Metagenome Family F053395

Basic Information
Family ID	F053395
Family Type	Metagenome
Number of Sequences	141
Average Sequence Length	50 residues
Representative Sequence	VKVPLHSTDDASRLAALLLRRILPVFSVVAPGQPGASPVSVPRGTFTTGS
Number of Associated Samples	115
Number of Associated Scaffolds	141

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	59.02 %
% of genes near scaffold ends (potentially truncated)	48.94 %
% of genes from short scaffolds (< 2000 bps)	76.60 %
Associated GOLD sequencing projects	106
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Most Common Taxonomy
Group	Bacteria (75.177 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (12.057 % of family members)
Environment Ontology (ENVO)	Unclassified (45.390 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (62.411 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.21% β-sheet: 0.00% Coil/Unstructured: 71.79%
Feature Viewer

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Pfam ID	Name	% Frequency in 141 Family Scaffolds
PF00579	tRNA-synt_1b	2.84
PF01145	Band_7	2.84
PF08811	DUF1800	2.84
PF00115	COX1	2.13
PF04166	PdxA	2.13
PF14748	P5CR_dimer	2.13
PF07394	DUF1501	2.13
PF01966	HD	1.42
PF10173	Mit_KHE1	1.42
PF13177	DNA_pol3_delta2	1.42
PF13570	PQQ_3	1.42
PF02616	SMC_ScpA	1.42
PF00072	Response_reg	1.42
PF13545	HTH_Crp_2	1.42
PF03551	PadR	1.42
PF13091	PLDc_2	0.71
PF05201	GlutR_N	0.71
PF13577	SnoaL_4	0.71
PF02687	FtsX	0.71
PF12276	DUF3617	0.71
PF01176	eIF-1a	0.71
PF13450	NAD_binding_8	0.71
PF00498	FHA	0.71
PF03869	Arc	0.71
PF01408	GFO_IDH_MocA	0.71
PF05147	LANC_like	0.71
PF02954	HTH_8	0.71
PF07705	CARDB	0.71
PF13620	CarboxypepD_reg	0.71
PF01738	DLH	0.71
PF01313	Bac_export_3	0.71
PF00702	Hydrolase	0.71
PF00092	VWA	0.71
PF00034	Cytochrom_C	0.71
PF02472	ExbD	0.71
PF02618	YceG	0.71
PF13435	Cytochrome_C554	0.71
PF13174	TPR_6	0.71
PF08308	PEGA	0.71
PF03692	CxxCxxCC	0.71
PF00133	tRNA-synt_1	0.71
PF01578	Cytochrom_C_asm	0.71
PF13551	HTH_29	0.71
PF04456	DUF503	0.71
PF07676	PD40	0.71
PF01709	Transcrip_reg	0.71
PF00202	Aminotran_3	0.71
PF13365	Trypsin_2	0.71
PF01135	PCMT	0.71
PF13594	Obsolete Pfam Family	0.71
PF13532	2OG-FeII_Oxy_2	0.71
PF00696	AA_kinase	0.71
PF13847	Methyltransf_31	0.71
PF00364	Biotin_lipoyl	0.71
PF12893	Lumazine_bd_2	0.71
PF08241	Methyltransf_11	0.71
PF00246	Peptidase_M14	0.71
PF07238	PilZ	0.71
PF12804	NTP_transf_3	0.71
PF06792	UPF0261	0.71
PF09586	YfhO	0.71
PF02646	RmuC	0.71
PF03626	COX4_pro	0.71
PF01436	NHL	0.71
PF14520	HHH_5	0.71
PF00583	Acetyltransf_1	0.71
PF16916	ZT_dimer	0.71
PF13517	FG-GAP_3	0.71
PF01061	ABC2_membrane	0.71
PF01258	zf-dskA_traR	0.71
PF02776	TPP_enzyme_N	0.71
PF12838	Fer4_7	0.71
PF00465	Fe-ADH	0.71
PF12704	MacB_PCD	0.71
PF02075	RuvC	0.71
PF00487	FA_desaturase	0.71
PF13505	OMP_b-brl	0.71
PF04962	KduI	0.71
PF00814	TsaD	0.71
PF02482	Ribosomal_S30AE	0.71
PF08239	SH3_3	0.71

COG ID	Name	Functional Category	% Frequency in 141 Family Scaffolds
COG0162	Tyrosyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.84
COG0180	Tryptophanyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.84
COG5267	Uncharacterized conserved protein, DUF1800 family	Function unknown [S]	2.84
COG1995	4-hydroxy-L-threonine phosphate dehydrogenase PdxA	Coenzyme transport and metabolism [H]	2.13
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.42
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.42
COG1354	Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family	Replication, recombination and repair [L]	1.42
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.42
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.71
COG1559	Endolytic transglycosylase MltG, terminates peptidoglycan polymerization	Cell wall/membrane/envelope biogenesis [M]	0.71
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	0.71
COG1979	Alcohol dehydrogenase YqhD, Fe-dependent ADH family	Energy production and conversion [C]	0.71
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.71
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.71
COG1544	Ribosome-associated translation inhibitor RaiA	Translation, ribosomal structure and biogenesis [J]	0.71
COG3125	Heme/copper-type cytochrome/quinol oxidase, subunit 4	Energy production and conversion [C]	0.71
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.71
COG3717	5-keto 4-deoxyuronate isomerase	Carbohydrate transport and metabolism [G]	0.71
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.71
COG4403	Lantibiotic modifying enzyme	Defense mechanisms [V]	0.71
COG5441	ATP-binding helicase-inhibiting domain, Tm-1/UPF0261 family	Defense mechanisms [V]	0.71
COG0533	tRNA A37 threonylcarbamoyltransferase TsaD	Translation, ribosomal structure and biogenesis [J]	0.71
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.71
COG0217	Transcriptional and/or translational regulatory protein YebC/TACO1	Translation, ribosomal structure and biogenesis [J]	0.71
COG0337	3-dehydroquinate synthetase	Amino acid transport and metabolism [E]	0.71
COG0361	Translation initiation factor IF-1	Translation, ribosomal structure and biogenesis [J]	0.71
COG0371	Glycerol dehydrogenase or related enzyme, iron-containing ADH family	Energy production and conversion [C]	0.71
COG0373	Glutamyl-tRNA reductase	Coenzyme transport and metabolism [H]	0.71
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.71
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.71
COG1550	Stress-induced protein YlxP, DUF503 family	Function unknown [S]	0.71
COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	Replication, recombination and repair [L]	0.71
COG0848	Biopolymer transport protein ExbD	Intracellular trafficking, secretion, and vesicular transport [U]	0.71
COG1214	tRNA A37 threonylcarbamoyladenosine modification protein TsaB	Translation, ribosomal structure and biogenesis [J]	0.71
COG1322	DNA anti-recombination protein (rearrangement mutator) RmuC	Replication, recombination and repair [L]	0.71
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.71
COG1454	Alcohol dehydrogenase, class IV	Energy production and conversion [C]	0.71
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.71

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.18 %
Unclassified	root	N/A	24.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.18 %
Unclassified	root	N/A	24.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.18 %
Unclassified	root	N/A	24.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	36.17 %
Unclassified	root	N/A	24.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.55 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.82 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.48 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	9.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.55 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.71 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.48 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	9.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.55 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.71 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.48 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	9.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.55 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.71 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.48 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	9.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.55 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	0.71 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.48 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	7.09 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.55 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	2.84 %
unclassified Terriglobus	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → unclassified Terriglobus	0.71 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.48 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	7.09 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.55 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	2.84 %
Terriglobus sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → unclassified Terriglobus → Terriglobus sp.	0.71 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_104061169	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300000858\|JGI10213J12805_10632901	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300000956\|JGI10216J12902_117994180	All Organisms → cellular organisms → Bacteria → Acidobacteria	760	Open in IMG/M
3300001213\|JGIcombinedJ13530_106389189	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300002124\|C687J26631_10000269	All Organisms → cellular organisms → Bacteria	20714	Open in IMG/M
3300002561\|JGI25384J37096_10074679	All Organisms → cellular organisms → Bacteria → Acidobacteria	1236	Open in IMG/M
3300002908\|JGI25382J43887_10136403	All Organisms → cellular organisms → Bacteria → Acidobacteria	1261	Open in IMG/M
3300004114\|Ga0062593_101112562	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300004643\|Ga0062591_102260891	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300005166\|Ga0066674_10083932	All Organisms → cellular organisms → Bacteria → Proteobacteria	1468	Open in IMG/M
3300005175\|Ga0066673_10318287	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300005290\|Ga0065712_10505470	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	646	Open in IMG/M
3300005328\|Ga0070676_10340303	Not Available	1029	Open in IMG/M
3300005328\|Ga0070676_11002987	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300005331\|Ga0070670_100301722	All Organisms → cellular organisms → Bacteria → Proteobacteria	1401	Open in IMG/M
3300005332\|Ga0066388_101109788	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300005333\|Ga0070677_10245064	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300005333\|Ga0070677_10823711	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300005336\|Ga0070680_101342976	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300005338\|Ga0068868_100267526	All Organisms → cellular organisms → Bacteria	1443	Open in IMG/M
3300005347\|Ga0070668_100059347	All Organisms → cellular organisms → Bacteria	2961	Open in IMG/M
3300005347\|Ga0070668_100175782	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1746	Open in IMG/M
3300005347\|Ga0070668_100941908	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300005353\|Ga0070669_100161050	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → unclassified Terriglobus → Terriglobus sp.	1744	Open in IMG/M
3300005356\|Ga0070674_101207651	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300005364\|Ga0070673_100835535	All Organisms → cellular organisms → Bacteria → Acidobacteria	852	Open in IMG/M
3300005367\|Ga0070667_101981162	Not Available	548	Open in IMG/M
3300005400\|Ga0066867_10310867	Not Available	564	Open in IMG/M
3300005455\|Ga0070663_100559533	Not Available	957	Open in IMG/M
3300005455\|Ga0070663_100740240	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300005456\|Ga0070678_100779196	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300005456\|Ga0070678_100957071	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300005457\|Ga0070662_101920486	Not Available	511	Open in IMG/M
3300005467\|Ga0070706_100400079	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1278	Open in IMG/M
3300005518\|Ga0070699_100706206	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300005548\|Ga0070665_100465422	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300005553\|Ga0066695_10111380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1684	Open in IMG/M
3300005598\|Ga0066706_10508356	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	959	Open in IMG/M
3300005603\|Ga0066853_10029986	All Organisms → cellular organisms → Bacteria	1905	Open in IMG/M
3300005617\|Ga0068859_100456046	All Organisms → cellular organisms → Bacteria → Proteobacteria	1374	Open in IMG/M
3300005719\|Ga0068861_100939672	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	821	Open in IMG/M
3300005840\|Ga0068870_11440932	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300005843\|Ga0068860_100528678	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300005938\|Ga0066795_10099863	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	863	Open in IMG/M
3300005947\|Ga0066794_10054008	Not Available	1191	Open in IMG/M
3300006038\|Ga0075365_10424540	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300006042\|Ga0075368_10014073	All Organisms → cellular organisms → Bacteria → Proteobacteria	2949	Open in IMG/M
3300006051\|Ga0075364_10532958	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300006177\|Ga0075362_10695574	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300006178\|Ga0075367_10019606	All Organisms → cellular organisms → Bacteria → Proteobacteria	3752	Open in IMG/M
3300006178\|Ga0075367_10067642	All Organisms → cellular organisms → Bacteria	2142	Open in IMG/M
3300006178\|Ga0075367_10127509	All Organisms → cellular organisms → Bacteria	1571	Open in IMG/M
3300006178\|Ga0075367_10429253	All Organisms → cellular organisms → Bacteria → Acidobacteria	837	Open in IMG/M
3300006237\|Ga0097621_102151262	Not Available	533	Open in IMG/M
3300006796\|Ga0066665_10196201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1564	Open in IMG/M
3300006844\|Ga0075428_101988587	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300006845\|Ga0075421_100906465	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	1005	Open in IMG/M
3300006853\|Ga0075420_100320134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1344	Open in IMG/M
3300006853\|Ga0075420_100796866	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300006881\|Ga0068865_100353935	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300006881\|Ga0068865_100799349	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300006894\|Ga0079215_10276422	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300006894\|Ga0079215_10411233	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300006894\|Ga0079215_11624344	Not Available	515	Open in IMG/M
3300009038\|Ga0099829_10183450	All Organisms → cellular organisms → Bacteria → Acidobacteria	1686	Open in IMG/M
3300009090\|Ga0099827_10114049	All Organisms → cellular organisms → Bacteria → Acidobacteria	2166	Open in IMG/M
3300009090\|Ga0099827_11158299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300009551\|Ga0105238_12422978	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	560	Open in IMG/M
3300009789\|Ga0126307_10840044	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	741	Open in IMG/M
3300009868\|Ga0130016_10443272	Not Available	848	Open in IMG/M
3300010037\|Ga0126304_10940942	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300010166\|Ga0126306_10595398	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300011270\|Ga0137391_10244129	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1558	Open in IMG/M
3300012208\|Ga0137376_10515351	Not Available	1037	Open in IMG/M
3300012488\|Ga0157343_1038740	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300012903\|Ga0157289_10125518	All Organisms → cellular organisms → Bacteria → Acidobacteria	764	Open in IMG/M
3300012903\|Ga0157289_10291444	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300012906\|Ga0157295_10010025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1659	Open in IMG/M
3300013308\|Ga0157375_11947456	Not Available	698	Open in IMG/M
3300015052\|Ga0137411_1241308	All Organisms → cellular organisms → Bacteria → Acidobacteria	856	Open in IMG/M
3300015200\|Ga0173480_10060833	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1728	Open in IMG/M
3300015371\|Ga0132258_11303495	All Organisms → cellular organisms → Bacteria	1835	Open in IMG/M
3300017792\|Ga0163161_11954247	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300018000\|Ga0184604_10117662	All Organisms → cellular organisms → Bacteria → Acidobacteria	844	Open in IMG/M
3300018429\|Ga0190272_13012097	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300018476\|Ga0190274_13398946	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300018481\|Ga0190271_10066047	All Organisms → cellular organisms → Bacteria	3168	Open in IMG/M
3300018481\|Ga0190271_10103452	All Organisms → cellular organisms → Bacteria	2631	Open in IMG/M
3300018481\|Ga0190271_10283986	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	1707	Open in IMG/M
3300018481\|Ga0190271_11228964	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	871	Open in IMG/M
3300021082\|Ga0210380_10476279	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300023102\|Ga0247754_1074013	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	807	Open in IMG/M
3300023270\|Ga0247784_1214837	Not Available	506	Open in IMG/M
3300025901\|Ga0207688_10071131	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1974	Open in IMG/M
3300025903\|Ga0207680_11085592	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300025907\|Ga0207645_10414125	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	907	Open in IMG/M
3300025918\|Ga0207662_11114033	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300025920\|Ga0207649_10978898	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300025923\|Ga0207681_11870664	Not Available	500	Open in IMG/M
3300025926\|Ga0207659_10062100	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	2695	Open in IMG/M
3300025926\|Ga0207659_10230691	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1493	Open in IMG/M
3300025930\|Ga0207701_10222734	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1652	Open in IMG/M
3300025933\|Ga0207706_10376895	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1231	Open in IMG/M
3300025937\|Ga0207669_10249790	All Organisms → cellular organisms → Bacteria → Acidobacteria	1320	Open in IMG/M
3300025942\|Ga0207689_10078689	All Organisms → cellular organisms → Bacteria	2710	Open in IMG/M
3300025972\|Ga0207668_10121592	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1978	Open in IMG/M
3300025986\|Ga0207658_10094966	All Organisms → cellular organisms → Bacteria	2322	Open in IMG/M
3300025986\|Ga0207658_10611108	Not Available	980	Open in IMG/M
3300026075\|Ga0207708_10049211	All Organisms → cellular organisms → Bacteria	3209	Open in IMG/M
3300026118\|Ga0207675_100056986	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	3645	Open in IMG/M
3300027882\|Ga0209590_10085371	All Organisms → cellular organisms → Bacteria	1853	Open in IMG/M
3300028379\|Ga0268266_10246129	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1652	Open in IMG/M
3300028379\|Ga0268266_11548370	All Organisms → cellular organisms → Bacteria → Acidobacteria	638	Open in IMG/M
3300028592\|Ga0247822_10080055	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2326	Open in IMG/M
3300028784\|Ga0307282_10064931	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1650	Open in IMG/M
3300028812\|Ga0247825_11452609	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300031903\|Ga0307407_10532951	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	865	Open in IMG/M
3300032013\|Ga0310906_10632701	Not Available	741	Open in IMG/M
3300032075\|Ga0310890_10521168	All Organisms → cellular organisms → Bacteria → Acidobacteria	907	Open in IMG/M
3300032211\|Ga0310896_10282237	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300033486\|Ga0316624_10111941	All Organisms → cellular organisms → Bacteria → Acidobacteria	1952	Open in IMG/M
3300034257\|Ga0370495_0024042	Not Available	1818	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.48%
Host-Associated	Host-Associated	46.81%
Engineered	Engineered	0.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	47.52%
Plants	Host-Associated → Plants	46.81%
Aquatic	Environmental → Aquatic	4.96%
Wastewater	Engineered → Wastewater	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.10%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.66%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.06%
Roots	Host-Associated → Plants → Roots	7.09%
Marine	Environmental → Aquatic → Marine	3.55%
Freshwater	Environmental → Aquatic → Freshwater	0.71%
Sediment	Environmental → Aquatic → Sediment	0.71%
Peat	Environmental → Terrestrial → Peat	0.71%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.71%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	22.70%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.22%
Loam	Environmental → Terrestrial → Soil → Loam	6.38%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	5.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.84%
Oceanic	Environmental → Aquatic → Marine → Oceanic	2.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.42%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.42%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.42%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.71%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.71%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.71%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.71%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	22.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.02%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.22%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	5.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.26%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.55%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	1.42%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.42%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.42%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.42%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.71%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	0.71%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.71%
Unclassified	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified	0.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.71%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.71%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.71%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.71%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.71%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	12.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	7.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.38%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	5.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.84%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.84%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.13%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.13%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.42%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.42%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.71%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	0.71%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.71%
Hydrothermal Vent Plume	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume	0.71%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.71%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.71%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.71%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.71%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.71%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.71%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.71%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.71%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001768	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Deep Background Supr62	Environmental	Open in IMG/M
3300002124	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005400	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005603	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300005947	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006313	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770m	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009868	Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant	Engineered	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012488	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610	Host-Associated	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300023270	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409R-5	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1040611692	3300000364	Soil	VVKAPLHSTVDASGLAALLLVQIFPISSLVAPCQSGASPVSV
JGI10213J12805_106329012	3300000858	Soil	VEVTLHSTSDASRLAALLLPYILPVCAVVAPCQAGASLVSVRRVTSTMDS*
JGI10216J12902_1179941801	3300000956	Soil	MQAFRTGPLAWPPVVKVWLHSTGDASPLAALRLRQILPVFSVGALAIGASPVSVRRQTFTTG
JGIcombinedJ13530_1063891892	3300001213	Wetland	VVQVPLHSTDDASRHAALLVVQILPVFSLLAPCDPGASSVSVPQGTCTTDCQRTFGP*
supr62_10277673	3300001768	Hydrothermal Vent Plume	VVKVRLHSTAAASRLPALLLGHILPVFSLVASYQTGASPVSVPRRTFTTDC*
C687J26631_1000026912	3300002124	Soil	VVKVPLHSTSDASRLAALLLRQILPVFSVVAPGQPGASLVSVRRGAFTTGC*
JGI25384J37096_100746791	3300002561	Grasslands Soil	WLHSTGDASPPAALLLAQILPVFSVVAPCPRGASPVSVRRQTFTTGC*
JGI25382J43887_101364033	3300002908	Grasslands Soil	VVKVWLHSTGDASPPAALLLAQILPVFSVVAPCPRGASPVSVRRQTFTTGC*
Ga0062593_1011125622	3300004114	Soil	MDVPLHSTDDASRLAALLLPQIFPISSVVAPCQPGATSVSVRRGPSTTGS*
Ga0062592_1021342791	3300004480	Soil	VSEVRLHSAGDASRLAALLVGHILPVCSLLAPCGTGASPPSVHNEFLRRH*
Ga0062591_1022608912	3300004643	Soil	MKVPLHSTDDASRRSALLVGRIFPIFFLLAPGSPGASPVSVRRGTFTTDS*
Ga0066674_100839321	3300005166	Soil	LHSTSDASPPAALLLLQILPVFSVVAPCRRGASLVSVRRQTFTTGC*
Ga0066673_103182871	3300005175	Soil	LAALLLPQILPVFSVVAPCHRGASPVSVQRQTFTTGCQSLKLVPF*
Ga0066685_103012482	3300005180	Soil	VVKLQLYSVGDASPLTALLLVQILAIFSLVAPCQRGASPPSVRRWSFTTGR*
Ga0065712_105054702	3300005290	Miscanthus Rhizosphere	TGDASRLAALLLRRIFPIFSVVAPGQTGASPVSVRRGSSTTSC*
Ga0065705_109174732	3300005294	Switchgrass Rhizosphere	VVEVRLHSAGAASRLAALLLVQILPVFSLVAPCQPGASPASVPRRTFTTGC*
Ga0070676_103403032	3300005328	Miscanthus Rhizosphere	MDVPLHSTDDASRLAALLLPQIFPISSVVAPCQPGASSVSVRRG
Ga0070676_110029871	3300005328	Miscanthus Rhizosphere	VDMQLHSTDEASRLAALLLPRISPISSVVAPGQSGASSVSVRRRMSTADS*
Ga0070670_1003017222	3300005331	Switchgrass Rhizosphere	MPMPLHSTGDASPLVALLLPQILPVFSVVAPCQWGASPVSVRRGTGITGS*
Ga0066388_1011097882	3300005332	Tropical Forest Soil	VVKAWLHSTGDASPLAALLLAQILPVFSVVAPCQRGASPVSVRRQTFTTGC*
Ga0070677_102450642	3300005333	Miscanthus Rhizosphere	VDMQLHSTDEASRLAALLLPRISPISSVVAPGQSGASSVSVRRRMSTADS
Ga0070677_108237112	3300005333	Miscanthus Rhizosphere	VVKRQLHSAGDASPLAALLLAQILPVFSVVAPCPRGASPVSVRRQTLITGD*
Ga0070680_1013429762	3300005336	Corn Rhizosphere	VVQVPLHSTGDASRLAALLLPQIFPIFLVVAPGQPGASPVSVQRGTCTTDC*
Ga0068868_1002675261	3300005338	Miscanthus Rhizosphere	PVVKVPRHSTGDASRRSALLVGRIFPIFSLLAPGSPGASPVSVQRGTFTTDS*
Ga0070668_1000593474	3300005347	Switchgrass Rhizosphere	MDVPLHSTDDASRLAALLLPQIFPISSVVAPCQPGASSVSVRRGTSTTGS*
Ga0070668_1001757822	3300005347	Switchgrass Rhizosphere	VKVPLHSTDDASRLAALLLRRILPVFSVVAPGQPGASPVSVPRGTFTTGS*
Ga0070668_1009419082	3300005347	Switchgrass Rhizosphere	MKMPLHSTNDASRLPALLLGRIFPIFSLVAPCQAGASSVSVRRGTFIADSL*
Ga0070669_1001610502	3300005353	Switchgrass Rhizosphere	MRVWLQSTGDASPRAALLLAQILPVFSVVAPCPRGASPVSVRRQTLITGD*
Ga0070674_1012076512	3300005356	Miscanthus Rhizosphere	VVQPPLHSTTDASRLAALLLPQIFPIFLVVAPCDPGASAVSVPRGSSTTGC*
Ga0070673_1008355352	3300005364	Switchgrass Rhizosphere	WLHSTGDASPGAALLLAQILPVFSVVAPCPRGASPVSVRRQTLITGD*
Ga0070667_1019811621	3300005367	Switchgrass Rhizosphere	EGPLHSTDDASRRSALLVGRIFPIFFLLAPGSPGASPVSVRRGTFTTGS*
Ga0070667_1020022471	3300005367	Switchgrass Rhizosphere	VKARLHSANAASRLAALLNAQILPVFSRFAPCDPGASSTSVQRRTFTTGC*
Ga0066867_103108671	3300005400	Marine	VVKVPLHSSADASRPAALLIGRILPACSLFAPGGAGASALSMLRGTFTTDC*
Ga0066682_104741522	3300005450	Soil	KQPVVKLQLHSVGDASPLTALLLVQILAIFSLVAPCQRGASPPSVRRWSFTTGR*
Ga0070663_1005595331	3300005455	Corn Rhizosphere	MELPLHSPGDASRLAALLLRRIFPIFFVVAPCQPGASPGSVRRGSSTTGS*
Ga0070663_1007402402	3300005455	Corn Rhizosphere	VDMQLHSTDEASRLAALLLPRISPISSVVAPGQSGASSVTVRRRMSTADS*
Ga0070678_1007791962	3300005456	Miscanthus Rhizosphere	MKVTLHSTSDASRLTALLLRRIFPIFSVVAPGQAGASLVSVRRATFTTDS*
Ga0070678_1009570711	3300005456	Miscanthus Rhizosphere	VHRRGTLSEQPVVTVPLHSTGDASRVAALLLGRILPVCSLVAPGHAGASPVSVPRG
Ga0070662_1019204861	3300005457	Corn Rhizosphere	VVQPPLHSTTDASRLAALLLPQIFPIFLVVAPCDPGASAVSVPRGSSTTG
Ga0070706_1004000791	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	QVPLHSTGDASRLAALLLPQIFPIFLVVAPGQPGASPVSVQRGTCTTDC*
Ga0070699_1001606462	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VVKVWLHSTGDASPPAALLLPQILPVFSVVAPCRRGASPVSVRRQTFTTGC*
Ga0070699_1007062062	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	HSTGDASPLAALLLAQILPVFSVVAPCHRGASPVSVRRPTFTTGC*
Ga0070665_1004654222	3300005548	Switchgrass Rhizosphere	MELPLHSPGDASRLAALLLRRIFPIFSVVAPCQPDASPGSVRRGSSTTGS*
Ga0066695_101113803	3300005553	Soil	HSTGDASPGAALLLLQILAVFSVVAPCPRGASPVSVRRQTLTTGCWERVREM*
Ga0066698_107473692	3300005558	Soil	HSAGAASRLAALLLVQILPVFSLVAPCHPGASPPSVRRWTFTTGC*
Ga0066706_105083562	3300005598	Soil	QLHSAGDASPLTALLLPQIFPIFSVVAPCHRGASPPSVRRRTFTTGC*
Ga0066706_107117922	3300005598	Soil	VVKLQLHSAGAASRLAALLLVQILPVFSLVAPCQPGASPPSVRRWTFTTGC*
Ga0066853_100299861	3300005603	Marine	QPVVKVPLHSSADASRPAALLIGRILPACSLFAPGGAGASALSMLRGTFTTDC*
Ga0068859_1004560461	3300005617	Switchgrass Rhizosphere	LHSTGDASPPAALLLAQILPVFSLGAPCRRGASPVSVQRQTFITGC*
Ga0068859_1011569431	3300005617	Switchgrass Rhizosphere	VVKVRLHSARAASRLAASRNAQVLPVFSRFAPGNPGASPASVQRRTFTS
Ga0068861_1009396721	3300005719	Switchgrass Rhizosphere	VVQSPLHSTTDASRLAALLLPQIFPIFLVVAPCDPGASAVSVPR
Ga0068870_114409322	3300005840	Miscanthus Rhizosphere	MRVWLQSTGDASPRAALLLAQILPVFSVVAPCPRGASPVSVRRQTFTTAC*
Ga0068860_1005286782	3300005843	Switchgrass Rhizosphere	VVNVPLHSTGDASRLAALLLRRILPVSIVAPGHAGASPVSVPRGTFTTGC*
Ga0066795_100998631	3300005938	Soil	VKVRLHSAGAASRLAALLLPQIFPIFSVVAPCQPGAAPASVRRRTFTTGC*
Ga0066794_100540082	3300005947	Soil	VVNVRLHSAGAASRLAALLLPQIFPIFSVVAPCQPGAAPASVRRRTFTTGC*
Ga0075365_104245402	3300006038	Populus Endosphere	MEGPLHSTVDASRPAALLLHRIFPIFSVVAPSQPGASPVSVRRGTSTTGS*
Ga0075368_100140732	3300006042	Populus Endosphere	VKVPLHSSADASRPAALLLGRICPIFGLVAPGEPGASAVSVRRGTFTTGSW*
Ga0075364_105329582	3300006051	Populus Endosphere	MKVPLHSTDDASRRSALLVGRIFPIFFLLAPGSPGASPVSVRRGTSTT
Ga0075362_106955741	3300006177	Populus Endosphere	PLHSTNDASRLAALLLGRILPIFSLVAPGQAGASSVSLRRGTFTTASYA*
Ga0075367_100196063	3300006178	Populus Endosphere	VKVPLHSTADASRLAALLLGRIFPIFSLVAPGEPGASAVSVRRGTFTPDS*
Ga0075367_100676423	3300006178	Populus Endosphere	MPMPLHSTGDASPLAALLLPQILPVFSVVAPCQWGASPVSVRRGTGITGS*
Ga0075367_101275091	3300006178	Populus Endosphere	PLHSTGDASRLAALLLRRILPVFSIVAPGHAGASPVSVPRGTFTTGC*
Ga0075367_104292532	3300006178	Populus Endosphere	VELPLHSTADSSRLAALLLRRILPVSFVVAPCQPGASAVSVRRVSSTTGS*
Ga0097621_1021512622	3300006237	Miscanthus Rhizosphere	VDMQLHSTTDASRLAALLLPRISPIFLVVAPYHPGASAVSVRRCMST
Ga0068472_102417192	3300006313	Marine	VQRHSTGAASRLPALLLGHRLPVFSLVASYQTGASPVSVPRQTFTTDC*
Ga0066665_101962012	3300006796	Soil	VVKVWLHSTSDASPPAALLLLQILPVFSVVAPCRRGASLVSVRRQIFTTAC*
Ga0075428_1019885872	3300006844	Populus Rhizosphere	VVKVWLHSTGDASPLAALLLAQILPVFSVVAPCQRGASPVSVRRQTFTTGC*
Ga0075421_1009064651	3300006845	Populus Rhizosphere	LWLHSTGDASSLAALLLHQIFPIFSVVAPWQRGASPISMRRQTFTTDC*
Ga0075420_1003201342	3300006853	Populus Rhizosphere	VVKRQLHSAGDASPRAALLLLHILPVFSVVAPCPRGASPASVRRWRFTTGC*
Ga0075420_1007968662	3300006853	Populus Rhizosphere	VNPQLHSTGDASSLASLLLAQILPVFSVVAPCQRGASPVSVRRRGSTTGCKEFRV*
Ga0068865_1003539352	3300006881	Miscanthus Rhizosphere	MKVPLHSTDDASRRSALLVGRIFPIFFLLAPGSPGASPVSVRRGTFTTGC*
Ga0068865_1007993492	3300006881	Miscanthus Rhizosphere	MKVPLHSTADASRRSALLVGRIFPIFSLLAPGSAGASPVSVRRGTFITSS*
Ga0079215_102764222	3300006894	Agricultural Soil	VVKVPLHSTGAASRLTALLLPQIHWVFSVVAPCQPGASPVSVQRGTFTTGC*
Ga0079215_104112332	3300006894	Agricultural Soil	VEKVPLHSTGAASRLTALLLPQIHWVFSVAAPCQPGASPVSVQRGTFTRLLAQT*
Ga0079215_116243442	3300006894	Agricultural Soil	QLHSAGDASPRAALLLPQILPVFSVVAPCPRGASPASVRRRRFTTGC*
Ga0099829_101834501	3300009038	Vadose Zone Soil	STGDASPPAALLLLQILPVFSVVAPCRRDASPVSVRRQTFTTGC*
Ga0099827_101140492	3300009090	Vadose Zone Soil	HSTGDASPLAALLLPQMLPVFSVVAPCYQNDSPVSVQRQTFTTCC*
Ga0099827_111582991	3300009090	Vadose Zone Soil	DASPLAALLLPQILPIFSVVAPSHRNASPVSVQRQTFTTGSWGPTKVGPYDASES*
Ga0066709_1029443561	3300009137	Grasslands Soil	PVVKLQLHSAGAASRLAALLLVQILPVFSLVAPCHPGTSPPSVRRWTFTTGR*
Ga0105238_124229781	3300009551	Corn Rhizosphere	TGDASRRSALLVGRIFPIFSLLAPGSPGASPVSVQRGTFTTDS*
Ga0126307_108400442	3300009789	Serpentine Soil	VVNVPLHSTVDASRLAALLLGRIFPIFSVVAPCQPGASPVSVRRGTFT
Ga0130016_104432721	3300009868	Wastewater	ALHSTGGASRLAALLLPQILAVFSVVAPGQPGAAPVSVRRGTSTTDC*
Ga0126304_109409423	3300010037	Serpentine Soil	VKVPLHSTDDASRLAALLLPQIFPIFLVVAPGQAGASPVSVPRG
Ga0126306_105953982	3300010166	Serpentine Soil	MKVPLHSTADASGRSALLVGRIFPIFSLLAPGSTGASSVSVPRGTFITGS*
Ga0137391_102441291	3300011270	Vadose Zone Soil	TGDASPLAALLLPQILPVFSVVAPCQRGASPVSVLAGTFTTAC*
Ga0137383_100515341	3300012199	Vadose Zone Soil	MDAVASATTQQPVVKVRLHSAGDASPLTALLLPHIFPICSVVAPCHRGASPPSVRRRTFTTGC
Ga0137376_105153511	3300012208	Vadose Zone Soil	VNVWLHSTGDASPLAALLLRQMLPVFSVVAPCHRGASPVSVRRQTFTTGC*
Ga0137377_103858911	3300012211	Vadose Zone Soil	QPVVKLQLHSAGAASRLAALLLVQILPVFSLVAPCQPGASPPSVQRWTFTTGC*
Ga0157343_10387402	3300012488	Arabidopsis Rhizosphere	VKPWEPVVKVPLHSTDDASHLAALLLRRIFPIFSIVAPCQPGASPVSMRRGTFTTGS*
Ga0157289_101255181	3300012903	Soil	VVEVPLHSTGDASRLAALLLIQILPVFSIVAPCQPGASPVSVQRGTSTTGC*
Ga0157289_102914441	3300012903	Soil	VVKVPLHSTGDASRRSALLVGRIFPIFFLLAPGSPGASPVSVRRGTSTTDS*
Ga0157295_100100251	3300012906	Soil	MDVPLHSTDDASRLAALLLPQIFPISSVVAPCQPGAS
Ga0157375_119474562	3300013308	Miscanthus Rhizosphere	MDDASRRSALLVGRIFPIFFLLAPGSAGVSPVSVLRGRFTTGCLALH*
Ga0163163_122168121	3300014325	Switchgrass Rhizosphere	RLHSANAASRLAALLNAQILAVFSRFAPCDPGASSASLQRRTFTTGC*
Ga0137411_12413081	3300015052	Vadose Zone Soil	QPVVVVKVWLHSTGDASPPAALLLAQILPVFSVVAPCRRGASPVSVRRQTFTTGC*
Ga0173480_100608332	3300015200	Soil	MKVTLHSTSDASRLTALLLRRIFPIFSVVAPGQAGASLVSVRRATSTTDS*
Ga0132258_113034952	3300015371	Arabidopsis Rhizosphere	MLKEPVVKVPLHSTDDASRLAALLLPRIFSIFSVVAPCQAGASSVSVRRGTFTTGS*
Ga0163161_119542471	3300017792	Switchgrass Rhizosphere	LTQQPVVKRPRHSTSDPSRRSALLVGRIFPIFFLLAPGSAGVSPVSVLRGRFTTGCLALH
Ga0184604_101176621	3300018000	Groundwater Sediment	PAVKVWLHSTGDASSLAALLLAQIFPIFSLVAPCHRGASPGSVRRQTFTTGC
Ga0190272_130120972	3300018429	Soil	VVKVPLDSTSDASRLAALLLRQILPVFSVVAPGQPGASLVSVRRGTFTTDC
Ga0190274_133989462	3300018476	Soil	AKVPLHSTADASRLAAFLLGRIFPIVFLVAPGDPGASAVSMRRGIFTTDSSCPLFC
Ga0190271_100660471	3300018481	Soil	VKVPLHSTDDASRLAALLLPHIFPIFSVVAPCQAGASSVSVPRGTFTTGSYGPTGT
Ga0190271_101034523	3300018481	Soil	MDMPLHSTADASRLAALLLPRILPIFSVVAPCQSGASAVSVRRCMSTADSSQ
Ga0190271_102839861	3300018481	Soil	EPVVKVPLHSTDDASRLAALLLPQIFPIFSVVAPCQAGASSVSVPRGTVTTGS
Ga0190271_112289642	3300018481	Soil	MDVPLHSTDDASRLAALLLPQIFPISSVVAPCQPGASSVSVRRGTSTTGS
Ga0210380_104762791	3300021082	Groundwater Sediment	VVKAPLHSTVDASRLAALLLVQIFPISSLVAPGHAGASPVSVRRS
Ga0247754_10740132	3300023102	Soil	VKVPLHSTDDASRLAALLLPQIFPIFSVVAPCQAGASPVSVPRGTVTT
Ga0247784_12148372	3300023270	Plant Litter	MELPLHSPGDASRLAALLLRRIFPIFFVVAPCQPGASPGSVRRGSSTTGS
Ga0207688_100711312	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MDVPLHSTDDASRLAALLLPQIFPISSVVAPCQPGATSVSVRRGPSTTGS
Ga0207680_106027371	3300025903	Switchgrass Rhizosphere	MNSRSRLPAWQPVAKVHLHSPNAASRLAALLNAQILPVFSRLAPGDPGASSASV
Ga0207680_110855921	3300025903	Switchgrass Rhizosphere	LAKVWLHSTGDASSLAALLLAQIFPIFSVVAPCQRGASPVSVRRQTFTTGC
Ga0207645_104141253	3300025907	Miscanthus Rhizosphere	MKVTLHSTSDASRLTALLLRRIFPIFSVVAPGQAGASLVSVRRATFTTDS
Ga0207662_111140331	3300025918	Switchgrass Rhizosphere	MKVTLHSTSDASRLTALLLRRIFPIFSVVAPGQAGASLVSVRRA
Ga0207649_109788981	3300025920	Corn Rhizosphere	MKVPLHSTDDASRRSALLVGRIFPIFFLLAPGSPGASPVSVRRGTFT
Ga0207681_118706641	3300025923	Switchgrass Rhizosphere	MKMPLHSTNDASRLPALLLGRIFPIFSLVAPCQAGASSVSVRRGTFIADSL
Ga0207659_100621002	3300025926	Miscanthus Rhizosphere	MKVPLHSTDDASRRSALLVGRIFPIFFLLAPGSPGASPVSVRRGTFTTDS
Ga0207659_102306912	3300025926	Miscanthus Rhizosphere	MKVTLHSTSDASRLTALRLRRIFPIFSVVAPGQAGASLVSVRRATFTTDS
Ga0207701_102227342	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MDVPLHSTDDASRLAALLLPQIFPIFSVVAPCQSGASPVSMRRGSSTTNSCR
Ga0207706_103768952	3300025933	Corn Rhizosphere	MKVTLHSTSDASRLTALLLRRIFPIFSVVAPGQAGASLVSVRRATSTTDS
Ga0207669_102497903	3300025937	Miscanthus Rhizosphere	MKMPLHSTNDASRLPALLLGRIFPIFSLVAPCQAGASSVSVRRGTFIA
Ga0207691_106138402	3300025940	Miscanthus Rhizosphere	MDLLEQPVVKLWLHSAGAASRLAALLVARIFPIFGLLAPCQAGASPASVPRPTFTTGC
Ga0207689_100786892	3300025942	Miscanthus Rhizosphere	MPMPLHSTGDASPLVALLLPQILPVFSVVAPCQWGASPVSVRRGTGITGS
Ga0207668_101215923	3300025972	Switchgrass Rhizosphere	MELPLHSPGDESRLAALLLRRIFPIFFVVAPCQPGASPGS
Ga0207658_100949663	3300025986	Switchgrass Rhizosphere	MKVPLHSTADASRRSALLVGRIFPIFSLLAPGSAGASPVSVRRGTFITSS
Ga0207658_106111081	3300025986	Switchgrass Rhizosphere	MELPLHSPGDESRLAALLLRRIFPIFFVVAPCQPGASPGSVRRGSSTTGS
Ga0207708_100492113	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MELPLHSPGDASRLTALLLGQMFPTFSLVAPCQPGASPGSVQRGHSTTDCYP
Ga0207675_1000569865	3300026118	Switchgrass Rhizosphere	MQLHSTDEASRLAALLLPRISPISSVVAPGQSGASSVSVRRRMSTADS
Ga0209590_100853711	3300027882	Vadose Zone Soil	VVKVWLHSTSDASPPAALLLLQILPVFSVVAPCRRGASLVSVRRQTFT
Ga0268266_102461291	3300028379	Switchgrass Rhizosphere	MDRPDWDVTWQPVVKVWLDSTGDASPLTALLLAQIFPISTVVAPCQRGASSVSVRR
Ga0268266_115483702	3300028379	Switchgrass Rhizosphere	MKVTLHSTSDASRLTALLLRRIFPIFSVVAPGQAGASLVSVR
Ga0247822_100800551	3300028592	Soil	PDPSAIWEPAVTVPLHSTLDASRRAALLLDRIFPIFSLVAPGPPGASPVSVLRGSVTAGSLPA
Ga0307282_100649311	3300028784	Soil	STGDASPPAALLLPQILPVFSVVAPCQRGASPVSVLAGTFTTGC
Ga0247825_114526091	3300028812	Soil	PFVATDDASRLAALLLPQIFPIFSVVAPCQAGASSVSVPRGTFTTGS
Ga0307407_105329511	3300031903	Rhizosphere	VKLPLHSTGDPSRLAALLLPRMFPIFSVVAPGQSGASPVSMRLG
Ga0311367_116330291	3300031918	Fen	VVKVRLHSANAASRLAALLNAQILPVFSRFAPGDPGASSASSASVRQRTFTKGCWGLVLVLGAAAS
Ga0310906_106327011	3300032013	Soil	VKLPLHSTVDASRLAALLLPQIFPIFSVVAPCQAGASSVSVPRGTFTTGS
Ga0310890_105211681	3300032075	Soil	DASRLTALLLPQILPVFSVVAPGQAGASPVSVQRGTFTPDS
Ga0310896_102822371	3300032211	Soil	PALHSTSDASPLAALLLPRIFPIFSVVAPGDRGASLVSVRRGGFTTGCKAAAKPMT
Ga0214472_110288972	3300033407	Soil	VEKVGLHSPNAASRLAALLLGRIQAVFSLVAPCHPGASPGSVQRPTFTTG
Ga0316624_101119412	3300033486	Soil	VVKVQLHSTGDASRLAALLLPQVFPILSVVAPGQPRASPVSVLTLDFHHGLI
Ga0370495_0024042_541_696	3300034257	Untreated Peat Soil	VVKLPLHSTSDASRLAALLLSQILPVSSVVAPCQTGASLVSVPRGTFTTGS

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F053395

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


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