Metagenome Family F052506

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F052506
Family Type	Metagenome
Number of Sequences	142
Average Sequence Length	42 residues
Representative Sequence	LQAARDEFGLSQIICWFDQGSMLPRAEVERAMRRFADEVMPKLR
Number of Associated Samples	114
Number of Associated Scaffolds	142

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.41 %
% of genes near scaffold ends (potentially truncated)	98.59 %
% of genes from short scaffolds (< 2000 bps)	86.62 %
Associated GOLD sequencing projects	109
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.070 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (15.493 % of family members)
Environment Ontology (ENVO)	Unclassified (21.127 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (38.028 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 142 Family Scaffolds
PF14595	Thioredoxin_9	16.20
PF07045	DUF1330	7.75
PF07995	GSDH	7.04
PF01436	NHL	5.63
PF05721	PhyH	4.93
PF10851	DUF2652	4.23
PF00857	Isochorismatase	4.23
PF13378	MR_MLE_C	3.52
PF06348	DUF1059	3.52
PF13432	TPR_16	3.52
PF13673	Acetyltransf_10	2.11
PF01425	Amidase	2.11
PF05685	Uma2	2.11
PF00296	Bac_luciferase	1.41
PF00085	Thioredoxin	1.41
PF02746	MR_MLE_N	1.41
PF03972	MmgE_PrpD	1.41
PF12773	DZR	1.41
PF13360	PQQ_2	1.41
PF01494	FAD_binding_3	1.41
PF08281	Sigma70_r4_2	1.41
PF00496	SBP_bac_5	1.41
PF03588	Leu_Phe_trans	1.41
PF13442	Cytochrome_CBB3	0.70
PF07883	Cupin_2	0.70
PF02779	Transket_pyr	0.70
PF13416	SBP_bac_8	0.70
PF01850	PIN	0.70
PF01740	STAS	0.70
PF00111	Fer2	0.70
PF10584	Proteasome_A_N	0.70
PF01229	Glyco_hydro_39	0.70
PF02615	Ldh_2	0.70
PF07992	Pyr_redox_2	0.70
PF13472	Lipase_GDSL_2	0.70
PF05598	DUF772	0.70
PF00107	ADH_zinc_N	0.70
PF00583	Acetyltransf_1	0.70

COG ID	Name	Functional Category	% Frequency in 142 Family Scaffolds
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	7.75
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	7.04
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	4.93
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	4.23
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	4.23
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	2.82
COG4948	L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	Cell wall/membrane/envelope biogenesis [M]	2.82
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	2.11
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	2.11
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	1.41
COG2360	Leu/Phe-tRNA-protein transferase	Posttranslational modification, protein turnover, chaperones [O]	1.41
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.41
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	1.41
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	1.41
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	1.41
COG3664	Beta-xylosidase	Carbohydrate transport and metabolism [G]	0.70
COG2055	Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family	Energy production and conversion [C]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.07 %
Unclassified	root	N/A	4.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.07 %
Unclassified	root	N/A	4.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.07 %
Unclassified	root	N/A	4.93 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	30.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.97 %
Unclassified	root	N/A	4.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.11 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.70 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	30.28 %
Unclassified	root	N/A	4.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.23 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.41 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.70 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.70 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	30.28 %
Unclassified	root	N/A	4.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.11 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.41 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.70 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.70 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.70 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	23.24 %
Unclassified	root	N/A	4.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.11 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.70 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.70 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.70 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	23.24 %
Unclassified	root	N/A	4.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.11 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.70 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.70 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.70 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17133186	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
2199352025\|deepsgr__Contig_48180	All Organisms → cellular organisms → Bacteria	2871	Open in IMG/M
3300000955\|JGI1027J12803_109519305	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300000956\|JGI10216J12902_100805689	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300000956\|JGI10216J12902_109560651	Not Available	502	Open in IMG/M
3300004052\|Ga0055490_10176039	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300004267\|Ga0066396_10098316	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300005166\|Ga0066674_10191404	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300005174\|Ga0066680_10371551	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	910	Open in IMG/M
3300005174\|Ga0066680_10757333	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300005177\|Ga0066690_11044989	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300005181\|Ga0066678_10802523	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	622	Open in IMG/M
3300005332\|Ga0066388_100088323	All Organisms → cellular organisms → Bacteria	3510	Open in IMG/M
3300005332\|Ga0066388_101190722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1301	Open in IMG/M
3300005332\|Ga0066388_101450106	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1196	Open in IMG/M
3300005332\|Ga0066388_103575545	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	793	Open in IMG/M
3300005332\|Ga0066388_104162850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	737	Open in IMG/M
3300005336\|Ga0070680_100841164	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300005347\|Ga0070668_100286770	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1377	Open in IMG/M
3300005354\|Ga0070675_100357579	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300005445\|Ga0070708_100363019	All Organisms → cellular organisms → Bacteria	1365	Open in IMG/M
3300005445\|Ga0070708_100365571	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1360	Open in IMG/M
3300005446\|Ga0066686_11087622	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300005447\|Ga0066689_10923438	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	539	Open in IMG/M
3300005459\|Ga0068867_100561154	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	990	Open in IMG/M
3300005468\|Ga0070707_102307003	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300005471\|Ga0070698_100927491	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300005518\|Ga0070699_100239489	All Organisms → cellular organisms → Bacteria	1619	Open in IMG/M
3300005518\|Ga0070699_100317822	All Organisms → cellular organisms → Bacteria → Proteobacteria	1399	Open in IMG/M
3300005536\|Ga0070697_100016215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5858	Open in IMG/M
3300005546\|Ga0070696_100428391	Not Available	1040	Open in IMG/M
3300005547\|Ga0070693_100668612	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300005549\|Ga0070704_101483197	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	623	Open in IMG/M
3300005555\|Ga0066692_10018362	All Organisms → cellular organisms → Bacteria → Proteobacteria	3496	Open in IMG/M
3300005555\|Ga0066692_11014891	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	507	Open in IMG/M
3300005558\|Ga0066698_10001547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10118	Open in IMG/M
3300005558\|Ga0066698_10894080	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300005558\|Ga0066698_10909718	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300005574\|Ga0066694_10102941	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1336	Open in IMG/M
3300005598\|Ga0066706_10743029	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	778	Open in IMG/M
3300005618\|Ga0068864_100963971	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300005713\|Ga0066905_100506421	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300005713\|Ga0066905_100614679	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300005713\|Ga0066905_101441759	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	625	Open in IMG/M
3300005764\|Ga0066903_105293846	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	682	Open in IMG/M
3300005937\|Ga0081455_10136209	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1913	Open in IMG/M
3300006049\|Ga0075417_10124230	Not Available	1186	Open in IMG/M
3300006794\|Ga0066658_10436240	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	713	Open in IMG/M
3300006845\|Ga0075421_100184689	All Organisms → cellular organisms → Bacteria	2590	Open in IMG/M
3300006847\|Ga0075431_100120381	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2708	Open in IMG/M
3300006847\|Ga0075431_100851797	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	883	Open in IMG/M
3300006847\|Ga0075431_101145387	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300006871\|Ga0075434_100057140	All Organisms → cellular organisms → Bacteria	3878	Open in IMG/M
3300006881\|Ga0068865_101592582	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300006904\|Ga0075424_100888567	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300007004\|Ga0079218_12144052	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300007255\|Ga0099791_10228390	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	880	Open in IMG/M
3300007265\|Ga0099794_10691750	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300009012\|Ga0066710_100013826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8448	Open in IMG/M
3300009093\|Ga0105240_11938593	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300009147\|Ga0114129_10252521	All Organisms → cellular organisms → Bacteria → Proteobacteria	2367	Open in IMG/M
3300009147\|Ga0114129_10365702	All Organisms → cellular organisms → Bacteria → Proteobacteria	1908	Open in IMG/M
3300009177\|Ga0105248_10953434	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300009819\|Ga0105087_1028423	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	839	Open in IMG/M
3300009822\|Ga0105066_1038363	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	988	Open in IMG/M
3300010360\|Ga0126372_11347442	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300010362\|Ga0126377_10880988	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300010366\|Ga0126379_10157731	All Organisms → cellular organisms → Bacteria	2125	Open in IMG/M
3300010366\|Ga0126379_11867302	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300010397\|Ga0134124_11295293	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300010398\|Ga0126383_12704118	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	579	Open in IMG/M
3300010399\|Ga0134127_12558323	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	590	Open in IMG/M
3300010403\|Ga0134123_10073534	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2641	Open in IMG/M
3300012202\|Ga0137363_10632924	Not Available	904	Open in IMG/M
3300012207\|Ga0137381_11166634	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	662	Open in IMG/M
3300012351\|Ga0137386_11143899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	547	Open in IMG/M
3300012685\|Ga0137397_10019964	All Organisms → cellular organisms → Bacteria	4702	Open in IMG/M
3300012922\|Ga0137394_10110842	All Organisms → cellular organisms → Bacteria	2317	Open in IMG/M
3300012922\|Ga0137394_11323514	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300012930\|Ga0137407_10066011	All Organisms → cellular organisms → Bacteria	2996	Open in IMG/M
3300012930\|Ga0137407_10108722	All Organisms → cellular organisms → Bacteria	2390	Open in IMG/M
3300012930\|Ga0137407_11614036	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	618	Open in IMG/M
3300012930\|Ga0137407_12304203	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300012944\|Ga0137410_10912485	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	743	Open in IMG/M
3300015264\|Ga0137403_10014129	All Organisms → cellular organisms → Bacteria	8697	Open in IMG/M
3300015374\|Ga0132255_105288147	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300016422\|Ga0182039_10918067	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300016445\|Ga0182038_10930604	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300017930\|Ga0187825_10245501	All Organisms → cellular organisms → Bacteria → Proteobacteria	655	Open in IMG/M
3300018052\|Ga0184638_1233272	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300018078\|Ga0184612_10046880	All Organisms → cellular organisms → Bacteria	2249	Open in IMG/M
3300018481\|Ga0190271_11125028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	908	Open in IMG/M
3300018482\|Ga0066669_10057994	All Organisms → cellular organisms → Bacteria	2491	Open in IMG/M
3300018920\|Ga0190273_11998177	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300019487\|Ga0187893_10175083	All Organisms → cellular organisms → Bacteria	1694	Open in IMG/M
3300019789\|Ga0137408_1145470	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300020004\|Ga0193755_1101053	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300021073\|Ga0210378_10113593	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300021344\|Ga0193719_10446531	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300021560\|Ga0126371_11528614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	795	Open in IMG/M
3300025157\|Ga0209399_10188335	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	826	Open in IMG/M
3300025910\|Ga0207684_10451730	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1103	Open in IMG/M
3300025910\|Ga0207684_11556778	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300025911\|Ga0207654_11391092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	512	Open in IMG/M
3300025917\|Ga0207660_10801738	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300025917\|Ga0207660_11271849	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	598	Open in IMG/M
3300025918\|Ga0207662_10732539	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	694	Open in IMG/M
3300025923\|Ga0207681_10779506	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300026296\|Ga0209235_1142720	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	968	Open in IMG/M
3300026530\|Ga0209807_1139417	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	947	Open in IMG/M
3300026537\|Ga0209157_1286055	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300026538\|Ga0209056_10207048	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1430	Open in IMG/M
3300027324\|Ga0209845_1041290	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	733	Open in IMG/M
3300027882\|Ga0209590_10315575	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1005	Open in IMG/M
3300027886\|Ga0209486_10276005	Not Available	981	Open in IMG/M
3300028828\|Ga0307312_10244680	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300030620\|Ga0302046_10741936	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300031543\|Ga0318516_10242816	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300031548\|Ga0307408_100369815	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300031573\|Ga0310915_10610945	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	772	Open in IMG/M
3300031680\|Ga0318574_10083164	All Organisms → cellular organisms → Bacteria → Proteobacteria	1749	Open in IMG/M
3300031680\|Ga0318574_10236076	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300031720\|Ga0307469_11348103	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	679	Open in IMG/M
3300031740\|Ga0307468_100945776	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300031740\|Ga0307468_102077047	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300031740\|Ga0307468_102372367	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300031744\|Ga0306918_10354982	All Organisms → cellular organisms → Bacteria → Proteobacteria	1138	Open in IMG/M
3300031770\|Ga0318521_10071476	All Organisms → cellular organisms → Bacteria → Proteobacteria	1850	Open in IMG/M
3300031797\|Ga0318550_10045800	All Organisms → cellular organisms → Bacteria	1949	Open in IMG/M
3300031820\|Ga0307473_10211159	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300031847\|Ga0310907_10160410	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1041	Open in IMG/M
3300032003\|Ga0310897_10219901	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	837	Open in IMG/M
3300032041\|Ga0318549_10343166	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	673	Open in IMG/M
3300032059\|Ga0318533_10513983	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	878	Open in IMG/M
3300032174\|Ga0307470_10136124	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300032180\|Ga0307471_100445977	Not Available	1432	Open in IMG/M
3300032180\|Ga0307471_100835801	All Organisms → cellular organisms → Bacteria → Proteobacteria	1088	Open in IMG/M
3300032180\|Ga0307471_103465455	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	558	Open in IMG/M
3300032205\|Ga0307472_100612677	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	963	Open in IMG/M
3300033432\|Ga0326729_1072605	All Organisms → cellular organisms → Bacteria → Proteobacteria	525	Open in IMG/M
3300033500\|Ga0326730_1078663	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300034115\|Ga0364945_0172405	Not Available	654	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.21%
Host-Associated	Host-Associated	14.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.99%
Plants	Host-Associated → Plants	14.79%
Aquatic	Environmental → Aquatic	4.23%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.52%
Freshwater	Environmental → Aquatic → Freshwater	1.41%
Sediment	Environmental → Aquatic → Sediment	1.41%
Peat	Environmental → Terrestrial → Peat	1.41%
Marine	Environmental → Aquatic → Marine	0.70%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.70%
Cave	Environmental → Terrestrial → Cave	0.70%
Floodplain	Environmental → Terrestrial → Floodplain	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.75%
Loam	Environmental → Terrestrial → Soil → Loam	18.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.15%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.82%
Sand	Environmental → Terrestrial → Soil → Sand	2.11%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.41%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.41%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.70%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.70%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.70%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.70%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.82%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.41%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.41%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.41%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.41%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.70%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.70%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.70%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.70%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.70%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.49%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.27%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.04%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.23%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.23%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.11%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.11%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.11%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.11%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.41%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.41%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.41%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.41%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.41%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.70%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.70%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.70%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.70%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.70%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.70%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.70%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004052	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009819	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025157	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027324	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033432	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF6AY SIP fraction	Environmental	Open in IMG/M
3300033500	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF7AN SIP fraction	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01037660	2088090014	Soil	RDDFGLSQIICWFDQGSMLPRDEVERTMRRFVDQVMPKLG
deepsgr_00501290	2199352025	Soil	AARDDFGLSQIICWFDQGSMLPRDEVERTMRRFVDQVMPKLG
JGI1027J12803_1095193053	3300000955	Soil	FGDAAEVVDRLEAAREELNLSQIICWFDQGAMLPRAEVERTMRRF
JGI10216J12902_1008056891	3300000956	Soil	EELNLSQIICWFDQGAMLPRAEVERTMRRFAEEVMPRIA*
JGI10216J12902_1095606512	3300000956	Soil	DEFGLSQIIGWFDQGNRLPRAEVERTMRAFAERVMPKLS*
Ga0055490_101760392	3300004052	Natural And Restored Wetlands	HAIFAEPPACIDRLQAIRDEFDLSQIICWFDQGCMLPVDEVKRCMALFADTVMPGLS*
Ga0066396_100983162	3300004267	Tropical Forest Soil	LQAARDEFGLSQIICWFDQGSMLPRAEVERAMRRFADEVMPKLR*
Ga0066674_101914041	3300005166	Soil	FGLSQIICWFDQGSMLPRHEVERTMRQFADEIMPKLASG*
Ga0066680_103715511	3300005174	Soil	VVDRLQAARDEFGLSQIICWFDQGSMLPRAEVERAMRQFSDEVMPKLS*
Ga0066680_107573331	3300005174	Soil	VVDRLQAARDEFGLSQIICWFDQGSMLPRAEVERAMRQFTDEVMPKFR*
Ga0066690_110449891	3300005177	Soil	RDEFGLSQIICWFDQGNRLPRAEVERTMRAFAERVMPKLS*
Ga0066678_108025231	3300005181	Soil	DEFGLSQIICWFDQGSMLPRAEVERVMRRFIDEVAPKLA*
Ga0066388_1000883231	3300005332	Tropical Forest Soil	DEFALSQVICWFDQGNMLPRPEVERAIRRFSEQVMPKVA*
Ga0066388_1011907221	3300005332	Tropical Forest Soil	QAAREEFSLSQIICWFDQGSMLPRAEAERTMRQFVDHVMPKLA*
Ga0066388_1014501061	3300005332	Tropical Forest Soil	AVEVADRLAAARDEFGLSQIICWFDQGSMLPRAEVERAMRRFADEVMPKL*
Ga0066388_1035755451	3300005332	Tropical Forest Soil	AVEVADRLAAARDEFGLSQIICWFDQGSMLPRAEVERAMHRFAEEVMPKL*
Ga0066388_1041628503	3300005332	Tropical Forest Soil	EEFSLSQIICWFDQGSMLPRAEAERTMRQFVDHVMPKLA*
Ga0070680_1008411642	3300005336	Corn Rhizosphere	KEEFNLSQIICWFDQGAMLPRAEVERVMRQFAEKVMPKLR*
Ga0070668_1002867701	3300005347	Switchgrass Rhizosphere	AAELVDRLQAAREEFGLSQIIGWFDQGSRLPRDEVERSMRRFAETVMPKLA*
Ga0070675_1003575793	3300005354	Miscanthus Rhizosphere	IDRLQAARDDFGLSQIICWFDQGSMLPRDEVERTMRRFVDQVMPKLG*
Ga0070708_1003630191	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LEAAREELSLSQIICWFDQGAMLPRAEVERTMRRFAEEVMPRIA*
Ga0070708_1003655711	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	RLQAARDEFGLSQIIGWFDQGSMLTRDEVERTMRRFADQAMPKLAAG*
Ga0066686_110876222	3300005446	Soil	DASEVIDRLQAARDDFGLSQIICWFDQGSMLPRDEVERTMRRFVDQVMPKLG*
Ga0066689_109234382	3300005447	Soil	DEFGLSQIICWFDQGAMLPRAEVERAMRRFTDEVMPKLR*
Ga0068867_1005611542	3300005459	Miscanthus Rhizosphere	RAKEEFGLSQIIGWFDQGAMLPRAEVERAMRLFAERVIPKVG*
Ga0070707_1023070031	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	QAARDEFGLSQIIGWFDQGSMLPREEAERAMRRFAEQVMPKLA*
Ga0070698_1009274912	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LSQIICWFDQGAMLPRAEVERTMRRFAEEVMPRVTPTGS*
Ga0070699_1002394892	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	DRLQAARDEFGLSQIICWFDQGSMLPRDEAERAMRRFADHVMPKLA*
Ga0070699_1003178221	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	DRLQAARDEFGLSQIIAWFDQGCMLPRAEVEASMRRFAEHVMPKLA*
Ga0070697_1000162156	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	IEEFQLSQVICWFDQGSMLPRPEVERVMRRFAEQVMPKL*
Ga0070696_1004283911	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	RDEFGLSQIIGWFDQGSMLPRDEAERAMRRFADHVMPKLA*
Ga0070693_1006686123	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	RLQAVREEFGLSEMIGWFDQGSMLPRDEAERSLRRFAEQVMPKLN*
Ga0070704_1014831971	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	LQAVRDEFGLSQIICWFDQGAMLPRADVERAMRRFTDEVMPKLR*
Ga0066692_100183626	3300005555	Soil	REDFGLSQIICWFDQGSMLPRHEVERTMRQFADEIMPKLASG*
Ga0066692_110148912	3300005555	Soil	LSQIICWFDQGSMLPRAEVERAMRQFTDEVMPKLR*
Ga0066698_1000154710	3300005558	Soil	AEVVDRLQAARDEFGLSQIICWFDQGAMLPRAEVERAMRRFTDEVMPKLR*
Ga0066698_108940801	3300005558	Soil	VVDRLQAARDEFGLSQIICWFDQGCMLPRDEAERAMQRFADHVMPKLG*
Ga0066698_109097182	3300005558	Soil	VDRLQAARDEFGLSQIIGWFDQGSMLGREETERAMRRFADHVMPKLA*
Ga0066694_101029412	3300005574	Soil	RDEFGLSQIICWFDQGSRLPRAEVERAMRRFADQVMPKLA*
Ga0066706_107430292	3300005598	Soil	ARDEFGLSQIICWFDQGSMLPRAEVERAMRQFTDEVMPKLR*
Ga0068864_1009639711	3300005618	Switchgrass Rhizosphere	NLSQIICWFDQGAMLPRAEVERTMRRFAEEVMPRLG*
Ga0066905_1005064211	3300005713	Tropical Forest Soil	RDEFGLSQIICWFDQGSELPRDEVEQTMRRFVDHVMPKLA*
Ga0066905_1006146791	3300005713	Tropical Forest Soil	FGLSQIICWFDQGAMLPRSEVERSMRRFADEVMPKLR*
Ga0066905_1014417591	3300005713	Tropical Forest Soil	RLQAARDEFGLSQIICWFDQGSMLPRAEVERAMRRFTDEVMPKLR*
Ga0066903_1052938461	3300005764	Tropical Forest Soil	LSQIICWFDQGSMLPRQDVERAMRRFAEQVMPKLA*
Ga0081455_101362091	3300005937	Tabebuia Heterophylla Rhizosphere	EFGLSQIICWFDQGSMLPRAEVERAMRRFIDEIAPKLR*
Ga0075417_101242301	3300006049	Populus Rhizosphere	DFGLSQIICWFDQGNMLPRHEVERAIRRFSEQVMPKVV*
Ga0066658_104362402	3300006794	Soil	GLAQIICWFDQGAMLPRAEVERAMRQFTDEVMPKFR*
Ga0075421_1001846891	3300006845	Populus Rhizosphere	LQAARDEFGLSQIICWFDQGSMLPRAEAERAMRRFIDEIAPKLT*
Ga0075431_1001203811	3300006847	Populus Rhizosphere	LSQIICWFDQGSMLPRAEVERAMRRFTDEVMPKLR*
Ga0075431_1008517972	3300006847	Populus Rhizosphere	VVDRLQAAKEEFGLSQIISWFDQGSMLPRAEVERTMRRFAEQVMPKL*
Ga0075431_1011453871	3300006847	Populus Rhizosphere	QAARDEFGLSQIIAWFDQGCMLPRAEVEASMRRFAEHVMPKLA*
Ga0075434_1000571405	3300006871	Populus Rhizosphere	ARDEFGLSQIIAWFDQGAMLPRAEVERAMRQFIEQVAPKL*
Ga0068865_1015925821	3300006881	Miscanthus Rhizosphere	RLQRAKEEFGLSQIIGWFDQGAMLPRAEVERAMRLFAERVIPKLG*
Ga0075424_1008885671	3300006904	Populus Rhizosphere	LQAARDEFGLSQIIAWFDQGGMLPRAEVERAMRQFVEQVAPKL*
Ga0079218_121440522	3300007004	Agricultural Soil	GLSQIIGWFDQGSMLRRDEVERTLRRFAEHVMPKLA*
Ga0099791_102283901	3300007255	Vadose Zone Soil	GLSQIISWFDQGSMLARAEVERTMRRFADEVMPKLA*
Ga0099794_106917501	3300007265	Vadose Zone Soil	VIERLQAAREDFGLSQIICWFDQGSMLPRPEVERTMRQFADEVMPKLASG*
Ga0066710_1000138261	3300009012	Grasslands Soil	QAARDEFGLSQIICWFDQGCMLPRDEAERAMQRFADHVMPKLG
Ga0105240_119385931	3300009093	Corn Rhizosphere	ELNLSQIICWFDQGAMLPRAEVERTMRRFAEEVMPRLG*
Ga0114129_102525214	3300009147	Populus Rhizosphere	RDEFGLSQIICWFDQGNMLPRPEVERAIRRFAEQVMPKVA*
Ga0114129_103657023	3300009147	Populus Rhizosphere	SQIIGWFDQGNRLPRAEVERTMRVFAERVMPKLS*
Ga0105248_109534341	3300009177	Switchgrass Rhizosphere	EELSLSQIICWFDQGAMLPRAEVERTMRRFAEEVMPRLG*
Ga0105087_10284232	3300009819	Groundwater Sand	RDEFGLSQIICWFDQGSMLPRAEVERTMRRFADDVMPKLSA*
Ga0105066_10383632	3300009822	Groundwater Sand	LQAARDEFGLSQIISWFDQGSMLPRAEVERTMRRFADEVMPKLA*
Ga0126372_113474423	3300010360	Tropical Forest Soil	GDAAEVVDKLQAAREEFSLSQIICWFDQGSMLPRAEAERTMRQFVDHVMPKLA*
Ga0126377_108809881	3300010362	Tropical Forest Soil	EVIDRLQAARDEFGLSQIIAWFDQGAMLPRAEVERAMRQFIEQVAPKL*
Ga0126379_101577311	3300010366	Tropical Forest Soil	RLQAARDEFGLSQIICWFDQGSMLPRAEVERTMQSFVDHVMPKLA*
Ga0126379_118673021	3300010366	Tropical Forest Soil	EVIDKLQAAREEFGLSQIICWFDQGSMLPRAEAERTMRQFVDHVMPKLA*
Ga0134124_112952931	3300010397	Terrestrial Soil	AAEVIDRLQVVREEFGLSEIMGWFDQGSMLPRDEAERSLRRFAEQVMPKLN*
Ga0126383_127041181	3300010398	Tropical Forest Soil	IDKLQAAREEFSLSQIICWFDQGSMLPRPEVERTMRQFVDQVMPKLA*
Ga0134127_125583231	3300010399	Terrestrial Soil	LQAARDDFGLSQIICWFDQGSMLPRSEVERSMRRFADEVMPKLR*
Ga0134123_100735343	3300010403	Terrestrial Soil	DEFGLSQIICWFDQGSMLPRAEAERAMRRFIDEIAPKLT*
Ga0137363_106329242	3300012202	Vadose Zone Soil	LQAARDEFGLSQIIGWFDQGSMLGREEAERAMRRFADHVMPKLA*
Ga0137381_111666342	3300012207	Vadose Zone Soil	IDKLQAARDDFGLSQIICWFDQGNMLPRAEVERTMRRFADEVMPKLR*
Ga0137386_111438993	3300012351	Vadose Zone Soil	LSQIICWFDQGSMLPRDEVERTMRRFVDQVMPKLG*
Ga0137397_100199647	3300012685	Vadose Zone Soil	IICWFDQGSMLPRHEVERTMRQFADEVMPKLAAG*
Ga0137394_101108421	3300012922	Vadose Zone Soil	LSQLICWFDQGAMLPRAEVERAMRTFAEQVMPKLG*
Ga0137394_113235141	3300012922	Vadose Zone Soil	QAVREEFGLSEIIGWFDQGAMLPRDEAERSMRRFAEQVMPKLS*
Ga0137407_100660114	3300012930	Vadose Zone Soil	KEEFGLSQIIGWFDQGAMLPRAEVERAMRAFAEQVMPKLG*
Ga0137407_101087221	3300012930	Vadose Zone Soil	LSQIISWFDQGSMLPRAEVERTMRRFADEVMPKLA*
Ga0137407_116140362	3300012930	Vadose Zone Soil	DEFGLSQIISWFDQGSMLPRAEVERTMRRFADEVMPKLG*
Ga0137407_123042032	3300012930	Vadose Zone Soil	QAAREDFGLSQIICWFDQGSMLPRPEVERTMRLFADEVMPKLASG*
Ga0137410_109124852	3300012944	Vadose Zone Soil	ARDEFGLSQIIAWFDQGNVLPRAEVERTMRRFADEVMPKLGHERG*
Ga0137403_100141299	3300015264	Vadose Zone Soil	DTAEVVDRLQAAKEEFGLSQIIGWFDQGAMLPRAEVERAMRTFAEQVMPKLG*
Ga0132255_1052881471	3300015374	Arabidopsis Rhizosphere	IVDRLQAAREEFGLSQIIGWFDQGARLPRAEVERAMRRFADEVMPKLA*
Ga0182039_109180671	3300016422	Soil	VDRLQVIRDEFGLSQIIGWFDQGGMLPRVEVERAMRRFSDEVMPKLR
Ga0182038_109306041	3300016445	Soil	VRDEFGLSQIICWFDQGSMLPRPEVERTMRQFVDHVMPKLA
Ga0187825_102455012	3300017930	Freshwater Sediment	GLSQVICWFDQGSMLPRPEVERTMRRFAEQVMPKL
Ga0184638_12332721	3300018052	Groundwater Sediment	DEFGLSQIISWFDQGSMLPRAEVERTMQRYAEEVMPKLASG
Ga0184612_100468803	3300018078	Groundwater Sediment	GLSQIICWFDQGAMLPRVEVERVMRQFAEQVMPKLR
Ga0190271_111250281	3300018481	Soil	FGLCQLICWFDQGNMLPMDEARQVMKRFADQVMPKL
Ga0066669_100579941	3300018482	Grasslands Soil	DEFGLSQIICWFDQGSRLPRAEVERAMRRFADQVMPKLA
Ga0190273_119981772	3300018920	Soil	LEAAREELSLSQIICWFDQGAMLPRAEVERAMRTFAEQVMPKLG
Ga0187893_101750833	3300019487	Microbial Mat On Rocks	DEFGLSQIICWFDQGSMLPRVEVERTMRAFAEQVMPKLR
Ga0137408_11454701	3300019789	Vadose Zone Soil	AAKEEFGLSQIIGWFDQGAMLPRAEVERTMRRFAEHEQVMPKLG
Ga0193755_11010532	3300020004	Soil	DFGLSQIICWFDQGAMLPRAEVERAMRTFAEQVMPKLG
Ga0210378_101135932	3300021073	Groundwater Sediment	GLSQIICWFDQGSMLPRVEVERVMRQFAEQVMPKLR
Ga0193719_104465312	3300021344	Soil	QAREEFGLSQIIGWFDQGSRLPRAEVERTLRRFAEEVMPKLASG
Ga0126371_115286141	3300021560	Tropical Forest Soil	AREEFGLSQIICWFDQGSMLPRAEVERTMRQFVDHIMPKLA
Ga0209399_101883352	3300025157	Thermal Springs	VASAARDDFGLSQIICWFDQGNMLPRAEVERTMRRFAEQVMPKLA
Ga0207684_104517303	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	ELSQIICWFDQGSMLPRAEVERAMRQFTDEVMPKLR
Ga0207684_115567782	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	RLEAAREELSLSQIICWFDQGAMLPRAEVERTMRRFAEEVMPRIA
Ga0207654_113910921	3300025911	Corn Rhizosphere	DRLQAARDDFGLSQIICWFDQGSMLPRDEVERTMRRFVDQVMPKLG
Ga0207660_108017382	3300025917	Corn Rhizosphere	KEEFNLSQIICWFDQGAMLPRAEVERVMRQFAEKVMPKLR
Ga0207660_112718492	3300025917	Corn Rhizosphere	DEFQLSQIICWFDQGGMLPRAEVERAMRHFTDEVMPKLR
Ga0207662_107325392	3300025918	Switchgrass Rhizosphere	DRLQAVRDEFGLSQIICWFDQGAMLPRADVERAMRRFTDEVMPKLR
Ga0207681_107795061	3300025923	Switchgrass Rhizosphere	RLQAARDDFGLSQIICWFDQGSMLPRDEVERTMRRFVDQVMPKLG
Ga0209235_11427201	3300026296	Grasslands Soil	DRLQAARGEFGLSQIICWFDQGSRLAREEVERAMRQFADHVMPKLA
Ga0209807_11394171	3300026530	Soil	EVLDRLQAARDDFGLSQIICWFDQGNMLPRAEVERTMRRFADEVMPKLR
Ga0209157_12860552	3300026537	Soil	ERLQAAREDFGLSQIICWFDQGSMLPRHEVERTMRQFADEIMPKLASG
Ga0209056_102070484	3300026538	Soil	EVVDRLQAARDEFGLSQIICWFDQGSMLPRGEVERAMGRFADEVMPKLA
Ga0209845_10412902	3300027324	Groundwater Sand	LQAARDEFGLSQIISWFDQGSMLPRAEVERTMRRFADEVMPKLA
Ga0209590_103155753	3300027882	Vadose Zone Soil	LSQIISWFDQGSMLPRAEVERTMRRFADEVMPKVA
Ga0209486_102760052	3300027886	Agricultural Soil	EFGLSQIIGWFDQGSMLRRDEVERTLRRFAEHVMPKLA
Ga0307312_102446803	3300028828	Soil	KEVFGLSQIICWFDQGAMLPRAEVERAMRTFAEQVMPKLG
Ga0302046_107419361	3300030620	Soil	EEEFNLSQIICWFDQGAMLPRAEVERTMRQFAEQVMPKLR
Ga0318516_102428161	3300031543	Soil	VVDRLQAIRDEFGLSQIIGWFDQGGMLPRAEVERAMRRFSDEVMPKLR
Ga0307408_1003698151	3300031548	Rhizosphere	FGLSQIIGWFDQGSMLRRDEVERTLRRFAEHVMPKLA
Ga0310915_106109451	3300031573	Soil	RDEFGLSQIIGWFDQGGMLPRVEVERAMRRFSDEVMPKLR
Ga0318574_100831641	3300031680	Soil	LQAVRDEFGLSQIICWFDQGSMLPRPEVERTMRQFVDHVMPKLA
Ga0318574_102360764	3300031680	Soil	FGLSQIIGWFDQGGMLPRVEVERAMRRFSDEVMPKLR
Ga0307469_113481031	3300031720	Hardwood Forest Soil	LQAAREEFGLSQIIGWFDQGARLPRDEVERSMRRFAETVMPKLA
Ga0307468_1009457761	3300031740	Hardwood Forest Soil	AAEVVDRLQAVREEFGLSEIIGWFDQGSMLPRDEAERSMRRFAEQVMPKLS
Ga0307468_1020770471	3300031740	Hardwood Forest Soil	DFGLSQIICWFDQGNMLPRKEVAATMKRFAESVMPKLA
Ga0307468_1023723671	3300031740	Hardwood Forest Soil	EVVDSIHAARDEFGLSQVIAWFDQGCMLPRAEVERAMRRFAEHVMPKLA
Ga0306918_103549821	3300031744	Soil	GLSQIICWFDQGSMLPRPEVERTMRQFVDHVMPKLA
Ga0318521_100714761	3300031770	Soil	VIDKLQAVRDEFGLSQIICWFDQGSMLPRPEVERTMRQFVDHVMPKLA
Ga0318550_100458001	3300031797	Soil	GLSQIICWFDQGSMLPRAEAERAMRRFTDEVMPKLR
Ga0307473_102111591	3300031820	Hardwood Forest Soil	LNLSQIICWFDQGAMLPRAEVERTMRRFAEEVIPRVG
Ga0310907_101604102	3300031847	Soil	DRLQAAREEFGLSQVIGWFDQGSRLPRDEVERSMRRFAETVMPKLA
Ga0310897_102199012	3300032003	Soil	GLSQIICWFDQGAMLPRADVERAMRRFADEVMPKLR
Ga0318549_103431662	3300032041	Soil	EFGLSQIICWFDQGSMLPRAEAERAMRRFTDEVMPKLR
Ga0318533_105139834	3300032059	Soil	IRDEFGLSQIIGWFDQGGMLPRVEVERAMRRFSDEVMPKLR
Ga0307470_101361243	3300032174	Hardwood Forest Soil	AAREEFGLSQIIGWFDQGSRLPRDEVERSMRRFAETVMPKLV
Ga0307471_1004459771	3300032180	Hardwood Forest Soil	GLSQIIGWFDQGNMLPRAEVERAMRRFAEQVMPKVA
Ga0307471_1008358013	3300032180	Hardwood Forest Soil	IDRLQAARDDFGLSQIICWFDQGSMLPRDEVERTMRRFVDQVMPKLG
Ga0307471_1034654551	3300032180	Hardwood Forest Soil	DRLQAAREEFGLSQIIGWFDQGSRLPRDEVERSMRRFAETVMPKLA
Ga0307472_1006126772	3300032205	Hardwood Forest Soil	AEVVDRLQAVRDEFGLSQIICWFDQGAMLPRADVERAMRRFTDEVMPKLR
Ga0326729_10726052	3300033432	Peat Soil	DRQQAARDEFGLSQIICWFDQGSMLPRQEVEDTMRRFVEHVMPKLA
Ga0326730_10786631	3300033500	Peat Soil	EFGLSQIICWFDQGSMLPRQEVEDTMRWFVEHVMPKLA
Ga0364945_0172405_2_139	3300034115	Sediment	RLQAVREEFGLSEIIGWFDQGSMLPRDEAERSMRRFAEQVMPKLS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F052506

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences