NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F052921

Metagenome / Metatranscriptome Family F052921

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F052921
Family Type Metagenome / Metatranscriptome
Number of Sequences 142
Average Sequence Length 39 residues
Representative Sequence MNSFTVTAVGNLAKNPELAVKGDTTYTRICLVGNDYAG
Number of Associated Samples 130
Number of Associated Scaffolds 142

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 97.18 %
% of genes near scaffold ends (potentially truncated) 99.30 %
% of genes from short scaffolds (< 2000 bps) 90.14 %
Associated GOLD sequencing projects 123
AlphaFold2 3D model prediction Yes
3D model pTM-score0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (78.169 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa
(9.859 % of family members)
Environment Ontology (ENVO) Unclassified
(20.423 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(40.141 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 12.12%    Coil/Unstructured: 87.88%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 142 Family Scaffolds
PF00005ABC_tran 15.49
PF13570PQQ_3 4.23
PF02678Pirin 2.82
PF04966OprB 2.11
PF01244Peptidase_M19 1.41
PF14310Fn3-like 1.41
PF00326Peptidase_S9 1.41
PF10412TrwB_AAD_bind 0.70
PF04002RadC 0.70
PF13360PQQ_2 0.70
PF00754F5_F8_type_C 0.70
PF00076RRM_1 0.70
PF00990GGDEF 0.70
PF00202Aminotran_3 0.70
PF07690MFS_1 0.70
PF03315SDH_beta 0.70
PF02021UPF0102 0.70
PF00145DNA_methylase 0.70
PF01575MaoC_dehydratas 0.70
PF01546Peptidase_M20 0.70
PF03681Obsolete Pfam Family 0.70
PF13584BatD 0.70
PF00034Cytochrom_C 0.70
PF13203DUF2201_N 0.70
PF01384PHO4 0.70
PF06094GGACT 0.70
PF02604PhdYeFM_antitox 0.70
PF02222ATP-grasp 0.70

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 142 Family Scaffolds
COG1741Redox-sensitive bicupin YhaK, pirin superfamilyGeneral function prediction only [R] 2.82
COG3659Carbohydrate-selective porin OprBCell wall/membrane/envelope biogenesis [M] 2.11
COG2355Zn-dependent dipeptidase, microsomal dipeptidase homologPosttranslational modification, protein turnover, chaperones [O] 1.41
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 0.70
COG0306Phosphate/sulfate permeaseInorganic ion transport and metabolism [P] 0.70
COG0792Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 familyReplication, recombination and repair [L] 0.70
COG1760L-serine deaminaseAmino acid transport and metabolism [E] 0.70
COG2003DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motifReplication, recombination and repair [L] 0.70
COG2161Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM familyDefense mechanisms [V] 0.70
COG4118Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressorDefense mechanisms [V] 0.70


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms78.17 %
UnclassifiedrootN/A21.83 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2035918004|FACENC_F56XM5W01DNN4HAll Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium566Open in IMG/M
3300000789|JGI1027J11758_12864792All Organisms → cellular organisms → Bacteria → Proteobacteria589Open in IMG/M
3300001593|JGI12635J15846_10756288All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium558Open in IMG/M
3300004082|Ga0062384_101048283All Organisms → cellular organisms → Bacteria → Proteobacteria585Open in IMG/M
3300005329|Ga0070683_102317206All Organisms → cellular organisms → Bacteria → Proteobacteria515Open in IMG/M
3300005355|Ga0070671_100843222All Organisms → cellular organisms → Bacteria799Open in IMG/M
3300005437|Ga0070710_10847208All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium656Open in IMG/M
3300005458|Ga0070681_10280013All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae1578Open in IMG/M
3300005533|Ga0070734_10459811All Organisms → cellular organisms → Bacteria → Proteobacteria725Open in IMG/M
3300005534|Ga0070735_10224430All Organisms → cellular organisms → Bacteria1144Open in IMG/M
3300005537|Ga0070730_10172215All Organisms → cellular organisms → Bacteria1457Open in IMG/M
3300005541|Ga0070733_10091501All Organisms → cellular organisms → Bacteria → Proteobacteria1934Open in IMG/M
3300005616|Ga0068852_102519817All Organisms → cellular organisms → Bacteria → Proteobacteria534Open in IMG/M
3300005712|Ga0070764_10232417All Organisms → cellular organisms → Bacteria → Proteobacteria1044Open in IMG/M
3300005921|Ga0070766_10569424All Organisms → cellular organisms → Bacteria → Proteobacteria758Open in IMG/M
3300005921|Ga0070766_10676676All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium697Open in IMG/M
3300006052|Ga0075029_101010979All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300006086|Ga0075019_10166749All Organisms → cellular organisms → Bacteria → Proteobacteria1293Open in IMG/M
3300006163|Ga0070715_10033976All Organisms → cellular organisms → Bacteria → Proteobacteria2087Open in IMG/M
3300006172|Ga0075018_10601389All Organisms → cellular organisms → Bacteria585Open in IMG/M
3300007788|Ga0099795_10362077All Organisms → cellular organisms → Bacteria → Proteobacteria651Open in IMG/M
3300009088|Ga0099830_11205772Not Available628Open in IMG/M
3300009092|Ga0105250_10063152All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1491Open in IMG/M
3300009093|Ga0105240_11694239Not Available660Open in IMG/M
3300009177|Ga0105248_12800820Not Available556Open in IMG/M
3300009500|Ga0116229_11035410All Organisms → cellular organisms → Bacteria → Proteobacteria659Open in IMG/M
3300009510|Ga0116230_10068687All Organisms → cellular organisms → Bacteria → Proteobacteria3151Open in IMG/M
3300009518|Ga0116128_1084702All Organisms → cellular organisms → Bacteria951Open in IMG/M
3300009551|Ga0105238_10145045Not Available2350Open in IMG/M
3300009665|Ga0116135_1240342Not Available701Open in IMG/M
3300009709|Ga0116227_10946454All Organisms → cellular organisms → Bacteria648Open in IMG/M
3300010048|Ga0126373_11607498All Organisms → cellular organisms → Bacteria → Proteobacteria715Open in IMG/M
3300010303|Ga0134082_10563040All Organisms → cellular organisms → Bacteria → Proteobacteria503Open in IMG/M
3300010371|Ga0134125_10829968All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1016Open in IMG/M
3300010376|Ga0126381_103705101All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium598Open in IMG/M
3300010379|Ga0136449_103377910All Organisms → cellular organisms → Bacteria → Proteobacteria611Open in IMG/M
3300010396|Ga0134126_12335757All Organisms → cellular organisms → Bacteria → Proteobacteria582Open in IMG/M
3300010399|Ga0134127_12116680All Organisms → cellular organisms → Bacteria → Proteobacteria641Open in IMG/M
3300011269|Ga0137392_11206482All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300012096|Ga0137389_10533892All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1007Open in IMG/M
3300012189|Ga0137388_11530626Not Available604Open in IMG/M
3300012924|Ga0137413_10067364All Organisms → cellular organisms → Bacteria2133Open in IMG/M
3300012924|Ga0137413_10156813All Organisms → cellular organisms → Bacteria1493Open in IMG/M
3300012925|Ga0137419_11193550All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300012925|Ga0137419_11213528All Organisms → cellular organisms → Bacteria → Proteobacteria632Open in IMG/M
3300012930|Ga0137407_10345255All Organisms → cellular organisms → Bacteria → Proteobacteria1369Open in IMG/M
3300014165|Ga0181523_10120695All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales1561Open in IMG/M
3300014167|Ga0181528_10808973All Organisms → cellular organisms → Bacteria → Proteobacteria527Open in IMG/M
3300014169|Ga0181531_10274892All Organisms → cellular organisms → Bacteria → Proteobacteria1029Open in IMG/M
3300014489|Ga0182018_10456758All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium679Open in IMG/M
3300014657|Ga0181522_10452401All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium771Open in IMG/M
3300015241|Ga0137418_10616003Not Available849Open in IMG/M
3300016294|Ga0182041_10106358All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2074Open in IMG/M
3300016387|Ga0182040_11047525Not Available682Open in IMG/M
3300016387|Ga0182040_11936331All Organisms → cellular organisms → Bacteria → Proteobacteria506Open in IMG/M
3300016404|Ga0182037_10132014All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1855Open in IMG/M
3300017937|Ga0187809_10404647All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium521Open in IMG/M
3300017940|Ga0187853_10360712All Organisms → cellular organisms → Bacteria → Proteobacteria648Open in IMG/M
3300017946|Ga0187879_10318878All Organisms → cellular organisms → Bacteria → Proteobacteria863Open in IMG/M
3300017970|Ga0187783_10230531All Organisms → cellular organisms → Bacteria → Proteobacteria1356Open in IMG/M
3300017975|Ga0187782_11500166All Organisms → cellular organisms → Bacteria → Proteobacteria531Open in IMG/M
3300018020|Ga0187861_10429303All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300018025|Ga0187885_10427213All Organisms → cellular organisms → Bacteria → Proteobacteria593Open in IMG/M
3300018038|Ga0187855_10087051All Organisms → cellular organisms → Bacteria → Proteobacteria1897Open in IMG/M
3300018046|Ga0187851_10818824All Organisms → cellular organisms → Bacteria → Proteobacteria524Open in IMG/M
3300018060|Ga0187765_10437611Not Available815Open in IMG/M
3300020579|Ga0210407_10540893All Organisms → cellular organisms → Bacteria910Open in IMG/M
3300020579|Ga0210407_11263252All Organisms → cellular organisms → Bacteria → Proteobacteria553Open in IMG/M
3300021180|Ga0210396_11041011Not Available692Open in IMG/M
3300021401|Ga0210393_11016821All Organisms → cellular organisms → Bacteria → Proteobacteria671Open in IMG/M
3300021405|Ga0210387_10714819All Organisms → cellular organisms → Bacteria888Open in IMG/M
3300021432|Ga0210384_10140709All Organisms → cellular organisms → Bacteria → Proteobacteria2166Open in IMG/M
3300021433|Ga0210391_11407956Not Available536Open in IMG/M
3300021479|Ga0210410_10023959All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli5272Open in IMG/M
3300024220|Ga0224568_1026107All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium605Open in IMG/M
3300024288|Ga0179589_10590210Not Available520Open in IMG/M
3300025898|Ga0207692_11039623All Organisms → cellular organisms → Bacteria → Proteobacteria541Open in IMG/M
3300025913|Ga0207695_10012935All Organisms → cellular organisms → Bacteria → Proteobacteria9982Open in IMG/M
3300025914|Ga0207671_10250272All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1393Open in IMG/M
3300025914|Ga0207671_11580767All Organisms → cellular organisms → Bacteria → Proteobacteria505Open in IMG/M
3300025938|Ga0207704_10085968All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2049Open in IMG/M
3300025949|Ga0207667_11918763All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium554Open in IMG/M
3300026067|Ga0207678_11766984Not Available542Open in IMG/M
3300026078|Ga0207702_11925721Not Available582Open in IMG/M
3300026294|Ga0209839_10281123Not Available515Open in IMG/M
3300026508|Ga0257161_1126030All Organisms → cellular organisms → Bacteria → Proteobacteria537Open in IMG/M
3300027313|Ga0207780_1050385Not Available713Open in IMG/M
3300027505|Ga0209218_1083363All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300027652|Ga0209007_1061452Not Available951Open in IMG/M
3300027671|Ga0209588_1221915All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium584Open in IMG/M
3300027748|Ga0209689_1087030All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1641Open in IMG/M
3300027807|Ga0209208_10193399All Organisms → cellular organisms → Bacteria1143Open in IMG/M
3300027817|Ga0209112_10252135All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300027867|Ga0209167_10146854All Organisms → cellular organisms → Bacteria1235Open in IMG/M
3300027869|Ga0209579_10546171All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300027889|Ga0209380_10771878All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium547Open in IMG/M
3300027898|Ga0209067_10108650All Organisms → cellular organisms → Bacteria1448Open in IMG/M
3300028574|Ga0302153_10245661All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300028574|Ga0302153_10347307All Organisms → cellular organisms → Bacteria → Proteobacteria507Open in IMG/M
3300028748|Ga0302156_10376496Not Available622Open in IMG/M
3300028773|Ga0302234_10492928All Organisms → cellular organisms → Bacteria524Open in IMG/M
3300028776|Ga0302303_10167879All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium770Open in IMG/M
3300028780|Ga0302225_10016404All Organisms → cellular organisms → Bacteria → Proteobacteria3783Open in IMG/M
3300028906|Ga0308309_10689789Not Available887Open in IMG/M
3300029914|Ga0311359_10348345All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales1196Open in IMG/M
3300029914|Ga0311359_10387836All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1109Open in IMG/M
3300029943|Ga0311340_11066928Not Available659Open in IMG/M
3300030000|Ga0311337_11996713All Organisms → cellular organisms → Bacteria → Proteobacteria510Open in IMG/M
3300030007|Ga0311338_11299675Not Available683Open in IMG/M
3300030020|Ga0311344_10460165All Organisms → cellular organisms → Bacteria1143Open in IMG/M
3300030058|Ga0302179_10079155All Organisms → cellular organisms → Bacteria → Proteobacteria1456Open in IMG/M
3300030225|Ga0302196_10166204All Organisms → cellular organisms → Bacteria1139Open in IMG/M
3300030503|Ga0311370_10177788All Organisms → cellular organisms → Bacteria → Proteobacteria2895Open in IMG/M
3300030520|Ga0311372_12239623Not Available627Open in IMG/M
3300030580|Ga0311355_11280873All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300030940|Ga0265740_1030825Not Available595Open in IMG/M
3300031028|Ga0302180_10008539All Organisms → cellular organisms → Bacteria → Proteobacteria7149Open in IMG/M
3300031233|Ga0302307_10450259All Organisms → cellular organisms → Bacteria → Proteobacteria653Open in IMG/M
3300031236|Ga0302324_101076416All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1084Open in IMG/M
3300031236|Ga0302324_101521287Not Available868Open in IMG/M
3300031344|Ga0265316_11129113Not Available543Open in IMG/M
3300031524|Ga0302320_10103396All Organisms → cellular organisms → Bacteria → Proteobacteria4564Open in IMG/M
3300031524|Ga0302320_10278202All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae2256Open in IMG/M
3300031679|Ga0318561_10786792All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium523Open in IMG/M
3300031680|Ga0318574_10907427All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium516Open in IMG/M
3300031708|Ga0310686_113026648All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae879Open in IMG/M
3300031715|Ga0307476_10747546All Organisms → cellular organisms → Bacteria → Proteobacteria724Open in IMG/M
3300031837|Ga0302315_10493239All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium667Open in IMG/M
3300031894|Ga0318522_10133208Not Available933Open in IMG/M
3300031897|Ga0318520_10465283All Organisms → cellular organisms → Bacteria778Open in IMG/M
3300031902|Ga0302322_102363928All Organisms → cellular organisms → Bacteria → Proteobacteria654Open in IMG/M
3300031962|Ga0307479_10684869All Organisms → cellular organisms → Bacteria → Proteobacteria1005Open in IMG/M
3300031962|Ga0307479_10827328Not Available901Open in IMG/M
3300031962|Ga0307479_11462797Not Available641Open in IMG/M
3300031996|Ga0308176_12140548All Organisms → cellular organisms → Bacteria → Proteobacteria597Open in IMG/M
3300032063|Ga0318504_10283558Not Available782Open in IMG/M
3300032805|Ga0335078_11247929All Organisms → cellular organisms → Bacteria → Proteobacteria853Open in IMG/M
3300032898|Ga0335072_10793166All Organisms → cellular organisms → Bacteria → Proteobacteria907Open in IMG/M
3300033158|Ga0335077_11428780Not Available665Open in IMG/M
3300033405|Ga0326727_10877112All Organisms → cellular organisms → Bacteria → Proteobacteria676Open in IMG/M
3300034163|Ga0370515_0132134All Organisms → cellular organisms → Bacteria1073Open in IMG/M
3300034199|Ga0370514_101224Not Available735Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil9.86%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa9.86%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.15%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog6.34%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland4.23%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil4.23%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil3.52%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere3.52%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog2.82%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.82%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.82%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.82%
Host-AssociatedHost-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated2.82%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.11%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.11%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.11%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.11%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.11%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.41%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.41%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.41%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.41%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.41%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.41%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen1.41%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.41%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.70%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.70%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.70%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.70%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.70%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa0.70%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.70%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.70%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.70%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.70%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.70%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.70%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.70%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2035918004Soil microbial communities from sample at FACE Site 2 North Carolina CO2-EnvironmentalOpen in IMG/M
3300000789Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005533Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1EnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009092Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaGHost-AssociatedOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009500Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300009510Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MGHost-AssociatedOpen in IMG/M
3300009518Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150EnvironmentalOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300009709Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300014167Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaGEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017937Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4EnvironmentalOpen in IMG/M
3300017940Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018020Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100EnvironmentalOpen in IMG/M
3300018025Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018046Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10EnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300024220Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU5EnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025949Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026294Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)EnvironmentalOpen in IMG/M
3300026508Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-AEnvironmentalOpen in IMG/M
3300027313Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 45 (SPAdes)EnvironmentalOpen in IMG/M
3300027505Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027652Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027807Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)Host-AssociatedOpen in IMG/M
3300027817Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027898Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300028574Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_2EnvironmentalOpen in IMG/M
3300028748Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2EnvironmentalOpen in IMG/M
3300028773Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2EnvironmentalOpen in IMG/M
3300028776Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1EnvironmentalOpen in IMG/M
3300028780Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029914III_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300030000I_Fen_N3 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030020II_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300030058Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1EnvironmentalOpen in IMG/M
3300030225Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_3EnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030580II_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030940Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031028Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031233Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031344Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaGHost-AssociatedOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031837Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1EnvironmentalOpen in IMG/M
3300031894Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031902Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300031996Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033405Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MYEnvironmentalOpen in IMG/M
3300034163Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14EnvironmentalOpen in IMG/M
3300034199Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FACENCA_65999602035918004SoilMISFKLTAVGHLARNPELSTTGDATFARFCLVGKDE
JGI1027J11758_1286479223300000789SoilMNSFTLTAVGNLARNPEFVAKNDMSYARFCLVGNDYAGKAEG
JGI12635J15846_1075628823300001593Forest SoilMNSFNLTAVGNLANDPELAVKGDTTYTKFCMVGNDY
Ga0062384_10104828313300004082Bog Forest SoilMNSFTLTAVGHLARNPELIARGSVAYTRFCLVGTDYAGKDEEG
Ga0070683_10231720613300005329Corn RhizosphereMHSFRISAVGNLARNPELVAKGDVTYTRFCLVANDYAGKDEE
Ga0070671_10084322213300005355Switchgrass RhizosphereMEQPMNSFTLTAVGNLARNPEFISKNDVSYARFCLVGNDYA
Ga0070710_1084720813300005437Corn, Switchgrass And Miscanthus RhizosphereMNSFTLTAVGNLARNPEFVSKNDVSYARFCLVGNDYAGKD
Ga0070681_1028001313300005458Corn RhizosphereMFMNSFSLRAVGNLANTPEIASKGDVTYTRLHLIGNDYAGKDQEGATREV
Ga0070734_1045981133300005533Surface SoilMKMNSFTLRAVGTLARNPEAVPFEDVTVARFCLVGHDRTSED
Ga0070735_1022443013300005534Surface SoilMNSFTLTAIGNLSRNPELTVKGDRTYAKFCLIGNDYAGKDEEGG
Ga0070730_1017221513300005537Surface SoilMNSFNLMAVGNLAKDPELNLKGDTTYARFCLVGNDYVGKDDQGNA
Ga0070733_1009150113300005541Surface SoilMNSFKLTAVGNLARNPELVAKNETSYAKICLVGNDYAGKDEEGG
Ga0068852_10251981723300005616Corn RhizosphereMNSFRISAIGNLARNPEFVAKGDVTYTRFCLVANDY
Ga0070764_1023241713300005712SoilMNSFTLTAVGHLARNPELVARGSMAYTRFCLVGTDYAGKDEEGAAR
Ga0070766_1056942413300005921SoilMNSFTLIAVGNLAKDPEFSVKGDTSYARFCLVGND
Ga0070766_1067667613300005921SoilMNSFTLTAVGNLARNPELVAKNDSSYTRFCLVGNDY
Ga0075029_10101097913300006052WatershedsMNSFTVTAVGNLAKNPELAIKGDTSYARICLVGND
Ga0075019_1016674913300006086WatershedsMNSFSVTAVGNLAKDPELAYKGDTTYTRICLVGNDYAGKD
Ga0070715_1003397633300006163Corn, Switchgrass And Miscanthus RhizosphereMNSFALTAIGNLARNPDLITRSDTSYTRFCLIANDYAGR
Ga0075018_1060138913300006172WatershedsMNSFRLSAVGNLARSPDCVDKGDTPYTRFCLVGNDYAGRDDEGAARE
Ga0099795_1036207713300007788Vadose Zone SoilMNSFTLTAVGNLARNPELVTKNDSSDARFCLVGNDYSVKDEDGAA
Ga0099830_1120577213300009088Vadose Zone SoilMNSFTVTAVGNLARDPEFAVKGDTTYTRICLVGNDYAVKDDQGN
Ga0105250_1006315213300009092Switchgrass RhizosphereMNSFTLTAIGNLAKDPEMSAKDETLYTRFRLLGSDYSGKDGQGVSRV
Ga0105240_1169423923300009093Corn RhizosphereMNSFSVMAIGNLAKSPELESKGSLSFTRFCLIGNDYAG
Ga0105248_1280082013300009177Switchgrass RhizosphereMNSFTLTAIGNLAKDPEMSAKDETLYTRFRLLGSDYSGKDGQGVAR
Ga0116229_1103541023300009500Host-AssociatedMNSFTITAIGNLAKNPELSVKGDTAYTRFCLVGNDYAGKD
Ga0116230_1006868713300009510Host-AssociatedMNSFTITAVGNLAANPELNVKGDTTYTRFCLVGND
Ga0116128_108470213300009518PeatlandMNSFTVMAIGNLAKNPEMNSKGDTSYTRFCLVGNDYAGKD
Ga0105238_1014504513300009551Corn RhizosphereMNSFKVFAVGNLARNPELVASGSSLRTRLCLVGNDYI
Ga0116135_124034223300009665PeatlandMNSFNLMAVGNLSNNPELAVKGDTTYTKFCLVGDDY
Ga0116227_1094645423300009709Host-AssociatedMNSFTVTAVGNLAKNPEWSVKGDTGYARFCLVGNDYA
Ga0126373_1160749823300010048Tropical Forest SoilMNSFKLTAVGNLAKTPELESKSGSSYARLCLVGNDYAGKDEEGSPREV
Ga0134082_1056304013300010303Grasslands SoilMNSFTLTAVGNLARDPELAAKNDTSYARFCLVGNDYAGK
Ga0134125_1082996833300010371Terrestrial SoilMFMNSFSLRAVGNLANTPEIASKGDVTYTRLHLIGNDYAGKDQEGTA
Ga0126381_10370510113300010376Tropical Forest SoilMNSFTLTAVGNLARDPELMSKADRSYTKLCLVGNDYAGKDE
Ga0136449_10337791023300010379Peatlands SoilTMNSFTVTAIGNLAKNPELVAKGDTAYTRFCLIG*
Ga0134126_1233575723300010396Terrestrial SoilMNSFTLTAVGNLATEPELAVKGGTTYARICLVGNDY
Ga0134127_1211668023300010399Terrestrial SoilMNSFTLTAVGNLSRNPELTVKGDRTYAKFCLIGNAYAGKDEEGGAR
Ga0137392_1120648223300011269Vadose Zone SoilMNSFTITAVGNLAKDPELAVKGDTTYARICLVGNDYAG
Ga0137389_1053389233300012096Vadose Zone SoilMNSFTLTAVGNLARNPELVSKNDSSYTRFCLVGNDY
Ga0137388_1153062623300012189Vadose Zone SoilMLNHQLEYAMHSFKLIAVGNLARSPEMSQKGDTTYTNFCLIGNDY
Ga0137413_1006736433300012924Vadose Zone SoilMNSFTLTAIGNLAKDPELLAKGDTTYAKFYLLGNDYAGKDEDGN
Ga0137413_1015681323300012924Vadose Zone SoilMNSFTVTAVGNLARNPELAVKGDTTYTRICLVGND
Ga0137419_1119355023300012925Vadose Zone SoilMNSFTLTAVGNLAKDPELAVKGGTTHAHICLVGNDYAGKD
Ga0137419_1121352823300012925Vadose Zone SoilMNSFTITAVGNLAKDPELAVKGDTTYARICLVGNDYAGKDE
Ga0137407_1034525533300012930Vadose Zone SoilMNSFTVTAVGNLAKDPELAVKGETTYTRLCLVGND
Ga0181523_1012069513300014165BogMNCFNLIAVGNLAKNPELAVKGDTTYTRICLVGNDYAGKD
Ga0181528_1080897313300014167BogMDSFKITAVGNLAKNPELETKGELTYARFCLIGNDYAGKDED
Ga0181531_1027489213300014169BogMDAFTLTAVGHLARDPELETKGDKTFARFCLVGNDYAGK
Ga0182018_1045675823300014489PalsaMHSFNLTAIGNLARNPELNAKGDTTFTRFCLVGNDYAGKDEDG
Ga0181522_1045240113300014657BogMNSFTLIAVGNLAKNPELMVKGDTSYTRLCLVGNDYAGKD
Ga0137418_1061600333300015241Vadose Zone SoilMNSFTLTAVGNLARNPELVAKSDSSYTRFCLVGND
Ga0182041_1010635833300016294SoilMNSFTLTAVGNLARNPEFVAKNDMNYTRFCLVGNDY
Ga0182040_1104752513300016387SoilMNSFTLTAVGHLASNPEFVAKNNTSYARFCLMGNDYAGKDE
Ga0182040_1193633123300016387SoilMNSFKLTAVGNLARAPDLESKNGSSYARFCLVGNDYAGKDEEG
Ga0182037_1013201413300016404SoilMDSFMLTAVGNLADNPELVARNDRSYTRFFLMGNDYAGKDEGG
Ga0187809_1040464723300017937Freshwater SedimentMNSFRLTAIGNLARNPEFVAKNDTSYARFCLVGNDYAGKDE
Ga0187853_1036071213300017940PeatlandMNSFQLTAIGNLAKNPELVAKGDISYTRFCVIGNDYAGKD
Ga0187879_1031887823300017946PeatlandMNSFTVTAIGNLAKNPELVAKADTAYTRFCLVGKA
Ga0187783_1023053113300017970Tropical PeatlandMNSFTLTAVGNLARDPDLAASNDTSYARFCLVGNDY
Ga0187782_1150016613300017975Tropical PeatlandMNSFRLTAVGNLARDPELAAHGEKSYARFCLVGNDYAGKD
Ga0187861_1042930323300018020PeatlandMNSFTVTAIGNLAKNPEFHTKGDTTYTRICLVGNDYAGK
Ga0187885_1042721323300018025PeatlandMNSFTVTAIGNLAKNPELTVKADTAYTRICLVGNDYAGKDD
Ga0187855_1008705123300018038PeatlandMNSFTLTAIGNVARTPELIEKNGSTFTRFCLVGNDYAGKDVST
Ga0187851_1081882413300018046PeatlandMNSFTLTAIGNVARTPELIEKNGSTFTRFCLVGNDYAGKDD
Ga0187765_1043761113300018060Tropical PeatlandMNSFRVTAIGNLAKNPELIQKGDTVYTRFCLIGNDYAGK
Ga0210407_1054089313300020579SoilMNSFTLTAVGNLARDPEFAAKGDTSYARFCLVGNDY
Ga0210407_1126325223300020579SoilMNSFTITAVGNLAKDPELAVKGDTTYARICLVGNDYAGKDEHGN
Ga0210396_1104101133300021180SoilMNSFTMTAVGNLARNPELVSKPDRSYTKLCLVGND
Ga0210393_1101682113300021401SoilMNSFTLTAVGHLARNPELVARGSMAYTRFCLVGTDYAGKDE
Ga0210387_1071481913300021405SoilMNSFTLTAVGNLAKDPELAVKGDTAYTRLCLVGND
Ga0210384_1014070943300021432SoilMNSFTVTAVGNLARDPEFAVKGDTTYTRICLVGNDYAGKDEQ
Ga0210391_1140795623300021433SoilMNSFTLTAVGHLARNPELVARGSMAYTRFCLVGTD
Ga0210410_1002395983300021479SoilMNSFTVTAVGNLAKNPELAVKGDTTYTRICLVGNDYAGKDEQGN
Ga0224568_102610713300024220Plant LitterMNSFTVTAVGNLAKNPELAVKGDTTYTRLCLVGND
Ga0179589_1059021023300024288Vadose Zone SoilMNSFTLTAVGQLARNPELVAKGSTAYTKFCLVGNDY
Ga0207692_1103962313300025898Corn, Switchgrass And Miscanthus RhizosphereMNSFTLTAIGNLARNPELVSKSDTLYTHFCLVGNDYAG
Ga0207695_1001293583300025913Corn RhizosphereMNSFTLTAVGHLARSPEVITKGDVTCTRFCLIGNDYGGK
Ga0207671_1025027213300025914Corn RhizosphereMFMNSFSLRAVGNLANTPEIASKGDVTYTRLHLIGNDYAGKDQE
Ga0207671_1158076713300025914Corn RhizosphereMNSFKLTAVGNLARNPELSAKGDVTFSRFCLVGDDAAIKSEGEALG
Ga0207704_1008596833300025938Miscanthus RhizosphereMNSFALTAIGNLARNPDLITRSDTSYTRFCLIANDYAG
Ga0207667_1191876313300025949Corn RhizosphereMNSFTLTAVGNLARNPEAVAKGDVTFTRFCLVGNDYA
Ga0207678_1176698413300026067Corn RhizosphereMKSFTLIAVGHLGSTPEIATKGDTTYTRLCLIGND
Ga0207702_1192572123300026078Corn RhizosphereMNSFKVFAVGNLARNPELVASGSSLRTRLCLVGNDYIGRDEEGESREVV
Ga0209839_1028112313300026294SoilMNSFNLTAVGNLAKNPELAVKGDTTYTRICLVGNDYAGKDE
Ga0257161_112603013300026508SoilMNSFTLTAVGNLARNPELVAKNDSSYTRFCLVGNDYAG
Ga0207780_105038523300027313Tropical Forest SoilMNSFTLRAVGCLAKAPELVARTEGPYTRFCLIGNDYA
Ga0209218_108336313300027505Forest SoilMNSFTLTAVGNLAKDPEFAAKGETGYARFCLVGNDYAGKDA
Ga0209007_106145223300027652Forest SoilMNSFTVTAVGNLAKDPEVHVKGDTTYSKICLVGND
Ga0209588_122191513300027671Vadose Zone SoilMNSFTVTAVGNLARDPEFAVKGDTTYTRICLVGNDYAG
Ga0209689_108703043300027748SoilMNSFTLTAVGNLARDPELAAKNDTSYARFCLVGNDYAG
Ga0209208_1019339923300027807Host-AssociatedMQSFTVTAVGNLAKNPELAIKGDVTYTRICLVGNDYAGKDEHGNVR
Ga0209112_1025213523300027817Forest SoilMNSFTITAVGNLAEEPELANKGGTHYTQICLIGNDFAGKDEQGNAR
Ga0209167_1014685413300027867Surface SoilMNSFKLTAVGNLARNPELVAKNETSYAKICLVGNDYAGKDEEGA
Ga0209579_1054617113300027869Surface SoilMNSFTVTAVGNLAKNPELAVKGDTTYTRICLVGNDYA
Ga0209380_1077187823300027889SoilMNSFTLTAVGNLARNPELVTKGEKSHARFCLVGND
Ga0209067_1010865013300027898WatershedsMNSFTLTAVGNLAKNPELVAKNDTSYTRFCLVGNDY
Ga0302153_1024566123300028574BogMNSFMLTAVGNLAKSPELAVKGDTAYTRICLVGNDY
Ga0302153_1034730723300028574BogMNSFTVTAVGNLAKEPELAVKGDTSYTRFCLVGNDYAGRDAD
Ga0302156_1037649623300028748BogMNSFTVTAVGNLAKDPELAVKGDTTYARICLVGNDYAGKDEE
Ga0302234_1049292813300028773PalsaMNSFTVNAVGNLAKNPELAVKGDTSYTRFCLVGND
Ga0302303_1016787933300028776PalsaMNSFTVTAIGNLAKNPELVIKGDTAYTRFCLIGNDYA
Ga0302225_1001640453300028780PalsaMNSFMVTAVGNLAKNPELAVKGDTTYTRICLVGNDYAGKDEQ
Ga0308309_1068978913300028906SoilMNSFNLTAVGNLANDPELAVKGDTTYTKFCMVGNDYAGKD
Ga0311359_1034834533300029914BogMNSFTVTAVGNLAKNPELAVKGDTTYTRICLVGND
Ga0311359_1038783613300029914BogMNSFTVTAIGNLAKNPELMVKGDTSYTRFCLIGNDYA
Ga0311340_1106692813300029943PalsaMNSFNLTAVGNLSKDPEHAVKGDTTYTKFCLVGNDYAGKDEQGN
Ga0311337_1199671313300030000FenMKSFTVTAVGNLARDPEFASKGDTTYARFCLVGNDYAGKDAH
Ga0311338_1129967513300030007PalsaMNSFNLTAIGNLSKDPEHAVKGDTTYTKFCLVGDDYAGKDEQG
Ga0311344_1046016533300030020BogMNSFTVTAVGNLAKNPELAIKGDTTYTRLCLVGNDYAGKDDQ
Ga0302179_1007915513300030058PalsaMNSFMVTAVGNLAKNPELAVKGDTTYTRICLVGNDYAGKDEQGN
Ga0302196_1016620413300030225BogMNSFTVTAVGNLAKNPELAIKGDTTYTRLCLVGNDYAGKD
Ga0311370_1017778813300030503PalsaMNSFNLTAVGNLSKDPEHAVKGDTTYTKFCLVGNDYAGKD
Ga0311372_1223962323300030520PalsaMNSFNLTAVGNLSKDPEHAVKGDTTYTRFCLVGNDYAGKDEE
Ga0311355_1128087313300030580PalsaMNSFTLTAVGNLAADPELAAKGDITYTKFRLIGNDYAG
Ga0265740_103082523300030940SoilMNSFTVTAVGNLAKDPELAVKGDTSYTRFCLVGNDYA
Ga0302180_1000853913300031028PalsaMHSFKLTAIGNLAKNAELIAKGDISYTRFCLIGND
Ga0302307_1045025913300031233PalsaMHSFKLTAIGNLAKNAELIAKGDISYTRFCLIGNDYAGKDED
Ga0302324_10107641643300031236PalsaMNSFKLTAIGNLAKNPELVAKGDVSYTRFCVIGNDFAGKD
Ga0302324_10152128733300031236PalsaMNSFELSAVGNLAKNPELVTKGDTSYTRFCLIGNDYGGKEEDGST
Ga0265316_1112911323300031344RhizosphereMNSFTVFAVGNLAKDPEPGVKGDVSYARFCLVGND
Ga0302320_1010339613300031524BogMNSFTLTAIGNVARTPELIEKNGSTFTHFCLVGNDYAGKDDEGA
Ga0302320_1027820213300031524BogMDSFQVTAIGNLAKNPELIAKGDVSYTRFCLIGNDYAGKDEDG
Ga0318561_1078679223300031679SoilMHSFTLTAVGNLARNPELVAKNDTSYTRFCIVGND
Ga0318574_1090742713300031680SoilMNSFTLTAVGHLASNPEFVAKNHASYARFCLIGNDYAGKD
Ga0310686_11302664813300031708SoilMNSFTLTAIGNLSRNPELTVKGDRTYAKFCLIGNDYAGKDEE
Ga0307476_1074754623300031715Hardwood Forest SoilMNSFTLTAVGNLATEPELAAKGGTAYARFCLVGNDYAGKDTQGN
Ga0302315_1049323913300031837PalsaMNSFTVTAVGNLAKNPELAVKGDTTYTRICLVGNDYAG
Ga0318522_1013320833300031894SoilVNSFTLNAVGNLARNPEFVAKNDTSYTRFCLAGCSAL
Ga0318520_1046528313300031897SoilMNSFKLTAVGNLARNPEFVAKNDTSYARFCLVGNDY
Ga0302322_10236392813300031902FenMNSFTLMAVGNLAKDPECVDTGATPYTRFCLVGNDYAGKDEEG
Ga0307479_1068486913300031962Hardwood Forest SoilMNSFTMTAVGNLARNPELVSKPDRSYTKLCLVGNDYAGKDE
Ga0307479_1082732813300031962Hardwood Forest SoilMNSFTVTAVGNLAKDPELAVKGDTTYTRLCLVGNDYAGKD
Ga0307479_1146279713300031962Hardwood Forest SoilMNSFTVTAVGNLARDPEFAVKGDTTYTRICLVGNDYAGKDEQGN
Ga0308176_1214054813300031996SoilMHSFRISAVGNLARNPELVAKGDVTYTRFCLVANDYA
Ga0318504_1028355813300032063SoilVNSFTLNAVGNLARNPEFVAKNDTSYTRFCLVGND
Ga0335078_1124792913300032805SoilMNSFTLTAVGNLARNPELVAKNDTSYARFCLVGNDYA
Ga0335072_1079316613300032898SoilMDSFKMWAMGNLAKTPELDTRGERSYTRFCLIGNDYAGKDE
Ga0335077_1142878013300033158SoilMNSFEVSAIGNLAKDPELVSKGDTSYTRICLIGND
Ga0326727_1087711233300033405Peat SoilMNSFSVTAIGNLARNPELIAKSDGSYTRFCLIGNDYA
Ga0370515_0132134_3_1103300034163Untreated Peat SoilMHSFTLTAVGNLARNPELVVKDDATYARFCLLGNDY
Ga0370514_101224_3_1193300034199Untreated Peat SoilMNSFSVTAIGNLAKNPELIAKADTSYTRFCLIGNDYAGK


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