Metagenome / Metatranscriptome Family F053592

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F053592
Family Type	Metagenome / Metatranscriptome
Number of Sequences	141
Average Sequence Length	55 residues
Representative Sequence	MDVQTDERLLRNIEGYLIELVCNVESMDEVNLVAEVLVSVQDALRDLAQKPRFAA
Number of Associated Samples	85
Number of Associated Scaffolds	141

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.98 %
% of genes near scaffold ends (potentially truncated)	23.40 %
% of genes from short scaffolds (< 2000 bps)	73.76 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.355 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil (19.149 % of family members)
Environment Ontology (ENVO)	Unclassified (58.156 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.411 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.60% β-sheet: 0.00% Coil/Unstructured: 49.40%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 141 Family Scaffolds
PF00196	GerE	9.93
PF00072	Response_reg	3.55
PF07730	HisKA_3	2.84
PF07963	N_methyl	2.84
PF00118	Cpn60_TCP1	2.13
PF03459	TOBE	2.13
PF00589	Phage_integrase	2.13
PF01381	HTH_3	2.13
PF13544	Obsolete Pfam Family	2.13
PF00211	Guanylate_cyc	1.42
PF01402	RHH_1	1.42
PF02633	Creatininase	1.42
PF10615	DUF2470	1.42
PF13185	GAF_2	0.71
PF00483	NTP_transferase	0.71
PF07508	Recombinase	0.71
PF01568	Molydop_binding	0.71
PF03330	DPBB_1	0.71
PF05711	TylF	0.71
PF13531	SBP_bac_11	0.71
PF01245	Ribosomal_L19	0.71
PF14329	DUF4386	0.71
PF13883	Pyrid_oxidase_2	0.71
PF04964	Flp_Fap	0.71
PF08031	BBE	0.71
PF12728	HTH_17	0.71
PF09656	PGPGW	0.71
PF00027	cNMP_binding	0.71
PF13387	DUF4105	0.71
PF13476	AAA_23	0.71
PF00174	Oxidored_molyb	0.71
PF03781	FGE-sulfatase	0.71
PF11937	DUF3455	0.71
PF05598	DUF772	0.71
PF13493	DUF4118	0.71
PF13564	DoxX_2	0.71
PF00106	adh_short	0.71

COG ID	Name	Functional Category	% Frequency in 141 Family Scaffolds
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	2.84
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	2.84
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	2.84
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	2.84
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	2.13
COG1402	Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)	Coenzyme transport and metabolism [H]	1.42
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.42
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.71
COG0335	Ribosomal protein L19	Translation, ribosomal structure and biogenesis [J]	0.71
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.71
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.71
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.71
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	0.71
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.77 %
Unclassified	root	N/A	48.23 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.06 %
Unclassified	root	N/A	48.23 %
Viruses	superkingdom	All Organisms → Viruses	0.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.35 %
Unclassified	root	N/A	48.23 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.23 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	30.50 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.71 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.23 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	9.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.67 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.71 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.23 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	8.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.67 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.71 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.23 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.67 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	0.71 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.23 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.67 %
Bacteroidetes bacterium 13_1_20CM_4_60_6	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	0.71 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001167\|JGI12673J13574_1010232	Not Available	560	Open in IMG/M
3300001648\|JGI20242J16303_103126	Not Available	815	Open in IMG/M
3300001867\|JGI12627J18819_10008607	All Organisms → cellular organisms → Bacteria	3974	Open in IMG/M
3300001867\|JGI12627J18819_10046621	All Organisms → cellular organisms → Bacteria	1811	Open in IMG/M
3300001867\|JGI12627J18819_10061432	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1564	Open in IMG/M
3300001867\|JGI12627J18819_10076992	All Organisms → cellular organisms → Bacteria → Acidobacteria	1386	Open in IMG/M
3300001867\|JGI12627J18819_10078697	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1369	Open in IMG/M
3300003370\|JGI26337J50220_1009592	Not Available	1141	Open in IMG/M
3300004080\|Ga0062385_10048069	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1828	Open in IMG/M
3300004080\|Ga0062385_11198213	Not Available	519	Open in IMG/M
3300004082\|Ga0062384_100557879	Not Available	769	Open in IMG/M
3300004082\|Ga0062384_101141094	Not Available	564	Open in IMG/M
3300004091\|Ga0062387_100017232	All Organisms → cellular organisms → Bacteria → Acidobacteria	2889	Open in IMG/M
3300004092\|Ga0062389_100073013	All Organisms → cellular organisms → Bacteria → Acidobacteria	2889	Open in IMG/M
3300005434\|Ga0070709_10038227	All Organisms → cellular organisms → Bacteria	2937	Open in IMG/M
3300005435\|Ga0070714_100302824	Not Available	1491	Open in IMG/M
3300005436\|Ga0070713_100392447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1295	Open in IMG/M
3300005536\|Ga0070697_100179798	All Organisms → cellular organisms → Bacteria → Acidobacteria	1793	Open in IMG/M
3300005591\|Ga0070761_10059427	All Organisms → cellular organisms → Bacteria	2158	Open in IMG/M
3300005591\|Ga0070761_10220421	Not Available	1128	Open in IMG/M
3300005591\|Ga0070761_10962513	Not Available	541	Open in IMG/M
3300005764\|Ga0066903_102955672	Not Available	921	Open in IMG/M
3300005921\|Ga0070766_10512986	Not Available	798	Open in IMG/M
3300005921\|Ga0070766_11076417	Not Available	554	Open in IMG/M
3300006163\|Ga0070715_10442017	Not Available	732	Open in IMG/M
3300006172\|Ga0075018_10650635	Not Available	565	Open in IMG/M
3300006175\|Ga0070712_101318882	Not Available	629	Open in IMG/M
3300006175\|Ga0070712_101661443	Not Available	559	Open in IMG/M
3300006176\|Ga0070765_100001228	All Organisms → cellular organisms → Bacteria → Acidobacteria	15549	Open in IMG/M
3300006176\|Ga0070765_100009415	All Organisms → cellular organisms → Bacteria	6746	Open in IMG/M
3300006176\|Ga0070765_100127754	All Organisms → cellular organisms → Bacteria	2238	Open in IMG/M
3300006893\|Ga0073928_10001391	All Organisms → cellular organisms → Bacteria	46972	Open in IMG/M
3300010048\|Ga0126373_10185629	All Organisms → cellular organisms → Archaea	2004	Open in IMG/M
3300010343\|Ga0074044_10030274	All Organisms → cellular organisms → Bacteria	3820	Open in IMG/M
3300010358\|Ga0126370_10889654	All Organisms → cellular organisms → Bacteria → Acidobacteria	803	Open in IMG/M
3300010361\|Ga0126378_10018806	All Organisms → cellular organisms → Bacteria	5904	Open in IMG/M
3300010361\|Ga0126378_10272385	All Organisms → cellular organisms → Bacteria	1791	Open in IMG/M
3300010361\|Ga0126378_10368974	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300010376\|Ga0126381_100003214	All Organisms → cellular organisms → Bacteria → Acidobacteria	17817	Open in IMG/M
3300011120\|Ga0150983_13514959	Not Available	540	Open in IMG/M
3300011120\|Ga0150983_14882699	Not Available	1313	Open in IMG/M
3300020579\|Ga0210407_10103484	All Organisms → cellular organisms → Bacteria → Acidobacteria	2165	Open in IMG/M
3300020581\|Ga0210399_10111070	Not Available	2247	Open in IMG/M
3300020581\|Ga0210399_10667585	All Organisms → cellular organisms → Bacteria → Acidobacteria	856	Open in IMG/M
3300020582\|Ga0210395_10056384	All Organisms → cellular organisms → Bacteria → Acidobacteria	2880	Open in IMG/M
3300020583\|Ga0210401_10035907	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4707	Open in IMG/M
3300020583\|Ga0210401_10699777	Not Available	874	Open in IMG/M
3300021168\|Ga0210406_11116466	Not Available	579	Open in IMG/M
3300021171\|Ga0210405_10022746	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5066	Open in IMG/M
3300021171\|Ga0210405_10278208	Not Available	1323	Open in IMG/M
3300021403\|Ga0210397_10328307	Not Available	1129	Open in IMG/M
3300021404\|Ga0210389_11189586	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	587	Open in IMG/M
3300021406\|Ga0210386_10575528	Not Available	973	Open in IMG/M
3300021407\|Ga0210383_10757767	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	832	Open in IMG/M
3300021420\|Ga0210394_10602421	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300021432\|Ga0210384_10316590	All Organisms → cellular organisms → Bacteria	1405	Open in IMG/M
3300021432\|Ga0210384_10799404	Not Available	841	Open in IMG/M
3300021432\|Ga0210384_11582221	Not Available	561	Open in IMG/M
3300021475\|Ga0210392_10896454	Not Available	663	Open in IMG/M
3300021560\|Ga0126371_10066196	All Organisms → cellular organisms → Bacteria	3500	Open in IMG/M
3300022557\|Ga0212123_10000910	All Organisms → cellular organisms → Bacteria	89054	Open in IMG/M
3300022712\|Ga0242653_1097712	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300022731\|Ga0224563_1002985	All Organisms → Viruses → Predicted Viral	1125	Open in IMG/M
3300024225\|Ga0224572_1015707	Not Available	1452	Open in IMG/M
3300024227\|Ga0228598_1006615	All Organisms → cellular organisms → Bacteria	2394	Open in IMG/M
3300024271\|Ga0224564_1070190	Not Available	697	Open in IMG/M
3300025915\|Ga0207693_10379107	Not Available	1106	Open in IMG/M
3300025922\|Ga0207646_11505562	Not Available	583	Open in IMG/M
3300026467\|Ga0257154_1006437	Not Available	1543	Open in IMG/M
3300027050\|Ga0209325_1021924	Not Available	748	Open in IMG/M
3300027061\|Ga0209729_1021282	Not Available	784	Open in IMG/M
3300027071\|Ga0209214_1032039	Not Available	695	Open in IMG/M
3300027104\|Ga0208095_1007764	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	741	Open in IMG/M
3300027266\|Ga0209215_1032451	Not Available	700	Open in IMG/M
3300027326\|Ga0209731_1004398	Not Available	1711	Open in IMG/M
3300027326\|Ga0209731_1005931	Not Available	1527	Open in IMG/M
3300027371\|Ga0209418_1098819	Not Available	523	Open in IMG/M
3300027548\|Ga0209523_1044221	Not Available	908	Open in IMG/M
3300027605\|Ga0209329_1010736	All Organisms → cellular organisms → Bacteria	1737	Open in IMG/M
3300027605\|Ga0209329_1026257	Not Available	1193	Open in IMG/M
3300027729\|Ga0209248_10060169	Not Available	1160	Open in IMG/M
3300027737\|Ga0209038_10002122	All Organisms → cellular organisms → Bacteria	5910	Open in IMG/M
3300027783\|Ga0209448_10140592	All Organisms → cellular organisms → Bacteria → Acidobacteria	807	Open in IMG/M
3300027795\|Ga0209139_10087170	Not Available	1097	Open in IMG/M
3300027853\|Ga0209274_10413491	Not Available	697	Open in IMG/M
3300027884\|Ga0209275_10010887	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3889	Open in IMG/M
3300027889\|Ga0209380_10072792	All Organisms → cellular organisms → Bacteria	1965	Open in IMG/M
3300027889\|Ga0209380_10104817	All Organisms → cellular organisms → Bacteria	1636	Open in IMG/M
3300027889\|Ga0209380_10184062	Not Available	1225	Open in IMG/M
3300027889\|Ga0209380_10187715	All Organisms → cellular organisms → Bacteria → Acidobacteria	1213	Open in IMG/M
3300028906\|Ga0308309_10000433	All Organisms → cellular organisms → Bacteria	27222	Open in IMG/M
3300028906\|Ga0308309_10000486	All Organisms → cellular organisms → Bacteria → Acidobacteria	25474	Open in IMG/M
3300028906\|Ga0308309_10001100	All Organisms → cellular organisms → Bacteria → Acidobacteria	16058	Open in IMG/M
3300030848\|Ga0075388_10875514	Not Available	690	Open in IMG/M
3300030862\|Ga0265753_1066975	Not Available	671	Open in IMG/M
3300031057\|Ga0170834_102240507	Not Available	1360	Open in IMG/M
3300031057\|Ga0170834_110705969	Not Available	659	Open in IMG/M
3300031057\|Ga0170834_112756364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2275	Open in IMG/M
3300031057\|Ga0170834_113005585	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2073	Open in IMG/M
3300031122\|Ga0170822_14531683	Not Available	686	Open in IMG/M
3300031122\|Ga0170822_16243152	All Organisms → cellular organisms → Bacteria → Acidobacteria	1338	Open in IMG/M
3300031128\|Ga0170823_13127834	Not Available	1618	Open in IMG/M
3300031231\|Ga0170824_114708330	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	838	Open in IMG/M
3300031231\|Ga0170824_118900046	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300031231\|Ga0170824_119977822	Not Available	508	Open in IMG/M
3300031474\|Ga0170818_103934844	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300031708\|Ga0310686_101899497	All Organisms → cellular organisms → Bacteria → Acidobacteria	7442	Open in IMG/M
3300031708\|Ga0310686_108118119	All Organisms → cellular organisms → Bacteria → Acidobacteria	2392	Open in IMG/M
3300031708\|Ga0310686_112574269	Not Available	2848	Open in IMG/M
3300031708\|Ga0310686_112967506	Not Available	616	Open in IMG/M
3300031708\|Ga0310686_113848739	Not Available	1161	Open in IMG/M
3300031708\|Ga0310686_114360470	All Organisms → cellular organisms → Bacteria → Acidobacteria	27590	Open in IMG/M
3300031708\|Ga0310686_116648154	Not Available	949	Open in IMG/M
3300031715\|Ga0307476_10159448	All Organisms → cellular organisms → Bacteria	1624	Open in IMG/M
3300031715\|Ga0307476_10433124	Not Available	972	Open in IMG/M
3300031715\|Ga0307476_11361370	Not Available	517	Open in IMG/M
3300031718\|Ga0307474_10098622	Not Available	2184	Open in IMG/M
3300031718\|Ga0307474_10182829	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1591	Open in IMG/M
3300031718\|Ga0307474_10357064	All Organisms → cellular organisms → Bacteria	1132	Open in IMG/M
3300031718\|Ga0307474_10622493	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	851	Open in IMG/M
3300031718\|Ga0307474_11024293	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300031720\|Ga0307469_10793207	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	868	Open in IMG/M
3300031753\|Ga0307477_10053926	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2765	Open in IMG/M
3300031754\|Ga0307475_10034661	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3695	Open in IMG/M
3300031754\|Ga0307475_10707653	Not Available	803	Open in IMG/M
3300031754\|Ga0307475_11213355	Not Available	587	Open in IMG/M
3300031820\|Ga0307473_10351403	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	948	Open in IMG/M
3300031823\|Ga0307478_10281019	Not Available	1359	Open in IMG/M
3300031942\|Ga0310916_10908555	Not Available	738	Open in IMG/M
3300031962\|Ga0307479_10016515	All Organisms → cellular organisms → Bacteria	6938	Open in IMG/M
3300031962\|Ga0307479_10051572	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3953	Open in IMG/M
3300031962\|Ga0307479_10648509	Not Available	1036	Open in IMG/M
3300031962\|Ga0307479_10709274	All Organisms → cellular organisms → Bacteria → Acidobacteria	984	Open in IMG/M
3300031962\|Ga0307479_10758176	Not Available	947	Open in IMG/M
3300031962\|Ga0307479_10922274	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	845	Open in IMG/M
3300031962\|Ga0307479_11429399	Not Available	650	Open in IMG/M
3300031962\|Ga0307479_11438364	Not Available	647	Open in IMG/M
3300031962\|Ga0307479_11839908	Not Available	557	Open in IMG/M
3300032180\|Ga0307471_100248692	All Organisms → cellular organisms → Bacteria → Acidobacteria	1828	Open in IMG/M
3300032205\|Ga0307472_100468256	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1076	Open in IMG/M
3300032205\|Ga0307472_102122389	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	565	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.58%
Host-Associated	Host-Associated	1.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.65%
Aquatic	Environmental → Aquatic	9.93%
Plants	Host-Associated → Plants	1.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.65%
Freshwater	Environmental → Aquatic → Freshwater	7.80%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.42%
Sediment	Environmental → Aquatic → Sediment	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.61%
Loam	Environmental → Terrestrial → Soil → Loam	33.33%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.80%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.71%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.71%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	26.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.06%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.38%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	19.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	14.18%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	12.06%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	7.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	7.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.09%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.96%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.42%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.71%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001167	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2	Environmental	Open in IMG/M
3300001648	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300003370	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022731	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU4	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027104	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF024 (SPAdes)	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030848	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12673J13574_10102321	3300001167	Forest Soil	MDVQTDARLLRNIEGYLIELVCSVKSMEEANLLAEALVSVQDALRDLEQKPRFAARSNRECRRRREPAAQLPLGGRSR
JGI20242J16303_1031262	3300001648	Forest Soil	VDAQADERFLRNIEGYLMELVCHVESIDGVGLIADVLVSVKDALRDLDQRPRPARDSLGS
JGI12627J18819_100086073	3300001867	Forest Soil	MDVQTDERLLRNIEGYLIELVCSVESMDEVTLLAEVLVSVQDALRDLEPRFVA*
JGI12627J18819_100466213	3300001867	Forest Soil	MDVRTEKLLRNLEGYLIELVCCVKSTDEVNLVAEALGSVQEALKELGQKTI*
JGI12627J18819_100614323	3300001867	Forest Soil	MDVETDARTLRNIEGYLIELVCSAESMDDVNLLAEVLVSVQDALRDLEPRFVA*
JGI12627J18819_100769921	3300001867	Forest Soil	SREEDDMDVQTDARLLRNIEGYLIELVCNVKSMEEVNLLAEALVSVQDALRDLEQKPRFAA*
JGI12627J18819_100786971	3300001867	Forest Soil	MDAQTDERLLRNIEGYLIELICIVESMDEVNLVADVLVSVQDALRDLAQKPRFTWHE*
JGI26337J50220_10095922	3300003370	Bog Forest Soil	MDVQTDERLLRNIEGYLVQLVSRVESLSIDEVSLIADVLASVQDALRYLAQEPRSAA*
Ga0062385_100480693	3300004080	Bog Forest Soil	MEHPSDERFLRNIEGYLTELVLNVENIDEVSLIADVLVSVQAALRDLGQEPRSSLRTN*
Ga0062385_111982131	3300004080	Bog Forest Soil	MDVQTDERLLRNVEGYLMELVCHVESIDEVNLIADVLASVQETLRYSAHKPRSAA*
Ga0062384_1005578793	3300004082	Bog Forest Soil	MDVETHERTLRNLEGYLMQLVSRVESMSIDEVSLIAEVLASVQDALRDLAQEEV*
Ga0062384_1011410941	3300004082	Bog Forest Soil	MDVQTDERLLRNIEGYLMQLVCRVESISIDEVSLVADVLASVQDALRDLAQKEV*
Ga0062387_1000172327	3300004091	Bog Forest Soil	MEVQTDERLLRNIEGYLVQLVSRVESLSIDEVSLIAEVLASVQDALRDLAQ*
Ga0062389_1000730133	3300004092	Bog Forest Soil	MEVQTDERLLRNIEGYLVQLVSRVESLSIDEVSLIAEVLASVQDALRDLAQEEV*
Ga0070709_100382273	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MDIQTDARFLRNIEGYLIELICSVETIGEVNALAEVLILVQDTLRELEQEPRFAA*
Ga0070714_1003028243	3300005435	Agricultural Soil	MDVETDARFLRNIEGYLIELICSAKTIGEVNLLAEALVSVQDALRDLEPRFVA*
Ga0070713_1003924471	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDVETDARSLRNIEGYLIELICSAKTMGEVSLLAEVLVSVQDALRDLEPRFVA*
Ga0070697_1001797982	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MDVQTDARLLRNIEGYLIELVCNVKSMEEVNLLAEALVSVQDALRDLEQTPRFAA*
Ga0070761_100594271	3300005591	Soil	MDAQTNERFLRNIEGYLMELVCNVESIDEVNVIADVLVSVQDALRDLSQMRGFSAP*
Ga0070761_102204211	3300005591	Soil	KEDDMNVQTDERILGNIEGYLMELVCNVENIDQADLVADVLVAVQDALRDLAQKPRFVA*
Ga0070761_109625131	3300005591	Soil	MDATTDERLLRDIEGYLMELVCRVESIDEVSLIADVLVSVQDALRDLAQEPRSAA*
Ga0066903_1029556722	3300005764	Tropical Forest Soil	MTDERFLRNIEGYLIELVCSVESMDEVNLVAEVLVSVQDALRGLAQKPRFAA*
Ga0070766_105129862	3300005921	Soil	MNVQTDERILGNIEGYLMELVCNVENIDQADLVADVLVAVQDALRDLAQKPRFVA*
Ga0070766_110764171	3300005921	Soil	MDIQTDARLLRNIEGYLIELICNVKSIEEVNALAEVLVFVQDNLRELEQEPRFAA*
Ga0070715_104420172	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MDVETDARSLRNIEGYLIELICSAKTIGEVNLLAEALVSVQDALRDLEPRFVA*
Ga0075018_106506351	3300006172	Watersheds	MDVQTDERLLRDIEGYLIELVCNVESMDELNLVAEALVSVQDALRHLAQEPICSRIQEEN
Ga0070712_1013188821	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MDVETDARFLRNIEGYLIELICSAKTMGEVSLLAEVLVSVQDALRDLEPRFVA*
Ga0070712_1016614431	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MDIQTDARFLRNIEGYLIELICSVESIGEVNALAEVLVLVQDTLRELEQEPRFAA*
Ga0070765_10000122814	3300006176	Soil	MNPQTDERLLRNIEGYLTELVLGVESIDEVSLIADVLVSVKAALRDLGQKPESAA*
Ga0070765_1000094158	3300006176	Soil	MDVQTDERLLRNIEGYLMELVCNVENIHQVNLVADVLVSVQDALRDLAQK
Ga0070765_1001277543	3300006176	Soil	MDVQTDERLVRNIEGYLMELVCNVENIHQVNLVADVLVSVQDALRDLAQK
Ga0073928_100013914	3300006893	Iron-Sulfur Acid Spring	MDVQTDERLRRNIEGYVSELLCDTKSMEELNVLAEVLVSVQDALRDLDQKPRFAA*
Ga0126373_101856291	3300010048	Tropical Forest Soil	VIAFLKGDHMDVHADARLLRNIEGYLKELVCCVESMDEVNLVSEALISVQDALRDRENHDL*
Ga0074044_100302746	3300010343	Bog Forest Soil	MDVQTDERLLRSIEGYLMELVCNVESIDQVNLVADVLVSVQDALRDLAQKPRFVA*
Ga0126370_108896542	3300010358	Tropical Forest Soil	MLLARVIAFQKGGDMDVHTDARLLRNIEGYLMELVCCVESMDEVNLVSEALVSVQDTLRDLDQEPRFVA*
Ga0126378_1001880610	3300010361	Tropical Forest Soil	MLLARVIAFQKGDDMDVHTDARLLRNIEGYLMELVCCVESMDEVNLVSEALVSVQDTLRDLDQEPRFAA*
Ga0126378_102723851	3300010361	Tropical Forest Soil	MDIQTDARFLRNIEGYLIELICSVESRGEVNALAEVLVLVQDTLRELEQEPRFAA*
Ga0126378_103689743	3300010361	Tropical Forest Soil	VIAFLKGDDMDVHADAGLLRNIEGYLMELVCCVESMDEVNLVSEALISVQDALRDRENHATALCE
Ga0126381_10000321415	3300010376	Tropical Forest Soil	MLSESSYGIPERDIDMDIQTDARFLRNIEGYLIELICSVESRGEVNALAEVLVLVQDTLRELEQEPRFAA*
Ga0150983_135149591	3300011120	Forest Soil	LTLRNIEGYLTELVCHVESIDGVSLIADVLVSVQDALRDLDQRPRST*
Ga0150983_148826991	3300011120	Forest Soil	MDVQTDERLLRNIEGYLMELVCNVENIHQVNLVADVLVSVQDALRDLAQKPRFVA*
Ga0210407_101034843	3300020579	Soil	MDVQTDERLLRNIEGYLIELVCNVKSMDEVNLVAAALVSVQDALRDLAQEPICSRIQS
Ga0210399_101110702	3300020581	Soil	MDIQTDARLLRNIEGYLIELICNVKSIEEVNALAEVLVFVQDNLRELEQEPRFAA
Ga0210399_106675852	3300020581	Soil	MDVQADELLLINIESYLIELLCNVESIDELDLVAEALVSVQDALRDLAQKPGFQSR
Ga0210395_100563844	3300020582	Soil	MDVQTDERLLINIEGYLIELVCNVESMDQVNLVAEALVSVQDALGHLAQEPIYSWIPS
Ga0210401_100359072	3300020583	Soil	MDIQTDARFLRNIEGYLIELICSVESIGEVNALAEVLVLVQDILRELEQEPRFAA
Ga0210401_106997771	3300020583	Soil	MNPQTDERLLRNIEGYLTELVLGVESIDEVSLIADVLVSVKAALRDLGQKPEPAA
Ga0210406_111164662	3300021168	Soil	YLIELVCSAESMDDVNLLAEVLVSVQDALRDLEPRFVA
Ga0210405_100227468	3300021171	Soil	MDIQSDARFLRNIEGYLIELICSVESMGEVNALAEVLVLVQDTLRELEQEPRFAV
Ga0210405_102782082	3300021171	Soil	MEIRTDEQLLRNIEGYLMQLVSRVESLSIDEVSLIAEVVASVQDALRT
Ga0210397_103283072	3300021403	Soil	MDVQTDERLLRNIEGYLIELVCNVESMDEVNLVAEVLVSVQDALRDLAQKPRFAA
Ga0210389_111895861	3300021404	Soil	MDVQADERLLINIESYLIELLCNAQSMDEVNLVAEALVSVQDVLRHLVQEPICSRI
Ga0210386_105755282	3300021406	Soil	SGDRTAERNIDMDIQTDARFLRNIEGYLIELICSVESIGEVNALAEVLVLVQDILRELEQEPRFAA
Ga0210383_107577671	3300021407	Soil	MDVQTDERLLRDIEGYLIELVCNVERKDEAGLIAEALVSVQDALRNPAQKPICR
Ga0210394_106024212	3300021420	Soil	VDAQTDERILRNIEGYLIELVFVVESIDQVSLVADVLVSVQDALRDLAQKPGSATKRN
Ga0210384_103165902	3300021432	Soil	MDVRTDERLLRNIEGYLMELVCSVESIDGVSLIADVLVSVQDALRDLSRKPPSAT
Ga0210384_107994041	3300021432	Soil	MKKRELTLRNIEGYLTELVCHVESIDGVSLIADVLVSVQDALRDLDQRPRST
Ga0210384_115822212	3300021432	Soil	MDVQTDERLLRNIEGYLMELVCNVENIHQVNLVADVLVSVQDALRDLAQKPRFVA
Ga0210392_108964543	3300021475	Soil	SRKEDDMDVQTDERLLRNIEGYLIELVCNVKSMDEVNLVATALVSVQDALRDLAQEPICSRIQS
Ga0126371_100661962	3300021560	Tropical Forest Soil	MTDERFLRNIEGYLIELVCSVESMDEVNLVAEVLVSVQDALRGLTQKPRFAA
Ga0212123_100009103	3300022557	Iron-Sulfur Acid Spring	MDVQTDERLRRNIEGYVSELLCDTKSMEELNVLAEVLVSVQDALRDLDQKPRFAA
Ga0242653_10977122	3300022712	Soil	MDVQADERLLINIESYLIELLCNAQSMDEVNLVAEALVSVQDAVLAQKPRFAA
Ga0224563_10029852	3300022731	Soil	MDAQTDERFLRNIEGYLMELVCNVESIDEVNVIADVLVSVQDALRDLGQKPGFSAP
Ga0224572_10157071	3300024225	Rhizosphere	MDVQTDERRLRNFEGFLMELVCTVESIDEVNLIADVLFWVQEDLRDLDQKSQSAA
Ga0228598_10066154	3300024227	Rhizosphere	MDVQTDERLLRNIEGYLMELVCNVESIDQVNLLADVLVTVQDALRDLTQKPRSAA
Ga0224564_10701901	3300024271	Soil	MDVQTDERLLRNFEGYLMELVCTVESIDEVNLIADVLFWVQEGLRDLGAKPRYAA
Ga0207693_103791071	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	RFLRNIEGYLIELICSVESIGEVNALAEVLVLVQDTLRELEQEPRFAA
Ga0207646_115055622	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LLRNIEGYLIELVCSVESMDEVTLLAEVLVSVQDALRDLEPRFVA
Ga0257154_10064371	3300026467	Soil	MDVQTHERLLRNIEGYLMQLVSRVESLSIDEVSLIAEVLASVHDALRYVAHEPRSVA
Ga0209325_10219241	3300027050	Forest Soil	MDVETDARTLRNIEGYLMELVCNVESIDQVNLVADVLVSVQDALRDLEPRFVA
Ga0209729_10212823	3300027061	Forest Soil	MDVQTDARLLRNIEGYLIELVCNVKSMEEVNLLAEALVSVQDALRDLEQKPRFAA
Ga0209214_10320392	3300027071	Forest Soil	MDVQTDARLLRNIEGYLIELVCNVKSMEEVNLLAEALVSVQDALRDLEQTPRFAA
Ga0208095_10077642	3300027104	Forest Soil	MDVQTDERLLQDIEGYLIELVCNVERKDEVNLVAEALVSVQDALRDPAQKPICRPDSNR
Ga0209215_10324511	3300027266	Forest Soil	MDVQTDERLLRNIEGYLIELVCSVESMDEVNLVADVLVSVQDALRDLAQKPRFTWHE
Ga0209731_10043982	3300027326	Forest Soil	MDVRTEKLLRNLEGYLIELVCCVKSTDEVNLVAEALGSVQEALKELGQKTI
Ga0209731_10059313	3300027326	Forest Soil	MDAQTDERLLRNIEGYLIELICIVESMDEVNLVADVLVSVQDALRDLAQKPRFTWHE
Ga0209418_10988191	3300027371	Forest Soil	MDIQTDARLLRNMEGFLIELICNVKSIEEVNALAEVLVFVQDNLRELEQEPRFAA
Ga0209523_10442211	3300027548	Forest Soil	MDVQTDERLLRNIEGYLIELVCSVESMDEVTLLAEVLVSVQDALRDLEPRFVA
Ga0209329_10107362	3300027605	Forest Soil	MDVQTNARLLRNIEGYLIELVCNVKSMEEVNLLAEALVSVQDALRDLEQKPRFAA
Ga0209329_10262571	3300027605	Forest Soil	MEVQTDKRLLRNIEGYVSELLCDTKSMDELNLLADVLVSVQDALRDLNQKPRFAA
Ga0209248_100601692	3300027729	Bog Forest Soil	MDVQTDERLLRNIEGYLVQLVSRVESLSIDEVSLIADVLASVQDALRYLAQEPRSAA
Ga0209038_100021221	3300027737	Bog Forest Soil	MEHPSDERFLRNIEGYLTELVLNVENIDEVSLIADVLVSVQAALRDLGQEPRSSLRTN
Ga0209448_101405922	3300027783	Bog Forest Soil	MEVQTDERLLRNIEGYLVQLVSRVESLSIDEVSLIAEVLASVQDALRDLAQEEV
Ga0209139_100871702	3300027795	Bog Forest Soil	MEVQTDERLLRNIEGYLVQLVSRVESLSIDEVSLIAEVLASVQDALRDLAQ
Ga0209274_104134911	3300027853	Soil	MDAQTNERFLRNIEGYLMELVCNVESIDEVNVIADVLVSVQDALRDLSQMRGFSAP
Ga0209275_100108871	3300027884	Soil	MDVQTDERILRSIEGYLMELVCNVESLDEVTLIADVLVSVQNALRDL
Ga0209380_100727921	3300027889	Soil	MDVQTDERLVRNIEGYLMELVCNVENIHQVNLVADVLVSVQDA
Ga0209380_101048172	3300027889	Soil	MDVQTDERLLRNIEGYLMELVCNVENIHQVNLVADVLVSVQDA
Ga0209380_101840623	3300027889	Soil	RNIEGYLMELVCNVENIHQVNLVADVLVSVQDALRDLAQKPRFVA
Ga0209380_101877151	3300027889	Soil	MNVQTDERILGNIEGYLMELVCNVENIDQADLVADVLVAVQDALRDLAQKPRFVA
Ga0308309_100004331	3300028906	Soil	MDVQTDERLLRNIEGYLMELVCNVENIHQVNLVADVLVSVQDALRD
Ga0308309_1000048631	3300028906	Soil	MDVQTDERLVRNIEGYLMELVCNVENIHQVNLVADVLVSVQDALRDLAQKPRFVA
Ga0308309_100011005	3300028906	Soil	MNPQTDERLLRNIEGYLTELVLGVESIDEVSLIADVLVSVKAALRDLGQKPESAA
Ga0075388_108755141	3300030848	Soil	MDIQTDARFLRNIEGYLIELICSVESIDEVSLLAEALVLVQDTLRELEQEPRFAA
Ga0265753_10669751	3300030862	Soil	MDVQTDERLLINIEGYLIELVCNVESMDELNLVAELLVSENALRHSAQELICSRIP
Ga0170834_1022405072	3300031057	Forest Soil	MDVQTDERLLRNIEGYLIELVCSVKSMDEVNLVAAALVSVQDALRDLAQEPICSRIQS
Ga0170834_1107059691	3300031057	Forest Soil	MEVQTDERLLINIESYLIELLCNAQSMDEVNLVAELLVSVQNALRHLVQEPIC
Ga0170834_1127563644	3300031057	Forest Soil	MDIQTDARFLRNIEGYLIELICSVKSIDEVSTLAEVLVLVQDTLRELEQEPRFAA
Ga0170834_1130055851	3300031057	Forest Soil	MDVQTDERLLINIEGYLIELVCNVESMDELNLVAEALVSVQDALRHLAQEPICSRIHEGNYSWL
Ga0170822_145316831	3300031122	Forest Soil	MDVQTDERLLRNIEGCLIELVCNVTSMDEVNLLAEVLVSVQDALRDMPQKPRFAA
Ga0170822_162431521	3300031122	Forest Soil	MDVQCDEWLLRDIEGYLIELVCNVEGSDEASLIAEVLVSVQDALRDLARKPRFAA
Ga0170823_131278343	3300031128	Forest Soil	MDIQTDARFLRNIEGYLIELICSVESIDEVSTLAEVLVLVQDTLRELEQEPRFAA
Ga0170824_1147083302	3300031231	Forest Soil	MDVQTDERLLRDIEGYLIELVCNVESMDELNLVAEALVSVQGALRHLAQEPVCSRIQ
Ga0170824_1189000462	3300031231	Forest Soil	MDLPTDERLLRNIEGYLTELVLNVESIDEVSLVADILVSVQAALRDLSQKPRSSLRTN
Ga0170824_1199778221	3300031231	Forest Soil	TDERLLINIEGYLIELVCNVESMDELNLVAEALVSVQDALRHLAQEPICSRIHEGNYSWL
Ga0170818_1039348441	3300031474	Forest Soil	MDVQTDERLLRNIEGYLIELVCNVKSMDEVNLVAAALVSVQDALRGLGR
Ga0310686_1018994973	3300031708	Soil	MDVQTDERLLRNIEGYLMELVCNVESIDQVNLLADVLVSVQDALRDLTQKPRSAA
Ga0310686_1081181193	3300031708	Soil	MDVQTDERLLRNIEGYLMELVCNVESTDGVSLLADVLVSVQTLSGT
Ga0310686_1125742693	3300031708	Soil	VDARTDERLLRNFEGYLMELVCIVESIDEVSLIADVLVSVQTALRDLGQKPQSA
Ga0310686_1129675062	3300031708	Soil	MDVQTDERLLRNFEGYVMELVCNVESIDQVNLLADVLVSVQDAHRDLAQKPRFVA
Ga0310686_1138487391	3300031708	Soil	MDVQTDERLLKNIEGYLVQLVSRVESLSIDEVSLIADVLASVQDALRYLAQEPRSAA
Ga0310686_11436047016	3300031708	Soil	MDAQTDERFLRNIEGYLMELVCNVESIDQVSLIADVLVTVQAALLDLTQKPGSAA
Ga0310686_1166481541	3300031708	Soil	MYAQTDERLLRNVEGYLMQLVSRVESLSIDEVSLIAEVLASVQGALRYVAHEPRSVA
Ga0307476_101594483	3300031715	Hardwood Forest Soil	MDVQTDERLLRNIEGYLMELVCNVENIHEVNLVADVLVSVQDALRDLAQKPRFVA
Ga0307476_104331242	3300031715	Hardwood Forest Soil	MDVQTDARLLRNIEGYLIELVCSVKSMEEVNLLAEALVSVQDALRDLEQKPRFAARSNRECRRCREPL
Ga0307476_113613701	3300031715	Hardwood Forest Soil	MVVQTDERFLRNTEGYLTELVCHVESIDGVSLIADVLVSVQDTLRDLAL
Ga0307474_100986222	3300031718	Hardwood Forest Soil	MDIQTDARFLRNIEGYLIELICSVETIGEVNALAEVLVLVQDILRELEQEPRFAA
Ga0307474_101828292	3300031718	Hardwood Forest Soil	MDVRTDERLLRNIEGYLMELVCSAESIDGVSLIADVLVSIQDALRDLPQKPPSAT
Ga0307474_103570641	3300031718	Hardwood Forest Soil	VQTDERLLRNIEGYLMELVCNVENIHEVNLVADVLVSVQDALRDLAQKPRFVA
Ga0307474_106224932	3300031718	Hardwood Forest Soil	MDVQTDERLLRNIEGYLIELVCNVKSMDEVNLVAAALVSVQNALRDLAQEPICSRIQS
Ga0307474_110242933	3300031718	Hardwood Forest Soil	DMDSQTDERLLRNIEGYLIELICMVESMDEVNLVADVLVSVQDALRDLAQKPRFTWHE
Ga0307469_107932071	3300031720	Hardwood Forest Soil	VIAAQKEDDMDAQTDERLLRNIEGYLIELICIVESMDEVNLVADVLVSVQDALRDLAQKPRFTWHE
Ga0307477_100539261	3300031753	Hardwood Forest Soil	RNIEGYLIELICGVESMGEVNTLAEVLVLVQDTLRELEQEPRFVA
Ga0307475_100346612	3300031754	Hardwood Forest Soil	MDIQTDARSLRNIEGYLIELICGVESMGEVNTLAEVLVLVQDTLRELEQEPRFVA
Ga0307475_107076532	3300031754	Hardwood Forest Soil	MEVQTDKRLLRNIEGYVSELLCDTTSMDELNLLADVLVSVQDVLRDLDQKPRFAA
Ga0307475_112133551	3300031754	Hardwood Forest Soil	MDVQTDARFLRNIEGYLIELVCNVKSMEEVNLLAGALVSVQDALRDLEQKPRFAA
Ga0307473_103514031	3300031820	Hardwood Forest Soil	MDVQTDERLLINIEGYLIELVCNVESMDELNLVAEALVSVQGALRHLAQEPICSRIQEENYS
Ga0307478_102810192	3300031823	Hardwood Forest Soil	MDAQSEARFLRNVEGYLIELVCGAKSTDDLKLLAEVLVSVRDTLRDLDQEPRFVA
Ga0310916_109085551	3300031942	Soil	MTDERFLRNIEGYLIELVCSVESMDEVNLVAEVLVSVQDALRGLAQKPRFAA
Ga0307479_100165154	3300031962	Hardwood Forest Soil	MDLQTDARLLRNIEGYLIELICNVKSIEEVNALAEVLVFVQDNLRELEQEPRFAA
Ga0307479_100515721	3300031962	Hardwood Forest Soil	KLLRNLEGYLIELVCCVKSTDEVNLVAEALGSVQEALKELGQKTI
Ga0307479_106485093	3300031962	Hardwood Forest Soil	MEVQTDKRLLRNMEGYVSELLCDTKSMDELNLLADVLVSVQDALRDLDQKPRFAA
Ga0307479_107092742	3300031962	Hardwood Forest Soil	VIAAQKEDDMDAQTDERLLRNIEGYLIELICMVESMDEVNLVADVLVSVQDALRDLAQKPRFTWHE
Ga0307479_107581762	3300031962	Hardwood Forest Soil	MDVQTDERLLRKIEGYVSELLCDTKSMGELNLLAEVLVSVQDALRDLDQTPRFAA
Ga0307479_109222743	3300031962	Hardwood Forest Soil	MDVQTDERLLRNIEGYLIELVCIVESIDDVSLIAEVLVSVQDALRDLAQKATICSLIQS
Ga0307479_114293991	3300031962	Hardwood Forest Soil	MDVQTDERLLRNIEGYLMELVCNVESIDQVNLVADVLVSVQDALRDLAQKPRFVA
Ga0307479_114383642	3300031962	Hardwood Forest Soil	EDDMDVQTDARLLRNIEGYLIELVCNVKSMEEVNLLAEALVSVQDALRDLEQKPRFAA
Ga0307479_118399081	3300031962	Hardwood Forest Soil	MEVQTDKRLLRNIEGYVSELLCDTTSMDELNLLADVLVSVQDALRDLDQKPRFAA
Ga0307471_1002486924	3300032180	Hardwood Forest Soil	MEVQTDKRLLRNIEGYVSELLCDTKSMDELNLLADVLVLVQDALRDLDQKPRFAA
Ga0307472_1004682562	3300032205	Hardwood Forest Soil	MDVQTDERLLINIEGYLIELVCNVESMDELNLVAEALVSVQGALRHLAQEPICSRIQ
Ga0307472_1021223892	3300032205	Hardwood Forest Soil	MDVQTDERHLRNIEGYLIELVCIVESMEEVNLVADVLVSVQDAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F053592

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences