Metagenome / Metatranscriptome Family F052544

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F052544
Family Type	Metagenome / Metatranscriptome
Number of Sequences	142
Average Sequence Length	42 residues
Representative Sequence	MTITQKLQRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLD
Number of Associated Samples	67
Number of Associated Scaffolds	142

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	60.56 %
% of genes near scaffold ends (potentially truncated)	36.62 %
% of genes from short scaffolds (< 2000 bps)	88.03 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.817 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater (53.521 % of family members)
Environment Ontology (ENVO)	Unclassified (90.141 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (96.479 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.70% β-sheet: 0.00% Coil/Unstructured: 49.30%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.2.21.1: YznC-like	d3bhpa_	3bhp	0.83842
a.244.1.1: EF2947-like	d2au5a1	2au5	0.82126
c.55.3.5: DnaQ-like 3'-5' exonuclease	d2q3sa2	2q3s	0.77753
e.18.1.0: automated matches	d5odqf_	5odq	0.77207
a.236.1.1: DNA primase DnaG, C-terminal domain	d6cbra1	6cbr	0.7697

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 142 Family Scaffolds
PF14090	HTH_39	17.61
PF09588	YqaJ	9.15
PF10263	SprT-like	4.23
PF03837	RecT	2.11
PF08401	ArdcN	0.70
PF02005	TRM	0.70
PF03237	Terminase_6N	0.70
PF13884	Peptidase_S74	0.70
PF07120	DUF1376	0.70

COG ID	Name	Functional Category	% Frequency in 142 Family Scaffolds
COG3723	Recombinational DNA repair protein RecT	Replication, recombination and repair [L]	2.11
COG1867	tRNA G26 N,N-dimethylase Trm1	Translation, ribosomal structure and biogenesis [J]	0.70
COG3756	Uncharacterized conserved protein YdaU, DUF1376 family	Function unknown [S]	0.70
COG4227	Antirestriction protein ArdC	Replication, recombination and repair [L]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.35 %
Unclassified	root	N/A	24.65 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.82 %
Unclassified	root	N/A	24.65 %
Viruses	superkingdom	All Organisms → Viruses	22.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.82 %
Unclassified	root	N/A	24.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.90 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	4.93 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.99 %
Unclassified	root	N/A	24.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.90 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	6.34 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	4.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	22.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.90 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	7.75 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	4.93 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	3.52 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.65 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	22.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7.75 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4.93 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	3.52 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	2.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.90 %
Marinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae	16.20 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	7.75 %
unclassified Pseudomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales	6.34 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	4.23 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	3.52 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.82 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.90 %
Marinobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	16.20 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	7.75 %
Pseudomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	6.34 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	4.23 %
Prochlorococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae	3.52 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.82 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.90 %
unclassified Marinobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter	16.20 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	7.75 %
Pseudomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	6.34 %
unclassified Siphoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae	4.23 %
Prochlorococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	3.52 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.82 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.90 %
Marinobacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	16.20 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	7.75 %
Pseudomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	6.34 %
Synechococcus phage S-CBS4	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4	4.23 %
Prochlorococcus marinus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	3.52 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.82 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.70 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002482\|JGI25127J35165_1025252	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300002482\|JGI25127J35165_1072404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	717	Open in IMG/M
3300002483\|JGI25132J35274_1047477	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4	935	Open in IMG/M
3300002488\|JGI25128J35275_1010838	All Organisms → Viruses → Predicted Viral	2370	Open in IMG/M
3300002488\|JGI25128J35275_1063186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	782	Open in IMG/M
3300004831\|Ga0069134_171763	All Organisms → Viruses → Predicted Viral	1040	Open in IMG/M
3300005522\|Ga0066861_10138074	Not Available	844	Open in IMG/M
3300006735\|Ga0098038_1020256	All Organisms → cellular organisms → Bacteria	2533	Open in IMG/M
3300006735\|Ga0098038_1036637	All Organisms → cellular organisms → Bacteria	1812	Open in IMG/M
3300006735\|Ga0098038_1044879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	1611	Open in IMG/M
3300006735\|Ga0098038_1263672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	541	Open in IMG/M
3300006737\|Ga0098037_1018404	Not Available	2625	Open in IMG/M
3300006737\|Ga0098037_1040230	All Organisms → Viruses	1705	Open in IMG/M
3300006737\|Ga0098037_1064418	All Organisms → Viruses → Predicted Viral	1304	Open in IMG/M
3300006737\|Ga0098037_1234619	Not Available	592	Open in IMG/M
3300006928\|Ga0098041_1037428	All Organisms → Viruses → Predicted Viral	1580	Open in IMG/M
3300009550\|Ga0115013_10044760	All Organisms → Viruses → Predicted Viral	2421	Open in IMG/M
3300009790\|Ga0115012_10837610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	748	Open in IMG/M
3300009790\|Ga0115012_11993131	Not Available	514	Open in IMG/M
3300012953\|Ga0163179_10479340	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300012953\|Ga0163179_10508657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	997	Open in IMG/M
3300012953\|Ga0163179_10582465	Not Available	936	Open in IMG/M
3300012953\|Ga0163179_10807486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	805	Open in IMG/M
3300012953\|Ga0163179_10944612	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300012953\|Ga0163179_11030270	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	719	Open in IMG/M
3300012953\|Ga0163179_11060759	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	710	Open in IMG/M
3300017720\|Ga0181383_1005584	All Organisms → Viruses → Predicted Viral	3408	Open in IMG/M
3300017720\|Ga0181383_1096392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	794	Open in IMG/M
3300017720\|Ga0181383_1144806	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300017730\|Ga0181417_1026202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	1449	Open in IMG/M
3300017732\|Ga0181415_1035808	All Organisms → Viruses → Predicted Viral	1140	Open in IMG/M
3300017732\|Ga0181415_1048349	Not Available	969	Open in IMG/M
3300017732\|Ga0181415_1049610	Not Available	955	Open in IMG/M
3300017732\|Ga0181415_1065115	Not Available	825	Open in IMG/M
3300017732\|Ga0181415_1076938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	753	Open in IMG/M
3300017732\|Ga0181415_1132239	Not Available	560	Open in IMG/M
3300017733\|Ga0181426_1019527	All Organisms → Viruses → Predicted Viral	1332	Open in IMG/M
3300017733\|Ga0181426_1032313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	1031	Open in IMG/M
3300017733\|Ga0181426_1053502	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	799	Open in IMG/M
3300017733\|Ga0181426_1102824	Not Available	573	Open in IMG/M
3300017738\|Ga0181428_1099485	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300017738\|Ga0181428_1148754	Not Available	547	Open in IMG/M
3300017738\|Ga0181428_1171809	Not Available	506	Open in IMG/M
3300017739\|Ga0181433_1024248	Not Available	1599	Open in IMG/M
3300017739\|Ga0181433_1112310	Not Available	657	Open in IMG/M
3300017740\|Ga0181418_1066410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	887	Open in IMG/M
3300017743\|Ga0181402_1039273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	1298	Open in IMG/M
3300017743\|Ga0181402_1046806	All Organisms → Viruses → Predicted Viral	1173	Open in IMG/M
3300017743\|Ga0181402_1082903	Not Available	838	Open in IMG/M
3300017743\|Ga0181402_1090120	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	797	Open in IMG/M
3300017743\|Ga0181402_1104109	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300017744\|Ga0181397_1128501	Not Available	656	Open in IMG/M
3300017745\|Ga0181427_1093476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	735	Open in IMG/M
3300017745\|Ga0181427_1133446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	604	Open in IMG/M
3300017746\|Ga0181389_1046751	All Organisms → Viruses → Predicted Viral	1272	Open in IMG/M
3300017748\|Ga0181393_1025261	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1712	Open in IMG/M
3300017750\|Ga0181405_1103536	Not Available	717	Open in IMG/M
3300017753\|Ga0181407_1027067	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4	1557	Open in IMG/M
3300017753\|Ga0181407_1043744	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1182	Open in IMG/M
3300017755\|Ga0181411_1010146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3137	Open in IMG/M
3300017755\|Ga0181411_1101094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	852	Open in IMG/M
3300017756\|Ga0181382_1048364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	1233	Open in IMG/M
3300017756\|Ga0181382_1078561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	914	Open in IMG/M
3300017756\|Ga0181382_1090239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	838	Open in IMG/M
3300017756\|Ga0181382_1099004	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300017758\|Ga0181409_1093739	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300017760\|Ga0181408_1164816	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300017760\|Ga0181408_1165903	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	566	Open in IMG/M
3300017764\|Ga0181385_1037910	All Organisms → cellular organisms → Bacteria	1515	Open in IMG/M
3300017764\|Ga0181385_1038470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	1503	Open in IMG/M
3300017764\|Ga0181385_1050762	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1292	Open in IMG/M
3300017764\|Ga0181385_1173443	Not Available	652	Open in IMG/M
3300017765\|Ga0181413_1043561	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300017765\|Ga0181413_1056152	Not Available	1217	Open in IMG/M
3300017765\|Ga0181413_1070920	All Organisms → Viruses → Predicted Viral	1069	Open in IMG/M
3300017765\|Ga0181413_1108726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	843	Open in IMG/M
3300017765\|Ga0181413_1135310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	745	Open in IMG/M
3300017765\|Ga0181413_1143491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	721	Open in IMG/M
3300017767\|Ga0181406_1047179	All Organisms → Viruses → Predicted Viral	1335	Open in IMG/M
3300017767\|Ga0181406_1121644	Not Available	787	Open in IMG/M
3300017767\|Ga0181406_1187510	Not Available	616	Open in IMG/M
3300017768\|Ga0187220_1091260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	919	Open in IMG/M
3300017769\|Ga0187221_1136099	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300017769\|Ga0187221_1165176	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4	651	Open in IMG/M
3300017771\|Ga0181425_1061829	All Organisms → cellular organisms → Bacteria	1213	Open in IMG/M
3300017771\|Ga0181425_1291427	Not Available	501	Open in IMG/M
3300017772\|Ga0181430_1165647	Not Available	639	Open in IMG/M
3300017773\|Ga0181386_1049730	All Organisms → Viruses → Predicted Viral	1349	Open in IMG/M
3300017773\|Ga0181386_1065372	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300017773\|Ga0181386_1217358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	571	Open in IMG/M
3300017779\|Ga0181395_1049451	All Organisms → Viruses → Predicted Viral	1389	Open in IMG/M
3300017786\|Ga0181424_10035629	All Organisms → Viruses → Predicted Viral	2158	Open in IMG/M
3300019025\|Ga0193545_10148210	Not Available	501	Open in IMG/M
3300020296\|Ga0211474_1010447	All Organisms → cellular organisms → Bacteria	1767	Open in IMG/M
3300020305\|Ga0211513_1021384	Not Available	999	Open in IMG/M
3300020312\|Ga0211542_1047302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	802	Open in IMG/M
3300020312\|Ga0211542_1082487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	565	Open in IMG/M
3300020394\|Ga0211497_10102122	All Organisms → Viruses → Predicted Viral	1158	Open in IMG/M
3300020394\|Ga0211497_10172281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	836	Open in IMG/M
3300020401\|Ga0211617_10209910	Not Available	810	Open in IMG/M
3300020411\|Ga0211587_10135118	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4	1053	Open in IMG/M
3300020428\|Ga0211521_10413853	Not Available	588	Open in IMG/M
3300020442\|Ga0211559_10041287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	2287	Open in IMG/M
3300020452\|Ga0211545_10119425	All Organisms → Viruses → Predicted Viral	1235	Open in IMG/M
3300020454\|Ga0211548_10022241	All Organisms → cellular organisms → Bacteria → Proteobacteria	2915	Open in IMG/M
3300020454\|Ga0211548_10154045	Not Available	1109	Open in IMG/M
3300020469\|Ga0211577_10128095	All Organisms → Viruses → Predicted Viral	1731	Open in IMG/M
3300020469\|Ga0211577_10424540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	818	Open in IMG/M
3300020474\|Ga0211547_10149435	All Organisms → Viruses → Predicted Viral	1211	Open in IMG/M
3300020474\|Ga0211547_10234475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	938	Open in IMG/M
3300020475\|Ga0211541_10103105	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1410	Open in IMG/M
3300022066\|Ga0224902_100962	Not Available	1390	Open in IMG/M
3300022066\|Ga0224902_101234	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4	1253	Open in IMG/M
3300022066\|Ga0224902_101964	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300022066\|Ga0224902_103938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	753	Open in IMG/M
3300022074\|Ga0224906_1000158	Not Available	37577	Open in IMG/M
3300022074\|Ga0224906_1024416	All Organisms → Viruses → Predicted Viral	2130	Open in IMG/M
3300022074\|Ga0224906_1025398	All Organisms → Viruses → Predicted Viral	2075	Open in IMG/M
3300022074\|Ga0224906_1027839	Not Available	1960	Open in IMG/M
3300022074\|Ga0224906_1046827	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
3300022074\|Ga0224906_1138824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	692	Open in IMG/M
3300025086\|Ga0208157_1004928	Not Available	4897	Open in IMG/M
3300025086\|Ga0208157_1013243	All Organisms → cellular organisms → Bacteria	2665	Open in IMG/M
3300025086\|Ga0208157_1080319	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300025101\|Ga0208159_1056284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	797	Open in IMG/M
3300025127\|Ga0209348_1000506	Not Available	20343	Open in IMG/M
3300025132\|Ga0209232_1040639	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1740	Open in IMG/M
3300025132\|Ga0209232_1147800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	753	Open in IMG/M
3300025132\|Ga0209232_1181672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	653	Open in IMG/M
3300025132\|Ga0209232_1215917	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	576	Open in IMG/M
3300025151\|Ga0209645_1063359	All Organisms → Viruses → Predicted Viral	1264	Open in IMG/M
3300025151\|Ga0209645_1075665	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4	1127	Open in IMG/M
3300027859\|Ga0209503_10020591	All Organisms → Viruses → Predicted Viral	2937	Open in IMG/M
3300029787\|Ga0183757_1031294	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1113	Open in IMG/M
3300029787\|Ga0183757_1035175	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300029787\|Ga0183757_1054466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	671	Open in IMG/M
3300029787\|Ga0183757_1057026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	643	Open in IMG/M
3300031774\|Ga0315331_10324122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	1134	Open in IMG/M
3300031785\|Ga0310343_10695230	Not Available	760	Open in IMG/M
3300032011\|Ga0315316_10063962	All Organisms → Viruses → Predicted Viral	2958	Open in IMG/M
3300032047\|Ga0315330_10746404	Not Available	566	Open in IMG/M
3300032073\|Ga0315315_11700527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	540	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Strait	Environmental → Aquatic → Marine → Strait	53.52%
Oceanic	Environmental → Aquatic → Marine → Oceanic	26.76%
Unclassified	Environmental → Aquatic → Marine → Unclassified	16.20%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.82%
Coastal	Environmental → Aquatic → Marine → Coastal	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	53.52%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	26.76%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	16.20%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	2.82%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	53.52%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	21.13%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	16.20%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	4.93%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	2.82%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.70%
Surface Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Surface Seawater	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002482	Marine viral communities from the Pacific Ocean - ETNP_2_30	Environmental	Open in IMG/M
3300002483	Marine viral communities from the Pacific Ocean - ETNP_6_30	Environmental	Open in IMG/M
3300002488	Marine viral communities from the Pacific Ocean - ETNP_2_60	Environmental	Open in IMG/M
3300004831	Marine surface microbial communities from the North Atlantic Ocean - filtered matter	Environmental	Open in IMG/M
3300005522	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006737	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG	Environmental	Open in IMG/M
3300006928	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG	Environmental	Open in IMG/M
3300009550	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome	Environmental	Open in IMG/M
3300009790	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome	Environmental	Open in IMG/M
3300012953	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome	Environmental	Open in IMG/M
3300017720	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23	Environmental	Open in IMG/M
3300017730	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13	Environmental	Open in IMG/M
3300017732	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11	Environmental	Open in IMG/M
3300017733	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23	Environmental	Open in IMG/M
3300017738	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12	Environmental	Open in IMG/M
3300017739	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10	Environmental	Open in IMG/M
3300017740	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13	Environmental	Open in IMG/M
3300017743	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17	Environmental	Open in IMG/M
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental	Open in IMG/M
3300017745	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15	Environmental	Open in IMG/M
3300017746	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29	Environmental	Open in IMG/M
3300017748	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21	Environmental	Open in IMG/M
3300017750	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29	Environmental	Open in IMG/M
3300017753	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26	Environmental	Open in IMG/M
3300017755	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09	Environmental	Open in IMG/M
3300017756	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22	Environmental	Open in IMG/M
3300017758	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30	Environmental	Open in IMG/M
3300017760	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16	Environmental	Open in IMG/M
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental	Open in IMG/M
3300017765	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28	Environmental	Open in IMG/M
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental	Open in IMG/M
3300017768	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)	Environmental	Open in IMG/M
3300017769	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)	Environmental	Open in IMG/M
3300017771	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13	Environmental	Open in IMG/M
3300017772	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10	Environmental	Open in IMG/M
3300017773	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24	Environmental	Open in IMG/M
3300017779	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16	Environmental	Open in IMG/M
3300017786	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18	Environmental	Open in IMG/M
3300019025	Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001565 (ERX1399745-ERR1328126)	Environmental	Open in IMG/M
3300020296	Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX556002-ERR599140)	Environmental	Open in IMG/M
3300020305	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX556024-ERR599003)	Environmental	Open in IMG/M
3300020312	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX556125-ERR598977)	Environmental	Open in IMG/M
3300020394	Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)	Environmental	Open in IMG/M
3300020401	Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)	Environmental	Open in IMG/M
3300020411	Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)	Environmental	Open in IMG/M
3300020428	Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)	Environmental	Open in IMG/M
3300020442	Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)	Environmental	Open in IMG/M
3300020452	Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)	Environmental	Open in IMG/M
3300020454	Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)	Environmental	Open in IMG/M
3300020469	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)	Environmental	Open in IMG/M
3300020474	Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)	Environmental	Open in IMG/M
3300020475	Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)	Environmental	Open in IMG/M
3300022066	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28 (v2)	Environmental	Open in IMG/M
3300022074	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)	Environmental	Open in IMG/M
3300025086	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)	Environmental	Open in IMG/M
3300025101	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)	Environmental	Open in IMG/M
3300025127	Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)	Environmental	Open in IMG/M
3300025132	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)	Environmental	Open in IMG/M
3300025151	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)	Environmental	Open in IMG/M
3300027859	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)	Environmental	Open in IMG/M
3300029787	Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172	Environmental	Open in IMG/M
3300031774	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915	Environmental	Open in IMG/M
3300031785	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG	Environmental	Open in IMG/M
3300032011	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416	Environmental	Open in IMG/M
3300032047	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915	Environmental	Open in IMG/M
3300032073	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25127J35165_10252524	3300002482	Marine	MTDTQKLERLAYLASLPYLDHTPEDWDEELRLECELQDLDQ*
JGI25127J35165_10724041	3300002482	Marine	MTDTQKLERLDYLSSLPYLDHTPEDWDEELRLECELQDLDQ*
JGI25132J35274_10474772	3300002483	Marine	MTDIQKLKRLAYLASLPYLDHTSEDWDEELRLECELQDSDQ*
JGI25128J35275_10108387	3300002488	Marine	MNDIQKLKRLAYLASLPYSAHTPEMWDEELALECELDHLNQLDK*
JGI25128J35275_10631861	3300002488	Marine	MTITQKLKRLDYLSSLPYLAHTSEDWDEELRLECELDHLNQLD
Ga0069134_1717631	3300004831	Surface Seawater	KLQRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLDQ*
Ga0066861_101380742	3300005522	Marine	MAITNMTTQEKLQRLDYLSSLSYLEHTSEDWDEELRLECELDQ*
Ga0098038_10202564	3300006735	Marine	MNYTQKLQRLDFLSSLPYLDHTSEDWDEQLRLECELDHLNQLDQ*
Ga0098038_10366374	3300006735	Marine	MPDTQKLQRLDYLSSLPYLDHTSEDWDEELKLECELDHLNQLDK*
Ga0098038_10448793	3300006735	Marine	MSIQEKLQRLDYLSSLPYLDHTPKDWDEELRLECELDHLNQLDQ*
Ga0098038_12636722	3300006735	Marine	MTITQKLQRLASLASLPYLDHTPEDWDEELKLECELDHLNQLDQ*
Ga0098037_10184044	3300006737	Marine	MTITQKLQRLASLASLPYLDHTPEDWDEELRLECELDHLNQLDQ*
Ga0098037_10402304	3300006737	Marine	MGITQKLQRLDYLSSLPYLDHTPEDWDEELKLECELDHLNQLDQ*
Ga0098037_10644183	3300006737	Marine	EKLQRLDYLSSLPYLDHTPKDWDEELRLECELDHLNQLDQ*
Ga0098037_12346191	3300006737	Marine	RKVGCVMPDTQKLQRLDFLSSLPYSAHTSEMWDEELRLECELDHLNQLDK*
Ga0098041_10374287	3300006928	Marine	MTDTQKLERLDFLSSLSYSDHTSEDWDEELRLECEL
Ga0115013_100447605	3300009550	Marine	MDIIQKLRRLDFLSSLPYLDHTSEDWDEELRLECELDHLNQLDQ*
Ga0115012_108376101	3300009790	Marine	MTDTQKLERLAYLADLPFNAHTSEDWDEELRLECELQ
Ga0115012_119931311	3300009790	Marine	MTIEEKLERLDYLSSLSYSDHTPEDWDEELALESELQDHPQFKSF
Ga0163179_104793403	3300012953	Seawater	MSIQEKLQRLDYLSSLPYLNHTSEDWDEELRLECELDHLNQLDK*
Ga0163179_105086574	3300012953	Seawater	MTDTKKLQRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLDQ*
Ga0163179_105824651	3300012953	Seawater	TQKLQRLDYLSSLPYLDHTSEDWDEELRLECELDHLNELNK*
Ga0163179_108074862	3300012953	Seawater	MTITQKLQRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLD
Ga0163179_109446121	3300012953	Seawater	MKIQEKLQRLDYLSSLPYLDHTPEDWDEELRLECELQDEDQ*
Ga0163179_110302703	3300012953	Seawater	MPDTQKLQRLDYLSSLPYLDHTSEDWDEELRLECELDHLN
Ga0163179_110607592	3300012953	Seawater	MTDTQKLQRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQL
Ga0181383_10055848	3300017720	Seawater	MTITQKLQRLDYLSSLPYLDHTSEDWDEELKLECELDHLNQLDK
Ga0181383_10963922	3300017720	Seawater	MTIQEKLQRLDFLSSLPYLDHTSEDWDEQLRLECELQDLDQ
Ga0181383_11448061	3300017720	Seawater	MSIQEKLQRLDYLSSLPYSAHTPEMWDEELRLECELQDSDQ
Ga0181417_10262025	3300017730	Seawater	MTITQKLQRLDYLSSLPYLDHTSEDWDEELKLECELDHL
Ga0181415_10358083	3300017732	Seawater	MPDTQKLKRLDYLSSLPYSAHTSEDWDEELRLECELQDSDQ
Ga0181415_10483491	3300017732	Seawater	QKLKRLAYLASLPYSAHTPEMWDEELALECELDHLNQLDK
Ga0181415_10496101	3300017732	Seawater	MLDTQKLKRLDYWSSLPYLDHTPEDWDEELRLECELDHLNQLDK
Ga0181415_10651152	3300017732	Seawater	MTDTQKLQRLDFLSSLPYLDHTSEDWDEELRLECDLDHPNQLDK
Ga0181415_10769382	3300017732	Seawater	MTIQEKLQRLDFLSSLPYLAHTPEDWDEELRLECELQDVDQ
Ga0181415_11322391	3300017732	Seawater	LMPDTQKLQRLDYLSSLPYSAHTPEMWDEELRLECELDHLNQLDQ
Ga0181426_10195273	3300017733	Seawater	MPDTQKLQRLAYLASLPYLDHTPEDWDEELRLECELQDSDQ
Ga0181426_10323133	3300017733	Seawater	MTITQKLKRLDYLSSLPYLDHTSEDWDEELKLECELDHLNQLDK
Ga0181426_10535022	3300017733	Seawater	MNDTQKLKRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLDQ
Ga0181426_11028243	3300017733	Seawater	MPDTQKLKKLDYLSSLPYLDHTPEDWDEELRLECELQDVDQ
Ga0181428_10994851	3300017738	Seawater	MNIQEKLKRLDFLSSLPYSAHTPEMWDEELKLECELDHLNQLDK
Ga0181428_11487542	3300017738	Seawater	MSIQEKLQRLDFLSSLSYLDHTSDDWDEELKLECELDHLNQLDQ
Ga0181428_11718092	3300017738	Seawater	MLDTQKLQRLDFLSSLPYSAHTPEMWDEELRLECELDHLNQLDK
Ga0181433_10242485	3300017739	Seawater	MSIQEKLQRLDFLSSLSYLDHTSDDWDEELRLECELDHLNQLDK
Ga0181433_11123103	3300017739	Seawater	MPDTQKLQRLAYLASLPYLDHTPEDWDEELRLECELDHLNQLD
Ga0181418_10664103	3300017740	Seawater	MTITQKLKRLDYLSSLPYLDHTSEDWDEELRLECELQDSDQ
Ga0181402_10392735	3300017743	Seawater	MIITQKLQRLDFLSSLPYLDHTSEDWDEELRLECELDHLNQLDK
Ga0181402_10468061	3300017743	Seawater	KLQRLDFLSSLPYSAHTPEMWDEELRLECELDHLNQLDK
Ga0181402_10829034	3300017743	Seawater	LDFLSSLPYLDHTSEDWDEELRLECELDHLNQLDK
Ga0181402_10901201	3300017743	Seawater	MNYTQKLQRLDFLSSLPYSAHTPEMWDEELRLECELDHL
Ga0181402_11041093	3300017743	Seawater	MSIQEKLQRLDFLSSLPYLDHTSEDWDEELRLECELDHLNQLDK
Ga0181397_11285013	3300017744	Seawater	MSIQEKLQRLDYLSSLIYSAHTPEMWDEELRLECELDHLNQLDQ
Ga0181427_10934762	3300017745	Seawater	MTITQKLKRLDYLSSLPYSAHTPEMWDEELRLECELDHLNQLDQ
Ga0181427_11334461	3300017745	Seawater	SIQEKLQRLDFLSSLSYLDHTSDDWDEELRLECELDHLNQLDK
Ga0181389_10467511	3300017746	Seawater	NDTQKLERLAFLANLPYSAHTPEMWDEELRLECELDHLNQLDK
Ga0181393_10252611	3300017748	Seawater	DTQKLQRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLDQ
Ga0181405_11035361	3300017750	Seawater	MSIQEKLQRLDFLSSLIYSAHTPEMWDEELRLECELDHLNQ
Ga0181407_10270674	3300017753	Seawater	MTITQKLKRLDYLSSLPYLDHTPEDWDEELRLECELQDVDQ
Ga0181407_10437443	3300017753	Seawater	MTDTQKLQRLDFLSSLPYSAHTPEMWDEELRLECELDHLNQLDK
Ga0181411_10101462	3300017755	Seawater	MSIQEKLQRLDYLSSLPYSAHTPEDWDEELRLECELQDVDQ
Ga0181411_11010942	3300017755	Seawater	MTIQEKLQRLDYLSSLPYLDHTPEDWDEELRLECELQDSDQ
Ga0181382_10483642	3300017756	Seawater	MTITQKLQRLDYLSSLPYSAHTPEMWDEELKLECELDHLNQLDK
Ga0181382_10785613	3300017756	Seawater	MTITQKLKRLDYLSSLPYLDHTSDDWDEELRLECELDHLNQLDK
Ga0181382_10902391	3300017756	Seawater	MPDTQKLKRLDYLSSLPYSAHTPEDWDEELRLECELQDVDQ
Ga0181382_10990042	3300017756	Seawater	MKDTQKLQRLDYLSSLPYLDHTPEDWDEELRLECELQDVDQ
Ga0181409_10937393	3300017758	Seawater	MSIQEKLQRLDFLSSLPYSAHTPEMWDEELRLECELDHLNQLDK
Ga0181408_11648161	3300017760	Seawater	MSIQEKLQRLDFLSSLPYSAHTPEMWDEELRLECELDH
Ga0181408_11659031	3300017760	Seawater	MNYTQKLQRLDFLSSLPYSAHTPEMWDEELRLECELDHLNQLDK
Ga0181385_10379101	3300017764	Seawater	MNDIQKLKRLAYLASLPYSAHTPEDWDEELRLECELDHLNQLDQ
Ga0181385_10384703	3300017764	Seawater	MTITQKLKRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLDK
Ga0181385_10507624	3300017764	Seawater	MNDIQKLERLDFLSSLSYSDHTSEDWDEELRLECELQ
Ga0181385_11734433	3300017764	Seawater	CSQMTITQKLQRLDYLSSLPYLDHTSEDWDEELKLECELDHLNQLDK
Ga0181413_10435614	3300017765	Seawater	MPDTQKLQRLDYLSSLPYSAHTPEMWDEELALECELDHLNQLDK
Ga0181413_10561521	3300017765	Seawater	LKRLDYLSSLPYSAHTPEMWDEELRLECELDHLNQLDQ
Ga0181413_10709203	3300017765	Seawater	MIITQKLQRLDYLSSLPYLDHTSEDWDEELKLECELDHLNQLDK
Ga0181413_11087261	3300017765	Seawater	MTITQRLKRLDYLSSLPYSAHTPEMWDEELRLECELDHLN
Ga0181413_11353104	3300017765	Seawater	RLDFLSSLPYSAHTPEMWDEELRLECELDHLNQLDK
Ga0181413_11434911	3300017765	Seawater	MSIQEKLQRLDYLSSLPYSAHTPEMWDEELKLECELDHLNQLDQ
Ga0181406_10471792	3300017767	Seawater	MTDIQKLERLAFLANLPYTSHTSKDWDEELKLECELDHLNQLDQ
Ga0181406_11216442	3300017767	Seawater	MSIQEKLQRLDFLSSLIYSAHTPEMWDEELRLECELDHLNQLDK
Ga0181406_11875102	3300017767	Seawater	MSDTQKLKRLDYLSSLPYLDHTSEDWDEELRLECELQDSDQ
Ga0187220_10912603	3300017768	Seawater	MTITQKLKRLDYLSSLPYLDHTSEDWDEELKLECELDHLNQ
Ga0187221_11360992	3300017769	Seawater	MKDTQKLQRLDYLSSLPYLDHTPEDWDEELRLECE
Ga0187221_11651762	3300017769	Seawater	MTITQKLKRLDYLSSLPYSAHTPEDWDEELRLECELQDVDQ
Ga0181425_10618294	3300017771	Seawater	MSIQEKLQRLDYLSSLPYSAHTPEMWDEELRLECELDHLNQLDQ
Ga0181425_12914271	3300017771	Seawater	MSIQEKLQRLDYLSSLIYSAHTPEMWDEELRLECELDHLNQLDK
Ga0181430_11656472	3300017772	Seawater	MSIQEKLQRLDFLSSLPYLDHTPEDWDEELKLECELDHLNQLDQ
Ga0181386_10497303	3300017773	Seawater	MTITQKLQRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLDK
Ga0181386_10653723	3300017773	Seawater	MSIQEKLQRLDYLSSLPYSAHTPEMWDEELRLECELDHLNQLDK
Ga0181386_12173582	3300017773	Seawater	MTIQEKLQRLDFLSSLPYLDHTPEDWDEELRLECELQDLDQ
Ga0181395_10494513	3300017779	Seawater	MTDTQKLQRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLDQ
Ga0181424_100356291	3300017786	Seawater	MNYTQKLQRLDYLSSLPYSAHTPEMWDEELRLECELDHLNQLDK
Ga0193545_101482102	3300019025	Marine	MSIQEKLKRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLDK
Ga0211474_10104472	3300020296	Marine	MSIQEKLQRLDYLSSLPYLDHTPEDWDEELRLECELQDLDQ
Ga0211513_10213842	3300020305	Marine	MNDTQKLQRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLDQ
Ga0211542_10473022	3300020312	Marine	MTDTQKLERLAFLANLPYCKHTSEDWEEELRLECELQD
Ga0211542_10824872	3300020312	Marine	MTDQQKLERLAFLADLPYCKHTSEDWEEELRLECELQD
Ga0211497_101021221	3300020394	Marine	MNDTQKLERLAFLANLPYCKHTSEDWEEELRLECELQD
Ga0211497_101722814	3300020394	Marine	MTDTQKLKRLDYLSSLPYLDHTPEDWDEELRLECELQDSDQ
Ga0211617_102099101	3300020401	Marine	MTDTQKLQRLAYLASLPYLDHTPEDWDEELRLECELQ
Ga0211587_101351183	3300020411	Marine	MTDTQKLQRLDYLSSLPYSDHTPEDWDEELRLECELQDLDQ
Ga0211521_104138533	3300020428	Marine	MSIQEKLQRLAFLSNLPYLDHTSEDWDEELRLECELDHLNQLDQ
Ga0211559_100412877	3300020442	Marine	MTTQEKLQRLDYLSSLSYLEHTSEDWDEELRLECELQDLDQ
Ga0211545_101194251	3300020452	Marine	MNDTQKLQRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLD
Ga0211548_100222411	3300020454	Marine	TQKLQRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLDQ
Ga0211548_101540452	3300020454	Marine	MLDTQKLKRLDYLSSLPYLDHTPEDWDEELRLECELQDVDQ
Ga0211577_101280954	3300020469	Marine	MNYTQKLQRLDYLSSLSYSAHTSEMWDEELALECELDYLNQLDK
Ga0211577_104245401	3300020469	Marine	MTITQKLQRLDYLSSLPYLDHTSEDWDEELKLECE
Ga0211547_101494351	3300020474	Marine	VDSMNDTQKLQRLAYLASLPYLDHTSEDWDEELRLECELDHL
Ga0211547_102344754	3300020474	Marine	MSIQEKLKRLDYLSSLPYLDHTSEDWDEELRLECELDHL
Ga0211541_101031054	3300020475	Marine	MTDTQKLQRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLDK
Ga0224902_1009626	3300022066	Seawater	MPDTQKLKRLDYLSSLPYLDHTPEDWDEELRLECELQDVDQ
Ga0224902_1012345	3300022066	Seawater	MTITQKLKRLDYLSSLPYLDHTSEDWDEELRLECELQDLDQ
Ga0224902_1019643	3300022066	Seawater	MNDIQKLKRLAYLASLPYSAHTPEMWDEELALECELDHLNQLDK
Ga0224902_1039382	3300022066	Seawater	MTITQKLKRLDYLSSLPYLAHTPEDWDEELRLECELQDVDQ
Ga0224906_100015842	3300022074	Seawater	MNYTQKLKRLDYLSSLPYLDHTSEDWDEELRLECELQDSDQ
Ga0224906_10244163	3300022074	Seawater	MSIQEKLQRLDFLSSLPYLDHTSEDWDEELRLECELDHLNQLDQ
Ga0224906_10253983	3300022074	Seawater	MTDTQKLQRLDFLSSLPYSAHTPEMWDEELRLECELDHLNQLDQ
Ga0224906_10278395	3300022074	Seawater	MSIQEKLQRLDFLSSLPYSAHTPEMWDEELKLECELDHLNQLDK
Ga0224906_10468273	3300022074	Seawater	MSIQEKLQRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLDK
Ga0224906_11388242	3300022074	Seawater	MTITQKLKRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLDQ
Ga0208157_100492813	3300025086	Marine	MSIQEKLQRLDYLSSLPYLDHTPKDWDEELRLECELDHLNQLDQ
Ga0208157_10132434	3300025086	Marine	MNYTQKLQRLDFLSSLPYLDHTSEDWDEQLRLECELDHLNQLDQ
Ga0208157_10803193	3300025086	Marine	MPDTQKLQRLDFLSSLPYSAHTSEMWDEELRLECELDHLNQLDK
Ga0208159_10562841	3300025101	Marine	MTDTQKLERLDFLSSLSYSAHTTEDWEEELRLECEL
Ga0209348_100050624	3300025127	Marine	MTDTQKLQRLAYLASLPYLDHTPEDWDEELRLECELQDLDQ
Ga0209232_10406393	3300025132	Marine	MPDTQKLKRLDYLSSLPYLDHTSEDWDEELRLECELQDSDQ
Ga0209232_11478001	3300025132	Marine	MQMTDTQKLKRLAYLASLPYLDHTPEDWDEELRLECELQDLDQ
Ga0209232_11816721	3300025132	Marine	MTITQKLKRLDYLSSLPYSAHTPEMWDEELRLECELDHLNQLDK
Ga0209232_12159172	3300025132	Marine	MTDTQKLERLAYLASLPYLDHTPEDWDEELRLECELQDLDQ
Ga0209645_10633594	3300025151	Marine	MTDTQKLKRLDYLSSLSYLDHTPEDWDEELRLECELQDSDQ
Ga0209645_10756654	3300025151	Marine	MTDIQKLKRLAYLASLPYLDHTSEDWDEELRLECELQDSDQ
Ga0209503_100205915	3300027859	Marine	MDIIQKLRRLDFLSSLPYLDHTSEDWDEELRLECELDHLNQLDQ
Ga0183757_10312942	3300029787	Marine	MPDTQKLQRLDFLSSLPYLDHTSEDWDEELRLECELDHLNQLDQ
Ga0183757_10351754	3300029787	Marine	MSIQEKLQRLDYLSSLPYLDHTPEDWDEELRLECELDHLNQLNK
Ga0183757_10544662	3300029787	Marine	MSIQEKLQRLDYLSSLPYLDHTSKDWDEELRLECELDHLNQLDK
Ga0183757_10570262	3300029787	Marine	MTIQEKLQRLDYLSSLPYLDHTSKDWDEELKLECELDHLNQLDQ
Ga0315331_103241223	3300031774	Seawater	MTIQEKLQRLDYLSSLPYSAHTPEMWDEELRLECELDHLNQLDK
Ga0310343_106952302	3300031785	Seawater	MTDTQKLERLAYLANLPYNSHTPEDWDEELRLECELQDLDQ
Ga0315316_100639622	3300032011	Seawater	MTITQKLQRLDFLSSLPYLDHTPEDWDEELRLECELQDSDQ
Ga0315330_107464041	3300032047	Seawater	TQKLKRLDYLSSLPYLDHTSDDWDEELRLECELDHLNQLDK
Ga0315315_117005271	3300032073	Seawater	NYTQKLKRLDYLSSLPYLDHTSEDWDEELRLECELDHLNQLDQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052544

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences