Metagenome / Metatranscriptome Family F053403

Basic Information
Family ID	F053403
Family Type	Metagenome / Metatranscriptome
Number of Sequences	141
Average Sequence Length	44 residues
Representative Sequence	LIINAMQLLQAEEMITVAVVLFAFAALANALLLWIEHRLHRRV
Number of Associated Samples	122
Number of Associated Scaffolds	141

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.71 %
% of genes near scaffold ends (potentially truncated)	98.58 %
% of genes from short scaffolds (< 2000 bps)	88.65 %
Associated GOLD sequencing projects	114
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Most Common Taxonomy
Group	Bacteria (89.362 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.950 % of family members)
Environment Ontology (ENVO)	Unclassified (26.950 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.028 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.75% β-sheet: 0.00% Coil/Unstructured: 42.25%
Feature Viewer

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Pfam ID	Name	% Frequency in 141 Family Scaffolds
PF00903	Glyoxalase	19.15
PF05014	Nuc_deoxyrib_tr	8.51
PF02611	CDH	5.67
PF01979	Amidohydro_1	4.26
PF03401	TctC	3.55
PF00128	Alpha-amylase	3.55
PF12681	Glyoxalase_2	3.55
PF14759	Reductase_C	3.55
PF01977	UbiD	2.84
PF11941	DUF3459	2.13
PF03992	ABM	2.13
PF13356	Arm-DNA-bind_3	1.42
PF13545	HTH_Crp_2	1.42
PF07883	Cupin_2	1.42
PF03466	LysR_substrate	0.71
PF13187	Fer4_9	0.71
PF01381	HTH_3	0.71
PF00589	Phage_integrase	0.71
PF06724	DUF1206	0.71
PF13518	HTH_28	0.71
PF00027	cNMP_binding	0.71
PF09084	NMT1	0.71
PF00892	EamA	0.71
PF00571	CBS	0.71
PF02775	TPP_enzyme_C	0.71
PF00682	HMGL-like	0.71
PF01145	Band_7	0.71
PF03724	META	0.71
PF02624	YcaO	0.71

COG ID	Name	Functional Category	% Frequency in 141 Family Scaffolds
COG3613	Nucleoside 2-deoxyribosyltransferase	Nucleotide transport and metabolism [F]	8.51
COG2134	CDP-diacylglycerol pyrophosphatase	Lipid transport and metabolism [I]	5.67
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	3.55
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	3.55
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	3.55
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.55
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	3.55
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	2.84
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.71
COG1944	Ribosomal protein S12 methylthiotransferase accessory factor YcaO	Translation, ribosomal structure and biogenesis [J]	0.71
COG3187	Heat shock protein HslJ	Posttranslational modification, protein turnover, chaperones [O]	0.71
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.36 %
Unclassified	root	N/A	10.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.36 %
Unclassified	root	N/A	10.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.36 %
Unclassified	root	N/A	10.64 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	79.43 %
Unclassified	root	N/A	10.64 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	69.50 %
Unclassified	root	N/A	10.64 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.42 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.02 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	17.02 %
Unclassified	root	N/A	10.64 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.55 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	1.42 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.02 %
Unclassified	root	N/A	10.64 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.13 %
Tepidamorphaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae	1.42 %
Candidatus Competibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae	1.42 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	1.42 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.42 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.71 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.71 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.71 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.02 %
Unclassified	root	N/A	10.64 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.13 %
Lutibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	1.42 %
Candidatus Contendobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter	1.42 %
Acetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter	1.42 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	0.71 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.71 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.71 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.71 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.02 %
Unclassified	root	N/A	10.64 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.13 %
Candidatus Contendobacter odensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis	1.42 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → environmental samples	1.42 %
Lutibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	1.42 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	0.71 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.71 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.71 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.71 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.02 %
Unclassified	root	N/A	10.64 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.13 %
Acetobacter sp. CAG:267	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → environmental samples → Acetobacter sp. CAG:267	1.42 %
Candidatus Contendobacter odensis Run_B_J11	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis → Candidatus Contendobacter odensis Run_B_J11	1.42 %
Lutibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	1.42 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	0.71 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.71 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.71 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.71 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1024593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	949	Open in IMG/M
3300000789\|JGI1027J11758_12079342	Not Available	539	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1006897	All Organisms → cellular organisms → Bacteria → Proteobacteria	1610	Open in IMG/M
3300002245\|JGIcombinedJ26739_100888089	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300004082\|Ga0062384_100512165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	797	Open in IMG/M
3300004268\|Ga0066398_10013718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1248	Open in IMG/M
3300004268\|Ga0066398_10224266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	505	Open in IMG/M
3300004463\|Ga0063356_105162067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300005187\|Ga0066675_10014411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4285	Open in IMG/M
3300005332\|Ga0066388_102796965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	891	Open in IMG/M
3300005332\|Ga0066388_104572412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300005355\|Ga0070671_100972992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	743	Open in IMG/M
3300005365\|Ga0070688_100546897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → environmental samples → Acetobacter sp. CAG:267	880	Open in IMG/M
3300005436\|Ga0070713_101481268	Not Available	658	Open in IMG/M
3300005447\|Ga0066689_10041616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2417	Open in IMG/M
3300005529\|Ga0070741_10966228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis → Candidatus Contendobacter odensis Run_B_J11	733	Open in IMG/M
3300005576\|Ga0066708_10598615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	707	Open in IMG/M
3300005602\|Ga0070762_11067137	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300005607\|Ga0070740_10163312	All Organisms → cellular organisms → Bacteria → Proteobacteria	955	Open in IMG/M
3300005607\|Ga0070740_10232654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis → Candidatus Contendobacter odensis Run_B_J11	759	Open in IMG/M
3300005713\|Ga0066905_100994503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	739	Open in IMG/M
3300005764\|Ga0066903_101908388	All Organisms → cellular organisms → Bacteria → Proteobacteria	1138	Open in IMG/M
3300005836\|Ga0074470_10805043	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300006038\|Ga0075365_10122183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	1797	Open in IMG/M
3300006176\|Ga0070765_101194202	Not Available	718	Open in IMG/M
3300006176\|Ga0070765_101700452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	593	Open in IMG/M
3300006606\|Ga0074062_12515640	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300006853\|Ga0075420_101885269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	511	Open in IMG/M
3300006904\|Ga0075424_100333137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1616	Open in IMG/M
3300009162\|Ga0075423_10033928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	5189	Open in IMG/M
3300009176\|Ga0105242_11435111	Not Available	719	Open in IMG/M
3300009645\|Ga0116106_1007846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4074	Open in IMG/M
3300009683\|Ga0116224_10040559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2281	Open in IMG/M
3300009698\|Ga0116216_10440418	Not Available	789	Open in IMG/M
3300010043\|Ga0126380_10760908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	787	Open in IMG/M
3300010043\|Ga0126380_11196663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	655	Open in IMG/M
3300010043\|Ga0126380_11787990	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300010046\|Ga0126384_11380010	Not Available	656	Open in IMG/M
3300010046\|Ga0126384_11555610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300010048\|Ga0126373_11629789	Not Available	710	Open in IMG/M
3300010301\|Ga0134070_10006356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3629	Open in IMG/M
3300010336\|Ga0134071_10596543	Not Available	577	Open in IMG/M
3300010358\|Ga0126370_10164229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1636	Open in IMG/M
3300010358\|Ga0126370_12215046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
3300010359\|Ga0126376_10462832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1162	Open in IMG/M
3300010359\|Ga0126376_11825347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	646	Open in IMG/M
3300010361\|Ga0126378_12364592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300010366\|Ga0126379_10882438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	996	Open in IMG/M
3300010379\|Ga0136449_100804498	All Organisms → cellular organisms → Bacteria	1552	Open in IMG/M
3300010379\|Ga0136449_102399085	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300010399\|Ga0134127_13445371	Not Available	518	Open in IMG/M
3300011119\|Ga0105246_10526590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1008	Open in IMG/M
3300012199\|Ga0137383_10683647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	750	Open in IMG/M
3300012202\|Ga0137363_11184097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	650	Open in IMG/M
3300012208\|Ga0137376_10797575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	813	Open in IMG/M
3300012929\|Ga0137404_10034925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3751	Open in IMG/M
3300012944\|Ga0137410_11955745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	520	Open in IMG/M
3300012948\|Ga0126375_11827622	All Organisms → cellular organisms → Bacteria → Proteobacteria	531	Open in IMG/M
3300012985\|Ga0164308_12274068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300014296\|Ga0075344_1119919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300014489\|Ga0182018_10087510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1840	Open in IMG/M
3300014501\|Ga0182024_11347137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	825	Open in IMG/M
3300015200\|Ga0173480_10500819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	727	Open in IMG/M
3300015200\|Ga0173480_11252266	All Organisms → cellular organisms → Bacteria → Proteobacteria	504	Open in IMG/M
3300015372\|Ga0132256_100387830	Not Available	1497	Open in IMG/M
3300015374\|Ga0132255_103162912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → environmental samples → Acetobacter sp. CAG:267	702	Open in IMG/M
3300016270\|Ga0182036_10808156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	764	Open in IMG/M
3300016371\|Ga0182034_10275757	Not Available	1337	Open in IMG/M
3300016371\|Ga0182034_10315058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1259	Open in IMG/M
3300016404\|Ga0182037_11682305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	565	Open in IMG/M
3300016422\|Ga0182039_10830261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	822	Open in IMG/M
3300017959\|Ga0187779_11021498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	574	Open in IMG/M
3300017970\|Ga0187783_10368687	Not Available	1045	Open in IMG/M
3300017973\|Ga0187780_10383097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	996	Open in IMG/M
3300017973\|Ga0187780_11031183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	600	Open in IMG/M
3300017993\|Ga0187823_10162408	Not Available	712	Open in IMG/M
3300018085\|Ga0187772_10927735	All Organisms → cellular organisms → Bacteria → Proteobacteria	633	Open in IMG/M
3300018089\|Ga0187774_10373287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	858	Open in IMG/M
3300019786\|Ga0182025_1103874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	721	Open in IMG/M
3300020582\|Ga0210395_11271136	Not Available	539	Open in IMG/M
3300021168\|Ga0210406_10128046	All Organisms → cellular organisms → Bacteria → Proteobacteria	2142	Open in IMG/M
3300021168\|Ga0210406_10525935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	932	Open in IMG/M
3300021171\|Ga0210405_10112222	All Organisms → cellular organisms → Bacteria	2152	Open in IMG/M
3300021404\|Ga0210389_10691723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	799	Open in IMG/M
3300021432\|Ga0210384_10303570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	1437	Open in IMG/M
3300021475\|Ga0210392_11055210	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300021477\|Ga0210398_10499288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	991	Open in IMG/M
3300021560\|Ga0126371_11695793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	756	Open in IMG/M
3300024288\|Ga0179589_10619875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M
3300025931\|Ga0207644_11342745	Not Available	601	Open in IMG/M
3300025936\|Ga0207670_11595081	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300027706\|Ga0209581_1261948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300027855\|Ga0209693_10030433	All Organisms → cellular organisms → Bacteria	2629	Open in IMG/M
3300027874\|Ga0209465_10590785	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300027884\|Ga0209275_10750929	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300027911\|Ga0209698_10058434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3343	Open in IMG/M
3300028881\|Ga0307277_10559771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300028906\|Ga0308309_11127804	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300030706\|Ga0310039_10311966	All Organisms → cellular organisms → Bacteria → Proteobacteria	593	Open in IMG/M
3300031249\|Ga0265339_10102821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1485	Open in IMG/M
3300031545\|Ga0318541_10466556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	706	Open in IMG/M
3300031549\|Ga0318571_10122319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	874	Open in IMG/M
3300031561\|Ga0318528_10350582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	792	Open in IMG/M
3300031564\|Ga0318573_10734006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	531	Open in IMG/M
3300031640\|Ga0318555_10376367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	769	Open in IMG/M
3300031668\|Ga0318542_10530786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	612	Open in IMG/M
3300031681\|Ga0318572_10152896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1333	Open in IMG/M
3300031723\|Ga0318493_10792407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300031726\|Ga0302321_100688266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1146	Open in IMG/M
3300031748\|Ga0318492_10084337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1541	Open in IMG/M
3300031770\|Ga0318521_10781166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300031792\|Ga0318529_10460797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300031793\|Ga0318548_10111504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1317	Open in IMG/M
3300031795\|Ga0318557_10580213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300031796\|Ga0318576_10187982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	970	Open in IMG/M
3300031796\|Ga0318576_10412184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M
3300031799\|Ga0318565_10403562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300031832\|Ga0318499_10017660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	2440	Open in IMG/M
3300031833\|Ga0310917_10105521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1819	Open in IMG/M
3300031879\|Ga0306919_10954111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	656	Open in IMG/M
3300031890\|Ga0306925_10027704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	5739	Open in IMG/M
3300031897\|Ga0318520_10736183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300031912\|Ga0306921_10260605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2031	Open in IMG/M
3300031946\|Ga0310910_11523244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300031981\|Ga0318531_10037074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2027	Open in IMG/M
3300032039\|Ga0318559_10111925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1217	Open in IMG/M
3300032041\|Ga0318549_10480248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300032041\|Ga0318549_10480269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	559	Open in IMG/M
3300032054\|Ga0318570_10197987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	907	Open in IMG/M
3300032054\|Ga0318570_10506987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300032059\|Ga0318533_10920263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	641	Open in IMG/M
3300032060\|Ga0318505_10369698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	677	Open in IMG/M
3300032064\|Ga0318510_10200891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	805	Open in IMG/M
3300032090\|Ga0318518_10687627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300032160\|Ga0311301_10279419	All Organisms → cellular organisms → Bacteria	2705	Open in IMG/M
3300032160\|Ga0311301_11670842	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300032205\|Ga0307472_101666719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	629	Open in IMG/M
3300032805\|Ga0335078_11095230	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300032805\|Ga0335078_11661204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	703	Open in IMG/M
3300032828\|Ga0335080_10555395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1213	Open in IMG/M
3300033134\|Ga0335073_12100907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	512	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.49%
Host-Associated	Host-Associated	8.51%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.94%
Plants	Host-Associated → Plants	8.51%
Aquatic	Environmental → Aquatic	3.55%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.38%
Freshwater	Environmental → Aquatic → Freshwater	2.13%
Sediment	Environmental → Aquatic → Sediment	1.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.42%
Peat	Environmental → Terrestrial → Peat	0.71%
Roots	Host-Associated → Plants → Roots	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.25%
Loam	Environmental → Terrestrial → Soil → Loam	12.06%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.55%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.84%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.71%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.71%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.75%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.84%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.71%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.71%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.71%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.67%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.26%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.26%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.84%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.84%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.84%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.13%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.42%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.42%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.42%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.71%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.71%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.71%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.71%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.71%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.71%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.71%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.71%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.71%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.71%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.71%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005607	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014296	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D1	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F053403

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10245931	3300000580	Forest Soil	SLIINAMQLLQAEEMITVAVVLFAFAALANALLLWIEHRLHRRV*
JGI1027J11758_120793421	3300000789	Soil	IINAMQLLQGEELMTVALVLFLFAAFANALLLWIEHRLPRVA*
AP72_2010_repI_A100DRAFT_10068974	3300000837	Forest Soil	LAEMFAAKHGLGSLIINAMQLLQAEEMITIAVVLFVFAALANAMLLWIEHQLHRRV*
JGIcombinedJ26739_1008880891	3300002245	Forest Soil	QSEDMVTVAIILFVFAAIANALLLWIEHRLHRRV*
Ga0062384_1005121652	3300004082	Bog Forest Soil	LGLGAMIMNAMSLAQSEEMMTVAIVLFTFAAIANGILLFIEHRLHRRV*
Ga0066398_100137183	3300004268	Tropical Forest Soil	LIINAMQLMQAEEMVTIAVVLFAFAALANALLLWIEHQLHRRV*
Ga0066398_102242661	3300004268	Tropical Forest Soil	LIINAMQLLQAEEMITIAVVLFVFAALANALLLWIEHRLHRRV*
Ga0063356_1051620671	3300004463	Arabidopsis Thaliana Rhizosphere	INAMQLMQAEEMVTVAVVLFGFAAFANAMLLWIEHQLHPRV*
Ga0066675_100144111	3300005187	Soil	GLGSLIINAMQLMQAEEMLTVAVVLFTFAALANALLLWIEHRLHRRV*
Ga0066388_1027969652	3300005332	Tropical Forest Soil	AAKHGLGSLIINAMQLLQAEEMITIAVVLFVFAALANALLLWIEHQLHRRV*
Ga0066388_1045724121	3300005332	Tropical Forest Soil	EMFAAKHGLGSLIINAMQLLQAEEMITIAVVLFVFAALANAMLLWIEHQLHRRV*
Ga0070671_1009729921	3300005355	Switchgrass Rhizosphere	AKHGLGFLIINAMQMLQGEEMITVAVVLFVFAALANALLLWIEHRLHRGV*
Ga0070688_1005468974	3300005365	Switchgrass Rhizosphere	NAMQLLQNEEMITVALMLFLFAAVANALLLWLEHTLHRRG*
Ga0070713_1014812682	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	GSLIINAMQLLQGEEMVSVALVLFAFAALANALLLFIEHRLHRRV*
Ga0066689_100416161	3300005447	Soil	LGFLIINAMQLLQTEEMVAVAVVLFAFAALANALLLWIEHRLHRRV*
Ga0070741_109662281	3300005529	Surface Soil	YGLGSLIINAMQLLQPEEMIAVTIVLFLFAVLANALLLFMEHKLHRRA*
Ga0066708_105986151	3300005576	Soil	QGLGSLIINAMQLLQAEEMVAVAVVLFAFAALANALLLWIEHRLHRRV*
Ga0070762_110671371	3300005602	Soil	AQSEDMVTVAIILFVFAAIANTLLLWIEHRLHRKV*
Ga0070740_101633121	3300005607	Surface Soil	AEMFAAKAGLGFLIINAMQLLQNREMVSVAIVLFGFAAAANALLLWIEHRLQRRA*
Ga0070740_102326541	3300005607	Surface Soil	FASKYGLGSLIINAMQLLQPEEMIAVTIVLFLFAVLANALLLFMEHKLHRRA*
Ga0066905_1009945032	3300005713	Tropical Forest Soil	NAMQLMQAEEMVTIAVVLFAFAALANAMLLWIEHQLHPRV*
Ga0066903_1019083881	3300005764	Tropical Forest Soil	LGFLIMNAMSLLQNEEMIAVAVLLFVFAALANALLLWAEHHLHPRV*
Ga0074470_108050432	3300005836	Sediment (Intertidal)	GFLIINAMSLAQSEEMLTVAIVLFTFAALANTFLLWIENRLHRRI*
Ga0075365_101221832	3300006038	Populus Endosphere	INAMQLMQAEEMLTVAVVLFAFAALANALLLWIEHRLHHRV*
Ga0070765_1011942021	3300006176	Soil	KLGLGSMIMNDMSLAQSEDMVTVAIILFVFAAIANTLLLWIEHRLHRKV*
Ga0070765_1017004522	3300006176	Soil	LAQSEDMVTVAIILFVFAAIANALLLWIEHRLHRRV*
Ga0074062_125156402	3300006606	Soil	LGFLIINAMQLMQAEEMVTIAVVLFVFAALANAMLLWIEHQLHPRV*
Ga0075420_1018852692	3300006853	Populus Rhizosphere	ISTVQPEEMLSVAIVLFSFAALANALLLWSEHRLYHRG*
Ga0075424_1003331373	3300006904	Populus Rhizosphere	AKHGLGFLIINAMQLMQAEEMVTVAVVLFGFAALANAMLLWIEHQLHPQV*
Ga0075423_100339281	3300009162	Populus Rhizosphere	EMFAAKHGLGFLIINAMQLMQAEEMVTIAVVLFGFAAFANAMLLWIEHQLHPRV*
Ga0105242_114351112	3300009176	Miscanthus Rhizosphere	LIINAMQMLQAEEMITVAVVLFVFAALANALLLWIEHRLHRRV*
Ga0116106_10078465	3300009645	Peatland	ASKLGLGSMIMSDMSLAQSEDMVTVAIILFVFAACANALLLWIEHRLHRKV*
Ga0116224_100405591	3300009683	Peatlands Soil	SLAQSEEMMTVAIVLFTFAAIANGVLLWIEHRLHRRV*
Ga0116216_104404182	3300009698	Peatlands Soil	SMIMSDMSLAQSEDMVTVAIILFVFAACANALLLWIEHRLHRKV*
Ga0126380_107609081	3300010043	Tropical Forest Soil	INAMQLMQAEEMVTVAVVLFAFAALANAILLWIEHQLHPRV*
Ga0126380_111966631	3300010043	Tropical Forest Soil	KHGLGSLIINAMQLLQAEEMITIAVVLFVFAALANALLLWIEHQLHRRV*
Ga0126380_117879901	3300010043	Tropical Forest Soil	IINAMQLLQAEEMITIAVVLFVFAALANAMLLWIEHQLHRRV*
Ga0126384_113800102	3300010046	Tropical Forest Soil	LMQAEEMLSVAVVLFAFAALANALLLWIEHRLHRRI*
Ga0126384_115556102	3300010046	Tropical Forest Soil	FLIINAMQLMQAEEMVTVAVVLFAFAALANAILLWIEHQLHPRV*
Ga0126373_116297892	3300010048	Tropical Forest Soil	GSLIINAMQLMQAEEMLSVAVVLFAFAALANALLLWIEHRLHRRI*
Ga0134070_100063563	3300010301	Grasslands Soil	KQGLGFLIINAMQLLQAEEMVAVAVVLFAFAALANALLLWIEHRLHRRV*
Ga0134071_105965431	3300010336	Grasslands Soil	LLQAEEMMTVAVVLFAFAALANALLLSIEHRLHRRV*
Ga0126370_101642291	3300010358	Tropical Forest Soil	NAMQLMQPEEMVTTAVVLFAFAALANALLLWIEHQLHRRV*
Ga0126370_122150462	3300010358	Tropical Forest Soil	NAMQLMQAEEMVTIAVVLFAFAALANALLLWIEHQLHPRV*
Ga0126376_104628322	3300010359	Tropical Forest Soil	MFAAKHGLGFLIINAMQLMQAEEMVTIAVVLFAFAALANALLLWIEHQLHRRV*
Ga0126376_118253472	3300010359	Tropical Forest Soil	FAAKHGLGFLIINAMQLMQAEEMVTVAVVLFAFAALANAILLWIEHQLHPRV*
Ga0126378_123645922	3300010361	Tropical Forest Soil	QAEEMITIAVVLFAFAALANALLLWIEHQLHRRV*
Ga0126379_108824382	3300010366	Tropical Forest Soil	AKHGLGFLIINAMQLLQTEEMLTVAVVLFVFAAVANALLLWFEHQLHRRT*
Ga0136449_1008044985	3300010379	Peatlands Soil	LGSMIMSDMSLAQSEDMVTVAIILFVFAAIANALLLWIEHRLHRRV*
Ga0136449_1023990851	3300010379	Peatlands Soil	LGLGSMIMSDMSLAQSEDMVTVAIILFVFAACANALLLWIEHRLHRKV*
Ga0134127_134453712	3300010399	Terrestrial Soil	GLGFLIINAMQMLQGEEMITVAVVLFVFAALANALLLWIEHRLHRRV*
Ga0105246_105265903	3300011119	Miscanthus Rhizosphere	VQNEEMITVAVVLFAFAAVANALLLWIDHRLFQRT*
Ga0137383_106836472	3300012199	Vadose Zone Soil	INAMQLMQAEEMVTIAVVLFGFAAFANAMLLWIEHQLHPRV*
Ga0137363_111840971	3300012202	Vadose Zone Soil	INAMQLMQAEEMITVAVVLFAFAALANALLLWIEHQLHRRV*
Ga0137376_107975752	3300012208	Vadose Zone Soil	IINAMQLMQAEEMVTIAVVLFAFAALANAMLLWIEHQLHPRV*
Ga0137404_100349251	3300012929	Vadose Zone Soil	AMQLLQAEEMMTVAVVLFAFAALANALLLWIEHRLHRRV*
Ga0137410_119557452	3300012944	Vadose Zone Soil	LIINAQSLLQTEEMLSVAIVLFVSAVLANSLLLWMEHRLHRRV*
Ga0126375_118276221	3300012948	Tropical Forest Soil	AKHGLGSLIINAMQLLQAEEMITIAVVLFVFAALANALLLWIEHQLHRRA*
Ga0164308_122740681	3300012985	Soil	LAEMFAAKHGLGFLIINAMQMLQAEEMITVAVVLFVFAALANALLLWIEHRLHGGV*
Ga0075344_11199193	3300014296	Natural And Restored Wetlands	FLIINAMQLLQTEEMLTVAVVLFLFAAAANGLLLWMEHHLHRRA*
Ga0182018_100875101	3300014489	Palsa	MFASKLGLGSMIMSDMSLAQSEDMVTVAIVLFAFAAIANALLLWIEHRLNGKV*
Ga0182024_113471373	3300014501	Permafrost	SMIMNDMSLAQSEDMVTVAIILFVFAAIANTLLLWIEHRLHRRV*
Ga0173480_105008191	3300015200	Soil	LGALIINAMQLLQNEEMVAVAIVLFLFAALANAVLLWIEHRLHRRV*
Ga0173480_112522661	3300015200	Soil	NAMALLQTEEMITVAIVLFVFAAAANALLLWMERQMHRRV*
Ga0132256_1003878302	3300015372	Arabidopsis Rhizosphere	INAMQMLQGEEMITVAVVLFVFAALANALLLWIEHRLHRGV*
Ga0132255_1031629121	3300015374	Arabidopsis Rhizosphere	AMQLLQAEEMVTVAVVLFVFAAAANALLLWMEHSLHRRT*
Ga0182036_108081561	3300016270	Soil	LLQGEEMITVAVVLFVFAALANAFLLWIEHRLHRGV
Ga0182034_102757572	3300016371	Soil	AKHGLGFLIINAMQLLQAEEMVTVALVLFVFAIAANALLLVIEHRLHRRV
Ga0182034_103150582	3300016371	Soil	NAMSLLQNEEMIAVAVLLFVFAALANALLLWAEHHLHPRV
Ga0182037_116823052	3300016404	Soil	AEMFAAKHGLGFLIINAMQLMQAEEMVTIAVVLFAFAALANALLLWVEHQLHRRV
Ga0182039_108302612	3300016422	Soil	LLQTQEMIAVAVFLFTFAALANALLLWLEHRLHRRV
Ga0187779_110214981	3300017959	Tropical Peatland	EMFASEHGLGSLIINAMQLLQNEEMITVAVVLFLFAALANSLLLWIEHHLHRRI
Ga0187783_103686872	3300017970	Tropical Peatland	LLQGEEMMTVTIVLFAFAAIANAVLLWIEHRLFEP
Ga0187780_103830972	3300017973	Tropical Peatland	AEMFASEHGLGSLIINAMQLLQNEEMITVAVVLFLFAALANSLLLWIEHHLHRRI
Ga0187780_110311832	3300017973	Tropical Peatland	SKQGLGFLIMNAMTLLQTEEMIAIAVLLFVFAAFANASLLWIEHRLYRRCDHEDV
Ga0187823_101624082	3300017993	Freshwater Sediment	GLGFLIINAMSLAQSEEMLAVAIVLFVFAALANAVLLSMEHRLHRRA
Ga0187772_109277351	3300018085	Tropical Peatland	TDMQLLQGEEMMTVTIVLFAFAAIANAVLLWIEHRLHRRV
Ga0187774_103732871	3300018089	Tropical Peatland	LIINAMQLLQNEEMITVAVVLFLFAALANSLLLWIEHHLHRRI
Ga0182025_11038741	3300019786	Permafrost	LIINAMTLLQTKEMISIAVVLFAFAAVANAILLWIEHRLHRRV
Ga0210395_112711362	3300020582	Soil	LGLGSMIMSDMSLAQSEDMVTVAIILFVFAACANALLLWIEHRLHRKI
Ga0210406_101280464	3300021168	Soil	LMQAEEMVTIAVVLFAFAALANAMLLWIEHRFHPRV
Ga0210406_105259351	3300021168	Soil	LLQGEEMLSVAVVLFAFAAVANALLLWIEHQLHRRV
Ga0210405_101122221	3300021171	Soil	LAQSEDMVTVAIILFVFAAIANALLLWIEHRLDRRV
Ga0210389_106917233	3300021404	Soil	FASKLGLGSMIMNDMSLAQSEDMVTVAIILFVFAAIANTLLLWIEHRLHRKV
Ga0210384_103035702	3300021432	Soil	SLIINAMQLMQAEEMLSVAVVLFAFAALANALLLWIEQRLHRRA
Ga0210392_110552102	3300021475	Soil	MSLAQSEDMVTVAIVLFVFAAIANALLLWVEHRLHRKV
Ga0210398_104992881	3300021477	Soil	GLGSMIMSDMSLAQSEDMVTVAIILFVFAAIANALLLWIEHRLHRRV
Ga0126371_116957931	3300021560	Tropical Forest Soil	GFLIINAMQLMQAEEMITIAVVLFAFAALANALLLWIEHQLHRRV
Ga0179589_106198751	3300024288	Vadose Zone Soil	INAMQLLQAEEMIAVAVVLFAFAALANALLLWIEHRLHRRV
Ga0207644_113427452	3300025931	Switchgrass Rhizosphere	HGLGFLIINAMQMLQGEEMITVAVVLFVFAALANALLLWIEHRLHRRV
Ga0207670_115950811	3300025936	Switchgrass Rhizosphere	AKHGLGFLIINAMQMLQGEEMITVAVVLFVFAALANALLLWIEHRLHRGV
Ga0209581_12619481	3300027706	Surface Soil	AEMFAAKAGLGFLIINAMQLLQNREMVSVAIVLFGFAAAANALLLWIEHRLQRRA
Ga0209693_100304331	3300027855	Soil	LGSMIMSDMSLAQSEDMVTVAIILFVFAAIANALLLWIEHRLHRRV
Ga0209465_105907852	3300027874	Tropical Forest Soil	MADRDYTAEEMMTVAVLLFAFAALANALLLWMEHRLHRRV
Ga0209275_107509292	3300027884	Soil	LGLGSMIMNDMSLAQSEDMVTVAIVLFVFAAIANALLLWVEHRLHRKV
Ga0209698_100584345	3300027911	Watersheds	SKLGLGSMIMNDMSLAQSEDMVTVAIILFVFAAIANALLLWIEHRLHRRV
Ga0307277_105597711	3300028881	Soil	LIMNAMQLLQAEEMITVAVVLFAFAALANALLLWIEHQLHGGA
Ga0308309_111278042	3300028906	Soil	TDMQLLQGEDMMTVTIVLFGFAAIANAALLWIEHRLHRRV
Ga0310039_103119661	3300030706	Peatlands Soil	DMSLAQSEDMVTVAIILFVFAACANALLLWIEHRLHRKV
Ga0265339_101028213	3300031249	Rhizosphere	LIINAMQMLQGQEMMAVTVVLFVFAVLANAGLLWMEHKLQHRA
Ga0318541_104665562	3300031545	Soil	MNAMSLLQNEEMIAVAVLLFVFAALANALLLWAEHYLHPRV
Ga0318571_101223191	3300031549	Soil	KHGLGFLIINAMQLMQAEEMVTVAVVLFAFAALANAILLWIEHQLHPRV
Ga0318528_103505821	3300031561	Soil	LIINAMQLLQAEEMITIAVVLFAFAALANALLLWIEHRLHRRV
Ga0318573_107340061	3300031564	Soil	NAMQLLQGEEMITVAVVLFVFAALANAFLLWIEHRLHRGV
Ga0318555_103763672	3300031640	Soil	AKHGLGFLIINAMQLMQAEEMVTIAVVLFAFAALANAMLLWIEHQLHPRV
Ga0318542_105307862	3300031668	Soil	AMQLLQAEEMITIAVVLFAFAALANALLLWIEHRLHRRV
Ga0318572_101528962	3300031681	Soil	INAMQLMQAEEMVTVAVVLFAFAALANAILLWIEHQLHPRV
Ga0318493_107924071	3300031723	Soil	YLLINAMQLLQGEEMMTVAIVLFGFAALANALMLAAEHRLHRRV
Ga0302321_1006882661	3300031726	Fen	IINAMQLLQAEEMITVALVLFAFAALANALLLWIEHQLHRRV
Ga0318492_100843371	3300031748	Soil	IINAMQLMQAEEMVTIAVVLFAFAALANAILLWIEHQLHPRV
Ga0318521_107811661	3300031770	Soil	FAAKHGLGFLIINAMQLMQAEEMVTVAVVLFAFAALANAILLWIEHQLHPRV
Ga0318529_104607972	3300031792	Soil	KHGLGFLIINAMQLMQAEEMVTVAVVLFAFAAFANAILLWIEHQLHPRV
Ga0318548_101115042	3300031793	Soil	GFLIINAMQLLQVEEMITVAVVLFVFAALANAFLLWIEHRLHRGV
Ga0318557_105802131	3300031795	Soil	GFLIINAMQLMQAEEMVTVAVVLFAFAALANAILLWIEHQLHPRV
Ga0318576_101879821	3300031796	Soil	HGLGFLIINAMQLLQGEEMITVAVVLFVFAALANAFLLWIEHRLHRGV
Ga0318576_104121842	3300031796	Soil	LGALIINAMQLMQAEEMVTIAVVLFAFAALANALLLWIEHRLHRRV
Ga0318565_104035622	3300031799	Soil	QLMQAEEMVTVAVVLFAFAALANAILLWIEHQLHPRV
Ga0318499_100176603	3300031832	Soil	INAMQLMQAEEMVTVAVVLFAFAAFANAILLWIEHQLHPRV
Ga0310917_101055213	3300031833	Soil	NAMTLLQTEEMIAIAVLLFVFAAFANASLLWIEHRLYRRV
Ga0306919_109541111	3300031879	Soil	MQAEEMVTVAVVLFAFAAFANAILLWIEHQLHPRV
Ga0306925_100277044	3300031890	Soil	MQLMQAEEMVTIAVVLFAFAALANAMLLWIEHQLHPRV
Ga0318520_107361831	3300031897	Soil	LIINAMQLLQAEEMITVAVVLFAFAALANALLLWIEHRLHRRV
Ga0306921_102606051	3300031912	Soil	LGFLIMNAMSLLQNEEMIAVAVLLFVFAALANALLLWAEHYLHPRV
Ga0310910_115232441	3300031946	Soil	FLIINAMLLMQAEEMVTVAVVLFAFAALANAILLWIEHQLHPRV
Ga0318531_100370743	3300031981	Soil	KHGLGFLIINAMQLLQGEEMITVAVVLFVFAALANAFLLWIEHRLHRGV
Ga0318559_101119251	3300032039	Soil	LIINAMQLMQAEEMVTVAVVLFAFAAFANAILLWIEHQLHPRV
Ga0318549_104802482	3300032041	Soil	LLQGEEMIGVAVLLFAFAALANALLLWFEHHLHRV
Ga0318549_104802692	3300032041	Soil	INAMQLMQAEEMVTIAVVLFAFAALANALLLWVEHQLHRRV
Ga0318570_101979872	3300032054	Soil	INAMQLMQAEEMVTIAVVLFAFAALANAMLLWIEHQLHPRV
Ga0318570_105069872	3300032054	Soil	LIINAMQLMQAEEMVTIAVVLFAFAALANALLLWIEHRLHRRV
Ga0318533_109202632	3300032059	Soil	AMQLMQAEEMVTIAVVLFAFAALANAMLLWIEHQLHPRV
Ga0318505_103696981	3300032060	Soil	AKHGLGFLIINAMQLMQAEEMVTVAVVLFAFAALANAILLWIEHQLHPRV
Ga0318510_102008911	3300032064	Soil	EMFAAKHGLGFLIINAMQLLQGEEMITVAVVLFVFAALANAFLLWIEHRLHRGV
Ga0318518_106876272	3300032090	Soil	GLGFLIINAMQLMQAEEMVTVAVVLFAFAALANAILLWIEHQLHPRV
Ga0311301_102794195	3300032160	Peatlands Soil	MIMSDMSLAQSEDMVTVAIILFVFAAIANALLLWIEHRLHRRV
Ga0311301_116708422	3300032160	Peatlands Soil	LGLGSMIMSDMSLAQSEDMVTVAIILFVFAACANALLLWIEHRLHRKV
Ga0307472_1016667192	3300032205	Hardwood Forest Soil	FLIINAMSLLQTEEMMTVAVLLFAFAALANALLLWMEHRLHRRV
Ga0335078_110952301	3300032805	Soil	LQGQEMMMVAIVLFAFAAIANGLLLWIEHRLHRRV
Ga0335078_116612041	3300032805	Soil	MNDMSLAQSEDMVTVAIILFVFAAIANALLLWIEHRLHRRV
Ga0335080_105553953	3300032828	Soil	LQGEEMMTIAIVLFGFAALANALMLAVEHRLHRRV
Ga0335073_121009072	3300033134	Soil	GLGFLIINAMTLLQTKEMISIAVVLFAFAAVANAILLWIEHRLHRRV

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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