Metagenome / Metatranscriptome Family F053348

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F053348
Family Type	Metagenome / Metatranscriptome
Number of Sequences	141
Average Sequence Length	83 residues
Representative Sequence	AVRDMLERVILAGYRNTWLLPAGAPDRLLAAEALTAEHGLGASTAAQEKAVVRATLAQVRDRLATWDIALPHVDHPELGRA
Number of Associated Samples	124
Number of Associated Scaffolds	141

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.71 %
% of genes near scaffold ends (potentially truncated)	97.16 %
% of genes from short scaffolds (< 2000 bps)	90.78 %
Associated GOLD sequencing projects	117
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (10.638 % of family members)
Environment Ontology (ENVO)	Unclassified (30.496 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.227 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.04% β-sheet: 3.67% Coil/Unstructured: 52.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 141 Family Scaffolds
PF11583	AurF	11.35
PF00941	FAD_binding_5	7.80
PF03450	CO_deh_flav_C	4.26
PF02738	MoCoBD_1	2.13
PF01799	Fer2_2	1.42
PF00398	RrnaAD	0.71
PF01402	RHH_1	0.71
PF11953	DUF3470	0.71
PF01315	Ald_Xan_dh_C	0.71

COG ID	Name	Functional Category	% Frequency in 141 Family Scaffolds
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	59.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.70 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	59.57 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	17.02 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	59.57 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	17.02 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	17.02 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	4.96 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	17.02 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4.96 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003347\|JGI26128J50194_1007918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	682	Open in IMG/M
3300004058\|Ga0055498_10077869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	636	Open in IMG/M
3300005332\|Ga0066388_107435913	All Organisms → cellular organisms → Bacteria → Proteobacteria	550	Open in IMG/M
3300005345\|Ga0070692_10191910	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1191	Open in IMG/M
3300005354\|Ga0070675_101219128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	693	Open in IMG/M
3300005406\|Ga0070703_10159331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	855	Open in IMG/M
3300005437\|Ga0070710_10136332	All Organisms → cellular organisms → Bacteria	1501	Open in IMG/M
3300005439\|Ga0070711_100429696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1078	Open in IMG/M
3300005451\|Ga0066681_10866190	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	543	Open in IMG/M
3300005458\|Ga0070681_10129719	All Organisms → cellular organisms → Bacteria	2453	Open in IMG/M
3300005458\|Ga0070681_11618255	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300005459\|Ga0068867_100607484	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	955	Open in IMG/M
3300005471\|Ga0070698_100418679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1274	Open in IMG/M
3300005471\|Ga0070698_101684139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	587	Open in IMG/M
3300005518\|Ga0070699_100427492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1199	Open in IMG/M
3300005536\|Ga0070697_100041103	All Organisms → cellular organisms → Bacteria → Proteobacteria	3741	Open in IMG/M
3300005536\|Ga0070697_101828141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	543	Open in IMG/M
3300005540\|Ga0066697_10558163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	641	Open in IMG/M
3300005546\|Ga0070696_100225216	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300005546\|Ga0070696_100658079	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	850	Open in IMG/M
3300005547\|Ga0070693_100209136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1272	Open in IMG/M
3300005549\|Ga0070704_100286315	All Organisms → cellular organisms → Bacteria	1367	Open in IMG/M
3300005553\|Ga0066695_10081777	All Organisms → cellular organisms → Bacteria	1963	Open in IMG/M
3300005577\|Ga0068857_102121300	All Organisms → cellular organisms → Bacteria → Proteobacteria	551	Open in IMG/M
3300005578\|Ga0068854_100274458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1355	Open in IMG/M
3300005616\|Ga0068852_102617536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	524	Open in IMG/M
3300005713\|Ga0066905_100577821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	948	Open in IMG/M
3300005713\|Ga0066905_100891359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	778	Open in IMG/M
3300005841\|Ga0068863_100875983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	897	Open in IMG/M
3300005879\|Ga0075295_1025209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	720	Open in IMG/M
3300006041\|Ga0075023_100137009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	888	Open in IMG/M
3300006237\|Ga0097621_102193966	All Organisms → cellular organisms → Bacteria → Proteobacteria	528	Open in IMG/M
3300006578\|Ga0074059_11519743	All Organisms → cellular organisms → Bacteria → Proteobacteria	566	Open in IMG/M
3300006755\|Ga0079222_12023507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	567	Open in IMG/M
3300006804\|Ga0079221_10348070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	893	Open in IMG/M
3300006852\|Ga0075433_11422351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	600	Open in IMG/M
3300006854\|Ga0075425_100122937	All Organisms → cellular organisms → Bacteria	2962	Open in IMG/M
3300006871\|Ga0075434_100746796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	995	Open in IMG/M
3300006871\|Ga0075434_101645481	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300006903\|Ga0075426_10867646	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300006954\|Ga0079219_10027651	All Organisms → cellular organisms → Bacteria	2198	Open in IMG/M
3300009093\|Ga0105240_12387443	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	547	Open in IMG/M
3300009098\|Ga0105245_10693881	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1051	Open in IMG/M
3300009098\|Ga0105245_12350294	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	587	Open in IMG/M
3300009177\|Ga0105248_10244788	All Organisms → cellular organisms → Bacteria	2019	Open in IMG/M
3300009553\|Ga0105249_11153766	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	845	Open in IMG/M
3300010043\|Ga0126380_12109494	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	519	Open in IMG/M
3300010046\|Ga0126384_10487296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1060	Open in IMG/M
3300010046\|Ga0126384_10972186	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	771	Open in IMG/M
3300010360\|Ga0126372_10673311	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1005	Open in IMG/M
3300010371\|Ga0134125_11717220	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	683	Open in IMG/M
3300010397\|Ga0134124_10869611	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	906	Open in IMG/M
3300010397\|Ga0134124_11772907	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	651	Open in IMG/M
3300010398\|Ga0126383_11396846	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	790	Open in IMG/M
3300010398\|Ga0126383_11765023	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	707	Open in IMG/M
3300010868\|Ga0124844_1075392	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1250	Open in IMG/M
3300011119\|Ga0105246_10393332	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1149	Open in IMG/M
3300011270\|Ga0137391_11365246	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	555	Open in IMG/M
3300011410\|Ga0137440_1030155	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	980	Open in IMG/M
3300012034\|Ga0137453_1083187	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	621	Open in IMG/M
3300012096\|Ga0137389_10669228	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	892	Open in IMG/M
3300012203\|Ga0137399_10008577	All Organisms → cellular organisms → Bacteria → Proteobacteria	5960	Open in IMG/M
3300012354\|Ga0137366_10124359	All Organisms → cellular organisms → Bacteria	1947	Open in IMG/M
3300012360\|Ga0137375_10490222	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1049	Open in IMG/M
3300012361\|Ga0137360_10109369	All Organisms → cellular organisms → Bacteria	2131	Open in IMG/M
3300012361\|Ga0137360_11352222	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	614	Open in IMG/M
3300012910\|Ga0157308_10384708	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	540	Open in IMG/M
3300012918\|Ga0137396_11277784	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	511	Open in IMG/M
3300012922\|Ga0137394_10197191	All Organisms → cellular organisms → Bacteria → Proteobacteria	1719	Open in IMG/M
3300012923\|Ga0137359_11540674	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	553	Open in IMG/M
3300012925\|Ga0137419_11399153	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	590	Open in IMG/M
3300012927\|Ga0137416_12235770	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	503	Open in IMG/M
3300012930\|Ga0137407_10025415	All Organisms → cellular organisms → Bacteria	4531	Open in IMG/M
3300012944\|Ga0137410_11134656	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	671	Open in IMG/M
3300012984\|Ga0164309_10880965	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	728	Open in IMG/M
3300012986\|Ga0164304_10291258	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1114	Open in IMG/M
3300013306\|Ga0163162_10377708	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300013306\|Ga0163162_12676565	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	574	Open in IMG/M
3300015371\|Ga0132258_10273491	All Organisms → cellular organisms → Bacteria	4141	Open in IMG/M
3300015372\|Ga0132256_102263448	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	647	Open in IMG/M
3300015373\|Ga0132257_102725472	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	644	Open in IMG/M
3300015373\|Ga0132257_102975442	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	617	Open in IMG/M
3300015374\|Ga0132255_102822722	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	743	Open in IMG/M
3300017930\|Ga0187825_10196521	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	725	Open in IMG/M
3300017936\|Ga0187821_10085102	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1155	Open in IMG/M
3300017939\|Ga0187775_10045181	All Organisms → cellular organisms → Bacteria	1323	Open in IMG/M
3300017973\|Ga0187780_11286952	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	537	Open in IMG/M
3300018074\|Ga0184640_10432698	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	588	Open in IMG/M
3300018422\|Ga0190265_10182196	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2092	Open in IMG/M
3300018429\|Ga0190272_11464402	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	691	Open in IMG/M
3300018482\|Ga0066669_11834890	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	562	Open in IMG/M
3300019361\|Ga0173482_10792370	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	501	Open in IMG/M
3300019886\|Ga0193727_1091897	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	906	Open in IMG/M
3300020002\|Ga0193730_1074700	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	962	Open in IMG/M
3300025315\|Ga0207697_10419694	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	594	Open in IMG/M
3300025322\|Ga0209641_10715947	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	683	Open in IMG/M
3300025913\|Ga0207695_10267255	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1606	Open in IMG/M
3300025916\|Ga0207663_11102442	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	638	Open in IMG/M
3300025922\|Ga0207646_11626512	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	556	Open in IMG/M
3300026018\|Ga0208418_1040884	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	503	Open in IMG/M
3300026023\|Ga0207677_10061663	All Organisms → cellular organisms → Bacteria	2598	Open in IMG/M
3300026121\|Ga0207683_11630641	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	594	Open in IMG/M
3300026285\|Ga0209438_1049464	All Organisms → cellular organisms → Bacteria	1386	Open in IMG/M
3300026327\|Ga0209266_1300827	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	504	Open in IMG/M
3300026360\|Ga0257173_1021152	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	817	Open in IMG/M
3300026371\|Ga0257179_1043029	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	576	Open in IMG/M
3300026371\|Ga0257179_1057355	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	514	Open in IMG/M
3300026376\|Ga0257167_1066388	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	563	Open in IMG/M
3300026514\|Ga0257168_1065445	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	801	Open in IMG/M
3300026515\|Ga0257158_1021789	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1080	Open in IMG/M
3300027395\|Ga0209996_1001111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3205	Open in IMG/M
3300027617\|Ga0210002_1065305	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	638	Open in IMG/M
3300027651\|Ga0209217_1068215	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1048	Open in IMG/M
3300027695\|Ga0209966_1012620	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1554	Open in IMG/M
3300027725\|Ga0209178_1319326	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	575	Open in IMG/M
3300027765\|Ga0209073_10496232	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	514	Open in IMG/M
3300028047\|Ga0209526_10227396	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1284	Open in IMG/M
3300028380\|Ga0268265_11975568	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	590	Open in IMG/M
3300028381\|Ga0268264_10193635	All Organisms → cellular organisms → Bacteria	1855	Open in IMG/M
3300028592\|Ga0247822_10489561	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	972	Open in IMG/M
3300028596\|Ga0247821_10442094	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	818	Open in IMG/M
3300028787\|Ga0307323_10338529	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	539	Open in IMG/M
3300028809\|Ga0247824_10126356	All Organisms → cellular organisms → Bacteria	1362	Open in IMG/M
3300028824\|Ga0307310_10338834	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	738	Open in IMG/M
3300030336\|Ga0247826_10178407	All Organisms → cellular organisms → Bacteria	1431	Open in IMG/M
3300031231\|Ga0170824_118554400	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	649	Open in IMG/M
3300031446\|Ga0170820_10041647	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	879	Open in IMG/M
3300031720\|Ga0307469_11633418	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	620	Open in IMG/M
3300031754\|Ga0307475_10449474	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1036	Open in IMG/M
3300031820\|Ga0307473_11453448	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	518	Open in IMG/M
3300031949\|Ga0214473_12404877	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	502	Open in IMG/M
3300032012\|Ga0310902_11070430	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	563	Open in IMG/M
3300032174\|Ga0307470_10526039	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	868	Open in IMG/M
3300032180\|Ga0307471_100598447	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300032180\|Ga0307471_100634508	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1229	Open in IMG/M
3300032180\|Ga0307471_101040414	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	985	Open in IMG/M
3300032180\|Ga0307471_101381367	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	865	Open in IMG/M
3300033004\|Ga0335084_10241005	All Organisms → cellular organisms → Bacteria	1875	Open in IMG/M
3300033475\|Ga0310811_10255502	All Organisms → cellular organisms → Bacteria	2069	Open in IMG/M
3300033501\|Ga0326732_1013790	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300034257\|Ga0370495_0225912	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	608	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.18%
Host-Associated	Host-Associated	24.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.21%
Plants	Host-Associated → Plants	24.82%
Aquatic	Environmental → Aquatic	4.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.93%
Sediment	Environmental → Aquatic → Sediment	2.84%
Freshwater	Environmental → Aquatic → Freshwater	1.42%
Marine	Environmental → Aquatic → Marine	0.71%
Peat	Environmental → Terrestrial → Peat	0.71%
Roots	Host-Associated → Plants → Roots	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.23%
Loam	Environmental → Terrestrial → Soil → Loam	17.02%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.51%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.84%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.42%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.42%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.71%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.71%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.06%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.51%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.26%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.26%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.55%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.84%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.42%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.71%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.71%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.71%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.71%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.55%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.84%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.84%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.13%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.13%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.13%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.13%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.42%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.42%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.42%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.42%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.71%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.71%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.71%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.71%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.71%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.71%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003347	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM	Host-Associated	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005879	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011410	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT222_2	Environmental	Open in IMG/M
3300012034	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT526_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026018	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300027395	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033501	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF12FN SIP fraction	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26128J50194_10079182	3300003347	Arabidopsis Thaliana Rhizosphere	QRHVLFAWTLLGDRLPGLDAAARAAVGATVRDMLERVILAGYRNTWLLPAEARGPLLAAEALTAQHGLGASTVAQEQAVVRATLAQVRERLAGWNVTLPHVDHPELGRA*
Ga0055498_100778691	3300004058	Natural And Restored Wetlands	LPAEAREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLAGWNVTLPHIDHPELGRA*
Ga0066388_1074359131	3300005332	Tropical Forest Soil	DAAGRARVEEAVRAMLGRVILAGYRNTWLLPAGSRDTWLHAEAETAARGLGASTADEERSAFRATIAQVRERLAVWGVELPRAIHPELGEV*
Ga0070692_101919102	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	HVLFAWTLLADRMPRLGGKSRAAVDDAVRDMLERVILAGYRNTWLLPAGVPDRLLAAEALTAEHGLGASTAAQEKAVVRATLAQVRDRLATWDITLPHVDHPELGRA*
Ga0070675_1012191282	3300005354	Miscanthus Rhizosphere	AVRDMLERVILAGYRNTWLLPPGAREGLLAAEALTAQHGLGASTVEQEKAVVRATVAQVRERLATWDIALPYVTHPELGRA*
Ga0070703_101593312	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	LPGLDAAGLAAVGQAVRDMLERVILAGYRNTWLLPAEAHEPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLAGWNVTLPHIDHPELGRA*
Ga0070710_101363321	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LPRLDAAGRAAVGGAVRDMLERVILAGYRNTWLLPAEAREPLLAAEVLTAEHGLGASTVAQEKSVVRATLAQVRERLATWDVMLAPVDHPELGRA*
Ga0070711_1004296961	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	GYRNTWLLPGEAREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLATWDVTLAPVDHPELGRA*
Ga0066681_108661901	3300005451	Soil	SFGSGGRSAVATAVRGLLERVILAGYRNTWLLPADSREPWLGAEAETAARGLGASTVAEEKSVLRATVAQVRERLAVWEIDVPLVQHPELGAI*
Ga0070681_101297191	3300005458	Corn Rhizosphere	GRADVGRAVRDMLERVILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRDRLAMWDVALPVVDHPELGRA*
Ga0070681_116182551	3300005458	Corn Rhizosphere	TLLGDRLPGLDAAGLAAVGQTVRYMLERVILAGYRNTWLLPAEAHEPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLAGWNVTLPHIDHPELGRA*
Ga0068867_1006074841	3300005459	Miscanthus Rhizosphere	RHVLFAWTLLADRMPRLGGKSRAAVDDAVRDMLERVILAGYRNTWLLPAGVPDRLLAAEALTAEHGLGASTAAQEKAVVRATLAQVRDRLATWDIALPHVDHPELGRI*
Ga0070698_1004186791	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LTGYRNTWLLPAGAGDRLLAAEALVAEHGLGASTAEQEQTVVRATLAQVRERLATWDIVLPYVTHPALGRA*
Ga0070698_1016841392	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	RNTWLLPAGVPDRLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRDRLTAWDIALPHVDHPELGRA*
Ga0070699_1004274921	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	RAAVAEAVRDMLERVILAGYRNTWLLPAGAREPLLAAEALAAEHGLGTSTVAQEKAVVRATLAQVRDRLATWDVALPHVDHPELGRA*
Ga0070697_1000411031	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	PRLDAAGRAAVGGAVRDMLERVILAGYRNTWLLPAEAREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLATWDVTLAPVDHPELGRA*
Ga0070697_1018281412	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LPRLDAAGRAAVGLAVRDMLERVILAGYRNTWLLPADAREPLLAAEALTAEHGLGASTVVHEKAVVRATLAQVRERLAMWEIALPHVDHPELGHA*
Ga0066697_105581631	3300005540	Soil	AVATAVRDMLERVILAGYRNTWLLPPGAREGLLAAEALTAQHGLGASTVEQEKAVVRATLAQVRERLAAWDIALPHVDHPELGRA*
Ga0070696_1002252163	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	AVRDMLERVILAGYRNTWLLPAGAPDRLLAAEALTAEHGLGASTAAQEKAVVRATLAQVRDRLATWDIALPHVDHPELGRA*
Ga0070696_1006580791	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LRGYRTTWLLPKGERERWIDAETVTAERGLGASTVAQETSVLRATITQVRERLATWRIALPRVWHPDLGEV*
Ga0070693_1002091361	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	LAGYRNTWLLPAEAHEPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLAGWNVTLPHIDHPELGRA*
Ga0070704_1002863153	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	DMLERVILAGYRNTWLLPAGAPDRLLAAEALTAEHGLGASTAEQERAVVRATLAQVRDRLATWDIALPHVDHPDLGRA*
Ga0066695_100817771	3300005553	Soil	AVATAVHDMLERVILAGYRNTWLLPPGAREGLLAAEALTAQHGLGASTVEQEKAVVRATLAQVRERLAAWDITLPYVDHPELGRA*
Ga0068857_1021213001	3300005577	Corn Rhizosphere	ALLADRMPALDAGGRADVGRAVRDMLERVILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRDRLATWDVALPVVDHPELGRA*
Ga0068854_1002744582	3300005578	Corn Rhizosphere	WLLPPGVPDRLLAAEALTAEHGLGASTAAQEKAVVRATLAQVRDRLAAWDIALPHVDHPELGRI*
Ga0068852_1026175362	3300005616	Corn Rhizosphere	TVRDMLERVILAGYRNTWLLPAEARGPLLAAEALTAQHGLGASTVAQEQAVVRATLAQVRERLAGWNVTLPHVDHPELGRA*
Ga0066905_1005778212	3300005713	Tropical Forest Soil	RLPDLSPAGREIVAAAARDMFERVILAGYRNTWLLPAGAAEPWLRAEAETAARGLGASTVAQERGVLRATVAQVRERLAVWGVVLPRATHPALGDV*
Ga0066905_1008913591	3300005713	Tropical Forest Soil	AVAGTVRDMLERVLLAGYRNAWLLPAGARERLIAAETLTARHGLGASTAEQEKAVFRATVAQVRERLAALDVPLPTVEHPDLGRL*
Ga0068863_1008759832	3300005841	Switchgrass Rhizosphere	AVAEAVRDMLERVILAGYRNTWLLPAGSPDRLLAAEALTAQHGLGASTAEQEKAVVRATLSQVRDRLATWGIALPHVDHPALGRA*
Ga0075295_10252092	3300005879	Rice Paddy Soil	RDMLERVILAGYRNTWLLPANAREPLLAAEALTAEHGLGASTVAQEKAVVRATLSQVRDRLAAWEIRLPHVDHPELGRA*
Ga0075023_1001370092	3300006041	Watersheds	EAVRDMLERVILAGYRNTWLLPAGAREPLLAAEALAAEHGLGASTVAQEKAVVRATLAQVRGRLAAWDITLAHVDHPELGRA*
Ga0097621_1021939661	3300006237	Miscanthus Rhizosphere	LLADRMPRLDGKSRAAVAEAVRDMLERVILAGYRNTWLLPPGVPDRLLAAEALTAEHGLGASTAAQEKAVVRATLAQVRDRLAAWDIALPHVDHPELGRA*
Ga0074059_115197431	3300006578	Soil	ADRLPRLAPERRPAVAAAVRDMLERVILAGYRNTWLLPAGGPDQLLAAEALTAEHGLGASTAAQEKAVVRATLAQVRDRLATWDIALPHVDHPELGRA*
Ga0079222_120235071	3300006755	Agricultural Soil	DADGRAAVGLAVRDMLERVILAGYRNTWLLPAGAREPLLAAEALTAEHGLGASTVAQEKSVVRATLVQVRERLAAWDVALPHVDHPELGRA*
Ga0079221_103480701	3300006804	Agricultural Soil	DGLAVRDMLERVILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTLAQEKAVVRATLAQVRDRLATWDVALPVVDHPELGRA*
Ga0075433_114223511	3300006852	Populus Rhizosphere	GGAVRDMLERVILAGYRNTWLLPAEAREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLATWDITLAPVDHPELGPA*
Ga0075425_1001229375	3300006854	Populus Rhizosphere	DMLERVILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRDRLAMWDVALPVVDHPELGRA*
Ga0075434_1007467962	3300006871	Populus Rhizosphere	ERVILAGYRNTWLLPAEAREPLLTAEALTAEHGLGASTVAQEKAVVRATLAQVRERLGTWDITLAPVDHPELGHA*
Ga0075434_1016454811	3300006871	Populus Rhizosphere	ALDEPRRAAVTSAVRDMLERVILAGYRNTWLLPAPSRDIWLRAEAETAARGLGASTMAQEQSVLRATVAQVRERLAVWGIALPQATHPEMGTF*
Ga0075426_108676461	3300006903	Populus Rhizosphere	LPALDEPRRAAVTSAVRDMLERVILAGYRNTWLLPAPSRDIWLRAEAETAARGLGASTMAQEQSVLRATVAQVRERLAVWGIVLPQATHPEMGTF*
Ga0079219_100276514	3300006954	Agricultural Soil	GRADVGRAVRDMLERVILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRDRLATWDVALPVVDHPELGRA*
Ga0105240_123874432	3300009093	Corn Rhizosphere	TWLLPAEAHEPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLAGWNVTLPHIDHPELGRA*
Ga0105245_106938812	3300009098	Miscanthus Rhizosphere	AVRDMLERVILAGYRNTWLLPAGVPDRLLAAEALTAEHGLGASTAAQEKAVVRATLSQVRGRLATWDIALPLVDHPELGRA*
Ga0105245_123502942	3300009098	Miscanthus Rhizosphere	RAVRDMLERVILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRERLATWDVALPVVDHPELGRA*
Ga0105248_102447883	3300009177	Switchgrass Rhizosphere	VAEAVRDMLERVILAGYRNSWLLPAGVADRLLAAEALTAEHGLGASTAAQEKAVVRATLAQVRDRLATWDIALPHVDHPELGRA*
Ga0105249_111537661	3300009553	Switchgrass Rhizosphere	RAVRDMLERVILVGYRNSWLLPAEARDPLLAAEALTARHGLGASTVAPEKAVVRATLAQVRDRLAMWDVALPVVDHPELGRA*
Ga0126380_121094941	3300010043	Tropical Forest Soil	RGYRTTWLLPEAERKRWSEAEALTAEHGLGASTVAQEKTVLRATVAQVRERLAVWDIVLPAVTHPDLGRL*
Ga0126384_104872962	3300010046	Tropical Forest Soil	VRDVLENVVLRGYRTTWLLPEAERKRWSDAEALTAEHGLGASTVTQEKTVLRATVAQVRERLAVWDIVLPAVTHPDLGRL*
Ga0126384_109721862	3300010046	Tropical Forest Soil	LDEPRRAAVTSAVRDILERVILAGYRNTWLLPSPVRDTWLRAEAETAARGLGASTMAQEQSVLRATVAQVRERLRVWGIAMPPAAHPEMGTF*
Ga0126372_106733112	3300010360	Tropical Forest Soil	GRRAAVADAVRDMLERVILAGYRNTWLLPRGAREPLLAAEALTAEHGLGASTVSQEQAVVRATIAQVRDRLAAWDITLAHLDHPDLGRA*
Ga0134125_117172202	3300010371	Terrestrial Soil	RDMLERVILAGYRNTWLLPAEAHEPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLAGWNVTLPHIDHPELGRA*
Ga0134124_108696112	3300010397	Terrestrial Soil	YRNTWLLPPGAREGLLAAEALTAQHGLGASTVEQEKAVVRATLAQVRERLATWDIALPYVDHPELGHA*
Ga0134124_117729072	3300010397	Terrestrial Soil	LLGDRLPGLDAAGLAAVGQTVRDMLERVILAGYRNTWLLPAEAHEPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLAGWNVTLPHIDHPELGRA*
Ga0126383_113968462	3300010398	Tropical Forest Soil	MLEGVILVGYRNTWLLPSPSRDTWLRAEAETAAGGLGASTMAQEQSLLRATVAQVRERLAVWGIALPLATHSEMGTF*
Ga0126383_117650231	3300010398	Tropical Forest Soil	LPARARERLLAAEELTARHGLGASNAAQEQAVLRATIAQVRERLAAWDVELPPIAHPELGCL*
Ga0124844_10753922	3300010868	Tropical Forest Soil	MLERVILAGYRNTWLLPRGAGEPLLAAEALTAEHGLGASTVAEEQAVVRATIAQVRDRLVAWEITLAHLDHPELGRA*
Ga0105246_103933322	3300011119	Miscanthus Rhizosphere	AWTLLGDRLPGLDAAGLAAVGQTVRDMLERVILAGYRNTWLLPAEAHEPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLAGWNVTLPHIDHPELGRA*
Ga0137391_113652462	3300011270	Vadose Zone Soil	AGYRNTWLLPPGASEGLLAAEALTAQHGLGASTVEQEKAVVRATLAQVRERLAAWDIALPYVTHPELGRA*
Ga0137440_10301551	3300011410	Soil	VRDMLERVILTGYRNTWLLPAEAREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRGRLAGWNVTLPHIDHPELGRA*
Ga0137453_10831871	3300012034	Soil	ILAGYRNTWLLPADAREPLLAAEALTAAHGLGASTVAQEKAVVRATLAQVRDRLAAWDITLALVNHPGLGRA*
Ga0137389_106692281	3300012096	Vadose Zone Soil	GYRNTWLLPAGAGERLLAAEALVAERGLGASTAEQEQAVVRATLAQVRERLATWDIVLPHVTHPALGRA*
Ga0137399_100085776	3300012203	Vadose Zone Soil	LLPPGAADRLLAAEALTAEHGLGASTAEQEKAVVRATLAQVRDRLAAWDIALPYVDHPELGRA*
Ga0137366_101243591	3300012354	Vadose Zone Soil	DMLERVILAGYRNTWLLPPGAREGLLAAEALTAQHGLGASTVEQEKAVVRATLAQVRERLATWDIALPYVTHPELGRA*
Ga0137375_104902221	3300012360	Vadose Zone Soil	DRMPALDATRRAAVDDAVRDMLERVILSGYRNSWLLPAGVPDRLLAAEALTAEQGLGASTAEQEKAVVRATLAQVRDRLATWDIALPHVDHPELGRA*
Ga0137360_101093693	3300012361	Vadose Zone Soil	ALRDMLERVILAGYRNTWLLPPGAADRLLAAEALTAEHGLGASTAEQEKAVVRATLAQVRDRLAAWDIALPYVDHPELGRA*
Ga0137360_113522221	3300012361	Vadose Zone Soil	RLPRLDAAGRAAVGLAVRDMLERVILAGYRNTWLLPADAREPLLAAEALTAEHGLGASTVVHEKAVVRATLAQVRERLAMWEIALPHVDHPELGHA*
Ga0157308_103847082	3300012910	Soil	GYRNTWLLPPGVPDRLLGAEALTAEHGLGASTAAQEKAVVRATLAQVRDRLAAWDIALPHVDHPELGRI*
Ga0137396_112777842	3300012918	Vadose Zone Soil	AGYRNTWLLPAGAREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLATWAITLAPVNHPELGRA*
Ga0137394_101971913	3300012922	Vadose Zone Soil	RAVVDAVRDMLAGVILAGYRNTWLLPAGAREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLATSAITLAPVNHPELGRA*
Ga0137359_115406742	3300012923	Vadose Zone Soil	WLLPADAREPLLAAEALTAEHGLGASTVAHEKAVVRATLAQVRERLAMWEIALPHVDHPELGRA*
Ga0137419_113991531	3300012925	Vadose Zone Soil	GYRNTWLLPAEAREPLLAAEALAAEHGLGASTVAQEKAVVRATLAQVRERLAGWNVTLPHIDHPELGRA*
Ga0137416_122357701	3300012927	Vadose Zone Soil	DMLERVILAGYRNTWLLPADAREPLLAAEALTAEHGLGASTVAHEKAVVRATLAQVRERLAMWEIALPHVDHPELGRA*
Ga0137407_100254151	3300012930	Vadose Zone Soil	TWLLPAGAPDRLLAAEALTAEHGLGASTAEQEKAVVRATLAQVRDRLATWDIALPHVDHPELGRA*
Ga0137410_111346561	3300012944	Vadose Zone Soil	QAVRDMLERVILAGYRNTWLLPADAREPLLAAEALAAEHGLGASTVAQEKAVVRATLAQVRERLAGWNVTLPHIDHLELGRA*
Ga0164309_108809651	3300012984	Soil	LFAWALLADRMPALDAGGRADVGRAVRDMLERVILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRDRLATWDVALPVVDHPELGRA*
Ga0164304_102912581	3300012986	Soil	ADVGRAVRDMLERVILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRDRLATWDVALPVVDHPELGRA*
Ga0163162_103777083	3300013306	Switchgrass Rhizosphere	WTLLGDRLPGLDAAGLAAVGQTVRDMLERVILAGYRNTWLLPAEAHEPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLAGWNVTLPHIDHPELGRA*
Ga0163162_126765652	3300013306	Switchgrass Rhizosphere	WALLADRMPALDAGGRADVGRAVRDMLERVILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRDRLAMWDVALPVVDHPELGRA*
Ga0132258_102734911	3300015371	Arabidopsis Rhizosphere	RNTWLLPPGAREGLLAAEALTAQHGLGASTVEQEKAVVRATLAQVRERLATWDIALPYVNHPELGRA*
Ga0132256_1022634482	3300015372	Arabidopsis Rhizosphere	ERVILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRDRLATWDVALPVVDHPELGRA*
Ga0132257_1027254721	3300015373	Arabidopsis Rhizosphere	RLDGKRRAAVAEAVRDMLERVILAGYRNTWLLPAGGPDRLLAAEALTAEHGLGASSAAQEKAVVRATLAQVRDRLATWDIALPHVDHPELGRA*
Ga0132257_1029754421	3300015373	Arabidopsis Rhizosphere	LAGYRNTWLLPPGAREGLLAAEALTAQHGLGASTVEQEKAVVRATLAQVRERLATWDIALPYVTHPELGRA*
Ga0132255_1028227221	3300015374	Arabidopsis Rhizosphere	RRAAVTSAVRDMLERVILAGYRNTWLLPAPSRDAWLRAEAETAARGLGASTMAQEQSVLRATIAQVRERLAVWGIVLPLATHPEMGTF*
Ga0187825_101965211	3300017930	Freshwater Sediment	GYRNTWLLPAGAREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLAAWDVALAPVDHPELGRA
Ga0187821_100851022	3300017936	Freshwater Sediment	AVGLAVRDMLERVILAGYRNTWLLPAGAREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLAAWDVALAPVDHPELGRA
Ga0187775_100451813	3300017939	Tropical Peatland	LERVILAGYRNTWLLPEEAREPLLAAEALTAQEGLGASTVAQEKAVVRATLAQVRERLATWDVALAPVDHPELGRA
Ga0187780_112869521	3300017973	Tropical Peatland	AGYRNTWLLPREAREPLLAAEALTAEHGLGASTEAQEQAIVRATVAQVRERLAVWDIALPHVDHPELGRV
Ga0184640_104326982	3300018074	Groundwater Sediment	LERVILAGYRNTWLLPPGARDRLLAAEAITAQHGLGASPVEQEKRVLRATVAQVRERLAALDVALPIVTHPELGRL
Ga0190265_101821964	3300018422	Soil	AAVADAARDMLERVVLAGYRNTWLLPPGAGDRLLAAEALTAEHGLGASTAAQERAVVRAAIAGVRERFATWGMRLPYVEHPELGRV
Ga0190272_114644022	3300018429	Soil	FAWTLLADRMPRLDGKSRAAVEEAVRDMLERVILAGYRNTWLLPTGVPDRLLAAEALTAEHGLGASTAAQEKAVVRATLAQVRDRLATWDIALPHVDHPELGRA
Ga0066669_118348902	3300018482	Grasslands Soil	NTWLLPPGAREGLLAAEALTAQHGLGASTVEQEKAVVRATLAQVRERLAAWDIALPHVDHPELGRA
Ga0173482_107923702	3300019361	Soil	GGRADVGRAVRDMLERVILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRERLATWDVALPVVDHPELGRA
Ga0193727_10918971	3300019886	Soil	RLPRLDAAGRAAVAEAVRDMLERVILAGYRNTWLQPGGAREPLLAAEALTAEHGLGASTVVQEKSVVRATLAQVRERLATWDIALAPVNHPELGRA
Ga0193730_10747001	3300020002	Soil	NTWLLPAESREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLATWDVTLAPIDHPELGRA
Ga0207697_104196942	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	RMPALDAGGRADVGRAVRDMLERVILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRDRLAMWDVALPVVDHPELGRA
Ga0209641_107159471	3300025322	Soil	VILAGYRNTWLLPPGARERLLAAEALTAQHGLGASTVEQEQAVVRATVAQVRERLSTWDITLPHVTHPEFGRV
Ga0207695_102672553	3300025913	Corn Rhizosphere	LLPAEAHEPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLAGWNVTLPHIDHPELGRA
Ga0207663_111024421	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	GYRNTWLLPGEAREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLATWDVTLAPVDHPELGRA
Ga0207646_116265122	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	TLLADRMPRLDGKSRAAVAEAVRDMLERVILAGYRNTWLLPGGAPDRLLAAEALTAEHGLGASTAAQEQAVVRATLAQVRDRLATWDIALPHVNHPELGRA
Ga0208418_10408842	3300026018	Natural And Restored Wetlands	RDMLERVILAGYRNTWLLPPAAREALLAAEALTARHGLGASTVEQEKAVVRATFAQVRERLATWDIALPYVTHPELGRA
Ga0207677_100616631	3300026023	Miscanthus Rhizosphere	RMPALDAAGRADVGRAVRDMLERVILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRDRLAMWDVALPVVDHPELGRA
Ga0207683_116306412	3300026121	Miscanthus Rhizosphere	VGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRERLATWDVALPVVDHPELGRA
Ga0209438_10494641	3300026285	Grasslands Soil	MLERVILAGYRNTWLLPADAREPLLAAEALTAEHGLGASTVAHEKAVVRATLAQVRERLAMWEIALPHVDHPELGHA
Ga0209266_13008272	3300026327	Soil	LLPPGAREGLLAAEALTAQHGLGASTVEQEKAVVRATLAQVRERLAAWDITLPYVDHPELGRA
Ga0257173_10211521	3300026360	Soil	VRDMLERVILAGYRNTWLLPADAREPLLAAEALTAEHGLGASTVAHEKAVVRATLAQVRERLAMWEIALPHVDHPELGRA
Ga0257179_10430291	3300026371	Soil	VGLAVRDMLERVILAGYRNTWLLPADAREPLLAAEALTAEHGLGASTVAHEKAVVRATLAQVRERLAMWEIALPHVDHPELGRA
Ga0257179_10573552	3300026371	Soil	ERLPRLDAAGRAAVAEAVRDMLERVILAGYRNKWLQPGGAREPLLAAEALSAEHGLGASTVAQEKAVVRATLAQVRDRLATWDITLAHVNHPELGRA
Ga0257167_10663881	3300026376	Soil	AVAAAVRDMLEGVILSGYRNSWLLPAGAGERLLAAEALVAERGLGASTVEQEQAVVRATLAQVRERLATWDIVLPHVTHPALGSE
Ga0257168_10654452	3300026514	Soil	RDMLERVILAGYRNTWLLPADAREPLLAAEALTAEHGLGASTVAHEKAVVRATLAQVRERLAMWEIALPHVDHPELGRA
Ga0257158_10217892	3300026515	Soil	TWLLPAESREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLATWDVTLAPVDHPELGRA
Ga0209996_10011111	3300027395	Arabidopsis Thaliana Rhizosphere	RAAVGATVRDMLERVILAGYRNTWLLPAEARGPLLAAEALTAQHGLGASTVAQEQAVVRATLAQVRERLAGWNVTLPHVDHPELGRA
Ga0210002_10653052	3300027617	Arabidopsis Thaliana Rhizosphere	GATVRDMLERVILAGYRNTWLLPAEARGPLLAAEALTAQHGLGASTVAQEQAVVRATLAQVRERLAGWNVTLPHVDHPELGRA
Ga0209217_10682151	3300027651	Forest Soil	AGYRNTWLLPAEAREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLATWDVTLAPVVDHPELGRA
Ga0209966_10126202	3300027695	Arabidopsis Thaliana Rhizosphere	MLERVILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRDRLAMWDVALPVVDHPELGRA
Ga0209178_13193261	3300027725	Agricultural Soil	VILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTLAQEKAVVRATLAQVRDRLATWDVALPVVDHPELGRA
Ga0209073_104962321	3300027765	Agricultural Soil	VGQAVRDMLERVILVGYRNSWLLPASAREPLLAAEALTARHGLGASTVAQEKAVVRATFAQVRERLATWGVALPVVDHPELGRA
Ga0209526_102273961	3300028047	Forest Soil	PRLAPEQRPAVAAAVRDMLEGVILAGYRNSWLLPAGAGERLLAAEALVAERGLGASTVEQEQAVVRATLAQVRERLATWDIVLPHVTHPALGSE
Ga0268265_119755682	3300028380	Switchgrass Rhizosphere	MLERVILAGYRNTWLLPAGVPDRLLAAEALTAEHGLGASTAEQEKAVVRATLAQVRDRLATWDIALPHVDHPELGRA
Ga0268264_101936353	3300028381	Switchgrass Rhizosphere	LPALDEPRRAAVTSAARDMLERVILAGYRNTWLLPSPSRDAWLRAEAETAARGLGASTMVQEQSVLRATIAQVRERLAVWGIVLPLATHPEMGTF
Ga0247822_104895611	3300028592	Soil	VLFAWTLLGDRLPGLDAAGLAAVGQTVRDMLERVILAGYRNTWLLPAEAHEPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLAGWNVTLPHIDHPELGRA
Ga0247821_104420941	3300028596	Soil	LVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRDRLATWDVALPVVDHPELGRA
Ga0307323_103385291	3300028787	Soil	ERLPRLDAAGRAAVAEAVRDMLERVILAGYRNTWLQPGGAREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLATWDIALAPVNHPELGRA
Ga0247824_101263563	3300028809	Soil	LVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRERLATWDVALPVVDHPELGRA
Ga0307310_103388342	3300028824	Soil	LPRLDAAGRAAVAEAVRDMLERVILAGYRNTWLQPGGAREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLATWDIALAPVNHPELGRA
Ga0247826_101784073	3300030336	Soil	KGLAAVGQTVRDMLERVILAGYRNTWLLPAEAHEPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLAGWNVTLPHIDHPELGRA
Ga0170824_1185544001	3300031231	Forest Soil	LVGYRNTWLLPPGAREGLLAAEALTAQHGLGASTVVQEKAEVRATFAQVRERLATWDIALPYVNHPELGRA
Ga0170820_100416471	3300031446	Forest Soil	RNTWLLPPGAREGLLAAEALTAQHGLGASTVVQEKAEVRATFAQVRERLATWDIALPYVNHPELGRA
Ga0307469_116334181	3300031720	Hardwood Forest Soil	RLAAAGRAAVAETVRDVLERVVLAGYRNTWLLPPDAREPLLAAEALTAERGLGASTVAQEKAVVRATLAQVRERLATWDITLAPVNHPELGRA
Ga0307475_104494741	3300031754	Hardwood Forest Soil	LLPADAREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLATWDVTLAPVDHPELGRA
Ga0307473_114534482	3300031820	Hardwood Forest Soil	HVLFAWTLLADRMPRLDAKGRAAVNDAVRDMLERVILAGYRNTWLLPAGAADRLLAAEALTAERGLGASAVAQEQAVVRATLAQVRERLATWDVPLPYVNHPELGRA
Ga0214473_124048771	3300031949	Soil	AGYRNTWLLPAGVPDRLLAAEAVTAEHGLGASTAAQEKAVVRATLAQVRDRLAIWDIALPHVDHPELGRA
Ga0310902_110704302	3300032012	Soil	TWLLPAEAREPLLAAEALTALHGLGASTVAQEKAVVRATLAQVRERLAAWDIALAPVEHPELGRA
Ga0307470_105260391	3300032174	Hardwood Forest Soil	VGEAVRDMLERVILAGYRNTWLLPAGVPDRLLAAEALTAEHGLGASTAEQEKAVVRATLAQVRDRLATWDIALPHVDHPELGRA
Ga0307471_1005984473	3300032180	Hardwood Forest Soil	LLPAGAGERLLAAEALVAERGLGASTVEQEQAVVRATLAQVRERLATWDIVLPHVTHPALGSI
Ga0307471_1006345081	3300032180	Hardwood Forest Soil	GYRNTWLLPAGAREPLLAAEALAAEHGLGASTVAQEKAVVRATLAQVRDRLATWDVALPHVDHPELGRA
Ga0307471_1010404141	3300032180	Hardwood Forest Soil	LAGYRNTWLLPAEAREPLLAAEALTAEHGLGASTVAQEKAVVRATLAQVRERLATWDVTLAPVDHPELGRA
Ga0307471_1013813671	3300032180	Hardwood Forest Soil	HVLFAWTLLADRMPRLDGKSRAAVAEAVRDMLERVILAGYRNTWLLPAGGPDQLIAAEALTAEHGLGASTAAQEKAVVRATLAQVRDRLATWDIALPHVDHPELGRA
Ga0335084_102410053	3300033004	Soil	LLAERMPRLDDEGRAAVTEAVRDMLERVILAGYRNAWLLPSGAGHLLAAEALTAERGLGASTVSQEHAVLRATLAQVRERLATWGIALPPVDHPELGRT
Ga0310811_102555021	3300033475	Soil	GRADVGRAVRDMLERVILVGYRNSWLLPAEAREPLLAAEALTARHGLGASTVAQEKAVVRATLAQVRDRLAMWDVALPVVDHPELGRA
Ga0326732_10137903	3300033501	Peat Soil	RLDAAGRAAVGLAVRDMLERVILAGYRNTWLLPAEAREPLLDAEALTALHGLGASTVAQEKAVVRATLAQIRERLAMWDVTLAHIEHPELGRA
Ga0370495_0225912_2_214	3300034257	Untreated Peat Soil	AGYRNTWLLPAGVPDRLLAAEALTAEHGLGASTAEQEKAVVRATLAQVRDRLATWDIALPHVDHPELGRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F053348

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences