Metagenome Family F053367

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F053367
Family Type	Metagenome
Number of Sequences	141
Average Sequence Length	59 residues
Representative Sequence	GWRGPLWRYYRDFDPNLASIRDEPEFKAVFADIERDIARQRAELAARPKDAPLDLGATN
Number of Associated Samples	101
Number of Associated Scaffolds	141

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.47 %
% of genes near scaffold ends (potentially truncated)	90.78 %
% of genes from short scaffolds (< 2000 bps)	93.62 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.028 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (22.695 % of family members)
Environment Ontology (ENVO)	Unclassified (35.461 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (36.879 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.68% β-sheet: 0.00% Coil/Unstructured: 56.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 141 Family Scaffolds
PF04828	GFA	2.84
PF13561	adh_short_C2	2.84
PF00578	AhpC-TSA	2.13
PF01872	RibD_C	1.42
PF13416	SBP_bac_8	1.42
PF00248	Aldo_ket_red	1.42
PF04832	SOUL	1.42
PF03976	PPK2	1.42
PF00106	adh_short	1.42
PF13683	rve_3	0.71
PF13817	DDE_Tnp_IS66_C	0.71
PF13230	GATase_4	0.71
PF02030	Lipoprotein_8	0.71
PF10118	Metal_hydrol	0.71
PF07883	Cupin_2	0.71
PF07690	MFS_1	0.71
PF01244	Peptidase_M19	0.71
PF00171	Aldedh	0.71
PF10604	Polyketide_cyc2	0.71
PF12698	ABC2_membrane_3	0.71
PF03358	FMN_red	0.71
PF13328	HD_4	0.71
PF00515	TPR_1	0.71
PF13495	Phage_int_SAM_4	0.71
PF02897	Peptidase_S9_N	0.71
PF14534	DUF4440	0.71
PF13751	DDE_Tnp_1_6	0.71
PF07731	Cu-oxidase_2	0.71
PF00877	NLPC_P60	0.71
PF02798	GST_N	0.71
PF13415	Kelch_3	0.71
PF02826	2-Hacid_dh_C	0.71
PF13360	PQQ_2	0.71
PF06966	DUF1295	0.71
PF03050	DDE_Tnp_IS66	0.71
PF01569	PAP2	0.71
PF04299	FMN_bind_2	0.71
PF06224	HTH_42	0.71
PF05532	CsbD	0.71

COG ID	Name	Functional Category	% Frequency in 141 Family Scaffolds
COG3791	Uncharacterized conserved protein	Function unknown [S]	2.84
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.42
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.42
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	1.42
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.71
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.71
COG3752	Steroid 5-alpha reductase family enzyme	General function prediction only [R]	0.71
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.71
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.71
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.71
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	0.71
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.71
COG2020	Protein-S-isoprenylcysteine O-methyltransferase Ste14	Posttranslational modification, protein turnover, chaperones [O]	0.71
COG1770	Protease II	Amino acid transport and metabolism [E]	0.71
COG1505	Prolyl endopeptidase PreP, S9A serine peptidase family	Amino acid transport and metabolism [E]	0.71
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.71
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.74 %
Unclassified	root	N/A	43.26 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.03 %
Unclassified	root	N/A	43.26 %
Viruses	superkingdom	All Organisms → Viruses	0.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.03 %
Unclassified	root	N/A	43.26 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.26 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.82 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.13 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.71 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.26 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	9.22 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5.67 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.55 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.71 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.71 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.26 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.55 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	3.55 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	2.84 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	1.42 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.71 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.71 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.71 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.26 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	2.84 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.84 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	2.13 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	1.42 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.71 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	0.71 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.71 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.71 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.71 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.71 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.26 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.84 %
Rubrivivax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax	2.13 %
Phenylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	1.42 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.71 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.71 %
Lysobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter	0.71 %
unclassified Xanthomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae	0.71 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	0.71 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.71 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.71 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.71 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.26 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.84 %
unclassified Rubrivivax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → unclassified Rubrivivax	1.42 %
Phenylobacterium kunshanense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium kunshanense	1.42 %
Rubrivivax benzoatilyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → Rubrivivax benzoatilyticus	0.71 %
Rhodanobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → Rhodanobacter denitrificans	0.71 %
Xanthomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	0.71 %
Mesorhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium japonicum	0.71 %
unclassified Lysobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter	0.71 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.71 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.71 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	0.71 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.71 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.26 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.84 %
Rubrivivax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → unclassified Rubrivivax → Rubrivivax sp.	1.42 %
Phenylobacterium kunshanense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium kunshanense	1.42 %
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → Rubrivivax benzoatilyticus → Rubrivivax benzoatilyticus JA2 = ATCC BAA-35	0.71 %
Zhouia	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Zhouia	0.71 %
Mesorhizobium japonicum MAFF 303099	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium japonicum → Mesorhizobium japonicum MAFF 303099	0.71 %
Lysobacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp.	0.71 %
Rhodanobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → Rhodanobacter denitrificans	0.71 %
Xanthomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	0.71 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.71 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	0.71 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.71 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.26 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.84 %
Rubrivivax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → unclassified Rubrivivax → Rubrivivax sp.	1.42 %
Phenylobacterium kunshanense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium kunshanense	1.42 %
Zhouia spongiae	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Zhouia → Zhouia spongiae	0.71 %
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → Rubrivivax benzoatilyticus → Rubrivivax benzoatilyticus JA2 = ATCC BAA-35	0.71 %
Mesorhizobium japonicum MAFF 303099	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium japonicum → Mesorhizobium japonicum MAFF 303099	0.71 %
Lysobacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp.	0.71 %
Rhodanobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → Rhodanobacter denitrificans	0.71 %
Xanthomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	0.71 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.71 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	0.71 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.71 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000241\|BS_KBA_SWE21_205mDRAFT_10021355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	1759	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11032349	Not Available	660	Open in IMG/M
3300001139\|JGI10220J13317_11050971	Not Available	627	Open in IMG/M
3300002961\|JGI11641J44799_10117996	Not Available	744	Open in IMG/M
3300003858\|Ga0031656_10032336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	2154	Open in IMG/M
3300003858\|Ga0031656_10264896	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300003991\|Ga0055461_10052550	Not Available	952	Open in IMG/M
3300003991\|Ga0055461_10166471	Not Available	586	Open in IMG/M
3300004051\|Ga0055492_10092615	Not Available	667	Open in IMG/M
3300004154\|Ga0066603_10245001	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300004157\|Ga0062590_101476180	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300004463\|Ga0063356_103514051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	675	Open in IMG/M
3300004480\|Ga0062592_100024317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	2848	Open in IMG/M
3300004480\|Ga0062592_100622586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	922	Open in IMG/M
3300004643\|Ga0062591_100449548	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300005093\|Ga0062594_103150108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	516	Open in IMG/M
3300005217\|Ga0069005_10238742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	524	Open in IMG/M
3300005617\|Ga0068859_101557140	All Organisms → cellular organisms → Bacteria → Proteobacteria	730	Open in IMG/M
3300005836\|Ga0074470_11312735	Not Available	3156	Open in IMG/M
3300006224\|Ga0079037_100136790	All Organisms → cellular organisms → Bacteria	2124	Open in IMG/M
3300006224\|Ga0079037_100235693	All Organisms → cellular organisms → Bacteria → Proteobacteria	1665	Open in IMG/M
3300006224\|Ga0079037_100293738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	1504	Open in IMG/M
3300006224\|Ga0079037_101044369	Not Available	809	Open in IMG/M
3300006224\|Ga0079037_101669729	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300006224\|Ga0079037_102064703	Not Available	569	Open in IMG/M
3300006224\|Ga0079037_102202871	Not Available	550	Open in IMG/M
3300006224\|Ga0079037_102513408	Not Available	513	Open in IMG/M
3300006844\|Ga0075428_101762712	Not Available	645	Open in IMG/M
3300006845\|Ga0075421_100751814	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300006845\|Ga0075421_101757642	All Organisms → cellular organisms → Bacteria → Proteobacteria	669	Open in IMG/M
3300006847\|Ga0075431_100822704	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300006853\|Ga0075420_100509436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	1040	Open in IMG/M
3300007004\|Ga0079218_10038734	Not Available	2850	Open in IMG/M
3300009075\|Ga0105090_10024206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3754	Open in IMG/M
3300009091\|Ga0102851_10902610	Not Available	953	Open in IMG/M
3300009091\|Ga0102851_11171351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	844	Open in IMG/M
3300009091\|Ga0102851_11199073	Not Available	835	Open in IMG/M
3300009094\|Ga0111539_12508350	Not Available	598	Open in IMG/M
3300009100\|Ga0075418_12714062	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300009111\|Ga0115026_10486059	Not Available	915	Open in IMG/M
3300009111\|Ga0115026_11886615	Not Available	508	Open in IMG/M
3300009148\|Ga0105243_12421467	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300009167\|Ga0113563_10193452	Not Available	2013	Open in IMG/M
3300009167\|Ga0113563_11376882	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300009167\|Ga0113563_13758713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → Rubrivivax benzoatilyticus → Rubrivivax benzoatilyticus JA2 = ATCC BAA-35	514	Open in IMG/M
3300009169\|Ga0105097_10083472	Not Available	1739	Open in IMG/M
3300009170\|Ga0105096_10522668	Not Available	619	Open in IMG/M
3300009179\|Ga0115028_11843615	Not Available	528	Open in IMG/M
3300009610\|Ga0105340_1128731	Not Available	1033	Open in IMG/M
3300009789\|Ga0126307_10423416	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300010403\|Ga0134123_10643221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1027	Open in IMG/M
3300012898\|Ga0157293_10201259	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300012906\|Ga0157295_10132665	Not Available	725	Open in IMG/M
3300012912\|Ga0157306_10120844	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300013308\|Ga0157375_13657341	Not Available	511	Open in IMG/M
3300013315\|Ga0173609_10624920	Not Available	695	Open in IMG/M
3300014261\|Ga0075360_1088089	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300014308\|Ga0075354_1103344	Not Available	599	Open in IMG/M
3300014313\|Ga0075347_1146047	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300014319\|Ga0075348_1038178	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300014322\|Ga0075355_1115877	Not Available	681	Open in IMG/M
3300014323\|Ga0075356_1099613	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300014745\|Ga0157377_11366691	Not Available	557	Open in IMG/M
3300015371\|Ga0132258_12227431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1375	Open in IMG/M
3300018476\|Ga0190274_12558053	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300018481\|Ga0190271_13481236	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300019356\|Ga0173481_10676198	Not Available	554	Open in IMG/M
3300020048\|Ga0207193_1703302	Not Available	667	Open in IMG/M
3300022213\|Ga0224500_10268515	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300022309\|Ga0224510_10197608	Not Available	1199	Open in IMG/M
3300024056\|Ga0124853_1473624	Not Available	1789	Open in IMG/M
(restricted) 3300024062\|Ga0255039_10256511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	740	Open in IMG/M
3300025106\|Ga0209398_1168075	Not Available	505	Open in IMG/M
3300025933\|Ga0207706_10508662	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300025933\|Ga0207706_11635180	Not Available	521	Open in IMG/M
3300026069\|Ga0208539_1021231	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300026350\|Ga0256823_1004222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium kunshanense	1066	Open in IMG/M
3300026373\|Ga0256817_1003726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium kunshanense	1070	Open in IMG/M
3300026485\|Ga0256805_1047916	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300027617\|Ga0210002_1018897	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300027617\|Ga0210002_1055775	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300027683\|Ga0209392_1033037	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Zhouia → Zhouia spongiae	1677	Open in IMG/M
3300027800\|Ga0209800_10295095	Not Available	683	Open in IMG/M
3300027805\|Ga0209229_10221179	Not Available	846	Open in IMG/M
3300027871\|Ga0209397_10123639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → Rhodanobacter denitrificans	1118	Open in IMG/M
3300027877\|Ga0209293_10649218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → unclassified Rubrivivax → Rubrivivax sp.	558	Open in IMG/M
3300027900\|Ga0209253_10392878	Not Available	1055	Open in IMG/M
3300027956\|Ga0209820_1196475	Not Available	563	Open in IMG/M
3300028380\|Ga0268265_12493854	Not Available	523	Open in IMG/M
3300031562\|Ga0310886_10160588	All Organisms → Viruses → Predicted Viral	1192	Open in IMG/M
3300031834\|Ga0315290_11340176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	588	Open in IMG/M
3300031854\|Ga0310904_10693827	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300031908\|Ga0310900_11640923	All Organisms → cellular organisms → Bacteria → Proteobacteria	545	Open in IMG/M
3300031913\|Ga0310891_10350336	All Organisms → cellular organisms → Bacteria → Proteobacteria	530	Open in IMG/M
3300031997\|Ga0315278_10599534	Not Available	1127	Open in IMG/M
3300032000\|Ga0310903_10339425	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300032013\|Ga0310906_10905961	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300032143\|Ga0315292_11378893	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300032143\|Ga0315292_11656881	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300032177\|Ga0315276_10899816	Not Available	944	Open in IMG/M
3300032275\|Ga0315270_10238582	All Organisms → cellular organisms → Bacteria → Proteobacteria	1126	Open in IMG/M
3300032397\|Ga0315287_11802342	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300032516\|Ga0315273_12004436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp.	687	Open in IMG/M
3300032516\|Ga0315273_12045371	Not Available	678	Open in IMG/M
3300032516\|Ga0315273_12640955	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300033413\|Ga0316603_10178002	All Organisms → cellular organisms → Bacteria → Proteobacteria	1789	Open in IMG/M
3300033413\|Ga0316603_11175894	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300033413\|Ga0316603_11510078	Not Available	637	Open in IMG/M
3300033413\|Ga0316603_12124011	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300033416\|Ga0316622_100407125	Not Available	1530	Open in IMG/M
3300033416\|Ga0316622_100664102	Not Available	1203	Open in IMG/M
3300033416\|Ga0316622_100730123	Not Available	1147	Open in IMG/M
3300033416\|Ga0316622_100771488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1115	Open in IMG/M
3300033416\|Ga0316622_100882394	All Organisms → cellular organisms → Bacteria → Proteobacteria	1041	Open in IMG/M
3300033416\|Ga0316622_102314466	Not Available	621	Open in IMG/M
3300033416\|Ga0316622_102951918	Not Available	542	Open in IMG/M
3300033418\|Ga0316625_100446821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → unclassified Rubrivivax → Rubrivivax sp.	997	Open in IMG/M
3300033418\|Ga0316625_101988278	Not Available	571	Open in IMG/M
3300033419\|Ga0316601_100244424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1608	Open in IMG/M
3300033419\|Ga0316601_102625022	Not Available	506	Open in IMG/M
3300033434\|Ga0316613_10429101	Not Available	891	Open in IMG/M
3300033434\|Ga0316613_10662024	Not Available	714	Open in IMG/M
3300033481\|Ga0316600_10656930	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300033481\|Ga0316600_11093770	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300033482\|Ga0316627_101290387	Not Available	727	Open in IMG/M
3300033483\|Ga0316629_10135366	All Organisms → cellular organisms → Bacteria	1466	Open in IMG/M
3300033483\|Ga0316629_10181216	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300033483\|Ga0316629_10274285	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300033487\|Ga0316630_10259511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1315	Open in IMG/M
3300033488\|Ga0316621_10078081	Not Available	1781	Open in IMG/M
3300033488\|Ga0316621_11094525	All Organisms → cellular organisms → Bacteria → Acidobacteria	598	Open in IMG/M
3300033488\|Ga0316621_11141615	Not Available	586	Open in IMG/M
3300033513\|Ga0316628_100906814	Not Available	1167	Open in IMG/M
3300033521\|Ga0316616_103110763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	625	Open in IMG/M
3300033557\|Ga0316617_100531045	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300033557\|Ga0316617_101976953	Not Available	598	Open in IMG/M
3300034052\|Ga0373889_027738	Not Available	836	Open in IMG/M
3300034090\|Ga0326723_0210501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium japonicum → Mesorhizobium japonicum MAFF 303099	862	Open in IMG/M
3300034354\|Ga0364943_0351527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	564	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.82%
Host-Associated	Host-Associated	12.77%
Engineered	Engineered	1.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	45.39%
Aquatic	Environmental → Aquatic	40.43%
Plants	Host-Associated → Plants	12.77%
Wastewater	Engineered → Wastewater	0.71%
Bioremediation	Engineered → Bioremediation	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.97%
Freshwater	Environmental → Aquatic → Freshwater	33.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.51%
Marine	Environmental → Aquatic → Marine	5.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.26%
Sediment	Environmental → Aquatic → Sediment	1.42%
Peat	Environmental → Terrestrial → Peat	0.71%
Floodplain	Environmental → Terrestrial → Floodplain	0.71%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	0.71%
Metal	Engineered → Bioremediation → Metal	0.71%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	28.37%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	15.60%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.77%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.80%
Lake	Environmental → Aquatic → Freshwater → Lake	7.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.09%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.55%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.55%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.84%
Pond	Environmental → Aquatic → Freshwater → Pond	1.42%
Sediment	Environmental → Aquatic → Marine → Sediment	1.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.42%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.42%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.71%
Strait	Environmental → Aquatic → Marine → Strait	0.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.71%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.71%
Mine Water	Engineered → Wastewater → Industrial Wastewater → Mine Water	0.71%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	28.37%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	10.64%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.80%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	7.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.26%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.55%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	2.13%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.13%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.13%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	1.42%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.42%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	1.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.42%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.71%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.71%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.71%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.71%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified	0.71%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	22.70%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	10.64%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	7.09%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	5.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.26%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	3.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.55%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	2.13%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	2.13%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.13%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.13%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	1.42%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	1.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.42%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.71%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.71%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.71%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.71%
Marine	Environmental → Aquatic → Marine → Wetlands → Sediment → Marine	0.71%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.71%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.71%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.71%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.71%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.71%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.71%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.71%
Sediment	Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified → Sediment	0.71%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000241	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBB sample SWE 21_20.5m	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300002961	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300003858	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI	Environmental	Open in IMG/M
3300003991	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqB_D1	Environmental	Open in IMG/M
3300004051	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D2	Environmental	Open in IMG/M
3300004154	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 8	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005217	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailC_D2	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300013315	Sediment microbial communities from Acid Mine Drainage holding pond in Pittsburgh, PA, USA - 1B	Engineered	Open in IMG/M
3300014261	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleC_D1	Environmental	Open in IMG/M
3300014308	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1	Environmental	Open in IMG/M
3300014313	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D1	Environmental	Open in IMG/M
3300014319	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D1	Environmental	Open in IMG/M
3300014322	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1	Environmental	Open in IMG/M
3300014323	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D1	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300022213	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1	Environmental	Open in IMG/M
3300022309	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_4_1	Environmental	Open in IMG/M
3300024056	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300024062 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1	Environmental	Open in IMG/M
3300025106	Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Big Spring (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026069	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D1 (SPAdes)	Environmental	Open in IMG/M
3300026350	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU6	Environmental	Open in IMG/M
3300026373	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 F6	Environmental	Open in IMG/M
3300026485	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 F6	Environmental	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027683	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027800	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 8 (SPAdes)	Environmental	Open in IMG/M
3300027805	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027956	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027975	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034052	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A4.2	Engineered	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
BS_KBA_SWE21_205mDRAFT_100213551	3300000241	Marine	KTAGWRSFGWRYYRDFEPALASIRNEPEFIATFADIARDMARQRTELAARPKDAPLDLPPVN*
ICChiseqgaiiFebDRAFT_110323492	3300000363	Soil	EAERAGWRQLWRYYRGFDPNLASIRNEPEFKAVFADIERDMARQRAELAARPKDAPPDLATVH*
JGI10220J13317_110509712	3300001139	Soil	GCRLLWRYHRDFNPSLASIRNEPEFKAIFADIERDMARQRAALAARPKDAPLDLVDKQ*
JGI11641J44799_101179962	3300002961	Wetland	GWSLERDFVFAFDSIRDEPEFKAIFADIERDMARQRVELAKRPKDGPLDLAPAH*
Ga0031656_100323363	3300003858	Freshwater Lake Sediment	EKAGWRGPFWRYYRDFDPNLASIRNEPEFKAIFADIERDMARQRAELAKRPKDAPLDLGSVR*
Ga0031656_102648962	3300003858	Freshwater Lake Sediment	SDSPDRSYCGWRYHRDFDPNLASIRNEPEFKAVFADIERDMARQRAELAARPKDAPLDLGSVH*
Ga0055461_100525501	3300003991	Natural And Restored Wetlands	PYWRYHRDFDPTLASIREDPEFKAIFADIERDMATQRAELAKRPLDGPLDPGHDQP*
Ga0055461_101664711	3300003991	Natural And Restored Wetlands	GWRGPLWRYYRDFDPNLASIRDEPEFKAVFADIERDIARQRAELAARPKDAPLDLGATN*
Ga0055492_100926151	3300004051	Natural And Restored Wetlands	RAGWRFDWRFCRDLDPAFDSIRDDPEFKAIFADIERDMARQRAELAKRPKDAPLDLAIGN
Ga0066603_102450011	3300004154	Freshwater	GPNWRYYRDFDPNLASIRNEPEFIAIFADIERDMARQRAELAARPKDAPLNLELR*
Ga0062590_1014761801	3300004157	Soil	QAGWRGLWRYYRDFDPKLASIRNEPEFKAVFADIESDMARQRAALAAKPKDAPLDLAATGT*
Ga0063356_1035140511	3300004463	Arabidopsis Thaliana Rhizosphere	TGLRSDWRYYRDFAPELASIRNEPEFKAIFAEIERDMKKQRAALAARPKNAPLVVAATGT
Ga0062592_1000243173	3300004480	Soil	WRRWWPYHRDFDPALASIRDEPEFKAVFADIERDMATQRAALAARPKDAPLDLAATGT*
Ga0062592_1006225861	3300004480	Soil	RGPIWRYYRDHDPELASIRDEPQFKAIFADIERDMSAQLGRLAARPKDAPLDLAAVR*
Ga0062591_1004495482	3300004643	Soil	LSWRYYRDIDPTLDSIRKEPEFKAIFADIERDMARQRAELAKRPKDAKLEL*
Ga0062594_1031501082	3300005093	Soil	GPLWRYYRDHDPELASIRDEPEFKAVFADIERDMSAQLGRLAVRPKDAPLDLAAVR*
Ga0069005_102387422	3300005217	Natural And Restored Wetlands	WRGPIWRYYRDFDPSLASIRNEPEFKAVFADIERDMARQRAELAARPKDAPLDLGGSAN*
Ga0068859_1015571402	3300005617	Switchgrass Rhizosphere	IWRYYRDYDPTFDSIRHEPEFNSVFADLERDMARQRAELAARPNDAPLDLAVAH*
Ga0074470_113127351	3300005836	Sediment (Intertidal)	YYRDHAPSLDSIRNEPEFKAVFADIARDMARQRAELAARPQDAPLNPRAPMT*
Ga0079037_1001367901	3300006224	Freshwater Wetlands	GWRYHRDFDLSLASIRDEPEFKAVFADIERDMARQRAELAARPKDAPLDLGATD*
Ga0079037_1002356931	3300006224	Freshwater Wetlands	GWRSDWRIYRDLDPAFDSIRDDPEFKAIFADIERDMARQRAELAKRPKDAPLDLDPSR*
Ga0079037_1002937383	3300006224	Freshwater Wetlands	WRSFGWRYYRDFDPNLASIRNEPEFNAVFADIERDMARQRAELAKRPKDAPLVNRR*
Ga0079037_1010443692	3300006224	Freshwater Wetlands	AGWRLRWRYARDIDPSLASIRNEPEFKSVFADIERDMARQRAELAARPKDAPLDLDSSR*
Ga0079037_1016697292	3300006224	Freshwater Wetlands	WRGPFWRYARDFDPALASIRDDPEFKAVFADIERDMARQRAELDARPKDAPLDRAIGN*
Ga0079037_1020647032	3300006224	Freshwater Wetlands	SDWRYFRDFDPNLASIRNEPEFKAVFADIERDMARHRAELAKRPKDARLDLGPSR*
Ga0079037_1022028712	3300006224	Freshwater Wetlands	YARDFDPSLASIRNEPEFKSVFADIERDMARQRAELAARPKDAALDLGELRK*
Ga0079037_1025134081	3300006224	Freshwater Wetlands	AGWRLWWRYARDFDPSLASIRNEPEFKSVFADIERDMARQRAELAKRPKDAPLDLGPSR*
Ga0075428_1017627121	3300006844	Populus Rhizosphere	AADAGWRIFWRYARDIDPALASIRNEPEFKAIFSDIERDIARQRAALSQRPKDAPLDVAVVGK*
Ga0075421_1007518142	3300006845	Populus Rhizosphere	YHRDIDPNLDSIRNEPEFKAVFADIERDMARQRAALAARPKDAPLELAGTGT*
Ga0075421_1017576422	3300006845	Populus Rhizosphere	GWRGPLLRYYRDHDANLASIRATPEFRAVFADIERDMAQQRARLAARRKDAPLELSDITH
Ga0075431_1008227041	3300006847	Populus Rhizosphere	RYHRDFDANLASIRDQLEFKAVFADIQRDMDRQRAEVAARPKGAPLDLLPIR*
Ga0075420_1005094361	3300006853	Populus Rhizosphere	WRYYRDFDPNLASIRNDPEFKAVFADIERDMAKQRARLAARPKDAPLELTDAST*
Ga0079218_100387342	3300007004	Agricultural Soil	VTDTPAERGAESWHGPLWRYHRDVDPNLASIRRATEFKAIFADIKRDMAQQRARLAVRSKDAPLDLGDKQ*
Ga0105090_100242061	3300009075	Freshwater Sediment	PSWRFFRDVDPALASIRDEPEFKAVFADIERDMALQRAKPAKLPKDAPLDLAAGN*
Ga0102851_109026102	3300009091	Freshwater Wetlands	RYYRDFEPTLASIRGEPEFIAIFADLERDMERQRAELAKRPKDAPLD*
Ga0102851_111713512	3300009091	Freshwater Wetlands	GWRGPTWRYYRDIDPNLASIRDEPEFKAIFADIERDMARQRAELAARPKNAPLDLAPGH*
Ga0102851_111990731	3300009091	Freshwater Wetlands	RAGWRSIWRYHRDLDPAFDSIRDDPEFRAIFTDIERDMTRQRAGLAKRPKDAPLDLAPVH
Ga0111539_125083501	3300009094	Populus Rhizosphere	GPIWRYYRDYDPTFDSIRHEPEFNSVFADLERDMARQRAELAARPKDAPLDLAVAH*
Ga0075418_127140622	3300009100	Populus Rhizosphere	HYRDFDPALDSIRNEPEFKAIFADIERDMARQRAALAARPKDAPLDLAATGT*
Ga0115026_104860592	3300009111	Wetland	TAGWRSFAWRYYRDFEPTLASIRGEPEFIAIFADLERDMERQRAELAKRPKDAPLD*
Ga0115026_118866151	3300009111	Wetland	VGIDRDLEPAFDSIRDEPEFKAIFADIERDMARQRAELAKRPKDAPLDLAGTAPAGSAN*
Ga0105243_124214672	3300009148	Miscanthus Rhizosphere	EAAKAGWRGQIWRYFRAFDPALSSIRNEPEFKSVFADIERDMAQQRARLAARPKDAPLELTEASR*
Ga0113563_101934525	3300009167	Freshwater Wetlands	RYYRDFDPNLASIRNEPEFKAVFADIERDMARQRAELAKRPKDAPLDLGVGE*
Ga0113563_113768822	3300009167	Freshwater Wetlands	FGWRYYRDFEPTLASIRGEPGFQAIFAEIERDMARQRAALASRPKDAPLGPTAVR*
Ga0113563_137587131	3300009167	Freshwater Wetlands	WRGPFWRYARDFDPALASIRDDPEFKAIFADVERDMARQRAELAARPKDAPLDPASGH*
Ga0105097_100834724	3300009169	Freshwater Sediment	LREAAQAGWRGPLWHYYRDLDPNLDSIRDEPDFKAVFADIERDMARQRAELAKRPKDAPLDLDPSR*
Ga0105096_105226681	3300009170	Freshwater Sediment	GPLWRFYRDFDASLASIRNTPEFRAVFADIERDMARQRAILAAHPTVAAVDLRVGF*
Ga0115028_118436151	3300009179	Wetland	RGRGWRYHRDFDLSLASIRDEPEFKAVFADIERDMARQRAELAKRPKDAPVDLDPER*
Ga0105340_11287312	3300009610	Soil	LREAADAGWRSWWRYFRDFDPALASIRNEPEFKAVFADIERDMAKQRAALAARPKDAPLELTDAR*
Ga0126307_104234163	3300009789	Serpentine Soil	GWWVKSLAYHRDLDPNLASIRNEPEFKAIFADIERDMARQRAALAARPKDAPLDLQATGT
Ga0134123_106432211	3300010403	Terrestrial Soil	WRGPLWRYYRDHDPELASIRDEPEFKAIFANIERDMSTQLGRLAARPKDAPLDLAAVR*
Ga0157293_102012592	3300012898	Soil	LREAEQAGWRGLWRYYRDFDPKLASIRNEPEFKAVFADIESDMARQRAALAAKPKDAPLDLAAGGS*
Ga0157295_101326652	3300012906	Soil	LREAAKAGWRGQIWRYFRDFDPALASIRNEQEFKAVFADIERDMAKQRARLAARPKDAPLELMDAR*
Ga0157306_101208441	3300012912	Soil	YYRDFDPKLASIRNEPEFKAIFADIERDMAQQRARLAARPKDAPLDLTDASR*
Ga0157375_136573411	3300013308	Miscanthus Rhizosphere	VAARDGWRGSFWRYYRDFDPALASIRNNAEFKAVFADIERDIAKQRAALAARPKDAPLDLAATGT*
Ga0173609_106249202	3300013315	Sediment	EAVKTGWRIRWRYYRDFDPALAAIRNDPEFKAIFADIERDMAAQRARLGARPKDAPVNLAPAQ*
Ga0075360_10880891	3300014261	Natural And Restored Wetlands	LRYYRDLDPTLASIRNEPEFKAVFADIKRDMARQRAELAARPRDVPLNLGSVH*
Ga0075354_11033442	3300014308	Natural And Restored Wetlands	GWRSLWRYYRDFDPDLDSIRSEPEFKAVFADIERDMARQRSELAARPKDAPLDLKTTPN*
Ga0075347_11460472	3300014313	Natural And Restored Wetlands	AGWRSEWRFYRDIDLAFDSVRDDPEFKAIFADIERDMARQRAELAQRPKDAPLNLGAAD*
Ga0075348_10381781	3300014319	Natural And Restored Wetlands	WRFYRDIDLAFDSVRDDPEFKAIFADIERDMARQRAELAQRPKDAPLNLGAAD*
Ga0075355_11158773	3300014322	Natural And Restored Wetlands	AGWRGWFWRYYRDFDPNLASIRKEPEFKAIFADIERDMARQRAELAARPKGAPLDPAAAY
Ga0075356_10996131	3300014323	Natural And Restored Wetlands	AQRAGWRGGLWSLRYYRDLDPTLASIRNEPEFKAVFADIKRDMARQRAELAARPRDVSLNLGSVH*
Ga0157377_113666912	3300014745	Miscanthus Rhizosphere	WRLRWRFYRDLDPNLAPIRTDPDFKTIFADIERDMAQQRGRLATRQDAPLDLPAVR*
Ga0132258_122274311	3300015371	Arabidopsis Rhizosphere	REAERAGWRGPIWRYYRDHDPELASIRNEPEFKAVFADIERDMAQQRAALAARPKDARLDLAAVH*
Ga0190274_125580531	3300018476	Soil	RAGWRYPRDADPNLASIRNDPEFKAIFVDIEHDMAQQRARLAARPKDAPLELTEASR
Ga0190271_134812362	3300018481	Soil	EAQRAGWRTWWRYDRDWNPNFESIRNEPEFKAVFADIERDMAKQRAALAARPKDAPLDLATTGT
Ga0173481_106761981	3300019356	Soil	LRNAAQAGWRLSWRYYRDIDPTLDSIRKEPEFKAIFADSERDMARQRAELAKRPKDAKLE
Ga0207193_17033022	3300020048	Freshwater Lake Sediment	MLQQAQQSGWRGPLWRYYRDFDPVLAPVRNDAEFKAVFAAIERDMARQRAELAARPPGVP
Ga0224500_102685152	3300022213	Sediment	TWRFFRDVDPALASIRGEPEFKAVFADIERDMALQRAELAKLPKDAPRDLAGD
Ga0224510_101976081	3300022309	Sediment	REAARAGWRGAWRYYRDFDPNLASIRNKPEFKAVFADIERDMARQRAELAQRPKDAPLDLGGPAK
Ga0124853_14736241	3300024056	Freshwater Wetlands	MWRYHRDFDPALASVRNEPEFKAVFADIERDMARQRAELAKRPKGAPLDLDPHVETQRTMRAASTP
(restricted) Ga0255039_102565111	3300024062	Seawater	FWRYQRDLSPALDSIRNEPEFKAIFADIEQDMNRQRAALAARPEGSTLDLDSWQIAIQEARITER
Ga0209398_11680752	3300025106	Groundwater	GWRGPYWRYYRDFDPTLASIRSDPEFKAIFDEIERDVAQQRDKLAARPKNAPLPIEGAD
Ga0207706_105086621	3300025933	Corn Rhizosphere	LRAAEQAGWRGPLWRYYRDHDPSLDSIRNEPEFKAVSADIVRDMARQRAALAARPKDAPLELTDASR
Ga0207706_116351802	3300025933	Corn Rhizosphere	LRDAHEAGCRLLWRYHRDFNPSLASIRNEPEFKAIFADIERDMARQRAALAARPKDAPLELTSESE
Ga0208539_10212312	3300026069	Natural And Restored Wetlands	LWAAERAGWRFDWRFCRDLDPAFDSIRDDPEFKAIFADIERDMARQRAELAQRPKDAPLNLGAAD
Ga0256823_10042221	3300026350	Sediment	EAESVGWRGVLWRYFRDYDAALESIRDEAEFRAAFADIESDMEQQRASLAARPEDAPLDLGEEW
Ga0256817_10037261	3300026373	Sediment	LREAESVGWRGVLWRYFRDYDAALESIRDEAEFRAVFAEIDSDMEQQRASLAARPEDAPLDLGEEW
Ga0256805_10479162	3300026485	Sediment	LREAAKAGWRDGWRYFRDIDPKLVSIRDDPEFRAVFADIERDMARQRAELAKRPKNAPLSVEAAAR
Ga0210002_10188971	3300027617	Arabidopsis Thaliana Rhizosphere	GWRGPAWRYYRDFDPALASIRNEPEFKAVFADIERDMARQRARLAARPKDAPLEWAATGT
Ga0210002_10557752	3300027617	Arabidopsis Thaliana Rhizosphere	GWRGPLWRYYRDHDANLASIRDTPEFKAVFADIERDMAQQRARLAARPKDAPLDLAATGR
Ga0209392_10330371	3300027683	Freshwater Sediment	EQAGWRGPSWRFSRDVDPVLASIRDEPEFKAVFADIERDMALQRAKLAKLPKDAPLDLAG
Ga0209800_102950952	3300027800	Freshwater	WRGPNWRYYRDFDPNLASIRNEPEFIAIFADIERDMARQRAELAARPKDAPLNLELR
Ga0209229_102211791	3300027805	Freshwater And Sediment	LWWRYARDFDPSLASIRNEPEFKSVFADIERDMARQRAELAKRPKDAPLDLDPSR
Ga0209397_101236391	3300027871	Wetland	SDWRFYRDLDPAFDSIRDDPEFKAIFEDIERDMARQRAELAKRPKDAPFDLAIGN
Ga0209293_106492181	3300027877	Wetland	ALRALQQASSAGWRGFAWRYYRDFEPTLVSIRGEPEFQTIFADIERDLARQRAVLASRPKDEPLDLAAAR
Ga0209253_103928782	3300027900	Freshwater Lake Sediment	RYLWRFHRDDDPNLAFVRDDPQFKAVFADIERDMAAQLARLAARPRNAPPDFAPAH
Ga0209820_11964751	3300027956	Freshwater Sediment	PSWRFFRDVDPVLASIRDEPEFKAVFADIERDMALQRAKLAKPPKDAPLDLAGD
Ga0209391_101736001	3300027975	Freshwater Sediment	AGWRRGWRYARDFDPSLVSIRNEPEFNSIFADIERDMARQRAALAALPKL
Ga0268265_124938542	3300028380	Switchgrass Rhizosphere	QAGWRGMYWRYYSDFDPNLASIRNEPEFKAIFADIERDMARQRAALAARPKDAPLELTSESE
Ga0310886_101605882	3300031562	Soil	FWRYFRDFDPALSSIRNEPEFKAIFADIERDMARQRAALAARPKDAPLELTSESE
Ga0315290_113401761	3300031834	Sediment	YWGYARDFDPSLASIRNDPEFKAVFADIERDMARQRAELAAKPQDAPLDTGLVH
Ga0310904_106938271	3300031854	Soil	QIWRYFRDFDPALSSIRNEPEFKSVFADIERDMAQQRARLAACPKDAPLELTEASR
Ga0310900_116409232	3300031908	Soil	EAEAAGWRGPYWHYYRDFDPNLASIRDEPEFKAVFADIERDMAQQRARLAAHPKDDPLELTEASR
Ga0310891_103503362	3300031913	Soil	QAGWRGPIWRYYRDHDPTFDSIRNEPEFKAVFADLERDMTQQRASLAARPKDAPLELTEASR
Ga0315278_105995341	3300031997	Sediment	RAGWRGGLWPLRYYRDHDPALASIRNEPAFKAVFADIARDMARQRAELAARPKDAPLNLGAP
Ga0310903_103394252	3300032000	Soil	MPAGSWWRYFRDFDPILASIRNEPEFKAVFADIERDMAQQRARLVARPKDRPLELTEASK
Ga0310906_109059611	3300032013	Soil	AEQAGWRGPIWRYYRDHDPTFDSIRNEPEFKAVFADLERDMTQQRASLAARPKDAPLELTEASR
Ga0315292_113788932	3300032143	Sediment	GWRAGWRDARDFDPNLASIRNEPEFKAVFADIERDMARQRAELAARPKDAPRDLGSVH
Ga0315292_116568811	3300032143	Sediment	GRAWRYYRDFDPALASIRNEPEFKAVFADIERDMARQRADLAARPKDAPLDLGEPRK
Ga0315276_108998162	3300032177	Sediment	LWPLRYYRDHDPALASIRNEPAFKAVFADIARDMARQRAELAARPKDAKLAIPTASTQ
Ga0315270_102385822	3300032275	Sediment	LREAEKAGWRLFWRYYRDLAPSLSSIRNEPEFKAVFADIERDMARQRAELAARPKNAPLDFTTPVH
Ga0315287_118023421	3300032397	Sediment	LWPLRYYRDHDPALDSIRSEPDFKAVFADIERDMTRQRAELAKRPKDAPLDLGSVH
Ga0315273_120044362	3300032516	Sediment	WQYRRDFDPAFDSIRDEPEFKAIFADIERDMARQRAELAKRPKDAPLDLGVGE
Ga0315273_120453712	3300032516	Sediment	WRGGLWSLRYYRDHDPALASIRNEPAFKAVFADIARDMARQRAELAARPKDAKLAIPTASTQ
Ga0315273_126409551	3300032516	Sediment	LRYYRDVDPSLDSIRNEPEFKAVFADIARDMARQRAELAKRSKDAPLDLAAVR
Ga0316603_101780021	3300033413	Soil	ALQDAEKAGWRLWWRYARDFDPSLASIRNEPEFKSIFADIERDMARQRAELAARPKGAALELVPSR
Ga0316603_111758942	3300033413	Soil	AEREGWRGPFWRYARDFDPALASIRDEPEFKAIFADIERDMARQRAELAKRPKDAPLNLGELRK
Ga0316603_115100782	3300033413	Soil	WRFVRDLDLTLASIRDDPEFRAIFADIERDMARQRAELAKRPKDAPLDLDPSR
Ga0316603_121240111	3300033413	Soil	RRTWRYVRDIDPALASIRDEPEFKAVFTDIERDMARQRAELAARPKDAPLDLGSAD
Ga0316622_1004071252	3300033416	Soil	WRGPFWRYARDFDPALASIRDDPEFKAVFADIERDMTRQRAERAARP
Ga0316622_1006641021	3300033416	Soil	NAEREGWRGPFWRYARDFDPALVSIRDDPEFKAIFADIEHDMARQRAELAARQKGAPLDPAPGH
Ga0316622_1007301231	3300033416	Soil	EKASWRSDWRYFRDFDPNLASIRNEPEFKAVFADIERDMARHRAELAKRPKDARLDLGPS
Ga0316622_1007714881	3300033416	Soil	EAEKAGWRGPYWRYYRDFDPNLASIRNEPEFKAVFADIERDMARQRAELAKRPKDAPLDLGDSRK
Ga0316622_1008823942	3300033416	Soil	AEKAGWRLWWRYARDFDPSLASIRNEPEFKSIFADVERDMARQRAELAARPKGAPLDLTPSR
Ga0316622_1023144661	3300033416	Soil	WRFTWRFVRDLDLTLASIRDDPEFRAIFADIERDMARQRAELAKRPKDAPLDLDPSR
Ga0316622_1029519182	3300033416	Soil	EKAGWRLWWRYARDFDPSLASIRNEPEFKSVFADIERDMARQRAELAARPKDAALDLGELRK
Ga0316625_1004468212	3300033418	Soil	ALQQASSAGWRGFAWRYYRDFEPTLVSIRGEPEFQTIFADIERDLARQRAVLASRPKDEPLDLAAAR
Ga0316625_1019882781	3300033418	Soil	EKAGWRLWWRYARDFDPSLASIRNEPEFKSVFADIERDMARQRAELAARPKDAPLDRGELRK
Ga0316601_1002444242	3300033419	Soil	EAEKAGWRGPFWRYYRDFDPNLASIRNEPEFKAVFADIERDMARQRAELAARPQDAPLDLGDSRK
Ga0316601_1026250221	3300033419	Soil	WRSFAWRYYRDFEPTLASIRGEPEFIAVFADIERDMELQRAELARRPKDAPLD
Ga0316613_104291012	3300033434	Soil	RGPFWRYARDFDPALASIRDDPEFKAVFADIERDMARQRAELAARPKDAPLDPASGH
Ga0316613_106620242	3300033434	Soil	AALRNAEREGWRGPFWRYARDFDPALASIRDDPEFKAVFADIERDMTRQRAERAARP
Ga0316600_106569301	3300033481	Soil	GWRSDWRFYRDIDLAFDSVRDDPEFKAIFADIERDMARQRAELAKRPKDAPLDLDPSR
Ga0316600_110937702	3300033481	Soil	EAEKAGWCSDWRYYRDFDPNLASIRDEPEFKAVFADIERDMARQRAALAARPTNAPLDVATTH
Ga0316627_1012903871	3300033482	Soil	RAGWRYHWRNYRDFTPALASIRNDPEFKAVFADIERDMARQRAELAARPKDAPLDLAPAR
Ga0316629_101353661	3300033483	Soil	NAEREGWRGPFWRYARDFDPALASIRDDPEFKAVFADIERDMARQRAELAARPKDAPLDPASGH
Ga0316629_101812161	3300033483	Soil	YYRDFEPTLASIRGEPEFRAIFADIERDVARQRAALAARPKDSPLDPTAAR
Ga0316629_102742851	3300033483	Soil	LREAEQVGWRGPFWRYYRDFDPNLASIRDEPEFKDVFADIEHDMARQRAELAKRPKDAPLDLGESRK
Ga0316629_117599861	3300033483	Soil	QLLREAERAGWRGPYWRYHRDFDPVLAPIRDHPESKAVFADIERDMALQRAAP
Ga0316630_102595113	3300033487	Soil	GWRYHRDFDLSLASIRDEPEFKAVFADIERDMARQRAELAARPKDAPLDLGATD
Ga0316621_100780813	3300033488	Soil	AWRYYRDIDPNLASIRDDPEFKAIFADIERDMARQRAELAKRPKDAPLDLGASR
Ga0316621_110945252	3300033488	Soil	SFGWRYYRDFDPNLASIRNEPEFNAVFADIERDMARQRAELAKRPKDAPLVNRR
Ga0316621_111416151	3300033488	Soil	EGWRGPFWRYARDFDPALASIRDDPEFKAVFADIERDMARQRAELAARPKDAPLDPASGH
Ga0316628_1009068142	3300033513	Soil	LQQASSAGWRGFGWRYYRDFEPTLASIRGEPGFKAIFADIERDVARQRAALAARPKDAPLDPTAAR
Ga0316616_1031107631	3300033521	Soil	DAEKASWRSDWRYFRDFDPNLASIRNEPEFKAVFADIERDMAKQRAELASRRKDAPVDLKEVRE
Ga0316617_1005310452	3300033557	Soil	RYARDFDPALASIRDDPEFKAVFADIERDMARQRAELAARPKDAPLDLAIGN
Ga0316617_1019769531	3300033557	Soil	GWRSDWRFYRDIDLAFDSIRDDPEFKAIFEDIERDMARQRADLAKRPKDAPLGLAIGN
Ga0373889_027738_671_835	3300034052	Sediment Slurry	YVQDFDATLESIRDEPEFRAIFADIERDMARQRAAIAARPKDAPLDLGERWWNR
Ga0326723_0210501_2_181	3300034090	Peat Soil	GWRSLWRYYRDFDPELDSIRNEPEFKAVFADIERDMARQRAELAARPKDAPLDLETTSN
Ga0364943_0351527_1_183	3300034354	Sediment	GWRGPIWRYYRDHDPELASIRNEPEFKAIFADIERDMAKQRAALAARPKDAPLDLAATGT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters