110Freshwater, PlanktonMADVNANIGVNIDTSNALAQIKNLQRQLSEFYTSISRSS
Ga0114343_123286513300008110Freshwater, PlanktonMADVNANIGVNIDTSLALAQLKSLQRQISQFHTSIARSSETAALAQKSLQKNFLNSVNA
Ga0114346_119491313300008113Freshwater, PlanktonMADVNANINVNVDTSNALAQIKSLQRQLSEFYTSISRSSQTAALAQRDLQTN
Ga0114351_122161433300008117Freshwater, PlanktonMSDANANISISIDTSAALSQLKALQRQISLFHTSVAKSTTTAARAQQDLQ
Ga0114355_121471813300008120Freshwater, PlanktonVADVNANIGVNIDTSNALSQLKALQRQISQFHTSIAKSSE
Ga0114880_104395643300008450Freshwater LakeMADVNANIGVNIDTTQALAQLKSLQRQISQFHTSIAKSSETAALAQRDLQRTFIIS
Ga0114977_1050561633300009158Freshwater LakeMSDVNANIGVQIDTSSALTELKNLQRQLANFHASIAKTSAAASAAQKG
Ga0105102_1075182713300009165Freshwater SedimentMADVNANIGVNIDTSAALAQLKALQRQISQFHTSIAKSSESAA
Ga0105096_1044524413300009170Freshwater SedimentMADVNANIGVNIDTSLALAQLKSLQRQISQFHTSIARSSETAALAQKS
Ga0114979_1069033223300009180Freshwater LakeVADVNANIDINIDSSNAISQLKSLQRQISQFHTSIAKS
Ga0114971_1012449043300009185Freshwater LakeMADVNANIGVHIDTSAALAELKNLQRQLATFHSSVAKNSAAAAAAQ
Ga0126447_105074733300009470Meromictic PondMADVNANIGVNIDTSAALAQLKALQRQISQFHTSIAKSSEAAGLA
Ga0129333_1110821233300010354Freshwater To Marine Saline GradientMADVNANIDINIDSSNALAQLKSLQRQISQFHTSIAKSSEAAALAQRGLQK
Ga0139557_104113913300011010FreshwaterMADVNANIGVNIDTSAALAQLKALQRQISQFHSSIARSSESAALAQRSLQKNLIGSINSI
Ga0136709_102308513300011184FreshwaterMADVNANIGVHIDTSAALAELKNLQRQLATFHSSVAK
Ga0157607_106336623300012711FreshwaterMADVNANIGVGIDTSDALSQLKALQRQISQFHSSIAKSSEAAALAQRNLQKNFVNSINSI
Ga0157598_120061313300012712FreshwaterMSDVNANIKVSIDSSQALSELKSLQRQISLFHTNIAKSSAQAALAQRTLQ
Ga0157597_109905323300012726FreshwaterMSDVNANIKVSIDSSQALSELKSLQRQISLFHTNIAKSSAQAALAQRTLQT
Ga0157597_116186623300012726FreshwaterMADVNANIDINIDSSNALGQLKALQRQISQFHTSIARSSEAAALAQKGLQKNLLNSIN
Ga0157606_138586123300012733FreshwaterMSDVNANIKVSIDSSQALSELKSLQRQISLFHTNIAKSSAQAALAQRTLQTDL
Ga0129338_101540723300012970AqueousLADVNAEIGVNINTSGALAQLKALQREIARFHASVAKSSEAAALAQRDLQKNFLNGVNAI
Ga0129338_113380923300012970AqueousMADVNANIGVNIDTTQALAQLKALQRQISQFHTSIAKSSETAALAQRDLQRNFINSINSLGAFS
Ga0164294_1038323913300013006FreshwaterMADVNANIDINIDSSNALSQLKALQRQISQFHTSIARSSEAAALAQK
Ga0163212_124807023300013087FreshwaterMADVNANIDINIDSSNALAQLKALQRQISQFHTSIARSSEAAALAQKGLQKNLLNSINAI
(restricted) Ga0172367_1054317433300013126FreshwaterMADVNANIGVKIDTSQALAQLKALQRQISQFHTSIARSSESAALAQRSLQKNL
(restricted) Ga0172375_1095030213300013137FreshwaterMADVNANIGVNIDTSNALAKLIALQRQISQFHTNIARSSE
Ga0170791_1508914323300013295FreshwaterMADVNANIGVNIDTSQALAQLKALQRQISQFHSSISKSSEAAALAQRSLQKNLIGSINSI
Ga0177922_1061841133300013372FreshwaterMSDVNANIKVSIDSSQALSELKSLQRQISLFHTNIAKSSAQAALAQRTLQTDLLNAI
Ga0181343_105666333300017766Freshwater LakeMADVNANIGVSIDTSEALAQLKALQRQISQFHTSIAKSSESAALAQRSLQKNLIGS
Ga0194113_1049141833300020074Freshwater LakeMADVNANIGVNIDTSKALAQLKALQRQISQFHTSIARSSEAAALAQRSLQK
Ga0194110_1061633433300020084Freshwater LakeMADVNANIGVNIDTSKALAQLKALQRQISQFHTSIARSSE
Ga0211736_1025735053300020151FreshwaterVADVNANIDINIDSSNAISQLKSLQRQISQFHTSIAKSSESAALAQRGLEKNL
Ga0211735_1005127733300020162FreshwaterMADVNANIGVHIDTSAALAELKNLQRQLATFHSSVAKNSAASAAA
Ga0211735_1079110443300020162FreshwaterVADVNANIDINIDSSNAISQLKSLQRQISQFHTSIAKSSESAALAQRGLEKNLLNS
Ga0211729_1145453033300020172FreshwaterMADVNANIGIHIDSSAALAELKALQRQLATFHASIAKNSAASAAAQK
Ga0194128_1030383933300020197Freshwater LakeLADVNAEINVNIDTSGALAQLKALQREISRFHTSVAKSSDAAALAQRDLQKNF
Ga0194121_1018066113300020200Freshwater LakeMADVNANIGVNIDTSSALAQLKALQRQISQFHTNIARSSEAAGLAQK
Ga0208200_10428633300020487FreshwaterMADVNANIGVHIDASAALAELKNLQRQLATFHASIAKG
Ga0208050_102966223300020498FreshwaterMADVNANIGVNIDTSAALAQLKALQRQISQFHTSIAKSSESAALAQRDLQKNFLNSVNAIGSF
Ga0208235_104325613300020530FreshwaterMADVNANIGVNIDTSAALAQLKALQRQISQFHSSIAKSSESASIAQRSLQKNLLGS
Ga0208599_104275033300020554FreshwaterMADVNANIGVNIDTSAALAQLKALQRQISQFHTSIAKSS
Ga0194129_1027103913300020578Freshwater LakeVADVNANIGIHIDTSQSLAEIKNLQRQLAQLYTSIN
Ga0244775_1074919533300024346EstuarineVADVNANIDINIDSSNAISQLKSLQRQISQFHTSIAKSSESAALAQRGLEKNLLNSIN
Ga0244775_1135673923300024346EstuarineMADVNANIGINIDSSNALAQLKALQRQISQFHTSIARSSEAAALAQKGLQKNLLNSIN
Ga0256330_105841813300024481FreshwaterLADVNAEIGVNIDTSGALAQLKALQREIARFHTSVAKSSDAAALAQRDL
Ga0256348_108738723300024543FreshwaterLADVNAEIGVNINTSNALAQLKALQREIARFHASVAKSSEAAALAQRDLQKNFLNGVNAIQGFS
Ga0256342_114505323300024548FreshwaterMADVNANIGVNIDTTQALAQLKSLQRQISQFHSSIAKSSETAALAQRDLQRNFINSVNS
Ga0255280_110936323300024555FreshwaterLADVNAEIGVNIDTSGALAQLKALQREIARFHASVAKSSDAAALAQRDLQKNFINGVNAIQGF
Ga0256341_107818113300024556FreshwaterLADVNAEIGVNIDTSGALAQLKALQREIARFHTSVAKSSDAAALAQRDLQKNFI
Ga0255284_110027813300024559FreshwaterMADVNANIGVNIDTTQALAQLKSLQRQISQFHSSIAKSSETAALAQRDLQRNFINSVNSLGAFSRD
Ga0255282_109592713300024850FreshwaterLADVNAEIGVNIDTSGALAQLKALQREIARFHASVAKSSDAAALAQRDLQKNFINGVNAI
Ga0256339_111115013300024857FreshwaterMADVNANIGVNIDTSLALAQLKSLQRQISQFHTSIARSSETAALA
Ga0256339_112930023300024857FreshwaterLADVNAEIGVNIDTSGALAQLKALQREIARFHTSVAKSSDAAALAQRDLQKN
Ga0255267_116327013300024867FreshwaterLADVNAEIGVNIDTSGALAQLKALQREIARFHTSVAKSSDAAAL
Ga0208784_101035813300025732AqueousMSDVNANISVNIDTSAALAELKSLQRQISLFHASIA
Ga0255160_107228313300026457FreshwaterLADVNAEIGVNIDTSGALAQLKALQREIARFHTSVAKSSDAAALAQRDLQKNFINGVNAI
Ga0255166_108788113300026473FreshwaterMADVNANIGVNIDTSLALAQLKSLQRQISQFHTSIARSSE
Ga0255156_109826123300026478FreshwaterLADVNAEIGVSIDTSGALAQLKALQREIARFHTSVAKSSDAAALAQRDLQRNFING
Ga0255289_110996823300026571FreshwaterMADVNANIGVNIDTSLALAQLKSLQRQISQFHTSIARSSETAALAQKSLQKNF
Ga0255063_105182933300027151FreshwaterVADVNANIDINIDSSNAISQLKSLQRQISQFHTSIAKSS
Ga0255094_107297923300027494FreshwaterVADVNANIDINIDSSNAISQLKSLQRQISQFHTSIAKSSESAALAQRGLEKNLLNSINSI
Ga0209135_120261013300027642Freshwater LakeMADVNANIDINIDSSNALSQLKALQRQISQFHTSIAKSSEAAALAQKGLQKNLLNSINSI
Ga0209617_1022965013300027720Freshwater And SedimentVADVNANIDINIDSSNAISQLKSLQRQISQFHTSIAKSSESAALAQRGLEKNLLN
Ga0209442_106183343300027732Freshwater LakeMADVNANIGVNIDTSAALAQLKTLQRQISQFHSSIA
Ga0209442_130009123300027732Freshwater LakeMADVNANIGINIDSSNALAQLKALQRQISQFHTSIARSSEAAALAQK
Ga0209087_112519733300027734Freshwater LakeMSDVNANIGVHIDTSAALAELKALQKQLALFYSNVA
Ga0209190_119709333300027736Freshwater LakeMADVNANIGVNIDTSQALAQLKALQRQISQFHSSISKSSEAAALAQRS
Ga0209597_124656833300027746Freshwater LakeMADVNANIDINIDSSNALSQLKALQRQISQFHTSIARSSEAAALAQKGLQKNL
Ga0209768_1013626533300027772Freshwater LakeMADVNANIGINIDSSNALAQLKALQRQISQFHTSIARSSEAA
Ga0209500_1001308313300027782Freshwater LakeMADVNANIDINIDSSNALSQLKALQRQISQFHTSIA
Ga0209353_1031005533300027798Freshwater LakeVADVNANIDINIDSSNAISQLKSLQRQISQFHTSIAKSSESAALAQRGLEKNLLNSINS
Ga0209353_1046286223300027798Freshwater LakeMADVNANIGINIDSSNALAQLKALQRQISQFHTSIARSSEAAALAQKGLQKNLLNSINAIGS
Ga0209230_1043083613300027836Freshwater And SedimentMADVNANIGINIDSSNALAQLKALQRQISQFHTSIARSSEAAALAQKGLQKNLLNSINA
Ga0209230_1066402123300027836Freshwater And SedimentMADVNANIGVNIDTSAALAQLKTLQRQISQFHSSIARSSESAA
Ga0247723_104893913300028025Deep Subsurface SedimentMADVNANIGVNIDTSAALAQLKALQRQISQFHSSIARSSESAAIAQK
Ga0256335_114434323300028112FreshwaterLADVNAEIGVNIDTSGALAQLKALQREIARFHTSVAKSSDAAALAQRDLQKNF
Ga0256335_121187213300028112FreshwaterMADVNANIGVNIDTSLALAQLKSLQRQISQFHTSIARSSETAA
Ga0256333_11073913300028245FreshwaterLADVNAEIGVNIDTSGALAQLKALQREIARFHASVAKSSDAAALAQRDLQKNFINGVNA
Ga0256331_115800523300028286FreshwaterMADVNANIGVNIDTSLALAQLKSLQRQISQFHTSIARSSETAALAQKSLQKNFL
Ga0255279_109438113300028530FreshwaterLADVNAEIGVNIDTSGALAQLKALQREIARFHASVAKSSDAAALAQRDLQKNF
Ga0315907_1036997233300031758FreshwaterMADVNANIGVNIDTTQALAQLKSLQRQISQFHTSIAKSSETAALAQRDLQRNFIN
Ga0315907_1093091933300031758FreshwaterLADVNAEIGVSIDTSSALAQLKSLQREIARFHTSVAKSSDAAA
Ga0315909_1029025233300031857FreshwaterMADVNANIGVNIDTTQALAQLKSLQRQISQFHTSI
Ga0315904_1026959913300031951FreshwaterVADVNANIGVNIDTSNALAQLKALQRQISQFHTSIAKSSETASLAQRDLQRNFINGVNAI
Ga0315904_1030162313300031951FreshwaterVADVNANIGVNIDTSNALAQLKALQRQISQFHSSIAKSSETAA
Ga0315904_1042429313300031951FreshwaterMADVNANIGVNIDTTQALAQLKALQRQISQFHTSIAKSSESA
Ga0315904_1083665713300031951FreshwaterMSDANANISISIDTSAALSQLKALQRQISLFHTSVAKSTTTAARAQQ
Ga0315901_1020091813300031963FreshwaterMADVNANIDINIDSSNALAQLKSLQRQISQFHTSIAKSSEAAALAQRGLQ
Ga0315901_1078174313300031963FreshwaterMADVNANIGVNIDTSLALTQLKSLQRQISQFHTSIARSSETA
Ga0315906_1033664113300032050FreshwaterMADVNSNISINIDSSKALSQLKSLQRQIAQFHLSVAKSSE
Ga0315906_1129896813300032050FreshwaterMADVNANIGVNIDTSAALAQLKALQRQISQFHSSIAK
Ga0315903_1113396023300032116FreshwaterMADVNANIGVNIDTSAALAQLKALQRQISQFHTSIAKSSETATLAQRDLQKNFLNSV
Ga0334980_0339903_1_1473300033816FreshwaterMADVNANIGVNIDTSAALAQLKALQRQISQFHTSIAKSSESAAIAQKSL
Ga0334978_0127086_2_1123300033979FreshwaterMADVNANIGINIDSSNALAQLKALQRQISQFHTSIAR
Ga0334982_0502049_1_1233300033981FreshwaterMADVNANIGVNIDTSAALAQLKALQRQISQFHTSIAKSSET
Ga0334992_0440937_3_1643300033992FreshwaterMADVNANIGINIDSSNALAQLKALQRQISQFHTSIARSSEAAALAQKGLQKNLL
Ga0334979_0636786_1_1053300033996FreshwaterMADVNANIGVNIDTSEALAQLKALQRQISQFHSSI
Ga0334998_0394770_3_1463300034019FreshwaterMADVNANIDINIDSSNALAQLKALQRQISQFHTSIAKSSEAAALAQKG
Ga0335002_0426329_564_7283300034020FreshwaterMADVNANIGVNIDTSAALAQLKALQRQISQFHTSIAKSSETAALAQRDLQKNFLN
Ga0335005_0469253_587_7063300034022FreshwaterMADVNANIGIHIDSSAALAELKALQRQIATFHASVAKNSA
Ga0335021_0540097_415_5853300034023FreshwaterVADVNANIGVNIDTSNALSQLKALQRQISQFHTSISKSSEAAALAQRDLQRNFINSV
Ga0334995_0266651_1023_11423300034062FreshwaterMADVNANIDINIDSSAALAQLKSLQRQIAQFHTSIAKSSE
Ga0335019_0182379_1187_13663300034066FreshwaterMADVNANIGINIDSSNALGQLKALQRQISQFHTSIARSSEAAALAQKGLQKNLLNRINAI
Ga0334990_0342657_2_1123300034068FreshwaterMADVNANIGINIDSSNALGQLKALQRQISQFHTSIAR
Ga0335020_0534593_1_1233300034082FreshwaterMADVNANIGVNIDTSLALAQLKSLQRQISQFHSSIARSSET
Ga0335012_0144909_3_1733300034093FreshwaterMADVNANIDINIDSSNALAQLKALQRQISQFHTSISKSSEAAALAQKGLQKNLLNSV
Ga0335027_0217697_2_1093300034101FreshwaterMADVNANIDINIDSSNALAQLKALQRQISQFHTSIA
Ga0335036_0201310_1205_13783300034106FreshwaterMADVNANIGVNIDTSAALAQLKALQRQISQFHSSIARSSESAALALKSLQKNLIGSIN
Ga0335036_0207680_3_1223300034106FreshwaterMADVNANIGVNIDTSAALAQLKALQRQISQFHTSIAKSSE
Ga0335036_0429306_2_1183300034106FreshwaterMADVNANIGVHIDTSAALAELKNLQRQLANFHSSVAKNS
Ga0335053_0299010_850_10113300034118FreshwaterMADVNANIGVNIDTSAALSQLKALQRQISQFHSSIAKSSESAALAQRSLQKNLI
Ga0335065_0635038_462_6173300034200FreshwaterMADVNANIGVNIDTSAALAQLKALQRQISQFHTSIAKSSETAALAQRDLQKN
Ga0335049_0301045_910_10833300034272FreshwaterMADVNANIDINIDSSNAISQLKSLQRQISQFHTSIAKSSQTAALAQRDLEKNLLNSIN
Ga0335049_0392457_2_1453300034272FreshwaterMADVNANIGVHIDTSAALAELKNLQRQLATFHGSIAKGSAASAMAQKS
Ga0335007_0148435_1535_16783300034283FreshwaterMADVNANIGVNIDTSEALAQLKALQRQISQFHTSVAKSSEAAGLAQRD
Ga0335007_0288431_2_1543300034283FreshwaterMADVNANIDININSSNALAQLKSLQKQIAQFHTSIAKSSESAALAQRGLQK
Ga0335007_0600336_532_6363300034283FreshwaterMADVNANIDINIDSSNALAQLKSLQRQIAQFHTSI
Ga0335013_0296334_895_10293300034284FreshwaterMADVNANIDINIDSSNAISQLKSLQRQISQFHTSIAKSSESAALA
Ga0335013_0639868_2_1933300034284FreshwaterMADVNANIGVNIDTSAALAQLKTLQRQISQFHTSIAKSSETAALAQRDLQKNFLNSVNAIGAFS
Ga0335013_0674320_1_1893300034284FreshwaterMADVNANIGINIDSSNALAQLKALQRQISQFHTSIARSSEAAALAQKGLQKNLLNSINAINGF
Ga0335013_0687965_2_1423300034284FreshwaterMADVNANIGVNIDTSEALAQLKALQRQISQFHTSIAKSSESAAMAQK
Ga0335048_0047684_2660_27883300034356FreshwaterMADVNANIGVNIDTSEALAQLKALQRQISQFHTSIAKSSETAG
Ga0335048_0501362_2_1333300034356FreshwaterMADVNANIGVNIDTSAALAQLKALQRQISQFHSSIAKSSESATI


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.