Metagenome / Metatranscriptome Family F052856

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F052856
Family Type	Metagenome / Metatranscriptome
Number of Sequences	142
Average Sequence Length	63 residues
Representative Sequence	MVHQSPVQRTLVLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGKTLSFEVDIR
Number of Associated Samples	117
Number of Associated Scaffolds	142

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	39.86 %
% of genes near scaffold ends (potentially truncated)	47.18 %
% of genes from short scaffolds (< 2000 bps)	88.73 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (76.056 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (9.155 % of family members)
Environment Ontology (ENVO)	Unclassified (56.338 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (70.423 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.58% β-sheet: 23.08% Coil/Unstructured: 59.34%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 142 Family Scaffolds
PF00005	ABC_tran	14.08
PF03548	LolA	12.68
PF04055	Radical_SAM	2.82
PF02163	Peptidase_M50	0.70
PF13519	VWA_2	0.70
PF00990	GGDEF	0.70
PF13353	Fer4_12	0.70

COG ID	Name	Functional Category	% Frequency in 142 Family Scaffolds
COG2834	Outer membrane lipoprotein-sorting protein	Cell wall/membrane/envelope biogenesis [M]	12.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.06 %
Unclassified	root	N/A	23.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.06 %
Unclassified	root	N/A	23.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.06 %
Unclassified	root	N/A	23.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	66.90 %
Unclassified	root	N/A	23.94 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	2.11 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.94 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	19.72 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	6.34 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.11 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.94 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	19.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.63 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.11 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.70 %
Acidobacteria bacterium OLB17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium OLB17	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.94 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	19.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.63 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.11 %
Thermales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales	0.70 %
Acidobacteria bacterium OLB17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium OLB17	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.94 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	13.38 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	6.34 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.63 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.11 %
Thermaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae	0.70 %
Acidobacteria bacterium OLB17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium OLB17	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.94 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	13.38 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	6.34 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.63 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.11 %
Thermus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	0.70 %
Acidobacteria bacterium OLB17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium OLB17	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.94 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	13.38 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	6.34 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.63 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.11 %
unclassified Thermus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus → unclassified Thermus	0.70 %
Acidobacteria bacterium OLB17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium OLB17	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.94 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	13.38 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	6.34 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.63 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.11 %
Thermus sp. CCB_US3_UF1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus → unclassified Thermus → Thermus sp. CCB_US3_UF1	0.70 %
Acidobacteria bacterium OLB17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium OLB17	0.70 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_10581075	All Organisms → cellular organisms → Bacteria → Acidobacteria	589	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101762920	All Organisms → cellular organisms → Bacteria → Acidobacteria	1158	Open in IMG/M
3300000953\|JGI11615J12901_10153656	All Organisms → cellular organisms → Bacteria → Acidobacteria	688	Open in IMG/M
3300000956\|JGI10216J12902_115155780	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	905	Open in IMG/M
3300002459\|JGI24751J29686_10000003	All Organisms → cellular organisms → Bacteria	157815	Open in IMG/M
3300002899\|JGIcombinedJ43975_10040469	All Organisms → cellular organisms → Bacteria → Acidobacteria	773	Open in IMG/M
3300003267\|soilL1_10085847	All Organisms → cellular organisms → Bacteria	1507	Open in IMG/M
3300003319\|soilL2_10011996	All Organisms → cellular organisms → Bacteria	10819	Open in IMG/M
3300003319\|soilL2_10045199	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3501	Open in IMG/M
3300004463\|Ga0063356_101986019	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	879	Open in IMG/M
3300004479\|Ga0062595_101610366	Not Available	606	Open in IMG/M
3300004480\|Ga0062592_102632458	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300004643\|Ga0062591_100700706	All Organisms → cellular organisms → Bacteria → Acidobacteria	916	Open in IMG/M
3300004643\|Ga0062591_100811255	All Organisms → cellular organisms → Bacteria → Acidobacteria	865	Open in IMG/M
3300005289\|Ga0065704_10754573	Not Available	540	Open in IMG/M
3300005290\|Ga0065712_10399928	Not Available	732	Open in IMG/M
3300005290\|Ga0065712_10513346	Not Available	596	Open in IMG/M
3300005293\|Ga0065715_10823028	Not Available	601	Open in IMG/M
3300005328\|Ga0070676_10618890	All Organisms → cellular organisms → Bacteria → Acidobacteria	783	Open in IMG/M
3300005331\|Ga0070670_100000167	All Organisms → cellular organisms → Bacteria	59452	Open in IMG/M
3300005331\|Ga0070670_101965740	Not Available	539	Open in IMG/M
3300005339\|Ga0070660_100620468	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
3300005343\|Ga0070687_100858279	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300005344\|Ga0070661_101311142	Not Available	607	Open in IMG/M
3300005345\|Ga0070692_10755594	All Organisms → cellular organisms → Bacteria → Acidobacteria	660	Open in IMG/M
3300005353\|Ga0070669_100210539	All Organisms → cellular organisms → Bacteria	1533	Open in IMG/M
3300005356\|Ga0070674_101023642	All Organisms → cellular organisms → Bacteria → Acidobacteria	726	Open in IMG/M
3300005356\|Ga0070674_101110065	Not Available	699	Open in IMG/M
3300005365\|Ga0070688_101416340	All Organisms → cellular organisms → Bacteria → Acidobacteria	564	Open in IMG/M
3300005366\|Ga0070659_102133182	Not Available	504	Open in IMG/M
3300005367\|Ga0070667_102141828	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300005438\|Ga0070701_10719237	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300005440\|Ga0070705_100593170	All Organisms → cellular organisms → Bacteria → Acidobacteria	856	Open in IMG/M
3300005441\|Ga0070700_100383842	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1051	Open in IMG/M
3300005457\|Ga0070662_100758018	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300005544\|Ga0070686_101740143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus → unclassified Thermus → Thermus sp. CCB_US3_UF1	530	Open in IMG/M
3300005545\|Ga0070695_100310603	All Organisms → cellular organisms → Bacteria → Acidobacteria	1169	Open in IMG/M
3300005546\|Ga0070696_101486179	Not Available	580	Open in IMG/M
3300005547\|Ga0070693_100127759	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1585	Open in IMG/M
3300005547\|Ga0070693_101566448	Not Available	517	Open in IMG/M
3300005563\|Ga0068855_102350461	Not Available	533	Open in IMG/M
3300005564\|Ga0070664_100672703	All Organisms → cellular organisms → Bacteria → Acidobacteria	963	Open in IMG/M
3300005577\|Ga0068857_101210013	Not Available	732	Open in IMG/M
3300005577\|Ga0068857_101617844	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300005616\|Ga0068852_100320301	All Organisms → cellular organisms → Bacteria	1505	Open in IMG/M
3300005617\|Ga0068859_100220640	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1983	Open in IMG/M
3300005718\|Ga0068866_10807539	All Organisms → cellular organisms → Bacteria → Acidobacteria	653	Open in IMG/M
3300005841\|Ga0068863_101253359	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	748	Open in IMG/M
3300005842\|Ga0068858_100280130	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1588	Open in IMG/M
3300005842\|Ga0068858_100901653	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300005842\|Ga0068858_101325096	All Organisms → cellular organisms → Bacteria → Acidobacteria	709	Open in IMG/M
3300005842\|Ga0068858_101967343	Not Available	578	Open in IMG/M
3300005844\|Ga0068862_100291870	All Organisms → cellular organisms → Bacteria → Acidobacteria	1498	Open in IMG/M
3300005875\|Ga0075293_1049343	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300005879\|Ga0075295_1013872	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium OLB17	882	Open in IMG/M
3300005885\|Ga0075284_1040909	Not Available	630	Open in IMG/M
3300005886\|Ga0075286_1020590	All Organisms → cellular organisms → Bacteria → Acidobacteria	829	Open in IMG/M
3300006169\|Ga0082029_1151274	All Organisms → cellular organisms → Bacteria → Acidobacteria	1354	Open in IMG/M
3300006755\|Ga0079222_10339610	All Organisms → cellular organisms → Bacteria → Acidobacteria	1007	Open in IMG/M
3300006845\|Ga0075421_100316681	All Organisms → cellular organisms → Bacteria → Acidobacteria	1892	Open in IMG/M
3300006853\|Ga0075420_100412438	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300009036\|Ga0105244_10082965	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1585	Open in IMG/M
3300009036\|Ga0105244_10449046	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300009092\|Ga0105250_10261088	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	742	Open in IMG/M
3300009093\|Ga0105240_10634846	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1172	Open in IMG/M
3300009093\|Ga0105240_10771773	All Organisms → cellular organisms → Bacteria → Acidobacteria	1043	Open in IMG/M
3300009098\|Ga0105245_12190145	All Organisms → cellular organisms → Bacteria → Acidobacteria	606	Open in IMG/M
3300009101\|Ga0105247_11860320	Not Available	502	Open in IMG/M
3300009156\|Ga0111538_12944286	Not Available	595	Open in IMG/M
3300009545\|Ga0105237_12626238	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300010045\|Ga0126311_10027870	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	3444	Open in IMG/M
3300010047\|Ga0126382_11052785	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	717	Open in IMG/M
3300010146\|Ga0126320_1045406	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	964	Open in IMG/M
3300010360\|Ga0126372_12683356	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300010373\|Ga0134128_13166567	Not Available	505	Open in IMG/M
3300010375\|Ga0105239_13209505	Not Available	532	Open in IMG/M
3300010396\|Ga0134126_13101260	Not Available	501	Open in IMG/M
3300010397\|Ga0134124_10166209	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1980	Open in IMG/M
3300010399\|Ga0134127_10122006	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2321	Open in IMG/M
3300010400\|Ga0134122_10460670	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1140	Open in IMG/M
3300010400\|Ga0134122_12493694	Not Available	566	Open in IMG/M
3300010403\|Ga0134123_10774880	All Organisms → cellular organisms → Bacteria → Acidobacteria	949	Open in IMG/M
3300011119\|Ga0105246_10956816	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	772	Open in IMG/M
3300011119\|Ga0105246_12151796	All Organisms → cellular organisms → Bacteria → Acidobacteria	542	Open in IMG/M
3300012212\|Ga0150985_113038050	All Organisms → cellular organisms → Bacteria → Acidobacteria	980	Open in IMG/M
3300012469\|Ga0150984_111234529	All Organisms → cellular organisms → Bacteria → Acidobacteria	995	Open in IMG/M
3300012960\|Ga0164301_11466831	All Organisms → cellular organisms → Bacteria → Acidobacteria	560	Open in IMG/M
3300012961\|Ga0164302_10455660	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	890	Open in IMG/M
3300013306\|Ga0163162_11251394	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	843	Open in IMG/M
3300013306\|Ga0163162_11705996	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	719	Open in IMG/M
3300013307\|Ga0157372_10276503	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1952	Open in IMG/M
3300013307\|Ga0157372_13155127	Not Available	526	Open in IMG/M
3300013308\|Ga0157375_10734422	All Organisms → cellular organisms → Bacteria → Acidobacteria	1139	Open in IMG/M
3300014325\|Ga0163163_11142501	All Organisms → cellular organisms → Bacteria → Acidobacteria	842	Open in IMG/M
3300014326\|Ga0157380_11588468	All Organisms → cellular organisms → Bacteria → Acidobacteria	709	Open in IMG/M
3300014487\|Ga0182000_10363593	Not Available	628	Open in IMG/M
3300015077\|Ga0173483_10875445	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300015373\|Ga0132257_102318845	Not Available	696	Open in IMG/M
3300018476\|Ga0190274_10506139	All Organisms → cellular organisms → Bacteria → Acidobacteria	1209	Open in IMG/M
3300025900\|Ga0207710_10226080	All Organisms → cellular organisms → Bacteria → Acidobacteria	930	Open in IMG/M
3300025907\|Ga0207645_10287710	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1092	Open in IMG/M
3300025908\|Ga0207643_10161433	All Organisms → cellular organisms → Bacteria → Acidobacteria	1348	Open in IMG/M
3300025918\|Ga0207662_10220344	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1235	Open in IMG/M
3300025921\|Ga0207652_10870724	All Organisms → cellular organisms → Bacteria → Acidobacteria	797	Open in IMG/M
3300025923\|Ga0207681_10013012	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	5144	Open in IMG/M
3300025932\|Ga0207690_10889551	All Organisms → cellular organisms → Bacteria → Acidobacteria	738	Open in IMG/M
3300025932\|Ga0207690_10900217	All Organisms → cellular organisms → Bacteria → Acidobacteria	734	Open in IMG/M
3300025933\|Ga0207706_10111985	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2401	Open in IMG/M
3300025934\|Ga0207686_10484255	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	957	Open in IMG/M
3300025935\|Ga0207709_10123111	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1755	Open in IMG/M
3300025935\|Ga0207709_10537122	All Organisms → cellular organisms → Bacteria → Acidobacteria	918	Open in IMG/M
3300025936\|Ga0207670_10197232	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1527	Open in IMG/M
3300025938\|Ga0207704_10120737	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1793	Open in IMG/M
3300025938\|Ga0207704_11388177	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300025941\|Ga0207711_10231582	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1692	Open in IMG/M
3300025942\|Ga0207689_10447483	All Organisms → cellular organisms → Bacteria → Acidobacteria	1079	Open in IMG/M
3300025960\|Ga0207651_10118713	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2001	Open in IMG/M
3300025960\|Ga0207651_10820244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	825	Open in IMG/M
3300025981\|Ga0207640_10192119	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1540	Open in IMG/M
3300025981\|Ga0207640_11179695	Not Available	680	Open in IMG/M
3300026035\|Ga0207703_10075478	All Organisms → cellular organisms → Bacteria → Acidobacteria	2794	Open in IMG/M
3300026035\|Ga0207703_10422113	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1241	Open in IMG/M
3300026088\|Ga0207641_12438761	Not Available	522	Open in IMG/M
3300026095\|Ga0207676_10055935	All Organisms → cellular organisms → Bacteria → Acidobacteria	3100	Open in IMG/M
3300026095\|Ga0207676_10335849	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1392	Open in IMG/M
3300026116\|Ga0207674_10162034	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2191	Open in IMG/M
3300026116\|Ga0207674_11554055	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300026142\|Ga0207698_11607486	All Organisms → cellular organisms → Bacteria → Acidobacteria	665	Open in IMG/M
3300027766\|Ga0209796_10273868	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300027775\|Ga0209177_10188288	All Organisms → cellular organisms → Bacteria → Acidobacteria	727	Open in IMG/M
3300027787\|Ga0209074_10069538	All Organisms → cellular organisms → Bacteria → Acidobacteria	1124	Open in IMG/M
3300028381\|Ga0268264_11039472	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300031547\|Ga0310887_10967439	Not Available	542	Open in IMG/M
3300031562\|Ga0310886_10956535	Not Available	547	Open in IMG/M
3300032075\|Ga0310890_11504292	Not Available	555	Open in IMG/M
3300032421\|Ga0310812_10353174	Not Available	658	Open in IMG/M
3300033412\|Ga0310810_10935998	All Organisms → cellular organisms → Bacteria → Acidobacteria	754	Open in IMG/M
3300034667\|Ga0314792_108427	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	700	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	59.15%
Environmental	Environmental	40.85%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	59.15%
Terrestrial	Environmental → Terrestrial	40.14%
Aquatic	Environmental → Aquatic	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	40.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.99%
Rhizoplane	Host-Associated → Plants → Rhizoplane	26.76%
Freshwater	Environmental → Aquatic → Freshwater	0.70%
Roots	Host-Associated → Plants → Roots	0.70%
Phylloplane	Host-Associated → Plants → Phylloplane	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	22.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.20%
Soil	Host-Associated → Plants → Rhizosphere → Soil	14.79%
Loam	Environmental → Terrestrial → Soil → Loam	10.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.23%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.82%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.70%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.70%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	22.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	14.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.56%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.23%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.82%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.70%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.70%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	9.15%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.04%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.34%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.63%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.23%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.82%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.11%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	2.11%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.11%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.41%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.41%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.41%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.70%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.70%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.70%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.70%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.70%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.70%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.70%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005875	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101	Environmental	Open in IMG/M
3300005879	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301	Environmental	Open in IMG/M
3300005885	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_401	Environmental	Open in IMG/M
3300005886	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205	Environmental	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027766	Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034667	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_105810752	3300000363	Soil	SWFSGGERAQSMVHQSPVQRTLLLRPEVIGNEEDKGRIEQQVRTLTGRTDAEVLAIRKITGPDGNTLSFEVDIR*
INPhiseqgaiiFebDRAFT_1017629201	3300000364	Soil	SGGERVENMVHPSPVAKTLLLSAEVIGNQEDRGRIEQQVKVMTGRTDFEVLAVRPVRDTEGRTRSFEVDIR*
JGI11615J12901_101536562	3300000953	Soil	MTLLLTPEVVGIEGDKGRIEQHVRALVGRTDVEVLAVRKIPGPDGRTRSFEVDIR*
JGI10216J12902_1151557801	3300000956	Soil	FLTPKRWFSGGERVQNQMHQSPVAATLLLSPEVVGTEGDKTRIEEQVKALTGRTNVEVMEVRPIRYPDGRTRSFEVDIR*
JGI24751J29686_10000003106	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	LRPEVIGNEEDKGRIEQQVRTLTGRTDAEVLAIRKITGPDGNTLSFEVDIR*
JGIcombinedJ43975_100404691	3300002899	Soil	MVHQSPVQRTLVLHPEVVGNEEDKGRIEQQVKALTGRTDTEVLAVRKITGPDGKTLSFEVDIR*
soilL1_100858471	3300003267	Sugarcane Root And Bulk Soil	MVHPSPVARTLVLTPEVVGKEEDKSRIEQRVRELLRRTDVEVLDVRKVAGPDGKTQSFEVDIR*
soilL2_100119965	3300003319	Sugarcane Root And Bulk Soil	MTLLLTPEVVGSEGDKGRIEQHVKALMGRTDVEVLAVRKIPGPDGRTRSFEVDIR*
soilL2_100451993	3300003319	Sugarcane Root And Bulk Soil	QSMVHQSPVPMTLLLQPEVVGIEGDKGRIEQHVKALMRRDDVEVLNIRKIPGPDGKTRSFEVDIR*
Ga0063356_1019860192	3300004463	Arabidopsis Thaliana Rhizosphere	MVHPSPVVQTLTLVLRPEVVGNEGDRDKIEQHVRTLMGRPDVEVLDIRKIPGPDGKTRSFEVDIR*
Ga0062595_1016103662	3300004479	Soil	MTLLLLPEVIGNEGDRSRIKEHVKALTGRTDVEVLAVRKIPGPDGKTRSFEVDIR*
Ga0062592_1026324581	3300004480	Soil	MTLFLKPEVIGNEGDKGKIEQHVKALMGRDDVEVLNIRKIPGPDGKTRGFEVDIR*
Ga0062591_1007007062	3300004643	Soil	MVHQSPVQRTLILRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAIRKITGPDGRTLSFEVDIR*
Ga0062591_1008112552	3300004643	Soil	MTLLLKPEVVGYEEDRVRIEQHVKALMRRDDVQVLNIRKIPGPDGKTSSFEVDIR*
Ga0065704_107545732	3300005289	Switchgrass Rhizosphere	ERVQSMVHQSPVPMTLFLKPEVIGNEGDKGKIEQHVKALMGRDDVEVLNIRKIPGPDGKTRGFEVDIR*
Ga0065712_103999282	3300005290	Miscanthus Rhizosphere	WFTSGERALSMVHQSHVARTLVLTPEVIGNEEDRSCIEQRVKELLRRTDVEVLNVRKVSGPDGKTQSFEVDIR*
Ga0065712_105133461	3300005290	Miscanthus Rhizosphere	IFLTPKGWFAGGEPGQNMTHQSPVAQTLLLPAEVIGNEEDKGQIEERVKALTGRTNVEVLAVRKITHPDGRARGFEVDIR*
Ga0065715_108230281	3300005293	Miscanthus Rhizosphere	SGGEPAHSMVHQSPVPMTLLLKPEVVGYEEDRVRIEQHVKALMRRDDVQVLNIRKIPGPDGKTSSFEVDIR*
Ga0070676_106188902	3300005328	Miscanthus Rhizosphere	MVHQSPVQRTLLLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGRTLSFEVDIR*
Ga0070670_10000016729	3300005331	Switchgrass Rhizosphere	MVHQSPVQRTLLLRPEVIGNEEDKGRIEQQVRTLTGRTDAEVLAIRKITGPDGNTLSFEVDIR*
Ga0070670_1019657402	3300005331	Switchgrass Rhizosphere	LTPKSWFTGGERAQSMVHQSPVQRTLVLTPEVIGKEEDKSRIEQRVRELLRRTDVEVLDVRKIPGPDGKTQSFEVDIR*
Ga0070666_106893121	3300005335	Switchgrass Rhizosphere	VVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGRTLSFEVDIR*
Ga0070660_1006204681	3300005339	Corn Rhizosphere	MVHQSPIPITLLLTPEVVGNEGDKGRIEQHVKALMRRTDVEVLAVRKIPGPDGKTRSLEVDIR*
Ga0070687_1008582792	3300005343	Switchgrass Rhizosphere	MVHPSPVARTLVLTPEVIGKEEDKTRIEQRVRELLRRTDIEVLDIRKVAGPDGKTQSFEVDIR*
Ga0070661_1013111421	3300005344	Corn Rhizosphere	PEVVGYEEDRVRIEQHVKALMRRDDVQVLNIRKIPGPDGKTSSFEVDIR*
Ga0070692_107555941	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MVHQSPVPMTLLLKPEVVGYEEDRVRIEQHVKALMRRDDVQVLNIRKIPGPDGKTSSFEVDIR*
Ga0070692_113457441	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	EVIGNEGDRSRIEEHVKALTGRTDVEVLAVRRIPGPDGKTRSFEVDIR*
Ga0070669_1002105391	3300005353	Switchgrass Rhizosphere	MVHQSPVQRTLLLQPEVVGNEEDKGRIEQQVKALTGRTDTEVLAVRKITGPDGRTLSFEVDIR*
Ga0070674_1010236421	3300005356	Miscanthus Rhizosphere	MVHQSPVQRTLLLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDG
Ga0070674_1011100652	3300005356	Miscanthus Rhizosphere	FSGGERAQSMVHQSPVQRTLVLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGKTLSFEVDIR*
Ga0070688_1014163401	3300005365	Switchgrass Rhizosphere	LRPEVVGNEEDKGRIEQQVRALTGRADAEVLAVRKITGPDGRTLSFEVDIR*
Ga0070659_1021331822	3300005366	Corn Rhizosphere	MVHQSPIPITLLLTPEVVGNEGDKDRIEEHVRALLRRTDVEVLAVRKIPGPDGKTRSFEVDIR*
Ga0070667_1021418281	3300005367	Switchgrass Rhizosphere	LRPEVVGNEEDKGRIEQQVRALTGRTDAEVLAVRKITGPDGRTLSFEVDIR*
Ga0070701_107192371	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MVHQSPVQRTLVLRPEVVGNEEDKGRIEQQVKTLTGRTDAEVLAVRKITGPDGKTLSFEVDIR*
Ga0070705_1005931702	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MVHQSPVPMTLLLKPEVVGYEEDRVRIEQHVKALMRRDDVEVLNIRKIPGPDGKTSSFEVDIR*
Ga0070700_1003838422	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MVHQSPVQRTLLLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGKTLSFEVDIR*
Ga0070662_1007580181	3300005457	Corn Rhizosphere	MVHQSPVQRTLVLRPEVVGTEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGKTLSFEVDIR*
Ga0070686_1017401431	3300005544	Switchgrass Rhizosphere	MVHPSPVARTLVLTPEVIGKEEDKTRIEQRVRELLRRTDIEVLDVRKVAGPDGKTQSFEVDIR*
Ga0070695_1003106032	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	SGERAQRTGHQSPVAVTLVLTPEVVGNEEDNGRIEQQIKALTGRTDVEVLAVRKVLDPSGKIRSFEVDIR*
Ga0070696_1014861791	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MVHQSPVQRTLLLRPEVIGNEEDKGRIEQQVRALTGRVDAEVLAVRKITGPDGRTLSFEVDIR*
Ga0070693_1001277593	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MVHQSPVPMTLLLTPEVVGNEGDKGRIEQHVKALMRRTDVEVLAVRKIPGPDGKTRSFEVDIR*
Ga0070693_1015664481	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	PKSWFSGGERAQSMVHQSPVQRTLLLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGRTLSFEVDIR*
Ga0068855_1023504612	3300005563	Corn Rhizosphere	MVHQSPVQRTLVLRPEVIGNEEDKGRIEQQVRALTGRTDAEVLAVRKITGPDGRTLSFEVDIR*
Ga0070664_1006727031	3300005564	Corn Rhizosphere	PMTLLLKPEVVGYEEDRVRIEQHVKALMRRDDVQVLNIRKIPGPDGKTSSFEVDIR*
Ga0068857_1012100132	3300005577	Corn Rhizosphere	FSGGERAQSMVHQSPVQRTLLLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGTTLSFEVDIR*
Ga0068857_1016178441	3300005577	Corn Rhizosphere	MVHQSPVQRTLVLHPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGKTLSFEVDIR*
Ga0068852_1003203013	3300005616	Corn Rhizosphere	MVHQSPVQRTLLLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGRTLSFEV
Ga0068859_1002206402	3300005617	Switchgrass Rhizosphere	MTLLLQPEVVGIEGDKGRIEQHVKALMRRDDIEVLNIRKIPGPDGKTRSFEVDIR*
Ga0068866_108075392	3300005718	Miscanthus Rhizosphere	QSMVHQSPVQRTLVLRPEVVGNEEDKGRIEQQVKTLTGRTDAEVLAVRKITGPDGKTLSFEVDIR*
Ga0068863_1012533591	3300005841	Switchgrass Rhizosphere	GGERAQSMVHQSPVQMTLLLLPEVIGNEGDRSRIKEHVKALTGRTDVEVLAVRKIPGPDGKTRSFEVDIR*
Ga0068858_1002801302	3300005842	Switchgrass Rhizosphere	MVHPSPVARTLVLTPEVVGREEDKTRIEQRVRELLRRTDIEVLDVRKVAGPDGKTQSFEVDIR*
Ga0068858_1009016532	3300005842	Switchgrass Rhizosphere	MVHQSPVQRTLVLNAEVVGNEEDKGRIEQQVRALTGRTDAEVLAVRKITGPDGKTLSFEVDIR*
Ga0068858_1013250962	3300005842	Switchgrass Rhizosphere	MVHPSPIAKTLVLTPEVVGSEEDKGRIEQQVKTLTGRADVEVIAVRKVLDSAGRTRSFEVDIR*
Ga0068858_1019673432	3300005842	Switchgrass Rhizosphere	GERALSMVHQSPVARTLVLTPEVVGNEEDRSRIEQRVKELLRRTDVEVLNVRKVSGPDGKTQSFEVDIR*
Ga0068862_1002918702	3300005844	Switchgrass Rhizosphere	MTLLLKPEVVGYEEDRVRIEQHVKALMRRDDVEVLNIRKIPGPDGKTSSFEVDIR*
Ga0075293_10493432	3300005875	Rice Paddy Soil	MVHQSPVARTLVLTPEVVGNEEDKRRIEQRVRQLLRRTDVEVLNVRKIPGPDGKTTSFEVDIR*
Ga0075295_10138722	3300005879	Rice Paddy Soil	MVHQSPVARTLVLTPEVVGKEEDKSRIEKRVKELLGRTDVEVLEVRKIPGPDGKTRSFEVDIR*
Ga0075284_10409092	3300005885	Rice Paddy Soil	ERAQDTVHQSPVVRTLVLMPEVVGNEEDKSQIEQRVKQLLRRTDVEVLNVRKVAGPDGKTQSFEVDIR*
Ga0075286_10205902	3300005886	Rice Paddy Soil	MVHQSPVARTLVLTPEVIGNEEDRNRIEQRVKELLRRTDVEVLDVRKVSG
Ga0082029_11512742	3300006169	Termite Nest	MTLLLRPEVVGIEGDKGRIEEHVKALLKRTDVEVLAVRKIPGPDGKTRSFEVDIR*
Ga0079222_103396102	3300006755	Agricultural Soil	MVHPSPVARTLVLIPEVIGNEEDRGRIEQRVRELLRRTDVEVVDVRKIPGPDGKTQRFEVDIR*
Ga0075421_1003166811	3300006845	Populus Rhizosphere	VHPSPVTTTVVLTPEVVGKEGDKGQIEEGVKALTGRTNFEVVEVRKITHPDGRIRSFEVDIR*
Ga0075420_1004124382	3300006853	Populus Rhizosphere	VHQSPVTTTVVLTPEVVGKEGDKGQIEEGVKALTGRTNFEVVEVRKITHPDGRIRSFEVDIR*
Ga0105244_100829653	3300009036	Miscanthus Rhizosphere	FLTPKSWFSGGERAQSMVHQSPVQRTLLLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGRTLSFEVDIR*
Ga0105244_104490461	3300009036	Miscanthus Rhizosphere	MVHPSPVARTLVLTPEVVGREEDKTRIEQRVRELLRRTDIEVLDVRKVAGPDGKTQ
Ga0105250_102610882	3300009092	Switchgrass Rhizosphere	MVHQSPGQRTLLLHAEAVGNEEDRGKIEQQVKALTGRTDVEVLKVRKITGPDGKTLSFEVDIR*
Ga0105240_106348462	3300009093	Corn Rhizosphere	MVHQSPIARTLVLTPEVVGNEEDRSRIEQRVKELLRRPDVEVVEVRKIAGPDGRTRSFEVDIR*
Ga0105240_107717731	3300009093	Corn Rhizosphere	PKSWFSGGERAQSMVHQSPVQRTLLLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGKTLSFEVDIR*
Ga0105245_121901451	3300009098	Miscanthus Rhizosphere	MVHQSPVQRTLVLTPEVVGNEEDKSRIEQRVRELLRRTDVEVLDVRKIAGPDGKTKSFEVDIR*
Ga0105247_118603202	3300009101	Switchgrass Rhizosphere	SMVHQSPVARTLVLTPEVVGNEEDRSRIEQRVKELLRRTDVEVLNVRKVSGPDGKTQSFEVDIR*
Ga0111538_129442861	3300009156	Populus Rhizosphere	AQNMVHQSPVAQTLVLPPEVVGNEEDKGQIEERVKALTGRTNVEVLAVRKITHPDGRARGFEVDIR*
Ga0105237_126262381	3300009545	Corn Rhizosphere	MTLLLQPEVVGIEGDKGRIEQHVRALVGRTDVEVLAVRKIPGPDGKTRSFEVDIR*
Ga0126311_100278703	3300010045	Serpentine Soil	MTLVLKPEVVGNEEDKDRIEQHVKALTGRTEVEVLAIRKIPGPDGRTRSFEVDIR*
Ga0126382_110527851	3300010047	Tropical Forest Soil	TLVLSPEVIGNEEDRGRIEQQVKTLTGRTDTEVLTVRKITGPDGKTLSFEVDIR*
Ga0126320_10454062	3300010146	Soil	VQRTLVLRPEVVGSEEDKGRIEQEVRTLTGRTDVEVLAVRKITGPDGRTLSFEVDIR*
Ga0126372_126833561	3300010360	Tropical Forest Soil	MVHPSPVARTLVLTPEVVGNEEDKSRIEQRVRELLRRTDVEVVEVRKVSGPDGKTQSFEVDIR*
Ga0134128_131665672	3300010373	Terrestrial Soil	FSTGERAQSMVHQSPVQMTLLLLPEVVGNEGDRSRIEEHVKALTGRTDVEVLAVRKIPGPDGKTRSFEVDIR*
Ga0105239_132095051	3300010375	Corn Rhizosphere	RAQTMVHPSPVARTLVLTPEVVGKEEDKSRIEQRVRELLRRTDVEVLNVRKVSGPDGKTQSFEVDIR*
Ga0134126_131012602	3300010396	Terrestrial Soil	VHQSPVQMTLLLLPEVVGNEGDRSRIEEHVKALTGRTDVEVLAVRKIPGPDGKTRSFEVDIR*
Ga0134124_101662091	3300010397	Terrestrial Soil	AQNMVHQSPVAQTLVLPPEVIGNEADKGQIEERVKALTGRTNVEVLAVRKITHPDGRARGFEVDIR*
Ga0134127_101220062	3300010399	Terrestrial Soil	MVHPSPVIRTLTLVLRPEVVGNEGDKGKIEQHVKTLMGRPDIEVLDIRKIPGPDGKTRSFEVDIR*
Ga0134122_104606702	3300010400	Terrestrial Soil	MVHQSPVARTLVLTPEVVGNEEDRSRIEQRVKELLRRTDVEVLDIRKVSGPDGKTRSFEVDIR*
Ga0134122_124936941	3300010400	Terrestrial Soil	SWFSGGERAQSMVHQSPVPMTLLLKPEVVGYEEDRVRIEQHVKALMRRDDVQVLNIRKIPGPDGKTSNFEVDIR*
Ga0134123_107748801	3300010403	Terrestrial Soil	GGERAQSMVHQSPVQRTLVLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGTTLSFEVDIR*
Ga0105246_109568162	3300011119	Miscanthus Rhizosphere	LVLTPEVVGREEDKTRIEQRVRKLLRRTDIEVLDVRKVAGPDGKTQSFEVDIR*
Ga0105246_121517962	3300011119	Miscanthus Rhizosphere	MVHQSPVARTLVLTPEVVGNEEDRSRIEQRVKELLRRTDVEVLDVRKIPGPDGKTRSFEVDIR*
Ga0150985_1130380502	3300012212	Avena Fatua Rhizosphere	VHPSPIASTLVLTPEVVGKEEDKTRIEQRVRELLRRTDIEVLDVRRVAGPDGRTQSFEVDIR*
Ga0150984_1112345291	3300012469	Avena Fatua Rhizosphere	NAVARTLVLTPEVVGKEEDKTRIEQRVRELLRRTDIEVLDVRRVAGPDGRTQSFEVDIR*
Ga0164301_114668311	3300012960	Soil	MVHQSPVARTLLLTPEVVGKEEDKTRIEQRVRELLRRTDIEVLDVRKVAGPDGKTQSFEVDIR*
Ga0164302_104556602	3300012961	Soil	MVHQSPVARTLVLTPEVVGKEEDKTRIEQRVRELLRRTDIEVLNVRKIAGPAGKTQSFEVDIR*
Ga0163162_112513941	3300013306	Switchgrass Rhizosphere	SWFSGGERAQSIVHQSPVQRTLLLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGRTLSFEVDIR*
Ga0163162_117059961	3300013306	Switchgrass Rhizosphere	VHPSPVARTLVLTPEVVGREEDKTRIEQRVRELLRRTDIEVLDVRKVAGPDGKTQSFEVDIR*
Ga0157372_102765033	3300013307	Corn Rhizosphere	MMHQSPIARTLVLTPEVVGNEEDRSRIEQRVKELLRRPDVEVVEVRKIAG
Ga0157372_131551271	3300013307	Corn Rhizosphere	SWFSGGERAQSMVHQSPVQRTLLLRPEVVGNEEDKGRIEQQVRALTGRTDAEVLAVRKITGPDGKTLSFEVDIR*
Ga0157375_107344222	3300013308	Miscanthus Rhizosphere	ERAPAMVHPSPVARTLVLTPEVVGREEDKTRIEQRVRELLRRTDIEVLDVRKVAGPDGKTQSFEVDIR*
Ga0163163_111425012	3300014325	Switchgrass Rhizosphere	MVHQSPVQRTLVLTPEVIGKEEDKSRIEQRVRELLRRTDVEVLDVRKIAGPDGKTQSFEVDIR*
Ga0157380_115884682	3300014326	Switchgrass Rhizosphere	MTLLLTPEVVGNEGDKDRIEEHVRALLRRTDVEVLAVRKIPGPDGKTRSFEVDIR*
Ga0182000_103635931	3300014487	Soil	SPVPMTLVLKPEAVGNEEDKGRIEQHVKALTGRDDVEVLAIRKIPGPDGRTRGFEVDIR*
Ga0173483_108754451	3300015077	Soil	MTLLLKPEVVGYEEDRVRIEQHVKALMRRDDVQVLNIRKIPGPDGKTSSFEVDI
Ga0132257_1023188451	3300015373	Arabidopsis Rhizosphere	QLRELNPIARTLVLTPEVVGNEEDRSRIEQRVKELLRRTDVEVLDVRKIPGPDGKTHSFEVDIR*
Ga0190274_105061392	3300018476	Soil	MVHQSPVQRTLVLSPEVVGNEEDKGRIAQQVRALTGRSDVEVLAVRKIPGPNGKTLGFEVDIR
Ga0206353_112277562	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	RPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGTTLSFEVDIR
Ga0207710_102260802	3300025900	Switchgrass Rhizosphere	FTSGERALSMVHQSPVARTLVLTPEVVGNEEDRSRIEQRVKELLRRTDVEVLNVRKVSGPDGKTQSFEVDIR
Ga0207645_102877101	3300025907	Miscanthus Rhizosphere	VVGYEEDRVRIEQHVKALMRRDDVQVLNIRKIPGPDGKTSSFEVDIR
Ga0207643_101614332	3300025908	Miscanthus Rhizosphere	MVHQSPVPMTLLLKPEVVGYEEDRVRIEQHVKALMRRDDVQVLNIRKIPGPDGKTSSFEVDIR
Ga0207662_102203442	3300025918	Switchgrass Rhizosphere	MVHPSPVARTLVLTPEVIGKEEDKTRIEQRVRELLRRTDIEVLDIRKVAGPDGKTQSFEVDIR
Ga0207652_108707241	3300025921	Corn Rhizosphere	MVHQSPVQRTLLLRLEVVGNEEDKGRIEQEVRALTGRTDAEVLAVRKITGPDGKTLSFEVDIR
Ga0207681_100130125	3300025923	Switchgrass Rhizosphere	MVHQSPVQRTLLLQPEVVGNEEDKGRIEQQVKALTGRTDTEVLAVRKITGPDGRTLSFEVDIR
Ga0207690_108895512	3300025932	Corn Rhizosphere	MVHQSPVQRTLVLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGRTLSFEVDIR
Ga0207690_109002171	3300025932	Corn Rhizosphere	MVHQSPIPITLLLTPEVVGNEGDKDRIEEHVRALLRRTDVEVLAVRKIPGPDGKTRSFEVDIR
Ga0207706_101119853	3300025933	Corn Rhizosphere	LRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGKTLSFEVDIR
Ga0207686_104842551	3300025934	Miscanthus Rhizosphere	MVHQSPVQRTLVLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGKTLSFEVDIR
Ga0207709_101231113	3300025935	Miscanthus Rhizosphere	MVHQSPVQRTLVLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGKT
Ga0207709_105371221	3300025935	Miscanthus Rhizosphere	VLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGRTLSFEVDIR
Ga0207670_101972323	3300025936	Switchgrass Rhizosphere	MVHQSPVQRTLLLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGKTLSFEVDIR
Ga0207704_101207372	3300025938	Miscanthus Rhizosphere	MVHQSPVQRTLLLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGRTLSFEVDIR
Ga0207704_113881771	3300025938	Miscanthus Rhizosphere	VILIFIFLTPKSWFSGGERAQSMVHQSPVPMTLLLKPEVVGYEEDRVRIEQHVKALMRRDDVQVLNIRKIPGPDGKTSSFEVDIR
Ga0207711_102315822	3300025941	Switchgrass Rhizosphere	MVHPSPVARTLVLTPEVVGREEDKTRIEQRVRELLRRTDIEVLDVRKVAGPDGKTQSFEVDIR
Ga0207689_104474832	3300025942	Miscanthus Rhizosphere	LRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGTTLSFEVDIR
Ga0207667_114815231	3300025949	Corn Rhizosphere	VGNEEDKGRIEQQVRALTGRADAEVLAVRKITGPDGRTLSFEVDIR
Ga0207651_101187133	3300025960	Switchgrass Rhizosphere	MVHPSPVARTVVLTPEVVGREEDKTRIEQRVRELLRRTDIEVLDVRKVAGPDGKTQSFEVDIR
Ga0207651_108202442	3300025960	Switchgrass Rhizosphere	LRPEVVGNEEDKGRIEQQVRALTGRTDAEVLAVRKITGPDGRTLSFEVDIR
Ga0207640_101921192	3300025981	Corn Rhizosphere	MVHQSPVPMTLLLTPEVVGNEGDKGRIEQHVKALMRRTDVEVLAVRKIPGPDGKTRSFEVDIR
Ga0207640_111796951	3300025981	Corn Rhizosphere	KSWFSGGERAQSMVHQSPVQRTLVLRPEVVGTEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGKTLSFEVDIR
Ga0207703_100754784	3300026035	Switchgrass Rhizosphere	QSPVQRTLVLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGRTLSFEVDIR
Ga0207703_104221132	3300026035	Switchgrass Rhizosphere	MVHPSPVARTLVLTPEVVGREEDKTRIEQRVRELLRRTDIEVLDVRKVAGPDGKT
Ga0207641_124387612	3300026088	Switchgrass Rhizosphere	QSPVQRTLVLTPEVIGKEEDKSRIEQRVRELLRRTDVEVLDVRKIAGPDGKTQSFEVDIR
Ga0207676_100559351	3300026095	Switchgrass Rhizosphere	VPVTLLLTPEVVGNEGDKSKIEQHVKALMGRTDVEVLAVRKIPGPDGKTRRFEVDIR
Ga0207676_103358492	3300026095	Switchgrass Rhizosphere	MTLLLKPEVVGYEEDRVRIEQHVKALMRRDDVQVLNIRKIPGPDGKTSSFEVDIR
Ga0207674_101620342	3300026116	Corn Rhizosphere	VVILIFIFLTPKSWFSGGERVQSMVHQSPVPMTLLLQPEVVGIEGDKGRIEQHVKALMRRDDIEVLNIRKIPGPDGKTRSFEVDIR
Ga0207674_115540552	3300026116	Corn Rhizosphere	MTLLLTPEVVGIEGDKGRIEQHVRALVGRTDVEVLAVRKIPGPDGRTRSFEVDIR
Ga0207698_116074861	3300026142	Corn Rhizosphere	MVHQSPVQRTLLLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGKTLSFEVDI
Ga0209796_102738681	3300027766	Agave	QSPVARTLVLLPEIIGKEEDKSQIEQRVRQLLRRTDIEVVDVRKVPGPDGKTHSFEVDIR
Ga0209177_101882882	3300027775	Agricultural Soil	MVHPSPVARTLVLIPEVIGNEEDRGRIEQRVRELLRRTDVEVVDVRKIAGPDGKTQRFEVDIR
Ga0209074_100695382	3300027787	Agricultural Soil	MVHPSPVARTLVLIPEVIGNEEDRGRIEQRVRELLRRTDVEVVDVRKIPGPDGKTQRFEVDIR
Ga0268264_110394721	3300028381	Switchgrass Rhizosphere	HQSPVQRTLVLRPEVVGNEEDKGRIEQQVKTLTGRTDAEVLAVRKITGPDGKTLSFEVDI
Ga0310887_109674392	3300031547	Soil	NWWFSSGEPAQRTLHPSPVPITVVVSLEVVGNEEDKSQIEQRVKALTGRTDVEVLAVRKVPDPSGKTRSFEVDIR
Ga0310886_109565352	3300031562	Soil	KSWFSGGERAQSMVHQSPVQRTLLLRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGRTLSFEVDIR
Ga0310890_115042921	3300032075	Soil	GGERVQSMVHQSPVPMTLFLKPEVIGNEGDKGKIEQHVKALMGRDDVEVLNIRKIPGPDGKTRGFEVDIR
Ga0310812_103531742	3300032421	Soil	KDWFSTGERAQNPVHPNPIAKTLVLSPEVIGSEEDRTRIEQQIKVLTGRTDVEVLAVRKVLDPEGKTRSFEVDIR
Ga0310810_109359982	3300033412	Soil	MVHQSPVQRTLILRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGRTLSFEVDIR
Ga0314792_108427_543_698	3300034667	Soil	LRPEVVGNEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGRTLSFEVDIR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052856

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences