Metagenome / Metatranscriptome Family F052918

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F052918
Family Type	Metagenome / Metatranscriptome
Number of Sequences	142
Average Sequence Length	58 residues
Representative Sequence	MVWIVGALCLILFGAGIGVIGLSLNMFGYAIVGGIMVLAGIFLLVSFRRNSRYWGAKRP
Number of Associated Samples	92
Number of Associated Scaffolds	142

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	85.92 %
% of genes near scaffold ends (potentially truncated)	25.35 %
% of genes from short scaffolds (< 2000 bps)	83.10 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.817 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (27.465 % of family members)
Environment Ontology (ENVO)	Unclassified (26.056 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.408 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.62% β-sheet: 0.00% Coil/Unstructured: 41.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 142 Family Scaffolds
PF00196	GerE	4.93
PF13533	Biotin_lipoyl_2	3.52
PF03707	MHYT	2.11
PF12760	Zn_Tnp_IS1595	2.11
PF00892	EamA	1.41
PF14333	DUF4389	1.41
PF05135	Phage_connect_1	1.41
PF13614	AAA_31	0.70
PF13365	Trypsin_2	0.70
PF13671	AAA_33	0.70
PF13546	DDE_5	0.70
PF13304	AAA_21	0.70
PF08392	FAE1_CUT1_RppA	0.70
PF11742	DUF3302	0.70
PF13417	GST_N_3	0.70
PF00743	FMO-like	0.70
PF08447	PAS_3	0.70
PF01545	Cation_efflux	0.70
PF13924	Lipocalin_5	0.70
PF00528	BPD_transp_1	0.70
PF09361	Phasin_2	0.70
PF00005	ABC_tran	0.70
PF00589	Phage_integrase	0.70
PF13515	FUSC_2	0.70
PF12728	HTH_17	0.70
PF08446	PAS_2	0.70
PF02371	Transposase_20	0.70
PF13594	Obsolete Pfam Family	0.70
PF00195	Chal_sti_synt_N	0.70
PF08281	Sigma70_r4_2	0.70
PF01979	Amidohydro_1	0.70
PF05239	PRC	0.70

COG ID	Name	Functional Category	% Frequency in 142 Family Scaffolds
COG3300	MHYT domain, NO-binding membrane sensor	Signal transduction mechanisms [T]	2.11
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	2.11
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.70
COG0332	3-oxoacyl-[acyl-carrier-protein] synthase III	Lipid transport and metabolism [I]	0.70
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.70
COG2072	Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD	Inorganic ion transport and metabolism [P]	0.70
COG3424	Predicted naringenin-chalcone synthase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.70
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.70
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.70
COG4251	Bacteriophytochrome (light-regulated signal transduction histidine kinase)	Signal transduction mechanisms [T]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.82 %
All Organisms	root	All Organisms	47.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.82 %
cellular organisms	root	All Organisms → cellular organisms	47.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.82 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.39 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.49 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.82 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	4.23 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4.23 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.70 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.70 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.70 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.70 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.82 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.52 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	3.52 %
Rhizobiales bacterium GAS188	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	0.70 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.70 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.70 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.70 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.70 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.70 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.82 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3.52 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.52 %
unclassified Microvirga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga	0.70 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.70 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.70 %
Microbacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium	0.70 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.70 %
Rhizobiales bacterium GAS188	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	0.70 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.82 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3.52 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.52 %
Mesorhizobium sp. STM 4661	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. STM 4661	0.70 %
Microvirga sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga → Microvirga sp.	0.70 %
unclassified Microbacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium	0.70 %
Streptomyces afghaniensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces afghaniensis	0.70 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.70 %
Rhizobiales bacterium GAS188	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	0.70 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.82 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3.52 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.52 %
Microbacterium sp. 292MF	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. 292MF	0.70 %
Mesorhizobium sp. STM 4661	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. STM 4661	0.70 %
Microvirga sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga → Microvirga sp.	0.70 %
Streptomyces afghaniensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces afghaniensis	0.70 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.70 %
Rhizobiales bacterium GAS188	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	0.70 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.70 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105442290	Not Available	1205	Open in IMG/M
3300003911\|JGI25405J52794_10076674	Not Available	733	Open in IMG/M
3300004479\|Ga0062595_100365955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1013	Open in IMG/M
3300004480\|Ga0062592_100816109	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300004798\|Ga0058859_10630253	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300005093\|Ga0062594_100065728	All Organisms → cellular organisms → Bacteria → Proteobacteria	1962	Open in IMG/M
3300005332\|Ga0066388_100392345	All Organisms → cellular organisms → Bacteria → Proteobacteria	2034	Open in IMG/M
3300005332\|Ga0066388_107560071	Not Available	545	Open in IMG/M
3300005337\|Ga0070682_101730303	Not Available	544	Open in IMG/M
3300005441\|Ga0070700_100054925	All Organisms → cellular organisms → Bacteria → Proteobacteria	2491	Open in IMG/M
3300005444\|Ga0070694_101631501	Not Available	548	Open in IMG/M
3300005546\|Ga0070696_101595452	All Organisms → cellular organisms → Bacteria → Proteobacteria	560	Open in IMG/M
3300005548\|Ga0070665_101194811	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300005549\|Ga0070704_101910610	All Organisms → cellular organisms → Bacteria → Proteobacteria	550	Open in IMG/M
3300005713\|Ga0066905_100407530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1105	Open in IMG/M
3300005713\|Ga0066905_100626668	Not Available	914	Open in IMG/M
3300005713\|Ga0066905_100988016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces afghaniensis	742	Open in IMG/M
3300005713\|Ga0066905_101016559	Not Available	732	Open in IMG/M
3300005713\|Ga0066905_102017380	Not Available	536	Open in IMG/M
3300005713\|Ga0066905_102114763	Not Available	524	Open in IMG/M
3300005719\|Ga0068861_100161049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1851	Open in IMG/M
3300005719\|Ga0068861_100481753	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300005764\|Ga0066903_100229333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2829	Open in IMG/M
3300005764\|Ga0066903_101322262	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300005844\|Ga0068862_102616135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	516	Open in IMG/M
3300006049\|Ga0075417_10727574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. 292MF	511	Open in IMG/M
3300006058\|Ga0075432_10246154	Not Available	724	Open in IMG/M
3300006163\|Ga0070715_10114871	Not Available	1275	Open in IMG/M
3300006175\|Ga0070712_100282117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1338	Open in IMG/M
3300006196\|Ga0075422_10108751	Not Available	1072	Open in IMG/M
3300006237\|Ga0097621_101716343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	598	Open in IMG/M
3300006755\|Ga0079222_12544160	Not Available	514	Open in IMG/M
3300006791\|Ga0066653_10682137	Not Available	529	Open in IMG/M
3300006844\|Ga0075428_100022476	All Organisms → cellular organisms → Bacteria → Proteobacteria	6984	Open in IMG/M
3300006844\|Ga0075428_100595978	Not Available	1180	Open in IMG/M
3300006844\|Ga0075428_100885753	Not Available	947	Open in IMG/M
3300006845\|Ga0075421_100191865	All Organisms → cellular organisms → Bacteria → Proteobacteria	2534	Open in IMG/M
3300006846\|Ga0075430_100733118	Not Available	815	Open in IMG/M
3300006846\|Ga0075430_101097403	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300006847\|Ga0075431_100121028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2701	Open in IMG/M
3300006852\|Ga0075433_10002393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14271	Open in IMG/M
3300006871\|Ga0075434_101424371	Not Available	703	Open in IMG/M
3300006871\|Ga0075434_102633680	Not Available	503	Open in IMG/M
3300006914\|Ga0075436_101471453	Not Available	517	Open in IMG/M
3300009081\|Ga0105098_10505752	Not Available	616	Open in IMG/M
3300009094\|Ga0111539_10216518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	2231	Open in IMG/M
3300009094\|Ga0111539_10228931	All Organisms → cellular organisms → Bacteria	2165	Open in IMG/M
3300009094\|Ga0111539_10292748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1894	Open in IMG/M
3300009094\|Ga0111539_10392673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga → Microvirga sp.	1616	Open in IMG/M
3300009094\|Ga0111539_10540240	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300009094\|Ga0111539_10711074	Not Available	1169	Open in IMG/M
3300009094\|Ga0111539_11043360	Not Available	950	Open in IMG/M
3300009094\|Ga0111539_11308883	Not Available	841	Open in IMG/M
3300009100\|Ga0075418_10028997	All Organisms → cellular organisms → Bacteria → Proteobacteria	6032	Open in IMG/M
3300009100\|Ga0075418_10238846	All Organisms → cellular organisms → Bacteria	1934	Open in IMG/M
3300009100\|Ga0075418_13102491	Not Available	506	Open in IMG/M
3300009147\|Ga0114129_10609733	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300009156\|Ga0111538_10248942	All Organisms → cellular organisms → Bacteria	2250	Open in IMG/M
3300009156\|Ga0111538_10477579	Not Available	1580	Open in IMG/M
3300009156\|Ga0111538_12442620	All Organisms → cellular organisms → Bacteria → Proteobacteria	656	Open in IMG/M
3300009162\|Ga0075423_10614731	Not Available	1145	Open in IMG/M
3300009162\|Ga0075423_11361453	Not Available	759	Open in IMG/M
3300009176\|Ga0105242_11527569	Not Available	699	Open in IMG/M
3300009609\|Ga0105347_1208524	Not Available	788	Open in IMG/M
3300009792\|Ga0126374_10781681	Not Available	727	Open in IMG/M
3300009804\|Ga0105063_1055965	Not Available	577	Open in IMG/M
3300009816\|Ga0105076_1085016	Not Available	601	Open in IMG/M
3300009817\|Ga0105062_1100994	Not Available	571	Open in IMG/M
3300009820\|Ga0105085_1128077	Not Available	514	Open in IMG/M
3300009837\|Ga0105058_1117536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	632	Open in IMG/M
3300010043\|Ga0126380_10241570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1243	Open in IMG/M
3300010043\|Ga0126380_10768687	Not Available	784	Open in IMG/M
3300010046\|Ga0126384_10425408	Not Available	1127	Open in IMG/M
3300010046\|Ga0126384_10893156	Not Available	802	Open in IMG/M
3300010047\|Ga0126382_10040926	Not Available	2635	Open in IMG/M
3300010047\|Ga0126382_10075270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2087	Open in IMG/M
3300010047\|Ga0126382_10233162	All Organisms → cellular organisms → Bacteria → Proteobacteria	1336	Open in IMG/M
3300010359\|Ga0126376_11720571	Not Available	663	Open in IMG/M
3300010362\|Ga0126377_10063542	All Organisms → cellular organisms → Bacteria	3259	Open in IMG/M
3300010362\|Ga0126377_10208715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1877	Open in IMG/M
3300010362\|Ga0126377_12055141	Not Available	647	Open in IMG/M
3300010362\|Ga0126377_12191814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	629	Open in IMG/M
3300010362\|Ga0126377_12530061	Not Available	589	Open in IMG/M
3300010362\|Ga0126377_12657383	Not Available	576	Open in IMG/M
3300010362\|Ga0126377_12763585	Not Available	565	Open in IMG/M
3300010371\|Ga0134125_11651192	Not Available	697	Open in IMG/M
3300010396\|Ga0134126_11369061	Not Available	782	Open in IMG/M
3300012948\|Ga0126375_10697508	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300012960\|Ga0164301_10641371	Not Available	790	Open in IMG/M
3300012960\|Ga0164301_10739278	Not Available	745	Open in IMG/M
3300012989\|Ga0164305_10486345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	967	Open in IMG/M
3300013297\|Ga0157378_12710249	Not Available	548	Open in IMG/M
3300014969\|Ga0157376_10088454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2676	Open in IMG/M
3300015371\|Ga0132258_10001037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	46939	Open in IMG/M
3300015371\|Ga0132258_10646549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	2659	Open in IMG/M
3300015371\|Ga0132258_10984469	All Organisms → cellular organisms → Bacteria	2131	Open in IMG/M
3300015371\|Ga0132258_12412536	All Organisms → cellular organisms → Bacteria → Proteobacteria	1317	Open in IMG/M
3300015372\|Ga0132256_101826874	Not Available	716	Open in IMG/M
3300015373\|Ga0132257_100505647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1483	Open in IMG/M
3300015373\|Ga0132257_101027289	Not Available	1038	Open in IMG/M
3300015374\|Ga0132255_100536391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1723	Open in IMG/M
3300015374\|Ga0132255_104243900	Not Available	608	Open in IMG/M
3300018053\|Ga0184626_10021325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2632	Open in IMG/M
3300018469\|Ga0190270_11337887	Not Available	760	Open in IMG/M
3300019208\|Ga0180110_1164599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. STM 4661	579	Open in IMG/M
3300019232\|Ga0180114_1235636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1158	Open in IMG/M
3300020065\|Ga0180113_1378413	Not Available	519	Open in IMG/M
3300020066\|Ga0180108_1182345	Not Available	500	Open in IMG/M
3300021088\|Ga0210404_10252770	Not Available	959	Open in IMG/M
3300025905\|Ga0207685_10100929	Not Available	1234	Open in IMG/M
3300025907\|Ga0207645_10578282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	762	Open in IMG/M
3300025915\|Ga0207693_11406022	Not Available	518	Open in IMG/M
3300025972\|Ga0207668_11556317	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300026067\|Ga0207678_10084142	Not Available	2720	Open in IMG/M
3300026118\|Ga0207675_100126619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2419	Open in IMG/M
3300027880\|Ga0209481_10201674	Not Available	994	Open in IMG/M
3300027880\|Ga0209481_10386550	Not Available	716	Open in IMG/M
3300027907\|Ga0207428_10087740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2420	Open in IMG/M
3300027907\|Ga0207428_10158768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1718	Open in IMG/M
3300027907\|Ga0207428_10415170	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300027909\|Ga0209382_10354461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1643	Open in IMG/M
3300027909\|Ga0209382_10452881	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300027909\|Ga0209382_10510884	Not Available	1322	Open in IMG/M
3300028379\|Ga0268266_10697090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	979	Open in IMG/M
3300028592\|Ga0247822_11747719	Not Available	530	Open in IMG/M
3300031198\|Ga0307500_10078260	Not Available	852	Open in IMG/M
3300031547\|Ga0310887_10865599	Not Available	571	Open in IMG/M
3300031720\|Ga0307469_10194329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1577	Open in IMG/M
3300031740\|Ga0307468_100016295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3125	Open in IMG/M
3300031740\|Ga0307468_100016834	All Organisms → cellular organisms → Bacteria	3093	Open in IMG/M
3300031740\|Ga0307468_100284655	Not Available	1188	Open in IMG/M
3300031740\|Ga0307468_102141623	Not Available	539	Open in IMG/M
3300031854\|Ga0310904_10871730	Not Available	634	Open in IMG/M
3300031908\|Ga0310900_10363628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1087	Open in IMG/M
3300032012\|Ga0310902_10281533	Not Available	1016	Open in IMG/M
3300032013\|Ga0310906_10845880	Not Available	649	Open in IMG/M
3300032075\|Ga0310890_10784241	Not Available	753	Open in IMG/M
3300032205\|Ga0307472_100716657	Not Available	902	Open in IMG/M
3300032205\|Ga0307472_101616485	Not Available	637	Open in IMG/M
3300032205\|Ga0307472_101877054	Not Available	597	Open in IMG/M
3300033551\|Ga0247830_10358743	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300034818\|Ga0373950_0097578	Not Available	630	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.93%
Host-Associated	Host-Associated	45.07%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.00%
Plants	Host-Associated → Plants	44.37%
Aquatic	Environmental → Aquatic	4.93%
Human	Host-Associated → Human	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.51%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.15%
Freshwater	Environmental → Aquatic → Freshwater	3.52%
Sediment	Environmental → Aquatic → Sediment	1.41%
Digestive System	Host-Associated → Human → Digestive System	0.70%
Roots	Host-Associated → Plants → Roots	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	29.58%
Loam	Environmental → Terrestrial → Soil → Loam	13.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.93%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.52%
Sand	Environmental → Terrestrial → Soil → Sand	3.52%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.41%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.70%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	29.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.04%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.34%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.34%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.93%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.52%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.41%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.70%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.70%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	27.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.04%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.63%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.52%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	3.52%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.11%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.11%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.41%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.41%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.70%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.70%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.70%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.70%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.70%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.70%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009804	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019208	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT231_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019232	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT530_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020066	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT45_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1054422902	3300000364	Soil	MVWIVGAVCMILFGGGIGVIGLSLGMLGYAILGGIMVLYGVFLLVSIRRNSRYWSAKRT*
JGI25405J52794_100766741	3300003911	Tabebuia Heterophylla Rhizosphere	MVWIVGALCLILFGAGTGVIGLSLDMLGYAIVGGIMVLAGIWMLVSLRRHGRYWGENRP*
Ga0062595_1003659551	3300004479	Soil	MLWIVGALCLIFFGVGIGIIGFTFGMLGYAMVGGIMALAGIWMLVSLRRHSRYWTKP*
Ga0062592_1008161092	3300004480	Soil	MLWVVVALCLILFGAGIGVIGLSLNMLGYAIVGGIMALAGIIQLVSIRRNSRYRGAMRP*
Ga0058859_106302531	3300004798	Host-Associated	MVWIVGAVCLILFGGGIGVIGLTLGMLGYAIVGGIMALFGIFQLVSLRRNMAHWGTKTGSGRS*
Ga0062594_1000657282	3300005093	Soil	MVWIVLAICLILFGAGIGVIGFTLNMLGYAIVGGIMVLAGIWMLVSLRRQSRYWSAKQP*
Ga0066388_1003923452	3300005332	Tropical Forest Soil	MLWIVGALCLMVFGAGLGVIGLSLGMLGYAIVGGIMVLAGIWMLLSIRRQSRYWKVNRP*
Ga0066388_1075600712	3300005332	Tropical Forest Soil	MVWIVLALCLILFGAGIGVIGLSVSMLGYAIVGGIMVLAGIWMLVSLRRHSRYWSTNTGE
Ga0070682_1017303031	3300005337	Corn Rhizosphere	MVWIVLAICLILFGAGIGVIGFTLNMLGYAIVGGIMLLAGIWMLVSLRRQSRYWGAKQP*
Ga0070700_1000549254	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MVWIVGAFCLILFGAGIGFIGLSLDMLGYAIVGGIMVLAGIILLVSMRRHGRYWGAPNKSNL*
Ga0070694_1016315012	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MVWIVLAICLILFGAGIGVIGFTLNMLGYAIVGGIMVLAGIWMLVSLRRQS
Ga0070696_1015954522	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LMVWIVLAICLILFGAGIGVIGFTLNMLGYAIVGGIMVLAGIWMLVSLRRQSRYWSAKQP
Ga0070665_1011948111	3300005548	Switchgrass Rhizosphere	MLWVVVALCLILFGAGIGVIGLSLNMLGYAIFGGIMALAGIIQLVSIRRNSRYRGAMRP*
Ga0070704_1019106102	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VLAICLILFGAGIGVIGFTLNMLGYAIVGGIMVLAGIWMLVSLRRQSRYWSAKQP*
Ga0066905_1004075302	3300005713	Tropical Forest Soil	WIVGALCLILFGAGIGVIGLSLAMLGYAIIGGVMVLAGLWMLVSLRRHSRYWQANRH*
Ga0066905_1006266681	3300005713	Tropical Forest Soil	MVWIVGALCLIVFGAGLGVIGLSLDMLGYAIVGGIMVLAGIWMLVSIRRQSRYWKLDRP*
Ga0066905_1009880161	3300005713	Tropical Forest Soil	MVWIVGALCLILFGAGIGVIGLSLDMLGYAIVGGIMVLAGIWMLVSLRWHSRYWKANRP*
Ga0066905_1010165591	3300005713	Tropical Forest Soil	MVWIVGALCLILFGAGIGVIGLSLDMLGYAIVGGIMVLAGIWMLVSLRRHGRYWGENRP*
Ga0066905_1020173802	3300005713	Tropical Forest Soil	MVWIVLALCLILFGAGIGVIGLSVSMLGYAIVGGIMVLAGIWMLVSLRWHSRYWKANRP*
Ga0066905_1021147631	3300005713	Tropical Forest Soil	MVWIVGALCLILFGAGIGFIGFSLEMLGYAVVGGIMMLAGIWMLVSLRRHSRYWKANQP*
Ga0068861_1001610494	3300005719	Switchgrass Rhizosphere	MVWIVGAFCLILFGAGIGFIGLSLDMLGYAIVGGIMVLAGIILLVSMRRHGR
Ga0068861_1004817532	3300005719	Switchgrass Rhizosphere	MLWVVVALCLILFGAGIGVIGLSLNMLGYAIVGGIMALAGIIQLVSIRRNSRY
Ga0066903_1002293331	3300005764	Tropical Forest Soil	MVWIVGALCLMVFGAGLGVIGLSLGMLGYAIVGGIMVLAGIWMLLSIRRQSRYWKVNRP*
Ga0066903_1013222621	3300005764	Tropical Forest Soil	MIWAVGALCLILFGAGIGVIGLSLGMLGYAIVGGIMVLAGIWMLVSLRRHSRYGKENHP*
Ga0068862_1026161352	3300005844	Switchgrass Rhizosphere	MMWIVGAVCLILFGAGIGIVGLTLGMLGYAIVGGIMALFGIFQLVSLRRNMAHWGTKTGSGRS*
Ga0075417_107275741	3300006049	Populus Rhizosphere	MLWIVGACCLILFGAGIGVIGLSLGMLGYAIVGGIMALAGIFMLVSFRRHGRYWGAKRP*
Ga0075432_102461541	3300006058	Populus Rhizosphere	IVGALCLIFFGVGIGIIGFTFGMLGYAMVGGIMALAGIWMLVSLRRHSRFWTQP*
Ga0070715_101148712	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MVWIVGAVCLILFGAGIGVIGLSVDMLGYAIVGGIMVLAGIFLLVSFWRHGHYWGAKRP*
Ga0070712_1002821171	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	WIVGAVCLILFGGGIGVIGLSLGMLGYAIVGGIMVLCGIFQLVSFRRNIPHWGTKNSSGRN*
Ga0075422_101087512	3300006196	Populus Rhizosphere	MLWIVGALCLIFFGVGIGIVGFTFGMLGYAMVGGIMALAGIWMLVSLRRHSRFWTQP*
Ga0097621_1017163432	3300006237	Miscanthus Rhizosphere	MVWIVLAICLILFGAGIGVIGFTLNMLGYAIVGGIMVLAGIWMLVSLRRQSRYWGVKQP*
Ga0079222_125441602	3300006755	Agricultural Soil	MVWIVGAVCLILFGAGIGVIGLSVDMLGYAIVGGIMMLAGIFLLVSFWRHGHYWGAKRP*
Ga0066653_106821372	3300006791	Soil	MVWIVGAVCMILFGGGIGVIGLSLGMLGYAILGGTMVLYGVFLLVSIRRNSRYWSAKRT*
Ga0075428_1000224764	3300006844	Populus Rhizosphere	MVWIVGALCLILFGAGIGVIGLSLNMLGYAIVGGIMVLAGIFLLVSFRLNSRYWGSKRP*
Ga0075428_1005959782	3300006844	Populus Rhizosphere	MVWIVGALCLILFGAGIGVIGLSLNMFGYAIMGGIMVLAGIFLLVSFRKNSSYWGAKRP*
Ga0075428_1008857532	3300006844	Populus Rhizosphere	MVWIVGAVCLILFGGGIGVIGLSLGMLGYAILGGIMALYGVFLLVSIRRQGRYWGAKRT*
Ga0075421_1001918652	3300006845	Populus Rhizosphere	MVWVIGTVCLILFGVGLCFIGLSLGMSGYAILGGIMALYGIFLLMSIGRKSRYWG*
Ga0075430_1007331181	3300006846	Populus Rhizosphere	MVWIVGTVCLILFGVGLCFIGLSLGMSGYAILGGIMALYGIFLLMSIGRKSRYWG*
Ga0075430_1010974031	3300006846	Populus Rhizosphere	WIVGALCLILFGAGIGVIGLSLNMFGYAIMGGIMVLAGIFLLVSFRKNSSYWGAKRP*
Ga0075431_1001210283	3300006847	Populus Rhizosphere	MLWIAWALCLIFFGVVAGVIGFSFDMFGYAIVGGIMVLAGIVLLVPMRRHWDAFFNKREL
Ga0075433_100023932	3300006852	Populus Rhizosphere	MLWIVGALCLIFFGVGIGIIGFTFGMLGYAMVGGIMALAGIWMLVSLRRHSRFWTQP*
Ga0075434_1014243712	3300006871	Populus Rhizosphere	MVWIVLAICLIVFGAGIGVIGFTLNMLGYAIVGGIMVVAGIWMLVSLRRQSRYWGAKQP*
Ga0075434_1026336801	3300006871	Populus Rhizosphere	MVWIVGAVCMILFGGGIGVIGLSLGMLGYTILGGIMVLYGVFLLVSIRRNSRYWSAKRT
Ga0075436_1014714531	3300006914	Populus Rhizosphere	WIVGALCLIFFGVGIGIIGFTFGMLGYAMVGGIMALAGIWMLVSLRRHSRFWTQP*
Ga0105098_105057522	3300009081	Freshwater Sediment	MVWIVGALCLILFGAGIGVIGLTLNMLGYAIVGGIMVLGGIFLLVSFWRHGRYWGAKQP*
Ga0111539_102165184	3300009094	Populus Rhizosphere	MVWIVLALCLILFGGGIGVIGFTLSMLGYAIVGGFMVLAGIWMLVSLRRQSRYWGAKQP*
Ga0111539_102289311	3300009094	Populus Rhizosphere	MVWLVLALCLILFGAGIGVIGLSLDMSGYAIVGGVMVLAGIWMLVSLRRHSRYWKTDRA*
Ga0111539_102927481	3300009094	Populus Rhizosphere	MVWIVGALCLILFGAGIGFIGLSLDMLGYAIVGGIMMLAGIILLVSMRRHGRYWGALNKPNL*
Ga0111539_103926733	3300009094	Populus Rhizosphere	VGAVCMILFGGGIGVIGLSLGMLGYAILGGIMALYGVFLLVSIRRQGRYWGAKRT*
Ga0111539_105402403	3300009094	Populus Rhizosphere	MLWMVGAVCLIFFGVGIGAIGLSVGMLGYAIVGGIMALAGIFLLMSFRRQVRDWKAKQP*
Ga0111539_107110741	3300009094	Populus Rhizosphere	MLWIVGACCLIFFGAGIGVIGLSLGMLGYAIVGGIMALAGIFMLVSIRRHGRYWGAKRP*
Ga0111539_110433602	3300009094	Populus Rhizosphere	MLWIVGALCLIFFGVGIGIIGFTFGMLGYAMVGGIMALAGIWMLVSLRRHSRYWTEP*
Ga0111539_113088832	3300009094	Populus Rhizosphere	MVWIVLAICLIVFGAGIGVIGFTLNMLGYAIVGGIMVVAGIWMLVSLRRQSRYWGAEQP*
Ga0075418_100289977	3300009100	Populus Rhizosphere	MVWIVGALCLVLFGAGIGVIGLSLNMLGYAIVGATMVLAGIFLLVSFRRSSRYWGAKRP*
Ga0075418_102388464	3300009100	Populus Rhizosphere	MVWIVGALCLILFGAGIGVIGLSLNMFGYAIVGGIMVLAGIFLLVSFRRNSRYWGAKRP*
Ga0075418_131024911	3300009100	Populus Rhizosphere	MVWIVGAICMIFFGGGMGVIGLLFGMLGFAILGGILALCGLFLLVSIGRQSDYWWANWWAKRT*
Ga0114129_106097332	3300009147	Populus Rhizosphere	MVWIVGALCLVLFGAGIGVIGLSLGMLGYAIVGGIMALAGIFLLVSFRRSSRYWGAKRP*
Ga0111538_102489422	3300009156	Populus Rhizosphere	MVWIVGAVCMILFGGGIGVIGLSLGMLGYAILGGIMALYGVFLLVSIRRQGRYWGAKRT*
Ga0111538_104775792	3300009156	Populus Rhizosphere	MDRRCPLLWIVGALCLIFFGVGIGIVGFTFSMLGYAMVGGIMALAGIWMLVSLRRHSRYWTEP*
Ga0111538_124426202	3300009156	Populus Rhizosphere	ILFGGGIGVIGLSLGMLGYAILGGIMALYGVFLLVSIRRQGRYWGAKRT*
Ga0075423_106147312	3300009162	Populus Rhizosphere	MVWIVLAICLILFGAGIGVIGFTLNMLGYAIVGGIMVLAGIWMLVSLRRQSRYWGAKQP*
Ga0075423_113614532	3300009162	Populus Rhizosphere	MVWIVGALCLMLFGAGIGVIGFSLGMLGYAIVGGIMVLAGIWMLVSLRRQSRHWRADRP*
Ga0105242_115275691	3300009176	Miscanthus Rhizosphere	MVWIVGAFCLILFGAGIGFIGLSLDMLGYAIVGGIMVLAGIILLVSMRRHGRYWGAPNKTNLSVHGLV*
Ga0105347_12085241	3300009609	Soil	MLWIVGAICMILFGGGIGVIGLSLGMLGYAILGGIMVLYGIFLLVSIGRHTRFWRAKRT*
Ga0126374_107816811	3300009792	Tropical Forest Soil	MLWIVGALCLILFGAGIGVIGLSLDMLGYAIVGGVMVLAGIWMLVSLRRQSRYWTQR*
Ga0105063_10559651	3300009804	Groundwater Sand	MVWIVGAVCMILFGGGIGVIGLSLGMLGYAILGGIMALYGIFLLVSLRRNGR*
Ga0105076_10850161	3300009816	Groundwater Sand	MVWIVGAVCMILFGGGIGVIGLSLNMLGYAIVGGIMVLAGIFLLLSIGRNGRYWGAKRP*
Ga0105062_11009942	3300009817	Groundwater Sand	MVWIVGAVCMILFGGGIGVIGLSLGMLGYAILGGIMALYGIFLLVSLRRNGRYWGAKRT*
Ga0105085_11280771	3300009820	Groundwater Sand	MVWIVGAVCMILFGGGIGVIGLSLGMLGYAILGGIMALYGVYLLVVIRRH
Ga0105058_11175362	3300009837	Groundwater Sand	MVWIIGALCLILFGAGIGVIGLSLNMLGYAIVGGIMVLAGIFLLLSIGRNGRYWGAKRP*
Ga0126380_102415701	3300010043	Tropical Forest Soil	MVWIVGALCLILFGAGIGVIGLSLAMLGYAIIGGVMVLAGLWMLVSLRRHGRYWGENRP*
Ga0126380_107686872	3300010043	Tropical Forest Soil	MVWIVGALCLILLGAGIGVIGLSLDMLGYAIVGGFMVLSGIWMLVSLRRQSRYWTQR*
Ga0126384_104254081	3300010046	Tropical Forest Soil	MVWIVGALCLILFGAGIGVIGLSLAMLGYAIIGGVMVLAGLWMLVSLRRHSRYWQANRH*
Ga0126384_108931561	3300010046	Tropical Forest Soil	LMIWAVGALCLILFGAGIGVIGLSLGMLGYAIVGGIMVLAGIWMLVSLRRHSRYGKENHP
Ga0126382_100409264	3300010047	Tropical Forest Soil	MVWIVLALCLILFGAGIGVIGLVIDMLGYAIVGGIMVLAGIWMLVSMRRQSRYWRADQP*
Ga0126382_100752702	3300010047	Tropical Forest Soil	MLWIVGALCLILFGAGIGVIGLSLAMLGYAIIGGVMVLAGLWMLVSLRRHSRYWQANRH*
Ga0126382_102331623	3300010047	Tropical Forest Soil	MVWIVLALCLILFGAGIGVIGLSVSMPGYAIVGGIMVLAGIWMLVSLRRHSRYWSTNTGE
Ga0126376_117205711	3300010359	Tropical Forest Soil	MVWIVGALCLIVFGAGIGVIGLSLDMLGYAIVGGFMVLSGIWMLVSLRRQSRYWTQR*
Ga0126377_100635423	3300010362	Tropical Forest Soil	MLWMVGALCLILFGAGIGIIGLVLDMLGYAIVGGIMVLAGIWMLVSLRRHSRYWRADRP*
Ga0126377_102087152	3300010362	Tropical Forest Soil	MVWIVGALCLILFGAGIGVIGLSLDMLGYAIVGGFMVLSGIWMLVSLRRQSRYWTQR*
Ga0126377_120551411	3300010362	Tropical Forest Soil	MVWIVLALCLILFGAGIGVIGLSVSMLGYAIVGGIMVLAGIWMLVSLRRHSRYWSANTGE
Ga0126377_121918142	3300010362	Tropical Forest Soil	MVWIVGALCLILFGAGIGFIGFSLEMLGYAVVGGIMMLAGIWMLVSLRRHSRY
Ga0126377_125300611	3300010362	Tropical Forest Soil	LMVWIVGALCLILFGAGIGVIGLSLDMLGYAIVGGIMVLAGIWMLVSLRRHGRYWGENRP
Ga0126377_126573831	3300010362	Tropical Forest Soil	MVWIVGALCLILFGAGIGVIGLSLDMLGYAIVGGIMVLSGIWMLVSLRRQSRYWTQR*
Ga0126377_127635851	3300010362	Tropical Forest Soil	MVWIVGAFCLILFGVGLGIIGLFLNLFGWAIVGGIMVLTGVFLLVSISRNS
Ga0134125_116511921	3300010371	Terrestrial Soil	MVWIVGACCLILFGAGIGVIGLSLDMLGYAIVGGIMVLAGILMLVSFRRHGRYWGAKQP*
Ga0134126_113690611	3300010396	Terrestrial Soil	MVWIVGACCLILFGAGIGVIGLSLDMLGYAIVGGIMVLAGILMLVSFRRHGRYGGAKQP*
Ga0126375_106975083	3300012948	Tropical Forest Soil	MIWAVGALCLILFGAGIGVIGLSLGMLGYAIVGGIMVLAGIWMLVSLRRHS
Ga0164301_106413712	3300012960	Soil	MVWIVGAWCLILFGAGIGIIGLSLSMLGYAIVGGIMVLAGIFLLVSFYAGIARYWRAKRP
Ga0164301_107392781	3300012960	Soil	MVWIVGAVCMILFGGGIGVIGLSVGMLGYAILGGIMVLYGVFLLVSIRRNSRYWSAKRT*
Ga0164305_104863452	3300012989	Soil	ILFGGGIGAIGLSLGMLGYAILGGIMVLYGVFLLVSIRRNSRYWSAKRT*
Ga0157378_127102492	3300013297	Miscanthus Rhizosphere	MVWIVGAVCIILFGGGIGVIGLSLGMLGYAIVGGIMALCGIFQLVSFRRNFRYWGAKTGSSRN*
Ga0157376_100884543	3300014969	Miscanthus Rhizosphere	MVWIVLAICLILFGAGIGVIGFTLNMLGYAIVGGIMVLAGIWMLVSLRRQSRYWG
Ga0132258_1000103735	3300015371	Arabidopsis Rhizosphere	MVWIVGALCLIFFGAGIGLIGLSLGMLGYAIVGGIMALAGLFLLVSFRRQGRYWGAKRP*
Ga0132258_106465491	3300015371	Arabidopsis Rhizosphere	MVWIVGAWCLILFGAGIGVIGLSLSMFGYAILGGVMILAGIFLLVSLYGGIGRYWGAKRP
Ga0132258_109844693	3300015371	Arabidopsis Rhizosphere	MVWIVGAVCLILFGAGIGVIGLSLGMLGYAIVGGIMALCGIFQLVSFRRNFRYWGAKTGSGRT*
Ga0132258_124125362	3300015371	Arabidopsis Rhizosphere	MAWIVGAVCMILFGGGICVIGLSIGMLGYVILGGIMTLYGIFLLVSLRRNSRYWGTKQS*
Ga0132256_1018268742	3300015372	Arabidopsis Rhizosphere	MVWLVLALCLILFGAGIGVIGLSRDMSGYAIVGGVMVLAGIWMLVSLRRHSRYW
Ga0132257_1005056472	3300015373	Arabidopsis Rhizosphere	WIVLAICLILFGAGIGVIGFTLNMLGYAIVGGIMVLAGIWMLVSLRRQSRYWGVKQP*
Ga0132257_1010272892	3300015373	Arabidopsis Rhizosphere	MVWIVGAVCMILFGGGIGVIGLSLGMLGYALLGGTMVLYGVFLLVSIRRNSRYWNAKRT*
Ga0132255_1005363912	3300015374	Arabidopsis Rhizosphere	MVWIVLAICLILFGAGIAVIGFTLNMLGYAIVGGIMVLAGIWMLVSLRRQSRYWGAKQP*
Ga0132255_1042439001	3300015374	Arabidopsis Rhizosphere	MLWIVWALCLILFGAGISVIGLSLDMLGYAIGGGIMVLAGIILLVSIRRQGRYWGA
Ga0184626_100213254	3300018053	Groundwater Sediment	MVWIVGAVCMILFGGGIGVIGLSLGMLGYAILGGIMSIRRHGRYWGAKRT
Ga0190270_113378871	3300018469	Soil	MLWIVGAICMILFGGGIGVIGLSLGMLGYAILGGIMVLYGIFLLVSIGRHTRFWRAKRT
Ga0180110_11645991	3300019208	Groundwater Sediment	MLWIVGAVCMILFGGGIGVIGLSLGMLGYGILGGIMLLYGIFLLVSIGRHSRFWRAKRT
Ga0180114_12356362	3300019232	Groundwater Sediment	MLWIVGAVCMILFGGGIGVIGLSLGMLGYAILGGIMVLYGIFLLVSVGRHTRFWRAKRT
Ga0180113_13784131	3300020065	Groundwater Sediment	MLWIVGAVCMILFGGGIGVIGLSLGMLGYGILGGIMVLYGIFLLVSIGRHSRFWRAKRT
Ga0180108_11823452	3300020066	Groundwater Sediment	LWIVGAVCMILFGGGIGVIGLSLGMLGYGILGGIMVLYGIFLLVSIGRHSRFWRAKRT
Ga0210404_102527701	3300021088	Soil	MVWIVGAVCLILFGGGIGVIGLSLGMLGYAIVGGIMVLCGIFQLVSFRRNIPHWGTKNSSGRN
Ga0207685_101009292	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MVWIVGAVCLILFGAGIGVIGLSVDMLGYAIVGGIMVLAGIFLLVSFWRHGHYWGAKRP
Ga0207645_105782822	3300025907	Miscanthus Rhizosphere	VALCLILFGAGIGVIGLSLNMLGYAIVGGIMALAGIIQLVSIRRNSRYRGAMRP
Ga0207693_114060221	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	WIVGAVCLILFGGGIGVIGLSLGMLGYAIVGGIMVLCGIFQLVSFRRNIPHWGTKNSSGR
Ga0207668_115563171	3300025972	Switchgrass Rhizosphere	MLWVVVALCLILFGAGIGVIGLSLNMLGYAIVGGIMALAGIIQLVSIRRNSRYRGAMRP
Ga0207678_100841422	3300026067	Corn Rhizosphere	MVWIVLAICLILFGAGIGVIGFTLNMLGYAIVGGIMLLAGIWMLVSLRRQSRYWGAKQP
Ga0207675_1001266192	3300026118	Switchgrass Rhizosphere	MVWIVGAFCLILFGAGIGFIGLSLDMLGYAIVGGIMVLAGIILLVSMRRHGRYRGAPNKSNL
Ga0209481_102016742	3300027880	Populus Rhizosphere	MVWIVGALCLILFGAGIGVIGLSLNMLGYAIVGGIMVLAGIFLLVSFRLNSRYWGSKRP
Ga0209481_103865501	3300027880	Populus Rhizosphere	MVWIVGALCLILFGAGIGVIGLSLNMFGYAIMGGIMVLAGIFLLVSFRKN
Ga0207428_100877402	3300027907	Populus Rhizosphere	MLWIVGALCLIFFGVGIGIIGFTFGMLGYAMVGGIMALAGIWMLVSLRRHSRFWTQP
Ga0207428_101587681	3300027907	Populus Rhizosphere	LMVWVVGTVCLILFGVGLCFIGLSLGMSGYAILGGIMALYGIFLLMSIGRKSRYWG
Ga0207428_104151701	3300027907	Populus Rhizosphere	MVWIVGAVCMILFGGGIGVIGLSLGMLGYAILGGIMALYGVFLLVSIRRQGRYWGAKRT
Ga0209382_103544613	3300027909	Populus Rhizosphere	MLWIAWALCLIFFGVVAGVIGFSFDMLGYAIVGGIMVLAGIVLLVPMRRHWDAFFNKREL
Ga0209382_104528812	3300027909	Populus Rhizosphere	MVWIVGALCLILFGAGIGVIGLSLNMFGYAIMGGIMVLAGIFLLVSFRKNSSYWGAKRP
Ga0209382_105108841	3300027909	Populus Rhizosphere	MVWVIGTVCLILFGVGLCFIGLSLGMSGYAILGGIMALYGIFLLMSIGRKSRYWG
Ga0268266_106970902	3300028379	Switchgrass Rhizosphere	MLWVVVALCLILFGAGIGVIGLSLNMLGYAIFGGIMALAGIIQLVSIRRNSRYRGAMRP
Ga0247822_117477192	3300028592	Soil	MVWIVGTVCLILFGVGLCFIGLSLGMSGYAILGGIMALYGIFLLMSIGRKSRYWG
Ga0307500_100782601	3300031198	Soil	MVWIVGALCLMLFGTEIGLIALSLDMLGYAIVAGIMVLAGIFFLVSFRRQGRYWGAKQR
Ga0310887_108655991	3300031547	Soil	MVWIVGALCLIFFGAGIGLIGLSLGMVGYAIVGGVMALCGIFQLISFRRNFRY
Ga0307469_101943293	3300031720	Hardwood Forest Soil	MVWIVLAICLILFGAGIGVIGFTLNMLGYAIVGGIMVLAGIWMLVSLRRQSRYWSAKQP
Ga0307468_1000162955	3300031740	Hardwood Forest Soil	MVWIVGAVCLILFGGGIGVIGLSLGMLGYAIVGGIMALCGIFQLVSFRRNFRYWGAKTGSGRT
Ga0307468_1000168342	3300031740	Hardwood Forest Soil	MVWIVGAFCLILFGAGIGFIGLSLDMLGYAIVGGIMVLAGIILLVSMRRHGRYWGAPNKSNL
Ga0307468_1002846551	3300031740	Hardwood Forest Soil	MLWMVGAVCLIFFGVGIGAIGLSVGMLGYAIVGGIMALAGIFLLMSFRRQVRDWKAKQP
Ga0307468_1021416231	3300031740	Hardwood Forest Soil	MLWMVGAVCLIFFGAGIGAIGLSVGMLGYAIVGGIMALAGIFLLVSFRRQVRD
Ga0310904_108717301	3300031854	Soil	ICLIVFGAGIGVIGFTLNMLGYAIVGGIMVVAGIWMLVSLRRQSRYWGAKQP
Ga0310900_103636282	3300031908	Soil	MVWIVLAICLILFGAGIGVIGFTLNMLGYAIVGGIMLLAGIWMLVSLRRQSRYWGVKQP
Ga0310902_102815332	3300032012	Soil	MVWIVGALCLIFFGAGIGLIGLSLGMLGYAIVGGIMALAGLFLLVSFRRQGRYWGAKRP
Ga0310906_108458801	3300032013	Soil	MVWIVLAICLILFGAGIGVIGFTLNMLGYAIVGGIMVLAGIWMLVSLRRQSRYWGVKQP
Ga0310890_107842411	3300032075	Soil	MVWIVLAICLIVFGAGIGVIGFTLNMLGYAIVGGIMVVAGIWMLVSLRRQSRYWGAKQP
Ga0307472_1007166572	3300032205	Hardwood Forest Soil	MVWIVGAFCLILFGAGIGFIGLSLDMLGYAIVGGIMVLAGIILLVSMRRHGRYWGALNKSNL
Ga0307472_1016164851	3300032205	Hardwood Forest Soil	MLWIVGALCLIFFGVGIGIIGFTFGMLGYAIVGGLMALAGIWMLVSLRRHSRYWTQP
Ga0307472_1018770541	3300032205	Hardwood Forest Soil	MVWIVLAICLILFGAGIGVIGFTLNMLGYAIVGGIMVLAGIWMLVSLR
Ga0247830_103587434	3300033551	Soil	YLGVAELTGRWLMVWIVGAVCMILFGGGIGVIGLSLGMLGYAILGGVMALYGIFLLMSLRRNNWGAKRT
Ga0373950_0097578_103_276	3300034818	Rhizosphere Soil	MLWIVGALCLIFFGVGIGIIGFTFGMLGYAIVGGLMALEGIWMLVSLRRHSRYWTQP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052918

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences