Metagenome / Metatranscriptome Family F052507

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F052507
Family Type	Metagenome / Metatranscriptome
Number of Sequences	142
Average Sequence Length	44 residues
Representative Sequence	MDMVTPPVVADLPTEVAAGMVERDGGLLDDDVTVAGTCFMIKTPL
Number of Associated Samples	117
Number of Associated Scaffolds	142

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.92 %
% of genes near scaffold ends (potentially truncated)	15.49 %
% of genes from short scaffolds (< 2000 bps)	80.28 %
Associated GOLD sequencing projects	109
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (92.254 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment (16.197 % of family members)
Environment Ontology (ENVO)	Unclassified (32.394 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (41.549 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 6.85% β-sheet: 2.74% Coil/Unstructured: 90.41%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 142 Family Scaffolds
PF04073	tRNA_edit	51.41
PF00582	Usp	7.04
PF01339	CheB_methylest	3.52
PF00970	FAD_binding_6	2.82
PF11154	DUF2934	1.41
PF02743	dCache_1	1.41
PF03098	An_peroxidase	1.41
PF05973	Gp49	0.70
PF03783	CsgG	0.70
PF13936	HTH_38	0.70
PF01618	MotA_ExbB	0.70
PF00813	FliP	0.70
PF04539	Sigma70_r3	0.70
PF01850	PIN	0.70
PF04134	DCC1-like	0.70
PF07992	Pyr_redox_2	0.70
PF03705	CheR_N	0.70
PF00571	CBS	0.70
PF01569	PAP2	0.70
PF00175	NAD_binding_1	0.70
PF13426	PAS_9	0.70
PF00196	GerE	0.70
PF02604	PhdYeFM_antitox	0.70
PF00072	Response_reg	0.70
PF01297	ZnuA	0.70

COG ID	Name	Functional Category	% Frequency in 142 Family Scaffolds
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	7.04
COG1352	Methylase of chemotaxis methyl-accepting proteins	Signal transduction mechanisms [T]	1.41
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	1.41
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.70
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.70
COG1462	Curli biogenesis system outer membrane secretion channel CsgG	Cell wall/membrane/envelope biogenesis [M]	0.70
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.70
COG3011	Predicted thiol-disulfide oxidoreductase YuxK, DCC family	General function prediction only [R]	0.70
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	0.70
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.70
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.25 %
Unclassified	root	N/A	7.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.25 %
Unclassified	root	N/A	7.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.25 %
Unclassified	root	N/A	7.75 %

Name	Rank	Taxonomy	Distribution
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	70.42 %
Unclassified	root	N/A	7.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	21.83 %
Unclassified	root	N/A	7.75 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	4.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	21.83 %
Unclassified	root	N/A	7.75 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	4.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	21.83 %
Unclassified	root	N/A	7.75 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	4.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	20.42 %
Unclassified	root	N/A	7.75 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	4.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.75 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	5.63 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	4.23 %
Nitrospira defluvii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	3.52 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.75 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	5.63 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	4.23 %
Nitrospira defluvii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	3.52 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.70 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_11496146	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300004281\|Ga0066397_10122685	Not Available	568	Open in IMG/M
3300005167\|Ga0066672_10056395	All Organisms → cellular organisms → Bacteria	2274	Open in IMG/M
3300005176\|Ga0066679_10431920	All Organisms → cellular organisms → Bacteria → Nitrospirae	862	Open in IMG/M
3300005180\|Ga0066685_10376582	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	986	Open in IMG/M
3300005439\|Ga0070711_100784484	All Organisms → cellular organisms → Bacteria → Nitrospirae	807	Open in IMG/M
3300005445\|Ga0070708_100166253	All Organisms → cellular organisms → Bacteria → Nitrospirae	2058	Open in IMG/M
3300005451\|Ga0066681_10330987	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300005467\|Ga0070706_100445840	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300005468\|Ga0070707_100000008	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	179935	Open in IMG/M
3300005518\|Ga0070699_100172341	All Organisms → cellular organisms → Bacteria → Nitrospirae	1918	Open in IMG/M
3300005518\|Ga0070699_100343442	All Organisms → cellular organisms → Bacteria → Nitrospirae	1344	Open in IMG/M
3300005526\|Ga0073909_10116307	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300005526\|Ga0073909_10139249	All Organisms → cellular organisms → Bacteria → Proteobacteria	1001	Open in IMG/M
3300005546\|Ga0070696_100181040	All Organisms → cellular organisms → Bacteria	1564	Open in IMG/M
3300005552\|Ga0066701_10129769	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1501	Open in IMG/M
3300005554\|Ga0066661_10225692	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1161	Open in IMG/M
3300005561\|Ga0066699_10977411	All Organisms → cellular organisms → Bacteria → Nitrospirae	587	Open in IMG/M
3300005569\|Ga0066705_10044040	All Organisms → cellular organisms → Bacteria	2476	Open in IMG/M
3300005575\|Ga0066702_10143581	All Organisms → cellular organisms → Bacteria	1407	Open in IMG/M
3300005586\|Ga0066691_10892541	All Organisms → cellular organisms → Bacteria → Nitrospirae	523	Open in IMG/M
3300005827\|Ga0074478_1940460	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1027	Open in IMG/M
3300005829\|Ga0074479_10997205	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300005829\|Ga0074479_11002634	All Organisms → cellular organisms → Bacteria → Nitrospirae	551	Open in IMG/M
3300005829\|Ga0074479_11090344	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	6198	Open in IMG/M
3300005833\|Ga0074472_10468961	All Organisms → cellular organisms → Bacteria	1645	Open in IMG/M
3300005833\|Ga0074472_10874327	All Organisms → cellular organisms → Bacteria → Nitrospirae	2807	Open in IMG/M
3300006794\|Ga0066658_10157897	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300006844\|Ga0075428_101789785	Not Available	640	Open in IMG/M
3300006846\|Ga0075430_100086343	All Organisms → cellular organisms → Bacteria	2626	Open in IMG/M
3300007258\|Ga0099793_10366585	All Organisms → cellular organisms → Bacteria → Nitrospirae	705	Open in IMG/M
3300009012\|Ga0066710_101008376	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1285	Open in IMG/M
3300009012\|Ga0066710_103935093	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	556	Open in IMG/M
3300009088\|Ga0099830_11542169	All Organisms → cellular organisms → Bacteria → Nitrospirae	553	Open in IMG/M
3300009100\|Ga0075418_12295820	All Organisms → cellular organisms → Bacteria → Nitrospirae	589	Open in IMG/M
3300009157\|Ga0105092_10167744	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300009527\|Ga0114942_1255086	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300009777\|Ga0105164_10026651	All Organisms → cellular organisms → Bacteria	3217	Open in IMG/M
3300010047\|Ga0126382_10626201	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300010391\|Ga0136847_11355232	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1322	Open in IMG/M
3300010391\|Ga0136847_12148156	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	688	Open in IMG/M
3300011397\|Ga0137444_1007748	All Organisms → cellular organisms → Bacteria → Nitrospirae	1359	Open in IMG/M
3300011414\|Ga0137442_1084291	All Organisms → cellular organisms → Bacteria → Nitrospirae	681	Open in IMG/M
3300011419\|Ga0137446_1004238	All Organisms → cellular organisms → Bacteria	2416	Open in IMG/M
3300011424\|Ga0137439_1097398	All Organisms → cellular organisms → Bacteria → Nitrospirae	642	Open in IMG/M
3300011437\|Ga0137429_1193396	All Organisms → cellular organisms → Bacteria → Nitrospirae	636	Open in IMG/M
3300011443\|Ga0137457_1057255	All Organisms → cellular organisms → Bacteria → Nitrospirae	1156	Open in IMG/M
3300011444\|Ga0137463_1206379	All Organisms → cellular organisms → Bacteria → Nitrospirae	736	Open in IMG/M
3300012146\|Ga0137322_1009883	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1206	Open in IMG/M
3300012152\|Ga0137347_1090557	All Organisms → cellular organisms → Bacteria → Nitrospirae	545	Open in IMG/M
3300012160\|Ga0137349_1039977	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	802	Open in IMG/M
3300012203\|Ga0137399_10046416	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	3124	Open in IMG/M
3300012225\|Ga0137434_1075150	All Organisms → cellular organisms → Bacteria → Nitrospirae	537	Open in IMG/M
3300012226\|Ga0137447_1084406	Not Available	619	Open in IMG/M
3300012232\|Ga0137435_1114596	Not Available	815	Open in IMG/M
3300012685\|Ga0137397_10136129	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	1815	Open in IMG/M
3300012922\|Ga0137394_10258886	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	1488	Open in IMG/M
3300012925\|Ga0137419_10021471	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	3781	Open in IMG/M
3300012944\|Ga0137410_11131909	All Organisms → cellular organisms → Bacteria → Nitrospirae	671	Open in IMG/M
3300014873\|Ga0180066_1027602	All Organisms → cellular organisms → Bacteria → Nitrospirae	1068	Open in IMG/M
3300014883\|Ga0180086_1142537	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	624	Open in IMG/M
3300015241\|Ga0137418_10995392	All Organisms → cellular organisms → Bacteria → Nitrospirae	607	Open in IMG/M
3300015252\|Ga0180075_1030596	All Organisms → cellular organisms → Bacteria → Nitrospirae	821	Open in IMG/M
3300015256\|Ga0180073_1097406	All Organisms → cellular organisms → Bacteria → Nitrospirae	633	Open in IMG/M
3300018031\|Ga0184634_10039908	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1900	Open in IMG/M
3300018031\|Ga0184634_10483341	All Organisms → cellular organisms → Bacteria → Nitrospirae	555	Open in IMG/M
3300018052\|Ga0184638_1001778	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	6519	Open in IMG/M
3300018053\|Ga0184626_10006456	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	4487	Open in IMG/M
3300018055\|Ga0184616_10168555	All Organisms → cellular organisms → Bacteria → Nitrospirae	815	Open in IMG/M
3300018056\|Ga0184623_10207498	All Organisms → cellular organisms → Bacteria → Nitrospirae	900	Open in IMG/M
3300018056\|Ga0184623_10385212	All Organisms → cellular organisms → Bacteria → Nitrospirae	621	Open in IMG/M
3300018059\|Ga0184615_10106846	All Organisms → cellular organisms → Bacteria → Nitrospirae	1576	Open in IMG/M
3300018063\|Ga0184637_10630686	Not Available	599	Open in IMG/M
3300018063\|Ga0184637_10649146	All Organisms → cellular organisms → Bacteria → Nitrospirae	586	Open in IMG/M
3300018063\|Ga0184637_10683511	Not Available	564	Open in IMG/M
3300018071\|Ga0184618_10008011	All Organisms → cellular organisms → Bacteria	3083	Open in IMG/M
3300018074\|Ga0184640_10423623	Not Available	596	Open in IMG/M
3300018075\|Ga0184632_10010270	All Organisms → cellular organisms → Bacteria	3924	Open in IMG/M
3300018077\|Ga0184633_10007905	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	4998	Open in IMG/M
3300018078\|Ga0184612_10273000	All Organisms → cellular organisms → Bacteria → Nitrospirae	871	Open in IMG/M
3300018078\|Ga0184612_10479129	Not Available	613	Open in IMG/M
3300018079\|Ga0184627_10429084	Not Available	687	Open in IMG/M
3300018082\|Ga0184639_10210949	All Organisms → cellular organisms → Bacteria → Nitrospirae	1030	Open in IMG/M
3300018084\|Ga0184629_10058982	All Organisms → cellular organisms → Bacteria → Nitrospirae	1778	Open in IMG/M
3300018084\|Ga0184629_10169559	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300018084\|Ga0184629_10320974	All Organisms → cellular organisms → Bacteria → Nitrospirae	815	Open in IMG/M
3300018084\|Ga0184629_10360445	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	765	Open in IMG/M
3300018469\|Ga0190270_11501059	All Organisms → cellular organisms → Bacteria → Nitrospirae	723	Open in IMG/M
3300019249\|Ga0184648_1285575	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300019249\|Ga0184648_1493651	All Organisms → cellular organisms → Bacteria → Nitrospirae	576	Open in IMG/M
3300019259\|Ga0184646_1519050	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1325	Open in IMG/M
3300019360\|Ga0187894_10002968	All Organisms → cellular organisms → Bacteria	19537	Open in IMG/M
3300019487\|Ga0187893_10106436	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	2445	Open in IMG/M
3300019866\|Ga0193756_1026153	All Organisms → cellular organisms → Bacteria → Nitrospirae	819	Open in IMG/M
3300019883\|Ga0193725_1149716	All Organisms → cellular organisms → Bacteria → Nitrospirae	504	Open in IMG/M
3300019997\|Ga0193711_1030735	All Organisms → cellular organisms → Bacteria → Nitrospirae	672	Open in IMG/M
3300020004\|Ga0193755_1013439	All Organisms → cellular organisms → Bacteria	2690	Open in IMG/M
3300020004\|Ga0193755_1032990	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1711	Open in IMG/M
3300020059\|Ga0193745_1003876	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	3140	Open in IMG/M
3300020065\|Ga0180113_1299688	All Organisms → cellular organisms → Bacteria → Nitrospirae	787	Open in IMG/M
3300021073\|Ga0210378_10025067	All Organisms → cellular organisms → Bacteria	2395	Open in IMG/M
3300021081\|Ga0210379_10064143	All Organisms → cellular organisms → Bacteria	1486	Open in IMG/M
3300021090\|Ga0210377_10168660	All Organisms → cellular organisms → Bacteria → Nitrospirae	1416	Open in IMG/M
3300021090\|Ga0210377_10212042	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1228	Open in IMG/M
3300022534\|Ga0224452_1139158	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300022694\|Ga0222623_10225942	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300025325\|Ga0209341_11059713	All Organisms → cellular organisms → Bacteria → Nitrospirae	589	Open in IMG/M
3300025906\|Ga0207699_10948997	All Organisms → cellular organisms → Bacteria → Nitrospirae	635	Open in IMG/M
3300025910\|Ga0207684_10074994	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	2874	Open in IMG/M
3300025910\|Ga0207684_10240164	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1563	Open in IMG/M
3300025916\|Ga0207663_10846028	Not Available	730	Open in IMG/M
3300025922\|Ga0207646_10000010	All Organisms → cellular organisms → Bacteria	421163	Open in IMG/M
3300025922\|Ga0207646_10184963	All Organisms → cellular organisms → Bacteria → Nitrospirae	1882	Open in IMG/M
3300026530\|Ga0209807_1159010	All Organisms → cellular organisms → Bacteria → Nitrospirae	851	Open in IMG/M
3300026542\|Ga0209805_1453336	Not Available	501	Open in IMG/M
3300026548\|Ga0209161_10384930	All Organisms → cellular organisms → Bacteria → Nitrospirae	619	Open in IMG/M
3300027643\|Ga0209076_1201203	All Organisms → cellular organisms → Bacteria → Nitrospirae	546	Open in IMG/M
3300027722\|Ga0209819_10110196	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	961	Open in IMG/M
3300028536\|Ga0137415_10003357	All Organisms → cellular organisms → Bacteria	15902	Open in IMG/M
3300028803\|Ga0307281_10055622	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1254	Open in IMG/M
3300028803\|Ga0307281_10439994	All Organisms → cellular organisms → Bacteria → Nitrospirae	503	Open in IMG/M
3300031576\|Ga0247727_10014784	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	12908	Open in IMG/M
3300031576\|Ga0247727_10020763	All Organisms → cellular organisms → Bacteria → Nitrospirae	9997	Open in IMG/M
3300031576\|Ga0247727_10517485	All Organisms → cellular organisms → Bacteria → Nitrospirae	921	Open in IMG/M
3300031720\|Ga0307469_12106266	All Organisms → cellular organisms → Bacteria → Nitrospirae	548	Open in IMG/M
3300031820\|Ga0307473_10052478	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1941	Open in IMG/M
3300031820\|Ga0307473_10400678	All Organisms → cellular organisms → Bacteria → Nitrospirae	899	Open in IMG/M
3300031873\|Ga0315297_10624447	All Organisms → cellular organisms → Bacteria → Nitrospirae	904	Open in IMG/M
3300031997\|Ga0315278_10018111	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	6635	Open in IMG/M
3300032163\|Ga0315281_11709129	All Organisms → cellular organisms → Bacteria → Nitrospirae	610	Open in IMG/M
3300032164\|Ga0315283_10997423	All Organisms → cellular organisms → Bacteria → Nitrospirae	886	Open in IMG/M
3300032180\|Ga0307471_100442809	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1437	Open in IMG/M
3300032256\|Ga0315271_10930681	All Organisms → cellular organisms → Bacteria → Nitrospirae	750	Open in IMG/M
3300033811\|Ga0364924_041197	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	968	Open in IMG/M
3300033811\|Ga0364924_132483	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300034115\|Ga0364945_0038948	All Organisms → cellular organisms → Bacteria → Nitrospirae	1302	Open in IMG/M
3300034155\|Ga0370498_010916	All Organisms → cellular organisms → Bacteria → Nitrospirae	1891	Open in IMG/M
3300034178\|Ga0364934_0010436	All Organisms → cellular organisms → Bacteria → Nitrospirae	3273	Open in IMG/M
3300034354\|Ga0364943_0025986	All Organisms → cellular organisms → Bacteria → Nitrospirae	1840	Open in IMG/M
3300034417\|Ga0364941_062263	All Organisms → cellular organisms → Bacteria → Nitrospirae	854	Open in IMG/M
3300034690\|Ga0364923_0014163	All Organisms → cellular organisms → Bacteria → Nitrospirae	1759	Open in IMG/M
3300034773\|Ga0364936_009735	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1510	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.89%
Host-Associated	Host-Associated	2.11%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.70%
Aquatic	Environmental → Aquatic	47.18%
Plants	Host-Associated → Plants	2.11%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	41.55%
Sediment	Environmental → Aquatic → Sediment	33.80%
Freshwater	Environmental → Aquatic → Freshwater	13.38%
Floodplain	Environmental → Terrestrial → Floodplain	5.63%
Cave	Environmental → Terrestrial → Cave	3.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.11%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified	33.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.28%
Loam	Environmental → Terrestrial → Soil → Loam	10.56%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.04%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	5.63%
Lake	Environmental → Aquatic → Freshwater → Lake	4.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	3.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.11%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	0.70%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.70%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	33.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.49%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.15%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.04%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	5.63%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	3.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.11%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	0.70%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.70%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	16.20%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	11.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.15%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.34%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	5.63%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	5.63%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	4.23%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.52%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.82%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	2.11%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.11%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.41%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	1.41%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.41%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.41%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.41%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	1.41%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	0.70%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.70%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.70%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005827	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.188_CBA	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009527	Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Lower Cold Creek	Environmental	Open in IMG/M
3300009777	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300011397	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT319_2	Environmental	Open in IMG/M
3300011414	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2	Environmental	Open in IMG/M
3300011419	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2	Environmental	Open in IMG/M
3300011424	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT200_2	Environmental	Open in IMG/M
3300011437	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012146	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT400_2	Environmental	Open in IMG/M
3300012152	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT590_2	Environmental	Open in IMG/M
3300012160	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT630_2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012225	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT860_2	Environmental	Open in IMG/M
3300012226	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014873	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200B_16_10D	Environmental	Open in IMG/M
3300014883	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015252	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT399_16_10D	Environmental	Open in IMG/M
3300015256	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT333_16_10D	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019997	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034155	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M
3300034773	Sediment microbial communities from East River floodplain, Colorado, United States - 4_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_114961462	3300000891	Soil	MMTPPVMASLPAEAAAGMIEGDGGVLDNDATAVGAYFMIKAPL*
Ga0066397_101226851	3300004281	Tropical Forest Soil	SLSAREMDMEIPPGATDLPTEVACGWFEEGGGLLANDVNVVGICFMIKTLR*
Ga0066672_100563952	3300005167	Soil	MAIPPVVADLPTEVASGWIEQEGVLLDDDVIVVGICFMIKTSL*
Ga0066679_104319202	3300005176	Soil	MAIPPVVADLPTEFASGWIEKDGLLLDDDVIVVGICFMIKTQL*
Ga0066685_103765821	3300005180	Soil	MDMAIPPVVADLPTEVASGWIEKDGLLLDDDVIVVGICFMIKTQL*
Ga0070711_1007844842	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MVTPPLVIDLPTEIISGVVEGDGGLLDDDLTVAGTCFMIKTPL*
Ga0070708_1001662534	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MVTPPVVADIRQRPAAGTVERNGGLPDDDVTVARTCFMIKAPL*
Ga0066681_103309872	3300005451	Soil	MDMAIPPVVADLPTEVASGWIEQEGVLLDDDVIVVGICFMIKTSL*
Ga0070706_1004458401	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MDMVTPPVVADIRQRPAAGTVERNGGLPDDDVTVARTCFMIKAPL*
Ga0070707_100000008159	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MDMVTPPLVIDLPTEIISGVVERDGGLLDDDLTVAGTCFMIKTPL*
Ga0070699_1001723415	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MVTPPLVIDLPTEIISGVVERDGGLLDDDLTVAGTCFMIKTPL*
Ga0070699_1003434421	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	NEFSVREMDMVTPPVVADLPTEVGCWNGERDGELLDDDLIVAGTCFMIKVPL*
Ga0073909_101163071	3300005526	Surface Soil	MDMVTPPVVADLPTEVAAGTVERDGGLLDDDVTVEGCFMIKTPL*
Ga0073909_101392492	3300005526	Surface Soil	MPPVVADLPMEVASGWVENDGVLLDDDVTVVGMCFMIKTLL*
Ga0070696_1001810404	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MPPVVADLPVEVASGWVENDEVLLDDNVTVVGMCLMIKTLL*
Ga0066701_101297693	3300005552	Soil	MAIPPVVADLPTEVASGWIEKDGVLLDDDVIVVGICFMIKTQL*
Ga0066661_102256921	3300005554	Soil	MAIPPVVADLPTEVASGWIEKDGLLLDDDVIVVGICFMI
Ga0066699_109774112	3300005561	Soil	MAIPPVVADLPTEVASGWIEKDGLLLDDDVIVVGICFMIKTQL*
Ga0066705_100440403	3300005569	Soil	VREMDMAIPPVVADLPTEVASGWIEKDGLLLDDDVIVVGICFMIKTQL*
Ga0066702_101435812	3300005575	Soil	MAISPVVADLPTEVASGWIEQEGVLLDDDVIVVGICFMIKTQL*
Ga0066691_108925411	3300005586	Soil	MDMAIPPLVADLPTEFASGWIEKDGLLLDDDVIVVGICFMIKTQL*
Ga0074478_19404603	3300005827	Sediment (Intertidal)	CSRSRYSLSVCEMEMAKPPMVADLQTEVASGWIEKRGGLFDEDVMVTGMCFVIKTLL*
Ga0074479_109972054	3300005829	Sediment (Intertidal)	MDMVTPPVVDWFPAEVCDGMIEGDGGLFDDDKTMEGTCFMTKAPLRS*
Ga0074479_110026342	3300005829	Sediment (Intertidal)	MDMVTPPVVADLPTEVAAGMVKGDAGLLDDDVTVAGTCSMIKTLL*
Ga0074479_110903443	3300005829	Sediment (Intertidal)	MEMAKPPMVADLQTEVASGWIEKRGGLFDEDVMVTGMCFVIKTLL*
Ga0074472_104689614	3300005833	Sediment (Intertidal)	VVADIPAEVAAGMVEWDGKLLDNDVTVEGAYFMIKIPL*
Ga0074472_108743271	3300005833	Sediment (Intertidal)	MEMAKPPMVADLQTEVASGWIEKRGGLFDKDVMVTGMCFVIKTLL*
Ga0066658_101578972	3300006794	Soil	MAIPPVVADLPTEVASGWVEKDGVLLDDDVIVVGICFMIKTQL*
Ga0075428_1017897853	3300006844	Populus Rhizosphere	MDMEIPPGATDLPTEVACGWTEESGGLLADDVNVVGICFMIKTLR*
Ga0075430_1000863433	3300006846	Populus Rhizosphere	MDMAAPPVVADLLTGVASEVAGRDRGPLDDDVTVVGKCSMIKALR*
Ga0099793_103665851	3300007258	Vadose Zone Soil	MDMVTPPMVADLPAEVAAGMVERDGGLLDNDVTVAGTCFMIKAPL*
Ga0066710_1010083762	3300009012	Grasslands Soil	MAIPPVVADLPTEVASGWIEKDGVLLDDEVIVVGICFMIKTQL
Ga0066710_1039350932	3300009012	Grasslands Soil	DLPTEVASGWIEKDGVLLDDDVIVVGICFMIKTQL
Ga0099830_115421691	3300009088	Vadose Zone Soil	MAIPPVVADLPTEVTSGWIEKDRGLLDDGVTVVGTRFMIKTPL*
Ga0075418_122958202	3300009100	Populus Rhizosphere	MEIPPGATDLPTEVACGWIEEGGGLLADDVNVVGICFMIK
Ga0105092_101677441	3300009157	Freshwater Sediment	MDMVTPPVVADLPTEVAAGMVERDGRLLDDDVTVVGTYFMIKTPL*
Ga0114942_12550862	3300009527	Groundwater	MDMVTPPVVDWFPAEVCDGMIEGDGGLFDDDKTMKGTCFMTKAPLRS*
Ga0105164_100266513	3300009777	Wastewater	MDTVAPPVVADLPTEVAAGMAERGGGLLEDDVTVAGTCFMIKTPL*
Ga0126382_106262012	3300010047	Tropical Forest Soil	MEIPPGATDLPTEVACGWIEEGGGLLANDVNVVGICFMIKTLR*
Ga0136847_113552322	3300010391	Freshwater Sediment	MVAPPVVADLPAEVAAGMVERGEGLFVDDVTVVGTCFMIKAPL*
Ga0136847_121481562	3300010391	Freshwater Sediment	MDIVTPPVVADLPTEVAAGMVERDGGLLDDDVTVAGTCFMIKAPL*
Ga0137444_10077482	3300011397	Soil	MDMVTPPVVADLPTEVAAGMVERDEGLLDDDVTVAGTCFMIKTPL*
Ga0137442_10842911	3300011414	Soil	MDMVTPPVVADLPTEVAAGMVERDGGLLDDDVTVAGTCFMIKAPL*
Ga0137446_10042383	3300011419	Soil	MDMVTPPVVADLPTEVAAGMVEREEGLLDDDVTVAGTCFMIKTPL*
Ga0137439_10973981	3300011424	Soil	MDMVTPPMVADLPTEVAAGMVERDGRLLDDDVTVAGTCFMIKAPL*
Ga0137429_11933961	3300011437	Soil	MVTPPVVADLPAEVAAGMVERDGGLLDDDVTVVGNASHDQ
Ga0137457_10572552	3300011443	Soil	MDMVTPPVVADLPTEVAAGMVERDEGLLDDDMTVAGTCFMIKAPL*
Ga0137463_12063793	3300011444	Soil	MAIPPVVADLPMEVASGWVLNDGVLLDDDVPVVGMCFMIETLL*
Ga0137322_10098831	3300012146	Soil	MGMVTPPVVADLPTEVAAGMVERDEGLLDDDVTVAGTCFMIKTPL*
Ga0137347_10905572	3300012152	Soil	MDMVTPPVVADLPTEVAAGMVERDGGLLDDDVTVAGTCFMIKTPL*
Ga0137349_10399772	3300012160	Soil	MDMVTPPVVADLPTEVAAGMVERDEGLLDDDMTVAGTCFMIKTPL*
Ga0137399_100464162	3300012203	Vadose Zone Soil	MDMVIPPMVADLPAEVAAGMVERDGGLLDNDVTVAGTCFMIKVPL*
Ga0137434_10751502	3300012225	Soil	MDMVTPPVVADLPTEVAAGMVERDEGLLDDDVTVAGTCFMIKAPL*
Ga0137447_10844061	3300012226	Soil	IVTPPVVADLPTEVAAGMVERDGGLLDDDVTVAGTCFMIKAPL*
Ga0137435_11145962	3300012232	Soil	MDMVTPPMVADLPTEVAAGMVERDEGLLDDDVTVAGTCFMIKTPL*
Ga0137397_101361293	3300012685	Vadose Zone Soil	MGMVTPPMVADLPAEVAAGMVEREGGLLDNDVTAAGTCFMIKTPL*
Ga0137394_102588863	3300012922	Vadose Zone Soil	MGMVTPPMVADLPAEVAAGMVERDGGLLDNDVTVAGTCFMIKAPL*
Ga0137419_100214712	3300012925	Vadose Zone Soil	MDMVTPPMVADLPAEVAAGMVEKDGGLLDNDVTVAGTCFMIKVPL*
Ga0137410_111319091	3300012944	Vadose Zone Soil	VADLPAEVAAGMVERDGGLLDNDVTVAGTCFMIKAPL*
Ga0180066_10276022	3300014873	Soil	MDMVTPPVVADLPTEVAAGMVERDGRLFDDDVTVAGTCFMVKAPL*
Ga0180086_11425372	3300014883	Soil	TPPVVADLPTEVAAGMVERDGGLLDNDVIVAGTYFMIMAPL*
Ga0137418_109953921	3300015241	Vadose Zone Soil	MDMAIPPVVADLPTEVASGWIEQEGILVDDDVIVVGICFMIKTQL*
Ga0180075_10305961	3300015252	Soil	MDMVTPPVVADLPTEVAAGMVERDGGLLDNDVTVAGTCFMIKTPL*
Ga0180073_10974061	3300015256	Soil	MDMVTPPVVADLSTEVAAGMVERDGGLLDDDVTVAGTCFMIKAPL*
Ga0184634_100399082	3300018031	Groundwater Sediment	MVAPPVVADLPAEVAAGMVERGEGLFVDDVTVVGTCFMIKAPL
Ga0184634_104833412	3300018031	Groundwater Sediment	MDMVTPPVVADLPTEVAAGMVERDEGLLDDDVTVAGTCFMIK
Ga0184638_10017786	3300018052	Groundwater Sediment	MDMVTPPVVADLTTEVAAGMVERDGGLLDDDVTAAGTCFMIKTPL
Ga0184626_100064562	3300018053	Groundwater Sediment	MDMVTPPVVADLPTEVAAGMVERDGGLLDDDVTAAGTCFMIKTPL
Ga0184616_101685553	3300018055	Groundwater Sediment	MDMVTPPVVADLPTEVAAGMVERDEGLLDDDVTVAGTCFMIKTPL
Ga0184623_102074982	3300018056	Groundwater Sediment	MDMVTPPMVADLPTEVAAGMVERDGGLLDDDVTVAGTCFMIKAPL
Ga0184623_103852122	3300018056	Groundwater Sediment	MAIPPVVADLPTEVASGWIARDGVLLDDDVTVVGMCFMIKTLL
Ga0184615_101068461	3300018059	Groundwater Sediment	MDMVTPPVVADLPTEVAAGTVERDGELLDDDVTAAGCFMIKTPL
Ga0184637_106306861	3300018063	Groundwater Sediment	MDMVTPPVVADLPTEIAAGMVERDEGMLDDDVTVAGTCFMIKAPL
Ga0184637_106491462	3300018063	Groundwater Sediment	MDMVTPPMVADLPTEVAAGMVEKDGGLLDDDVIVAGTCFMIKVPL
Ga0184637_106835111	3300018063	Groundwater Sediment	SRYALSVREMDMVTPPVVADLPTEVAAGMVERDEGLLDDDVTVAGTCFMIKAPL
Ga0184618_100080113	3300018071	Groundwater Sediment	MDMVTPPVVADLSTEVAAGMVERDGGLLDDDVTVAGTCFMIKAPL
Ga0184640_104236231	3300018074	Groundwater Sediment	MDMVAPPVVADLPAEVAAGMVERGEGLFVDDVTVVGTCFMIKAPL
Ga0184632_100102704	3300018075	Groundwater Sediment	MAIPPVVADLPTEVASGWIARDAVLLDDDVTVVGMCFMIKTPL
Ga0184633_100079054	3300018077	Groundwater Sediment	MDMVTPPVVADLTTEVAARMVEGDGGLLENDVTVAGTCFMIKTPL
Ga0184612_102730001	3300018078	Groundwater Sediment	MDMVTPPVVADLPTEIAAGMVERGRGLLDDDVTVAGTCFMIKAPR
Ga0184612_104791292	3300018078	Groundwater Sediment	PPVVADLPTEVAAGMVERDGRLLDDDVIVAGTCFMIKAPL
Ga0184627_104290841	3300018079	Groundwater Sediment	ADLPTEVAAGMVERDEGLLDDDVTVAGTCFMIKAPL
Ga0184639_102109492	3300018082	Groundwater Sediment	MDMVTPPVVADLSTEVAAGMVERDGGLLDDDVTVAGTCFMIKTPL
Ga0184629_100589821	3300018084	Groundwater Sediment	MDMVTPPMVADLPTEVAVGMVEKDGGLLDDDVIEAGTCFMIKVPL
Ga0184629_101695592	3300018084	Groundwater Sediment	MDMVTPPMVADLPTEVAARMVERDGRLLDDDVTVAGTYFMIKTPL
Ga0184629_103209741	3300018084	Groundwater Sediment	MAMPPVVADLPLKVASGWVENDGVLLDDDVTVVGMCFMIKTPR
Ga0184629_103604451	3300018084	Groundwater Sediment	MDMVTPPVVADLPTEVVAGMVERDEGLLDDDVTVAGTCFMIKTPL
Ga0190270_115010591	3300018469	Soil	MDMVTPPVVADLPTEVAAGMVEREGRLLDDDVTVVGTYFMIKTPL
Ga0184648_12855751	3300019249	Groundwater Sediment	MDMVTPPMVADLPTEVAVGMVGKDGGLLDDDVIEAGTCFMIKIPL
Ga0184648_14936511	3300019249	Groundwater Sediment	MDMVTPPVVADLPTEVAAGMVERDGGLLDDDVTVAGTCFMIKAPL
Ga0184646_15190501	3300019259	Groundwater Sediment	MDMVTPPMVADLPTEVAAGMVERDGGLLDDDVTVAGTYFMIMTPL
Ga0187894_1000296817	3300019360	Microbial Mat On Rocks	MDMVTPPVVADLPAEVAAGMVERGGGMLDDDVTVGGVRVS
Ga0187893_101064361	3300019487	Microbial Mat On Rocks	MDMVTPPMVADLPAEVAAGMVERDGGLFDNDVTVAGTCFMIKAPL
Ga0193756_10261533	3300019866	Soil	MDMVTPPVVADLPAEVAAGMVERDGGLLDNDVTVAGTCFMIKAPL
Ga0193725_11497162	3300019883	Soil	MPPVVADLPMEVASGWVENDGVLLDDDVTVVGMCFMIKTL
Ga0193711_10307351	3300019997	Soil	MPPVVADLPMEVASGWVENDGVLLDDDVTVVGMCFMIKTLL
Ga0193755_10134392	3300020004	Soil	MPPVVADLPMEVASGWVENDGVLLDDDVTVVGMCFMIKTPL
Ga0193755_10329904	3300020004	Soil	MVTPPVMADLPTEVAAGTVERDGGLLDDDVTGRGVS
Ga0193745_10038765	3300020059	Soil	MPPVVADLPMEVASGWVENDGVLLDDDVTVVGMCFMIEILL
Ga0180113_12996882	3300020065	Groundwater Sediment	MDMVTPPVVADLPTEVASGMVERDRRLLDDDVTVVGTYFMIKTPL
Ga0210378_100250675	3300021073	Groundwater Sediment	MAIPPVVADLPTEVASGWIARDGVLLDDDVTVVGMCFMIKTPL
Ga0210379_100641432	3300021081	Groundwater Sediment	MAIPPVVADLPTEVASGWIEKDGVLLDDDVTVVGMCFMIKTPR
Ga0210377_101686604	3300021090	Groundwater Sediment	MDMVTPPVVADLPTEVAAGMVERDGELLDDDVTAAGCFMIKTPL
Ga0210377_102120424	3300021090	Groundwater Sediment	MAIPPVVADLPTEVASGWIEKDGVLLDDDVTVVGMCFMIKTPL
Ga0224452_11391581	3300022534	Groundwater Sediment	PPVVADLPTEVASGWIARDGVLLDDDVTVVGMCFMIKTPL
Ga0222623_102259421	3300022694	Groundwater Sediment	MDMAIPPVVADLPTEVASGWIARDGVLLDDDVTVVGMCFMIKTPL
Ga0209341_110597132	3300025325	Soil	MDMVTPPVVADLSTEVAAGMVERDGGLLDNDVTVAGTCFMIKAPL
Ga0207699_109489972	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MVTPPLVIDLPTEIISGVVEGDGGLLDDDLTVAGTCFMIKTSL
Ga0207684_100749941	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDMVTPPVVADIRQRPAAGTVERNGGLPDDDVTVARTCFMIKAPL
Ga0207684_102401642	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDMVTPPLVIDLPTEIISGVVERDGGLLDDDLTVAGTCFMIKTPL
Ga0207663_108460282	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VRAMDMVTPPLVIDLPTEIISGVVERDGGLLDDDLTVAGTCFMIKTPL
Ga0207646_1000001025	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MVTPPLVIDLPTEIISGVVERDGGLLDDDLTVAGTCFMIKTPL
Ga0207646_101849632	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MVTPPVVADIRQRPAAGTVERNGGLPDDDVTVARTCFMIKAPL
Ga0209807_11590102	3300026530	Soil	MDMAIPPVVADLPTEVASGWIEKDGLLLDDDVIVVGICFMIKTQL
Ga0209805_14533362	3300026542	Soil	VVADLPTEVASGWIEKDGLLLDDDVIVVGICFMIKTQL
Ga0209161_103849301	3300026548	Soil	MAIPPVVADLPTEVASGWVEKDGVLLDDDVIVVGICFMIKTQL
Ga0209076_12012031	3300027643	Vadose Zone Soil	MDMVTPPMVADLPAEVAAGMVERDGGLLDNDVTVAGTCFMIKAPL
Ga0209819_101101961	3300027722	Freshwater Sediment	MDMVTPPVVADLPTEVAAGMVERDGRLLDDDVTVVGTYFMIKTPL
Ga0137415_1000335719	3300028536	Vadose Zone Soil	MDMVIPPMVADLPAEVAAGMVERDGGLLDNDVTVAGTCFMIKVPL
Ga0307281_100556221	3300028803	Soil	MVTPPVVADLPTEVAAGTVERDGGLLDDDVTVAGCS
Ga0307281_104399942	3300028803	Soil	MDMVTPPMVADLPTEVAAGMVERDGRLLDDDVTVAGTYF
Ga0247727_100147845	3300031576	Biofilm	MDMVTPPVVADLTTEVAAGMVERDGGVLDVDVTVAGTCFMIKTPL
Ga0247727_1002076313	3300031576	Biofilm	MDTVAPPVVADLPTEVAAGMVERGGGLLDDDVTVRGTCFMIKSPL
Ga0247727_105174852	3300031576	Biofilm	MDMVTPPVVADLPTEVAAGMVERGGGLLDDDVTIAGTCFMIKTPL
Ga0307469_121062662	3300031720	Hardwood Forest Soil	DLPAEVAAGMVERDGGLLDNDVTVAGTCFMIKAPL
Ga0307473_100524783	3300031820	Hardwood Forest Soil	MDMVTPPVVADLPTEVAAGTVERDGGLLDDDVTVEGCFMIKTPL
Ga0307473_104006781	3300031820	Hardwood Forest Soil	MAVPPVVADLPLKVASGWVENDGVLLDDGVIVVGMCFMIKTLL
Ga0315297_106244471	3300031873	Sediment	MDMGTPPVVADLLTEVAAGMVERDGGLLDDDVTVAGTCFMIKTPL
Ga0315278_100181113	3300031997	Sediment	MDMGTPPVVADLLTEVAAGMVERDGGLLDDDVTVPGTCFMINTPL
Ga0315281_117091292	3300032163	Sediment	MDMVAPPVVADLPTEVASGMVERDGGLLDNDVTGAETCFMIKAPL
Ga0315283_109974233	3300032164	Sediment	MDMGTPPVVADLLTEVAAGMVERDGGLLDDDVTVPG
Ga0307471_1004428091	3300032180	Hardwood Forest Soil	MAMPPVVADLPMEVASGWAENDGVLLDDDVTVVGMCFMIKTPL
Ga0315271_109306812	3300032256	Sediment	MVAPPVVADLPTEVASGMVERDGGLLDNDVTGAETCFMIKAPL
Ga0364924_041197_732_869	3300033811	Sediment	MDMVTPPVVADLPTEVAAGMVEKDGGLLDDDVTVAGTYFMIKTPL
Ga0364924_132483_214_351	3300033811	Sediment	MDMVTPPMVADLPTEVAAGMVERDGRLLDDDVTVAGTCFMIKAPL
Ga0364945_0038948_2_136	3300034115	Sediment	MDMVTPPVVADLPTEVAAGMVERDEGLLDDDVNVAGTCFMIKAPL
Ga0370498_010916_957_1094	3300034155	Untreated Peat Soil	MDIVTPPVVADLPREVAAGMVERDGGLLDDDVTVAGTCFMIKAPL
Ga0364934_0010436_395_532	3300034178	Sediment	MDMVTPPVVADLPTEVAAGMVERDEGLLDDDVNVAGTCFMIKAPR
Ga0364943_0025986_1700_1837	3300034354	Sediment	MDMVTPPVVADLPTEVAIGMVERDGRLLDDDVTVVGTYFMIKTPL
Ga0364941_062263_668_805	3300034417	Sediment	MDMVTPPVVADLPTEVAAGMVERDEGLLDDDMTVAGTCFMIKAPL
Ga0364923_0014163_1587_1724	3300034690	Sediment	MDMVTPPVVADLPTEVAAGMVEKDGGLLDDDVTVAGTYFMIKAPL
Ga0364936_009735_99_236	3300034773	Sediment	MDMVTPPVVADLPTEVAAGMVERDGGLLDDDVTVAGTCFMIKTPL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052507

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences