Metagenome / Metatranscriptome Family F052725

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F052725
Family Type	Metagenome / Metatranscriptome
Number of Sequences	142
Average Sequence Length	52 residues
Representative Sequence	MERYTHQQNLAHYRRLLAESERDPARNEVQHNWLLKLLADEEAEDAKPQDRRH
Number of Associated Samples	104
Number of Associated Scaffolds	142

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.11 %
% of genes near scaffold ends (potentially truncated)	21.13 %
% of genes from short scaffolds (< 2000 bps)	80.99 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (64.789 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.310 % of family members)
Environment Ontology (ENVO)	Unclassified (31.690 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.366 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.38% β-sheet: 0.00% Coil/Unstructured: 50.62%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.64
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.64
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 142 Family Scaffolds
PF03734	YkuD	4.23
PF00072	Response_reg	2.11
PF00106	adh_short	1.41
PF13411	MerR_1	0.70
PF12833	HTH_18	0.70
PF10074	DUF2285	0.70
PF00771	FHIPEP	0.70
PF13844	Glyco_transf_41	0.70
PF12840	HTH_20	0.70
PF02915	Rubrerythrin	0.70
PF00248	Aldo_ket_red	0.70
PF00144	Beta-lactamase	0.70
PF00563	EAL	0.70
PF06271	RDD	0.70
PF07238	PilZ	0.70
PF02698	DUF218	0.70
PF00027	cNMP_binding	0.70
PF02771	Acyl-CoA_dh_N	0.70
PF13545	HTH_Crp_2	0.70
PF01042	Ribonuc_L-PSP	0.70
PF00440	TetR_N	0.70
PF12071	DUF3551	0.70
PF04392	ABC_sub_bind	0.70
PF02245	Pur_DNA_glyco	0.70
PF08712	Nfu_N	0.70
PF00364	Biotin_lipoyl	0.70
PF00497	SBP_bac_3	0.70

COG ID	Name	Functional Category	% Frequency in 142 Family Scaffolds
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	4.23
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	4.23
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.70
COG1434	Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family	Cell wall/membrane/envelope biogenesis [M]	0.70
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.70
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.70
COG1714	Uncharacterized membrane protein YckC, RDD family	Function unknown [S]	0.70
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.70
COG2094	3-methyladenine DNA glycosylase Mpg	Replication, recombination and repair [L]	0.70
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.70
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.70
COG2949	Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin	Cell wall/membrane/envelope biogenesis [M]	0.70
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.70
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.70
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.70
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.79 %
Unclassified	root	N/A	35.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.79 %
Unclassified	root	N/A	35.21 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.79 %
Unclassified	root	N/A	35.21 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	57.75 %
Unclassified	root	N/A	35.21 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	56.34 %
Unclassified	root	N/A	35.21 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	52.82 %
Unclassified	root	N/A	35.21 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.41 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	52.82 %
Unclassified	root	N/A	35.21 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.41 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	42.96 %
Unclassified	root	N/A	35.21 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	1.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.41 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.21 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	14.79 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.41 %
Nitrobacter hamburgensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis	1.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.41 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.21 %
Bradyrhizobium sp. YR681	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	8.45 %
Bradyrhizobium sp. 150	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 150	2.82 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2.11 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.41 %
Nitrobacter hamburgensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis	1.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.41 %
Bradyrhizobium sp. 191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 191	0.70 %
Bradyrhizobium sp. th.b2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	0.70 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.70 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908029\|A2_v1_NODE_12361_len_6443_cov_9_851312	Not Available	6493	Open in IMG/M
2124908029\|A2_v1_NODE_3486_len_986_cov_7_459432	Not Available	1036	Open in IMG/M
2124908029\|A2_v1_NODE_40911_len_726_cov_5_539945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	776	Open in IMG/M
2124908029\|A2_v1_NODE_43375_len_1911_cov_8_020409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	1961	Open in IMG/M
2124908044\|A5_c1_ConsensusfromContig72481	Not Available	623	Open in IMG/M
3300001081\|JGI12662J13196_1015117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	636	Open in IMG/M
3300001471\|JGI12712J15308_10173231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	562	Open in IMG/M
3300001545\|JGI12630J15595_10014139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1713	Open in IMG/M
3300001593\|JGI12635J15846_10708445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	580	Open in IMG/M
3300002245\|JGIcombinedJ26739_100250954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1657	Open in IMG/M
3300002245\|JGIcombinedJ26739_100991226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	725	Open in IMG/M
3300005602\|Ga0070762_10888317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis	607	Open in IMG/M
3300005610\|Ga0070763_10913504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis	523	Open in IMG/M
3300005944\|Ga0066788_10025579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1325	Open in IMG/M
3300005944\|Ga0066788_10112550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	679	Open in IMG/M
3300005950\|Ga0066787_10000640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4527	Open in IMG/M
3300005950\|Ga0066787_10007190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1715	Open in IMG/M
3300005950\|Ga0066787_10019748	Not Available	1149	Open in IMG/M
3300005952\|Ga0080026_10030378	All Organisms → cellular organisms → Bacteria	1357	Open in IMG/M
3300005952\|Ga0080026_10033262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1305	Open in IMG/M
3300005993\|Ga0080027_10148039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	900	Open in IMG/M
3300005994\|Ga0066789_10052807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1778	Open in IMG/M
3300005994\|Ga0066789_10112634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1165	Open in IMG/M
3300005994\|Ga0066789_10230425	Not Available	778	Open in IMG/M
3300005994\|Ga0066789_10255081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	735	Open in IMG/M
3300005994\|Ga0066789_10448683	Not Available	539	Open in IMG/M
3300005995\|Ga0066790_10311518	Not Available	672	Open in IMG/M
3300006047\|Ga0075024_100276692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	815	Open in IMG/M
3300006047\|Ga0075024_100322547	Not Available	764	Open in IMG/M
3300006050\|Ga0075028_100040584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2190	Open in IMG/M
3300006050\|Ga0075028_100253691	Not Available	967	Open in IMG/M
3300006050\|Ga0075028_100292356	Not Available	906	Open in IMG/M
3300006050\|Ga0075028_101038126	Not Available	511	Open in IMG/M
3300006176\|Ga0070765_100357674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1358	Open in IMG/M
3300006354\|Ga0075021_10422724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	838	Open in IMG/M
3300006950\|Ga0075524_10099974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1238	Open in IMG/M
3300007255\|Ga0099791_10487968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	598	Open in IMG/M
3300009090\|Ga0099827_10100445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2299	Open in IMG/M
3300009650\|Ga0105857_1192675	Not Available	588	Open in IMG/M
3300009651\|Ga0105859_1052331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	1043	Open in IMG/M
3300010861\|Ga0126349_1257209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	500	Open in IMG/M
3300011269\|Ga0137392_10943729	Not Available	709	Open in IMG/M
3300011269\|Ga0137392_11549710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	521	Open in IMG/M
3300011270\|Ga0137391_11125389	Not Available	633	Open in IMG/M
3300011270\|Ga0137391_11430893	Not Available	537	Open in IMG/M
3300011431\|Ga0137438_1034981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	1473	Open in IMG/M
3300011444\|Ga0137463_1235115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	684	Open in IMG/M
3300012096\|Ga0137389_10047604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3222	Open in IMG/M
3300012189\|Ga0137388_11044648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 150	753	Open in IMG/M
3300012203\|Ga0137399_10460257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 150	1064	Open in IMG/M
3300012685\|Ga0137397_10112192	All Organisms → cellular organisms → Bacteria	2005	Open in IMG/M
3300012685\|Ga0137397_10143377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1768	Open in IMG/M
3300012685\|Ga0137397_10262453	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1287	Open in IMG/M
3300012922\|Ga0137394_10144619	All Organisms → cellular organisms → Bacteria	2021	Open in IMG/M
3300012924\|Ga0137413_11785335	Not Available	507	Open in IMG/M
3300012929\|Ga0137404_10007692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7348	Open in IMG/M
3300012944\|Ga0137410_10451331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 150	1044	Open in IMG/M
3300014490\|Ga0182010_10026160	All Organisms → cellular organisms → Bacteria → Proteobacteria	2684	Open in IMG/M
3300014492\|Ga0182013_10428190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	704	Open in IMG/M
3300014657\|Ga0181522_10221731	Not Available	1115	Open in IMG/M
3300014838\|Ga0182030_10001493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	48266	Open in IMG/M
3300015052\|Ga0137411_1357842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1328	Open in IMG/M
3300015080\|Ga0167639_1021383	Not Available	908	Open in IMG/M
3300015089\|Ga0167643_1004949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1821	Open in IMG/M
3300015197\|Ga0167638_1100472	Not Available	553	Open in IMG/M
3300015206\|Ga0167644_1000305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	51895	Open in IMG/M
3300015206\|Ga0167644_1118033	Not Available	746	Open in IMG/M
3300018000\|Ga0184604_10013047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1812	Open in IMG/M
3300018027\|Ga0184605_10219792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	863	Open in IMG/M
3300018027\|Ga0184605_10371797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	644	Open in IMG/M
3300018028\|Ga0184608_10285210	Not Available	726	Open in IMG/M
3300018028\|Ga0184608_10345405	Not Available	654	Open in IMG/M
3300018051\|Ga0184620_10059760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1096	Open in IMG/M
3300018052\|Ga0184638_1090305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	1123	Open in IMG/M
3300018052\|Ga0184638_1218026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	667	Open in IMG/M
3300018054\|Ga0184621_10014035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2366	Open in IMG/M
3300018054\|Ga0184621_10345771	Not Available	523	Open in IMG/M
3300018056\|Ga0184623_10124690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	1191	Open in IMG/M
3300018061\|Ga0184619_10058136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	1692	Open in IMG/M
3300018066\|Ga0184617_1124305	Not Available	740	Open in IMG/M
3300018071\|Ga0184618_10352633	Not Available	627	Open in IMG/M
3300019787\|Ga0182031_1482096	Not Available	1877	Open in IMG/M
3300019867\|Ga0193704_1076986	Not Available	618	Open in IMG/M
3300019879\|Ga0193723_1074171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 150	980	Open in IMG/M
3300019881\|Ga0193707_1148396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	657	Open in IMG/M
3300019882\|Ga0193713_1188236	Not Available	533	Open in IMG/M
3300019883\|Ga0193725_1004502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4033	Open in IMG/M
3300019886\|Ga0193727_1040507	All Organisms → cellular organisms → Bacteria	1548	Open in IMG/M
3300019886\|Ga0193727_1082758	Not Available	972	Open in IMG/M
3300019887\|Ga0193729_1005141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6267	Open in IMG/M
3300019887\|Ga0193729_1005332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6152	Open in IMG/M
3300019890\|Ga0193728_1003291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8229	Open in IMG/M
3300019890\|Ga0193728_1062789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1782	Open in IMG/M
3300020002\|Ga0193730_1066614	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300020004\|Ga0193755_1131641	Not Available	773	Open in IMG/M
3300020022\|Ga0193733_1163432	Not Available	594	Open in IMG/M
3300020062\|Ga0193724_1066421	Not Available	756	Open in IMG/M
3300020062\|Ga0193724_1122408	Not Available	513	Open in IMG/M
3300021363\|Ga0193699_10002894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6440	Open in IMG/M
3300021363\|Ga0193699_10027925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2098	Open in IMG/M
3300021363\|Ga0193699_10034413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1910	Open in IMG/M
3300021363\|Ga0193699_10442337	Not Available	536	Open in IMG/M
3300021404\|Ga0210389_10617569	Not Available	851	Open in IMG/M
3300021405\|Ga0210387_10081834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2666	Open in IMG/M
3300021475\|Ga0210392_10752342	Not Available	727	Open in IMG/M
3300025474\|Ga0208479_1103759	Not Available	515	Open in IMG/M
3300025495\|Ga0207932_1006561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3697	Open in IMG/M
3300026214\|Ga0209838_1004745	All Organisms → cellular organisms → Bacteria	1910	Open in IMG/M
3300026217\|Ga0209871_1032247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	982	Open in IMG/M
3300026281\|Ga0209863_10005527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4239	Open in IMG/M
3300026291\|Ga0209890_10018250	All Organisms → cellular organisms → Bacteria	2756	Open in IMG/M
3300026291\|Ga0209890_10099046	Not Available	1013	Open in IMG/M
3300026356\|Ga0257150_1019050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	958	Open in IMG/M
3300026498\|Ga0257156_1103884	All Organisms → cellular organisms → Bacteria → Proteobacteria	591	Open in IMG/M
3300027521\|Ga0209524_1075121	Not Available	710	Open in IMG/M
3300027583\|Ga0209527_1072129	Not Available	776	Open in IMG/M
3300027583\|Ga0209527_1149097	Not Available	518	Open in IMG/M
3300027603\|Ga0209331_1011786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2285	Open in IMG/M
3300027610\|Ga0209528_1099020	Not Available	644	Open in IMG/M
3300027645\|Ga0209117_1033668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 191	1586	Open in IMG/M
3300027648\|Ga0209420_1189367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	550	Open in IMG/M
3300027678\|Ga0209011_1111738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	788	Open in IMG/M
3300027684\|Ga0209626_1041679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1140	Open in IMG/M
3300027882\|Ga0209590_10482957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	800	Open in IMG/M
3300027894\|Ga0209068_10014421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3793	Open in IMG/M
3300027894\|Ga0209068_10476138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	718	Open in IMG/M
3300027908\|Ga0209006_11538340	Not Available	502	Open in IMG/M
3300027910\|Ga0209583_10161551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	925	Open in IMG/M
3300027915\|Ga0209069_10038083	All Organisms → cellular organisms → Bacteria	2253	Open in IMG/M
3300027915\|Ga0209069_10468226	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300028047\|Ga0209526_10093354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2118	Open in IMG/M
3300028047\|Ga0209526_10331229	Not Available	1024	Open in IMG/M
3300028047\|Ga0209526_10377448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	945	Open in IMG/M
3300028881\|Ga0307277_10426538	Not Available	594	Open in IMG/M
3300031058\|Ga0308189_10268533	Not Available	652	Open in IMG/M
3300031093\|Ga0308197_10204729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	673	Open in IMG/M
3300031094\|Ga0308199_1076806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	700	Open in IMG/M
3300031250\|Ga0265331_10437889	Not Available	587	Open in IMG/M
3300031524\|Ga0302320_10781485	Not Available	1062	Open in IMG/M
3300031708\|Ga0310686_111681091	Not Available	541	Open in IMG/M
3300034129\|Ga0370493_0360861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	506	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.30%
Host-Associated	Host-Associated	0.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.87%
Aquatic	Environmental → Aquatic	20.42%
Plants	Host-Associated → Plants	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.17%
Sediment	Environmental → Aquatic → Sediment	19.72%
Freshwater	Environmental → Aquatic → Freshwater	0.70%
Peat	Environmental → Terrestrial → Peat	0.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.37%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	19.72%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	18.31%
Loam	Environmental → Terrestrial → Soil → Loam	15.49%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	19.72%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	17.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.49%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.52%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	13.38%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.68%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	9.86%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	9.86%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	8.45%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	3.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	3.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.52%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	3.52%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.11%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.11%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.11%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.41%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.41%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.70%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.70%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.70%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.70%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.70%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908029	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2	Environmental	Open in IMG/M
2124908044	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5	Environmental	Open in IMG/M
3300001081	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009650	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061	Environmental	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300010861	Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011431	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015080	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6C, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300015089	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8A, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015197	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025495	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300026214	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047 (SPAdes)	Environmental	Open in IMG/M
3300026217	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)	Environmental	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300034129	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_16	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A2_v1_00009570	2124908029	Soil	MERHNHEQNLAHCRRLVAESKRDPLRNEAQLDWLLKLLADEEAEDSKSLDGTH
A2_v1_00034580	2124908029	Soil	MERRIHEQNLAHYRRLVVESERDPARNEVQHNWLLKLLADAEVEDAKPLGRRH
A2_v1_00302400	2124908029	Soil	MDRYIHDQNLAHYRRLVAESERDPSRNQVQHNWLLKLLADEEAEDARPRDRRH
A2_v1_00071520	2124908029	Soil	MERHIHEQNLAHYRRLVVESERDPARNEVQHNWLLKWLADAEAEDAKPLGRRH
A5_c1_00800940	2124908044	Soil	MERHIHEQNLAHYRRLVVESERDPARNEVQHNWLLKLLADAEVEDAKPLGRRH
JGI12662J13196_10151172	3300001081	Forest Soil	MERFIHYENLAHYRRLIAASERDPARNEVQHNWLLKLLADEEAKDVYPPR*
JGI12712J15308_101732311	3300001471	Forest Soil	MESFIHRQKLVTYRRLIAESERDPARDQVQHNWLLKLLADEEA
JGI12630J15595_100141394	3300001545	Forest Soil	MERHNHEQNLAHCRRLLAESKRDPLRNEVQLDWLLKLLADEETEDSKSLDGTH*
JGI12635J15846_107084451	3300001593	Forest Soil	MYPLEVTMELFIHEQNIAHYRRLVIESERDPARNEVQHNWLLKLLADAEAENIKPLDRRH
JGIcombinedJ26739_1002509541	3300002245	Forest Soil	MERHNHEQNLAHCRRLVAESKRDPLRNEAQLDWLLKLLADEEAEDSKSPDGTH*
JGIcombinedJ26739_1009912261	3300002245	Forest Soil	MERFIHHQNLASYRRLIAASERDPARNEIQHKWLLKLLADEEATDGKPLDSHH*
Ga0070762_108883172	3300005602	Soil	VTMESFIHRQKLVTYRRLIAESERDPARDQVQHNWLLKLLADEEAMDAKPL*
Ga0070763_109135041	3300005610	Soil	MESFIHRQKLVNYRRLIAESERDPARNEVQHNWLLKLLADEEALDANPL*
Ga0066788_100255792	3300005944	Soil	MERYIRDQNLAHYRRLVAESERDPARNQVQHNWLLKLLADEEAEDAKPQDRRH*
Ga0066788_101125502	3300005944	Soil	MERHIHEQNLAHYRRLVVESERDPARNEVQHNWLLKLLADAEVEDAKPLGRRH*
Ga0066787_100006405	3300005950	Soil	MERYIHDQNLAHYRRLVAESERDPLRNQVQHDWLLKLLADEEAESAKPQDRRH*
Ga0066787_100071901	3300005950	Soil	MERHIHEWNLAHYRRLVVESERDPARNEVQHNWLLKLLADAEVEDAKPLGRRH*
Ga0066787_100197482	3300005950	Soil	MERHNHEQNLAHCRRLVAESKRDPLRNEAQLDWLLKLLADEEAEDSKSLDGTH*
Ga0080026_100303783	3300005952	Permafrost Soil	MERHNHEQNLAHCRRLVADSKRDPLRNEAQLDWLLKLLADEEAEDSK
Ga0080026_100332622	3300005952	Permafrost Soil	MERHIHEQNLAHYRRLVVESERDPARNEVQHNWLLKLLADAEAEDAKPLDRRH*
Ga0080027_101480391	3300005993	Prmafrost Soil	MERHIHERNLAHYRRLVVESERDPARNEVQHNWLLKLLADAEAEDAKPLGRRH*
Ga0066789_100528072	3300005994	Soil	VTMERHIHEQNLAHYRRLVVESERDPARNEVQHNWLLKLLADAEAEQAKPLGRRH*
Ga0066789_101126342	3300005994	Soil	MERHIHEQNLAHYRRLVVESERDPARNEVQHNWLLKLLADAEAEDAKPL
Ga0066789_102304253	3300005994	Soil	VTMERHIHEQNLAHYRRLVVESERDPARNEVQHNWLLKLLADAEAEDAKPLGRRH*
Ga0066789_102550811	3300005994	Soil	MERHIHEWNLAHYRRLVVESERDPARNEVQHNWLLKLLADAEVEDAK
Ga0066789_104486832	3300005994	Soil	MEIYIHEQNLAHYRRLVAESTLDPARNEIQHRWLLKLLADEIANGAKSSGLRH*
Ga0066790_103115181	3300005995	Soil	MERHIHEQNLAHYRRLVVESERDPARNEVQHNWLLKWLADAEAEDAKPLGRRH*
Ga0075024_1002766923	3300006047	Watersheds	MERYIHDQNLAHYRRLVAESERDPSRNQVQHNWLLKLLADEEAESAKPQDRRH*
Ga0075024_1003225473	3300006047	Watersheds	YTHQQNLAHYRRLLAESERDPARNEVQHNWLLKLLADEEAEDAKPQDRRH*
Ga0075028_1000405841	3300006050	Watersheds	MERYTHRQNLAHYRRLLAESERDPARNQVQHNWLLKLLADEEAEDAKPQDRRH*
Ga0075028_1002536912	3300006050	Watersheds	MERYTHQQNLAHYRRLLAESERDPARNEVQHNWLLKLLADEEAEDAKPQDRRH*
Ga0075028_1002923561	3300006050	Watersheds	MERHNHEQNLAHCRRLVAEAKLDPLRNEAQLDWLLKLLADEQAEDSKSLDGTH*
Ga0075028_1010381261	3300006050	Watersheds	MERYIHDQNLAHYRRLVAESERDPSRNQVQHNWLLKLLADE
Ga0070765_1003576743	3300006176	Soil	MESFIHRQKLVTYRRLIAESERDPARDQVQHNWLLKLLADEEAMDAKPL*
Ga0075021_104227241	3300006354	Watersheds	YTHQQNLAHYRRLLAESERDPVRNEVQHNWLLKLLADEEAEDAKPQDRRH*
Ga0075524_100999742	3300006950	Arctic Peat Soil	MERFIHDRNLAHYRRLIAASERDPARDEVQHNWLLKLLADEEANDLHPSH*
Ga0099791_104879681	3300007255	Vadose Zone Soil	MERYTHQQNLAHYRRLLAESDRNPERNEVQHNWLLNLLADEEAEDAKPQDRRH*
Ga0099827_101004451	3300009090	Vadose Zone Soil	MERHIHEQNLAHYRRLLAESDRNLERNEVQHNWLLKLLTDEEAEDAKPRYRRH*
Ga0105857_11926751	3300009650	Permafrost Soil	MERHNHEQNLAHCRRLVAESKRDPLRNEAQLDWLLKLLADEEIKDKRAR*
Ga0105859_10523312	3300009651	Permafrost Soil	MERHIHEQNLAHYRRLVVESERDPARNEVQHNWLLKLLADAEAEQAKPLGRRH*
Ga0126349_12572091	3300010861	Boreal Forest Soil	MERFIHNENLAHYRRLIAASERDPARDVVQHKWLLKLLADEEARDVYPPH*
Ga0137392_109437292	3300011269	Vadose Zone Soil	MERYIHDQNLAHYRRLVAESERDPSRNQVRHNWLLKLLADEEAEHARPHDRRH*
Ga0137392_115497101	3300011269	Vadose Zone Soil	MERYTHQQNLARYRRLLAESEGDPARNEVQHNWLLKLLADEEAEDAKPQD*
Ga0137391_111253892	3300011270	Vadose Zone Soil	MERYIHDQNLAHYRRLVAESERDPSRNQVQHDWLLKLLADEEAEHARPQDRRH*
Ga0137391_114308932	3300011270	Vadose Zone Soil	MERYTHQQNLARYRRLLAESEGDPARNEVQHNWLLKLLADEEAEDAKPQEAP*
Ga0137438_10349812	3300011431	Soil	MERYTHQQNLAHYRRLLAESERDPVRNEVQHNWLLKLLADEEAEDAKPQDRRH*
Ga0137463_12351152	3300011444	Soil	MERHIHEQNLARYRRLLAESDRNPERNEVQHNWLLKLLIDEEAEDAKPRYRRH*
Ga0137389_100476044	3300012096	Vadose Zone Soil	MERYTHQQNLAHYRRLLAESERDPARNQVQHNWLLKLLADEEAEDAKPQDRRH*
Ga0137388_110446481	3300012189	Vadose Zone Soil	TMERYTHQQNLARYRRLLAESEGDPARNEVQHNWLLKLLADEEAEDAKPQEAP*
Ga0137399_104602572	3300012203	Vadose Zone Soil	MERYTHQQNLAHYRRLLAESDRNPERNEVQHNWLLKLLADEEAEDAKPQDRRH*
Ga0137397_101121923	3300012685	Vadose Zone Soil	YTHQQNLAHYRRLLAESERDPARNQVQHNWLLKLLADEEAEDAKPQDRRH*
Ga0137397_101433771	3300012685	Vadose Zone Soil	MERYTHQQNLAHYRRLLAESERDPARNEVQHNWLLKLLADEEAEDVKPQDRRH*
Ga0137397_102624532	3300012685	Vadose Zone Soil	MERHIHEQNLAHYRRLLAESDRNPERNEVQHNWLLKLLTDEEAEDAKPRYRRH*
Ga0137394_101446193	3300012922	Vadose Zone Soil	EVTMERYTHQQNLAHYRRLLAESDRNPERNEIQHNWLLKLLADEEAEDVKPQDRRH*
Ga0137413_117853352	3300012924	Vadose Zone Soil	MERYTHQQNLAHYRRLLAESERDPARNEVQHNWLLKLLADEEAEDAKPQDLRH*
Ga0137404_1000769211	3300012929	Vadose Zone Soil	MERYAHQQNLAHYRRLLAESERDPARNEVQHNWLLKLLADEEAEDAKPQDRRH*
Ga0137410_104513313	3300012944	Vadose Zone Soil	MERYTHQQNLAHYRRLLAESDRNPERNEVQHNWLLKLLADEEAEDVKPQDRRH*
Ga0182010_100261603	3300014490	Fen	VEIFIHEQNIAHYRRLIAESERDPARNEVQHNWLLKLLADAEAENIKPLHQRH*
Ga0182013_104281901	3300014492	Bog	MERYIHKQNLAHYRRLLAESERDPARNEIQHKWLLKLLADEEAEDAKPLESR
Ga0181522_102217311	3300014657	Bog	MEHFIHQQKLVSYRRLIAESERDPARNEVQHNWLLKLLADEEAMDVRPSW*
Ga0182030_1000149312	3300014838	Bog	MERYIHKQNLAHYRRLLAESERDPARNEIQHKWLLKLLADEEAEDAKPLESRR*
Ga0137411_13578424	3300015052	Vadose Zone Soil	MERHIHEQNLAHYRRLLAESDRNPERNEVEHNWLLKTDEEAEDAKPRYRRH*
Ga0167639_10213831	3300015080	Glacier Forefield Soil	MERHNHEQNLAHCRRLVAESKRDPLRNEAQLDWLLKLLADEEAEDSKPLDGRH*
Ga0167643_10049492	3300015089	Glacier Forefield Soil	MEHFIHNQNLARYRRLVAASERDPARDEVQHKWLLKLLADEEATE*
Ga0167638_11004721	3300015197	Glacier Forefield Soil	MERHNHEQNLAHCRRLVAESKRDPLRNEAQLDCLLKLLADEEAEDSKSLDGTH*
Ga0167644_100030552	3300015206	Glacier Forefield Soil	MESFIHRQKLVNYRRLVDESERDPARNEVQHNWLLKLLADEEALDTKPL*
Ga0167644_11180331	3300015206	Glacier Forefield Soil	MERYIHRQNLAHYRRLLAESERDPARNEIQHNWLLKLLADEEAEDAKPLES
Ga0184604_100130472	3300018000	Groundwater Sediment	MERYTHQQNLMHYRRLLAESERDPARNEVQHNWLLKLLADEEAEDAKPQDRRH
Ga0184605_102197921	3300018027	Groundwater Sediment	MERHTHQQNLARYRRLSAESEGDPARNEVQHNWLLKLLADEEAEDAKPQDRRH
Ga0184605_103717971	3300018027	Groundwater Sediment	RHIHEQNLAHYRRLLAESDRNPERNEVQHNWLLKLLTDEEAEDAKPRYRRH
Ga0184608_102852102	3300018028	Groundwater Sediment	MERYNHQQNLARYRRLLAESEGDPARNEVQHNWLLKLLADEEAEDAKPRDRRH
Ga0184608_103454051	3300018028	Groundwater Sediment	MERHIHEQNLAHYRRLLAESDRNPDRNEVQHNWLLKLLTDEEAENAKPRYRRH
Ga0184620_100597601	3300018051	Groundwater Sediment	MERYNHQQNLARYRRLLAESEGDPARNEVQHNWLLKLLADEEAEDAKPQDRRH
Ga0184638_10903052	3300018052	Groundwater Sediment	MERYTHQQNLARYRRLLAEAERDPARNEIQHKWLLKLLADEEAEDARPLDRRH
Ga0184638_12180261	3300018052	Groundwater Sediment	MERYTHQQNLAHYRRLLAESDRNPERNEVQHNWLLKLLADEEAEDAKPQDRRH
Ga0184621_100140351	3300018054	Groundwater Sediment	MERYTHQQNLAHYRRLLAESERNPARNEVQHNWLLKLLADEEAEDAKPQDRRH
Ga0184621_103457711	3300018054	Groundwater Sediment	MERHIHEQNLAHYRRLLAESDRNPERNEVQHNWLLKLLTDEEAEDAKPRYRRH
Ga0184623_101246902	3300018056	Groundwater Sediment	MERYTHQQNLAHYRRLLAESERDPARNEVQHNWLLKLLADEEAEDAKPQDRRH
Ga0184619_100581363	3300018061	Groundwater Sediment	IHMQNLAHYRRLLAESDRNPERNEVQHNWLLKLLTDEEAEDAKPRYRRH
Ga0184617_11243052	3300018066	Groundwater Sediment	MEHHIHKKNLAHYRRLLAESDRNPERNEVQHNWLRKLLTDEEAEDAMPRYGRH
Ga0184618_103526331	3300018071	Groundwater Sediment	MEHHIHKQNLAHYRRLLAESDRNPERNEVQHNWLLKLLTDEEAEDAKPRYRRH
Ga0182031_14820965	3300019787	Bog	MERYIHKQNLAHYRRLLAESERDPARNEIQHKWLLKLLADEEAEDAKPLESRR
Ga0193704_10769862	3300019867	Soil	LLAHVPLEVTMERYTHQQNLAHYRRLLAESERDPARNEVQHNWLLKLLADEEAEDAKPQDRRH
Ga0193723_10741711	3300019879	Soil	MERYTHQQNLAHYRRLLAESERDPARNQVQHNWLLKLLADEEAEDAKPQDRRH
Ga0193707_11483962	3300019881	Soil	MERYTHQQNLAHYRRLLAESERDPARNEVQHNWLLKLLADEEAEDAKPQDRQH
Ga0193713_11882361	3300019882	Soil	MEHHIHKKNLAHYRRLLAESDRNPERNEVQHNWLRKLLTDEEAEDAKPRYRRH
Ga0193725_10045028	3300019883	Soil	MERYTHQQNLARYRRLLAELEGDPARNEVQHNWLLKLLADEEAEDAKPQDRRH
Ga0193727_10405071	3300019886	Soil	VTMERYAHQQNLAHYRRLLAESERDPARNEVQHNWLLKLLADEEAEDAKPQDRRH
Ga0193727_10827582	3300019886	Soil	MEHHIHKQNLAHYRRLLAESDRNPERNEVQHNWLLKLLIDEEAEDAKPRYRRH
Ga0193729_10051419	3300019887	Soil	MERHNHEQNLAHYRRLVAESKRDPLRNEAQLDWLLKLLADDEAEDSKPLDRRH
Ga0193729_100533212	3300019887	Soil	MERYIHDQNLAHYRRLVAESERDPSRNQVQHDWLLKLLADEEAEHARPQDRRH
Ga0193751_10253143	3300019888	Soil	PLEVTMEHFIHNENLAHYRRLIAASEHDPARDEVQHNWLLKLLADEEAKKVYPTR
Ga0193728_10032914	3300019890	Soil	MERHNHEQNLAHCRRLVAESKRDPLRNEAQLDWLLKLLADDEAEDSKPLDRRH
Ga0193728_10627894	3300019890	Soil	MERYIHDQNLAHYRRLVAESERDPLRNQVQHDWLLKLLADEEAESAKPQDRRH
Ga0193730_10666142	3300020002	Soil	MEHHIHMQNLAHYRRLLAESDRNPERNEVQHNWLLKLLTDEEAEDAKPRYRRH
Ga0193755_11316411	3300020004	Soil	MERHIHEQNLAHYRRLLAESDRNPERNEVEHNWLLKLLTDEEAEDAKPRYRRH
Ga0193733_11634322	3300020022	Soil	MERHIHEQNLAHYRRLLAESDRNPDRNEVQHNWLLKLLTDEEAEDAKPRYRRH
Ga0193724_10664212	3300020062	Soil	MERYNHQQNLARYRRLLAESEGDPARNEVQHNWLLKLLADEEAEDARPQDRRH
Ga0193724_11224082	3300020062	Soil	PLEVTMERQIHEQNLAHYRRLIAESDRNPERNEVQHNWLSTLLADEEAEDAKPRYRRH
Ga0193699_100028945	3300021363	Soil	MELYVHVQNLAHYRRLVAESERDPARNEVQHNWLLKLLAHEEAKDTMPLDRRH
Ga0193699_100279252	3300021363	Soil	MERHIHEQNLAHYRRLLAESDRNPERNEVQHNWLLKLLTDEEAENAKPRYRRH
Ga0193699_100344133	3300021363	Soil	VERFIRNENLAHYRRLIAASERDPARDEVQHNWLLKLLAAEEAADVYPSR
Ga0193699_104423371	3300021363	Soil	ENLAHYRRLIAASERDPARDEVQHNWLLKLLAAEEATDVYPSR
Ga0210389_106175692	3300021404	Soil	MESFIHRQKLASYRRLIAESERDPVRNQVQHDWLLKLLADEEALDARPP
Ga0210387_100818346	3300021405	Soil	MESFIHRQKLVNYRRLIAESERDPARNQVQHDWLLKLLADEEALDARPP
Ga0210392_107523422	3300021475	Soil	MESFIHRQKLVTYRRLIAESERDPARDQVQHNWLLKLLADEEATDAKPL
Ga0208479_11037592	3300025474	Arctic Peat Soil	VELFIHEQNIAHYRRLIAESERDPARNEVQHNWLLKLLADAEAENIKPLHQRH
Ga0207932_10065614	3300025495	Arctic Peat Soil	MERFIHDRNLAHYRRLIAESERDPARDEVQHNWLLKLLADEEANDLHPSH
Ga0209838_10047453	3300026214	Soil	MERHIHEWNLAHYRRLVVESERDPARNEVQHNWLLKLLADAEVEDAKPLGRRH
Ga0209871_10322471	3300026217	Permafrost Soil	HIHEQNLAHYRRLVVESERDPARNEVQHNWLLKLLADAEAEDAKPLDRRH
Ga0209863_100055276	3300026281	Prmafrost Soil	MERYIRDQNLAHYRRLVAESERDPARNQVQHNWLLKLLADEEAEDAKPQDRRH
Ga0209890_100182504	3300026291	Soil	MERHNHEQNLAHCRRLVADSKRDPLRNEAQLDWLLKLLADEEAEDSKPLDGRH
Ga0209890_100990462	3300026291	Soil	MERHIHEQNLAHYRRLVVESERDPARNEVQHNWLLKLLADAEAEDAKPLDRRH
Ga0257150_10190502	3300026356	Soil	MERYIHDQNLAHYRRLVAESERDPSRNQVQHNWLLKLLADEEAEAAKPKDRRH
Ga0257156_11038841	3300026498	Soil	MERYIHDQNLAHYRRLVAESERDPSRNQVQHDWLLKLLADEEAESAKPQDRRH
Ga0209524_10751212	3300027521	Forest Soil	MERHNHEQNLAHCRRLLAESKRDPLRNEVQLDWLLKLLADEETEDSKSLDGTH
Ga0209527_10721292	3300027583	Forest Soil	MESFIHRQKLVNYRRLIAESERDPVRNQVQHDWLLKLLADEEALDARPP
Ga0209527_11490972	3300027583	Forest Soil	MERHNHERNLAHCRRLVAESERDPSRNQVQHNWLLKLLADEEAESAKPQDRRH
Ga0209331_10117863	3300027603	Forest Soil	MERFIHYENLAHYRRLIAASERDPARNEVQHNWLLKLLADEEAKDVYPPR
Ga0209528_10990202	3300027610	Forest Soil	RYIHDQNLAHYRRLVAESERDPSRNQVQHNWLLKLLADEEAESAKPQDRRH
Ga0209117_10336683	3300027645	Forest Soil	MELFIHKQNLAHYRRLIAESERDPARNEVQHNWLLKLLADEEAEDIKPLNSRH
Ga0209420_11893672	3300027648	Forest Soil	MESFIHRQKLVTYRRLIAESERDPARDQVQHNWLLKLLADEEAMDAKPL
Ga0209011_11117382	3300027678	Forest Soil	MDRHIHEQNLAHYRRLLAESESDPSRNEVQHNWLLKLLADAEAEDTKPLDRRH
Ga0209626_10416792	3300027684	Forest Soil	MESFIHRQKLVTYRRLIAESERDPVRNQIQHDWLLKLLADEEALDAKPL
Ga0209590_104829572	3300027882	Vadose Zone Soil	MERHIHEQNLAHYRRLLAESDRNLERNEVQHNWLLKLLTDEEAEDAKPRYRRH
Ga0209068_100144212	3300027894	Watersheds	MERYIHDQNLAHYRRLVAESERDPSRNQVQHNWLLKLLADEEAESAKPQDRRH
Ga0209068_104761382	3300027894	Watersheds	MERHIHEQNLAHYRRLLAGSDRNLERNEVQHNWLLKLLTDEEAEDAKPRYRRH
Ga0209006_115383401	3300027908	Forest Soil	MESFIHRQKLVTYRRLIAESERDPARDQVQHNWLLKLLADEEAMDAKPP
Ga0209583_101615512	3300027910	Watersheds	MERYTHQQNLAHYRRLLAESERDPVRNEVQHNWLLKLLADEEAEDAKPQDRRH
Ga0209069_100380835	3300027915	Watersheds	RYTHQQNLAHYRRLLAESERDPARNEVQHNWLLKLLADEEAEDAKPQDRRH
Ga0209069_104682261	3300027915	Watersheds	MERHNHEQNLAHCRRLVAEAKLDPLRNEAQLDWLLKLLADEQAEDSKSLDGTH
Ga0209526_100933541	3300028047	Forest Soil	MERHNHEQNLAHCRRLVAESKRDPLRNEAQLDWLLKLLADEEAEDSKSPDGTH
Ga0209526_103312292	3300028047	Forest Soil	MERYIHDQNLAHYRRLVAESERDPARNQVQHDWLLKLLADEEAEHARPQDRRH
Ga0209526_103774483	3300028047	Forest Soil	MDRYIHDQNLAHYRRLVAESERDPSRNQVQHNWLLKLLADEEAEDAKPKDRRH
Ga0307277_104265381	3300028881	Soil	MERHIHEQNLAHYRRLLAESDRNPERNEMQHKWLLKLLTDEEAEDAKPRYRRH
Ga0308189_102685331	3300031058	Soil	MERHIYEQNLAHYRRLLAESDRNPERNEAQHNWLLKLLTDEEAEDAKPRYRRH
Ga0308197_102047292	3300031093	Soil	MERHIHEQNLAHYRRLLVESDRNPERNEVQHNWLLKLLTDEEAEDAKPRYRRH
Ga0308199_10768061	3300031094	Soil	LEVTMERHIHEQNLAHYRRLLAESDRNPDRNEVQHNWLLKLLTDEEAENAKPRYRRH
Ga0265331_104378892	3300031250	Rhizosphere	SSMSSPEVTLELFIHERNIAHYRRLIAESERDPARNEVQHSWLLKLLADAEAEEIKPLHQRH
Ga0302320_107814852	3300031524	Bog	MERFIHEQNLANYRRLVAESERNPARDEVQHNWLLKLLADEEAEHIKPLGRRH
Ga0310686_1116810911	3300031708	Soil	MESFIHRQKLVTYRRLIAESERDPARNQVQHDWLLKLLADEEAMDAKPL
Ga0370493_0360861_166_327	3300034129	Untreated Peat Soil	MERYIHEQNLAHYRRLIAESTLDPDRNEIQHTWLLKLLADEIAKAAMSSGLRH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052725

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences