Metagenome / Metatranscriptome Family F052426

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F052426
Family Type	Metagenome / Metatranscriptome
Number of Sequences	142
Average Sequence Length	67 residues
Representative Sequence	TDEQRSRRPIFIATLRAVAGWLFFRVARSLRINADMLVARALKNSQLTDGESHAIYGTGH
Number of Associated Samples	80
Number of Associated Scaffolds	142

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.29 %
% of genes near scaffold ends (potentially truncated)	85.92 %
% of genes from short scaffolds (< 2000 bps)	73.94 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.606 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil (17.606 % of family members)
Environment Ontology (ENVO)	Unclassified (41.549 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.634 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.68% β-sheet: 0.00% Coil/Unstructured: 44.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 142 Family Scaffolds
PF00528	BPD_transp_1	2.82
PF00294	PfkB	2.11
PF03647	Tmemb_14	2.11
PF01168	Ala_racemase_N	1.41
PF13419	HAD_2	1.41
PF00923	TAL_FSA	1.41
PF01144	CoA_trans	1.41
PF06826	Asp-Al_Ex	1.41
PF13302	Acetyltransf_3	1.41
PF04632	FUSC	1.41
PF00005	ABC_tran	1.41
PF06925	MGDG_synth	1.41
PF00398	RrnaAD	1.41
PF12680	SnoaL_2	1.41
PF02545	Maf	1.41
PF03710	GlnE	1.41
PF00873	ACR_tran	1.41
PF02525	Flavodoxin_2	0.70
PF05201	GlutR_N	0.70
PF07859	Abhydrolase_3	0.70
PF00440	TetR_N	0.70
PF01842	ACT	0.70
PF08442	ATP-grasp_2	0.70
PF02954	HTH_8	0.70
PF01018	GTP1_OBG	0.70
PF13531	SBP_bac_11	0.70
PF00186	DHFR_1	0.70
PF05222	AlaDh_PNT_N	0.70
PF00583	Acetyltransf_1	0.70
PF00293	NUDIX	0.70
PF03976	PPK2	0.70
PF13191	AAA_16	0.70
PF08808	RES	0.70
PF12867	DinB_2	0.70
PF09924	LPG_synthase_C	0.70
PF07885	Ion_trans_2	0.70
PF05943	VipB	0.70
PF00132	Hexapep	0.70
PF00069	Pkinase	0.70
PF16901	DAO_C	0.70
PF00701	DHDPS	0.70
PF04461	DUF520	0.70
PF00908	dTDP_sugar_isom	0.70
PF01734	Patatin	0.70
PF00106	adh_short	0.70
PF02622	DUF179	0.70
PF01263	Aldose_epim	0.70
PF12833	HTH_18	0.70
PF13537	GATase_7	0.70
PF08447	PAS_3	0.70
PF10431	ClpB_D2-small	0.70
PF13676	TIR_2	0.70
PF00753	Lactamase_B	0.70
PF06964	Alpha-L-AF_C	0.70
PF02080	TrkA_C	0.70
PF13520	AA_permease_2	0.70
PF12681	Glyoxalase_2	0.70
PF13413	HTH_25	0.70
PF13522	GATase_6	0.70
PF01850	PIN	0.70
PF02195	ParBc	0.70
PF01556	DnaJ_C	0.70
PF17137	DUF5110	0.70
PF13624	SurA_N_3	0.70
PF04198	Sugar-bind	0.70
PF01522	Polysacc_deac_1	0.70
PF05258	DciA	0.70
PF00578	AhpC-TSA	0.70
PF02283	CobU	0.70
PF00775	Dioxygenase_C	0.70
PF00196	GerE	0.70
PF05690	ThiG	0.70
PF05368	NmrA	0.70
PF00912	Transgly	0.70
PF14342	DUF4396	0.70
PF03600	CitMHS	0.70
PF02780	Transketolase_C	0.70
PF00535	Glycos_transf_2	0.70
PF01730	UreF	0.70
PF02621	VitK2_biosynth	0.70
PF13493	DUF4118	0.70
PF00232	Glyco_hydro_1	0.70
PF13533	Biotin_lipoyl_2	0.70
PF00497	SBP_bac_3	0.70
PF10041	DUF2277	0.70
PF13328	HD_4	0.70
PF01370	Epimerase	0.70
PF13638	PIN_4	0.70
PF00474	SSF	0.70
PF00171	Aldedh	0.70
PF07848	PaaX	0.70

COG ID	Name	Functional Category	% Frequency in 142 Family Scaffolds
COG1391	Glutamine synthetase adenylyltransferase	Posttranslational modification, protein turnover, chaperones [O]	2.82
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.82
COG5548	Uncharacterized membrane protein, UPF0136 family	Function unknown [S]	2.11
COG0424	7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.41
COG2985	Uncharacterized membrane protein YbjL, putative transporter	General function prediction only [R]	1.41
COG0707	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	Cell wall/membrane/envelope biogenesis [M]	1.41
COG1289	Uncharacterized membrane protein YccC	Function unknown [S]	1.41
COG0458	Carbamoylphosphate synthase large subunit	Amino acid transport and metabolism [E]	1.41
COG4670	Acyl CoA:acetate/3-ketoacid CoA transferase	Lipid transport and metabolism [I]	1.41
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.41
COG2057	Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit	Lipid transport and metabolism [I]	1.41
COG0176	Transaldolase/fructose-6-phosphate aldolase	Carbohydrate transport and metabolism [G]	1.41
COG1788	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit	Lipid transport and metabolism [I]	1.41
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	1.41
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.70
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.70
COG2087	Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase	Coenzyme transport and metabolism [H]	0.70
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.70
COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	Transcription [K]	0.70
COG2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	Carbohydrate transport and metabolism [G]	0.70
COG2022	Thiazole synthase ThiGH, ThiG subunit (thiamin biosynthesis)	Coenzyme transport and metabolism [H]	0.70
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.70
COG3517	Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family	Intracellular trafficking, secretion, and vesicular transport [U]	0.70
COG3534	Alpha-L-arabinofuranosidase	Carbohydrate transport and metabolism [G]	0.70
COG1666	Cyclic di-GMP-binding protein YajQ, UPF0234 family	Signal transduction mechanisms [T]	0.70
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.70
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.70
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.70
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	0.70
COG5512	Predicted nucleic acid-binding protein, contains Zn-ribbon domain (includes truncated derivatives)	General function prediction only [R]	0.70
COG5654	Predicted toxin component of a toxin-antitoxin system, contains RES domain	Defense mechanisms [V]	0.70
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.70
COG0026	Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)	Nucleotide transport and metabolism [F]	0.70
COG0045	Succinyl-CoA synthetase, beta subunit	Energy production and conversion [C]	0.70
COG0151	Phosphoribosylamine-glycine ligase	Nucleotide transport and metabolism [F]	0.70
COG0214	Pyridoxal 5'-phosphate synthase subunit PdxS	Coenzyme transport and metabolism [H]	0.70
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.70
COG0373	Glutamyl-tRNA reductase	Coenzyme transport and metabolism [H]	0.70
COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	Posttranslational modification, protein turnover, chaperones [O]	0.70
COG0536	GTPase involved in cell partioning and DNA repair	Replication, recombination and repair [L]	0.70
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.70
COG0676	D-hexose-6-phosphate mutarotase	Carbohydrate transport and metabolism [G]	0.70
COG2017	Galactose mutarotase or related enzyme	Carbohydrate transport and metabolism [G]	0.70
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	0.70
COG0830	Urease accessory protein UreF	Posttranslational modification, protein turnover, chaperones [O]	0.70
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.70
COG1042	Acyl-CoA synthetase (NDP forming)	Energy production and conversion [C]	0.70
COG1427	Chorismate dehydratase (menaquinone biosynthesis, futalosine pathway)	Coenzyme transport and metabolism [H]	0.70
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.70
COG1678	Putative transcriptional regulator, AlgH/UPF0301 family	Transcription [K]	0.70
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.70
COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme	Cell wall/membrane/envelope biogenesis [M]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.31 %
Unclassified	root	N/A	31.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.31 %
Unclassified	root	N/A	31.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.61 %
Unclassified	root	N/A	31.69 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.69 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	11.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.56 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	7.04 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.69 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	9.15 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.63 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.23 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.41 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.41 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.70 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.70 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.63 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2.11 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.11 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	1.41 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.70 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.70 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.70 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	0.70 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.70 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.70 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.63 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2.11 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1.41 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.70 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	0.70 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.70 %
Candidatus Competibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae	0.70 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.70 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.70 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.70 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.63 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2.11 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1.41 %
Syntrophaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	0.70 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.70 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.70 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.70 %
unclassified Methylococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae	0.70 %
Candidatus Competibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae	0.70 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.70 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.63 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2.11 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1.41 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.70 %
unclassified Syntrophaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae	0.70 %
Methylococcaceae bacterium NSP1-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium NSP1-1	0.70 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.70 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.70 %
Candidatus Competibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae	0.70 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.70 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.63 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2.11 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1.41 %
Syntrophaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium	0.70 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.70 %
Methylococcaceae bacterium NSP1-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium NSP1-1	0.70 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.70 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.70 %
Candidatus Competibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae	0.70 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.70 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10284154	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300001867\|JGI12627J18819_10244872	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300002245\|JGIcombinedJ26739_101039081	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	705	Open in IMG/M
3300002906\|JGI25614J43888_10001962	All Organisms → cellular organisms → Bacteria	6270	Open in IMG/M
3300002906\|JGI25614J43888_10046290	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300002906\|JGI25614J43888_10059786	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300002906\|JGI25614J43888_10061728	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300002906\|JGI25614J43888_10116320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	697	Open in IMG/M
3300002910\|JGI25615J43890_1023738	Not Available	1011	Open in IMG/M
3300002914\|JGI25617J43924_10032102	Not Available	1872	Open in IMG/M
3300005332\|Ga0066388_100595206	All Organisms → cellular organisms → Bacteria	1729	Open in IMG/M
3300005332\|Ga0066388_102013505	Not Available	1036	Open in IMG/M
3300005332\|Ga0066388_102460102	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300005332\|Ga0066388_107654944	Not Available	541	Open in IMG/M
3300005406\|Ga0070703_10451114	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300005440\|Ga0070705_101560000	Not Available	555	Open in IMG/M
3300005468\|Ga0070707_101084954	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300005471\|Ga0070698_100011562	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	9365	Open in IMG/M
3300005518\|Ga0070699_100723865	Not Available	909	Open in IMG/M
3300005602\|Ga0070762_10079829	All Organisms → cellular organisms → Bacteria → Proteobacteria	1858	Open in IMG/M
3300005764\|Ga0066903_100408540	All Organisms → cellular organisms → Bacteria	2239	Open in IMG/M
3300005764\|Ga0066903_101170105	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300005764\|Ga0066903_102738634	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300006893\|Ga0073928_10003455	All Organisms → cellular organisms → Bacteria	24933	Open in IMG/M
3300006893\|Ga0073928_10006374	All Organisms → cellular organisms → Bacteria	15916	Open in IMG/M
3300006893\|Ga0073928_10019934	All Organisms → cellular organisms → Bacteria → Proteobacteria	6944	Open in IMG/M
3300006893\|Ga0073928_10062842	All Organisms → cellular organisms → Bacteria	3269	Open in IMG/M
3300010043\|Ga0126380_10048133	All Organisms → cellular organisms → Bacteria	2284	Open in IMG/M
3300010043\|Ga0126380_11653661	Not Available	573	Open in IMG/M
3300010048\|Ga0126373_10205690	All Organisms → cellular organisms → Bacteria → PVC group	1911	Open in IMG/M
3300010048\|Ga0126373_10522898	Not Available	1232	Open in IMG/M
3300010048\|Ga0126373_11271928	Not Available	802	Open in IMG/M
3300010339\|Ga0074046_10633193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	631	Open in IMG/M
3300010360\|Ga0126372_13129622	All Organisms → cellular organisms → Archaea	514	Open in IMG/M
3300010361\|Ga0126378_11992092	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300010366\|Ga0126379_11129926	Not Available	889	Open in IMG/M
3300010376\|Ga0126381_100115981	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3455	Open in IMG/M
3300010376\|Ga0126381_100165007	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	2925	Open in IMG/M
3300010376\|Ga0126381_100220586	All Organisms → cellular organisms → Bacteria	2549	Open in IMG/M
3300010376\|Ga0126381_100304395	All Organisms → cellular organisms → Bacteria	2184	Open in IMG/M
3300010376\|Ga0126381_100732584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1416	Open in IMG/M
3300010398\|Ga0126383_10816792	Not Available	1016	Open in IMG/M
3300010937\|Ga0137776_1575977	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300012181\|Ga0153922_1097134	Not Available	669	Open in IMG/M
3300012205\|Ga0137362_10239349	Not Available	1566	Open in IMG/M
3300012361\|Ga0137360_11671055	Not Available	542	Open in IMG/M
3300012362\|Ga0137361_10665528	Not Available	952	Open in IMG/M
3300012971\|Ga0126369_10453358	All Organisms → cellular organisms → Bacteria	1332	Open in IMG/M
3300012971\|Ga0126369_11159286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	862	Open in IMG/M
3300016270\|Ga0182036_10954486	Not Available	705	Open in IMG/M
3300016270\|Ga0182036_11150973	All Organisms → cellular organisms → Bacteria → PVC group	644	Open in IMG/M
3300016319\|Ga0182033_10104385	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2092	Open in IMG/M
3300016341\|Ga0182035_10902074	Not Available	780	Open in IMG/M
3300016357\|Ga0182032_10737198	Not Available	829	Open in IMG/M
3300016404\|Ga0182037_11349030	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300016422\|Ga0182039_11771448	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300016445\|Ga0182038_10448083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1092	Open in IMG/M
3300016445\|Ga0182038_10716100	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300016445\|Ga0182038_10962722	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	754	Open in IMG/M
3300017972\|Ga0187781_10874307	Not Available	654	Open in IMG/M
3300017975\|Ga0187782_10199095	Not Available	1498	Open in IMG/M
3300018062\|Ga0187784_10746298	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300018062\|Ga0187784_11611219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	514	Open in IMG/M
3300020580\|Ga0210403_10344836	All Organisms → cellular organisms → Bacteria → Proteobacteria	1219	Open in IMG/M
3300020582\|Ga0210395_10514204	Not Available	901	Open in IMG/M
3300021046\|Ga0215015_10825925	All Organisms → cellular organisms → Bacteria	2569	Open in IMG/M
3300021088\|Ga0210404_10262555	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300021171\|Ga0210405_10027607	All Organisms → cellular organisms → Bacteria	4562	Open in IMG/M
3300021171\|Ga0210405_10669363	Not Available	804	Open in IMG/M
3300021178\|Ga0210408_10396852	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1099	Open in IMG/M
3300021178\|Ga0210408_11046352	Not Available	630	Open in IMG/M
3300021358\|Ga0213873_10030379	Not Available	1337	Open in IMG/M
3300021361\|Ga0213872_10002939	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	9666	Open in IMG/M
3300021361\|Ga0213872_10003591	All Organisms → cellular organisms → Bacteria	8528	Open in IMG/M
3300021361\|Ga0213872_10208083	Not Available	836	Open in IMG/M
3300021361\|Ga0213872_10215667	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	819	Open in IMG/M
3300021361\|Ga0213872_10248688	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium	749	Open in IMG/M
3300021372\|Ga0213877_10016032	Not Available	1967	Open in IMG/M
3300021372\|Ga0213877_10178762	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300021372\|Ga0213877_10185803	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300021384\|Ga0213876_10004934	All Organisms → cellular organisms → Bacteria	7388	Open in IMG/M
3300021403\|Ga0210397_10648183	Not Available	809	Open in IMG/M
3300021420\|Ga0210394_11430398	Not Available	587	Open in IMG/M
3300021432\|Ga0210384_10353789	Not Available	1323	Open in IMG/M
3300021439\|Ga0213879_10012275	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1898	Open in IMG/M
3300021439\|Ga0213879_10131506	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	717	Open in IMG/M
3300021444\|Ga0213878_10014138	All Organisms → cellular organisms → Bacteria	2878	Open in IMG/M
3300021444\|Ga0213878_10077543	Not Available	1329	Open in IMG/M
3300021444\|Ga0213878_10089672	All Organisms → cellular organisms → Bacteria → Proteobacteria	1239	Open in IMG/M
3300021444\|Ga0213878_10156978	Not Available	945	Open in IMG/M
3300021444\|Ga0213878_10289447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	701	Open in IMG/M
3300021479\|Ga0210410_10038359	All Organisms → cellular organisms → Bacteria	4164	Open in IMG/M
3300021559\|Ga0210409_10296409	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1458	Open in IMG/M
3300021560\|Ga0126371_12182996	Not Available	668	Open in IMG/M
3300022557\|Ga0212123_10000358	All Organisms → cellular organisms → Bacteria	155119	Open in IMG/M
3300022557\|Ga0212123_10000552	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	120067	Open in IMG/M
3300026304\|Ga0209240_1006747	All Organisms → cellular organisms → Bacteria	4323	Open in IMG/M
3300026551\|Ga0209648_10129238	All Organisms → cellular organisms → Bacteria	2025	Open in IMG/M
3300027609\|Ga0209221_1007903	All Organisms → cellular organisms → Bacteria	2722	Open in IMG/M
3300027648\|Ga0209420_1160870	Not Available	611	Open in IMG/M
3300027908\|Ga0209006_10373269	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	1206	Open in IMG/M
3300028047\|Ga0209526_10091839	Not Available	2137	Open in IMG/M
3300028906\|Ga0308309_10007712	All Organisms → cellular organisms → Bacteria	6600	Open in IMG/M
3300030923\|Ga0138296_1323052	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300031057\|Ga0170834_104246311	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300031679\|Ga0318561_10806076	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300031718\|Ga0307474_10016139	All Organisms → cellular organisms → Bacteria	5413	Open in IMG/M
3300031718\|Ga0307474_10024226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4429	Open in IMG/M
3300031718\|Ga0307474_10045278	All Organisms → cellular organisms → Bacteria → Proteobacteria	3246	Open in IMG/M
3300031718\|Ga0307474_10062429	All Organisms → cellular organisms → Bacteria	2759	Open in IMG/M
3300031718\|Ga0307474_10164782	Not Available	1677	Open in IMG/M
3300031718\|Ga0307474_11134782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae	618	Open in IMG/M
3300031718\|Ga0307474_11229232	Not Available	592	Open in IMG/M
3300031753\|Ga0307477_10147874	All Organisms → cellular organisms → Bacteria	1639	Open in IMG/M
3300031753\|Ga0307477_10280356	Not Available	1152	Open in IMG/M
3300031753\|Ga0307477_10368465	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300031753\|Ga0307477_10784983	Not Available	633	Open in IMG/M
3300031754\|Ga0307475_10290519	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M
3300031754\|Ga0307475_10600792	Not Available	881	Open in IMG/M
3300031754\|Ga0307475_11090413	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300031823\|Ga0307478_10043559	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	3297	Open in IMG/M
3300031823\|Ga0307478_10089139	All Organisms → cellular organisms → Bacteria	2369	Open in IMG/M
3300031823\|Ga0307478_10176466	All Organisms → cellular organisms → Bacteria	1708	Open in IMG/M
3300031823\|Ga0307478_10293295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium NSP1-1	1330	Open in IMG/M
3300031890\|Ga0306925_10101913	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	3056	Open in IMG/M
3300031910\|Ga0306923_10628261	All Organisms → cellular organisms → Bacteria	1203	Open in IMG/M
3300031946\|Ga0310910_10499938	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	965	Open in IMG/M
3300031954\|Ga0306926_10221559	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2348	Open in IMG/M
3300031954\|Ga0306926_10591912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1355	Open in IMG/M
3300031962\|Ga0307479_10214487	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1897	Open in IMG/M
3300031962\|Ga0307479_10247588	All Organisms → cellular organisms → Bacteria	1759	Open in IMG/M
3300031962\|Ga0307479_10451809	Not Available	1269	Open in IMG/M
3300031962\|Ga0307479_11220702	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300031962\|Ga0307479_11689891	Not Available	587	Open in IMG/M
3300031962\|Ga0307479_11970674	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300032001\|Ga0306922_10883678	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300032174\|Ga0307470_10684363	Not Available	779	Open in IMG/M
3300032261\|Ga0306920_100985268	All Organisms → cellular organisms → Bacteria → PVC group	1228	Open in IMG/M
3300032261\|Ga0306920_102395448	Not Available	729	Open in IMG/M
3300032261\|Ga0306920_104086982	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.37%
Host-Associated	Host-Associated	5.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.44%
Aquatic	Environmental → Aquatic	4.93%
Plants	Host-Associated → Plants	4.93%
Fungi	Host-Associated → Fungi	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.44%
Thermal Springs	Environmental → Aquatic → Thermal Springs	4.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.23%
Roots	Host-Associated → Plants → Roots	0.70%
Mycelium	Host-Associated → Fungi → Mycelium	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.13%
Loam	Environmental → Terrestrial → Soil → Loam	14.79%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	4.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.23%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.52%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.70%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.27%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.34%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	4.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.23%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.52%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.70%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.70%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	17.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.56%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	7.04%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.34%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.93%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	4.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.23%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.82%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.82%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.41%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.70%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.70%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.70%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_102841542	3300001593	Forest Soil	GAYLNGYVTDEQRSRRPIFIATLRAVASWLFFRVAHSLRINSDMLVVRALKNSQLTDGESHVTYGTGH*
JGI12627J18819_102448721	3300001867	Forest Soil	RYVTDEQRSRRPIFIATLRAVASWLFFRVAHSLRINSDMLVVSASAARTALKNSQLSDGESHVIYGTGH*
JGIcombinedJ26739_1010390811	3300002245	Forest Soil	ATAGREEGAYLNRYVTDEQRSRRPIFIATPGRGQLAFFRVAHSSRINSDMLVVRALKNSQLADGESHVIYGTGH*
JGI25614J43888_100019629	3300002906	Grasslands Soil	VTDEQRRRRPIFIATLRAVASWLFFHVARSLRINSDMLVARALKNSQLTDGESNVIYGTGHQQRAEKKTSTLSGA*
JGI25614J43888_100462901	3300002906	Grasslands Soil	VTDEQRSRRPIFIATLRAVASWLFFCVAHSLPINSDMLVARALKNSQLIRQLPDE
JGI25614J43888_100597861	3300002906	Grasslands Soil	LNRYVTDEQRSRRPIFIATLRAVASWLFFCVAHSLPINSDMLVARALKNSQLIRQLPDE
JGI25614J43888_100617281	3300002906	Grasslands Soil	GGRGTAAGPFFIATLRAVASWLFFCVAHSLRINLDMLVARALKNSQLIRPLPDESHVIYGTGH*
JGI25614J43888_101163201	3300002906	Grasslands Soil	IATLRAVASWLFFCVAHSSRINSDMLVASASAARTALKNSQLIRPLPDESHLIYGTGH*
JGI25615J43890_10237381	3300002910	Grasslands Soil	VTDEQRRRRPIFIATLRAVASWLFFHVARSLRINSDMLVARALKNSQLTDGESNVIYGTGHQQRAEKKTST
JGI25617J43924_100321023	3300002914	Grasslands Soil	VTDEQRRRRPIFIATLRAVASWLFFHVARSLRINSDMLVARALKNSQLTDGESHVIYGTGHQQRAEKKTSTLSGA*
Ga0066388_1005952062	3300005332	Tropical Forest Soil	VTDEQRSRRPIFIATLRAAASWLFFRVARSLRINLDMRVARVLKNSQLTCGERHAISGTGH*
Ga0066388_1020135053	3300005332	Tropical Forest Soil	YLKRYVTDEQRSRRPIFIATLRAGASWLFFCVAHSSRINSDMLVVRALKNSQLADGESHAIYGTGH*
Ga0066388_1024601021	3300005332	Tropical Forest Soil	YVTDEQRSRRPIFNATLRAAASWLFFCVARSLRIDSDMLVVTASPARTALKNSQLTCGESHAISGTGH*
Ga0066388_1076549442	3300005332	Tropical Forest Soil	REEGAYLNRYVTDEQRSRRPIFNATLRAAASWLFFRVARSLRIASDMLVARALKNSQLTCGERHAISGTGH*
Ga0070703_104511141	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	SIKVGRDVTDEQRSRRPIFIATLWAAAGWLFFRVARSSRIGLDMLVARALKNSQLTCGERHAISGTGHLSTDECLARPEADT*
Ga0070705_1015600001	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	KVGRDVTDEQRSRRPIFIATLWAAAGWLFFRVARSSRIGLDMLVARALKNSQLTCGERHAISGTGHLSTDECLARPEADT*
Ga0070707_1010849542	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	KEGAYLNRYVTDEQRSRRPIFNATLRAAAGWLFFCVARSLRIDSDMLVAHALKNSQLTCGERHAISRKGD*
Ga0070698_1000115628	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VGRDVTDEQRSRRPIFIATLWAAAGWLFFRVARSSRIGLDMLVARALKNSQLTCGERHAISGTGH*
Ga0070699_1007238651	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	TDEQRGRRPIFIATLWAAAGWLFFRVARSSRIGLDMLVARALKNSQLTCGERHAISGTGH
Ga0070762_100798293	3300005602	Soil	NRYVTDEQRSRRPIFNATLRAAAGWLFFRVARSLRINLDMLVARALKNSQLTCGERHAISGTGH*
Ga0066903_1004085401	3300005764	Tropical Forest Soil	QRSRRPIFIATLRAAASWPFFRVARSLRINSDRLVARALKNSQLTCGERHVISGTGH*
Ga0066903_1011701052	3300005764	Tropical Forest Soil	VTGEQRGRRPIFIATLRAVTSWLFFCVAHSLRIDSDILVARALKNGQLTDGESQAIYGTGHLNGDFNEEGLVLLT*
Ga0066903_1027386343	3300005764	Tropical Forest Soil	RREEGAYLNRYVTDEQRSRRPTFIATLWAVAGWLFFRVARSLRIDLDMLVACFLKNSQLTRGERYAISGTGH*
Ga0073928_100034551	3300006893	Iron-Sulfur Acid Spring	PIPRPRDSRRPIFIATLRAVASWLFFRVAHSSRINSDMLVVRALKNSQLADRESHAIYGTGH*
Ga0073928_100063741	3300006893	Iron-Sulfur Acid Spring	PIPRPRDSRRPIFIATLRAVASWLFFRVAHSSRINSDMLVACASAARTALKNSQLTPRPRGESHAIYGTGH*
Ga0073928_100199344	3300006893	Iron-Sulfur Acid Spring	MNRYVTDEQRNRRPIFIATLRAMASWLFFCVAHSSRINSDMLVVRALKNSQLTDGESHVIHEIGH*
Ga0073928_100628421	3300006893	Iron-Sulfur Acid Spring	GSSARREEGAYLDRYVTDEQRSSRPIFNATLRAAASWLFFPRCSLDRYDADSGAARALKNSQLTYGETQGI*
Ga0126380_100481334	3300010043	Tropical Forest Soil	KLIPQARDSRGLIFIATLPAVASWLFFRVAHSSRINLDMLVVRALKNSQLTGRESHAIYGTGH*
Ga0126380_116536612	3300010043	Tropical Forest Soil	VGGCKRGRRPIFIATLRAAASWLFFRVARSSRIDSDMLVARALKNSQLTCGERHAISGTGH*
Ga0126373_102056902	3300010048	Tropical Forest Soil	GAYLNRYVTDEQRSRRPIFIATLRAVASWLFFCVAHSSRINSDMLVVRALKNSQLADGESHAIYGTGH*
Ga0126373_105228981	3300010048	Tropical Forest Soil	VTDEQRGRRPIFIATLRAVAGWRFFGVAHSLRINADMLVVRALKNRQLDDGESHVIYGTGH*
Ga0126373_112719283	3300010048	Tropical Forest Soil	KLIPQARDSRGLIFIATLRAVASWLFFRVAHSSRINLDMLVVRALKNSQLTGLESHAIYGTGH*
Ga0126373_117334062	3300010048	Tropical Forest Soil	LICNLSSFKTLDGIDNIVVTDEQRSRRPIFIATLWAVASWLFFRVARSSRIDLDMLVARALKNSQLTCGE
Ga0074046_106331932	3300010339	Bog Forest Soil	YLIRYVTDEQRSRWPIFNATLRAAASWLFFRVARSLRIDSDMLVARALKNSQLTCGERHAISGTGH*
Ga0126372_131296221	3300010360	Tropical Forest Soil	EQRGRRPIFIATLRAVTSWLFFCVAHSLRIDSDMLVARALKNGQLTDGESHAIYGTGHLNGDFNEEGLVLLT*
Ga0126378_119920922	3300010361	Tropical Forest Soil	REEGAYLERYVTDEQRSRRPIFIATLRAAASWLFFRVARSSRIDLDMIVARALKNSQLTCGEGMLISGTGH*
Ga0126379_111299262	3300010366	Tropical Forest Soil	NRYVTDEQRSRRPIFIATLRAVASWLFFCVAHSSRINSDMLVVRALKNSQLADGESHAIYGTGH*
Ga0126381_1001159811	3300010376	Tropical Forest Soil	RREEGAYLNRYVTDEQRSRRPIFIATLWAAASWPFFRVARSLRIGLDMLVARALKNSQLTCGETHAISRTGH*
Ga0126381_1001650075	3300010376	Tropical Forest Soil	PARREEGAYLNGYVTDEQHSRRPIFIATLWAAASWLFFGVARSSRIDLDTLVARALKNNQLTPRPRGERHAYSRTGH*
Ga0126381_1002205864	3300010376	Tropical Forest Soil	GPPARREEGAYLNRYVTDEQRSRRPIFIATLWAAASWLFFHIARSLRIGSDMLVARALKNSQLTCGKRHAISGTGH*
Ga0126381_1003043951	3300010376	Tropical Forest Soil	QRSRRPIFIATLWAVASWLFFRVARSSRIDLDMLVARALKNSQLTCGERYAISGTGH*
Ga0126381_1007325841	3300010376	Tropical Forest Soil	ARREEGAYLKRYVTDEQRSRRPIFIATLRAAASWPFFRVARSLRINSDRLVARALKNSQLTCGERHAISGIGH*
Ga0126383_108167921	3300010398	Tropical Forest Soil	YVTNEQRSRRPIFIATLWAAASWLFFRVARSSRIGSDMLVARVLKNSQLTCGERHAISGTGH*
Ga0137776_15759771	3300010937	Sediment	EQRSRRPIFIATLRAVASWPFFRVARSLRINLDMLVARALKNSQLIRQLPDESHAIHRTGH*
Ga0153922_10971342	3300012181	Attine Ant Fungus Gardens	YLNGYVTDEQRSRRPIFIATLRTVARWLFFRVSRSLRIGSEMLVARALKNSHLTYGERHAISGTGH*
Ga0137362_102393491	3300012205	Vadose Zone Soil	MEVGRDVTDEQHSRRPIFIATLRAAASWLFFRVARSSRIGLDMLVVTASPAWTALKNSQLTCGERHAISETGH*
Ga0137360_100344643	3300012361	Vadose Zone Soil	MERDATDEQRGRRPIFIATLWAAAGWLFFRVARSSRIGLDMLVAGALKNSQLTCGERHAISGTGH*
Ga0137360_116710552	3300012361	Vadose Zone Soil	RAVASWLFFCVAHSSRIDSDMLVVRALKNSQLIRQLPDESHVIYGTGHELWSRFRHSRT*
Ga0137361_106655281	3300012362	Vadose Zone Soil	RNVKMERDATDEQRSRRPIFIATPWATSSWLFFRVARSLRIDLDMLVARALKNSQLTCGERYAISGTGH*
Ga0126369_104533582	3300012971	Tropical Forest Soil	EEGAYLKRYVTDEQRSRRPIFIATLRAVASWPFFCVARSLRIDSDMLVARALKNSQLTGGERHAISGTGH*
Ga0126369_111592862	3300012971	Tropical Forest Soil	DEQRSRRPIFIATLRAAASWLFFRVARSLRINSDRLVVTASPARTALKNSQLTCGERHAISGTGHY*
Ga0182036_109544862	3300016270	Soil	PPARREEGAYLNGYVTDEQRSRRPIFIATLWAAASWLLFRVARSSRIDLDMIVARALKSGQLTCGERHAISATVH
Ga0182036_111509732	3300016270	Soil	DEQRSRRPIFIATLWAVASWLFFRVARSLRINLDMLVVTASPARTALKNSQLTCGERYAISGTGH
Ga0182033_101043851	3300016319	Soil	EEGAYLKRYVTDEQRSRRPIFNATLWAAAGWLFFRVARSLRIDLDMLVARALKNSQLTCGQWYAISATGH
Ga0182035_109020741	3300016341	Soil	YLKRYVTDEQRARLPIFIATRWAAAGWLFFGVARSSRIDSDMLVTRVLKNCQLVCGERHAIPRTGH
Ga0182032_107371982	3300016357	Soil	VTDEQRSRRPIFIATLWAAASWLFFGVARSSRIDSDTLVTRVLKNSQLACGERHAISRTG
Ga0182037_113490301	3300016404	Soil	TDEQRSRPPIFIATLRAAASWLFFRVARSLRIDLDMLVVRALKNSQLIRPRPDETQGI
Ga0182039_117714482	3300016422	Soil	CDQNGPPARREEGAYLERYVTDEQRSRRPIFIATPWAAAGWLFFRVARSSRIGSDMLVARALENSQLTRQRPDERRAISGTGH
Ga0182038_104480831	3300016445	Soil	DEQRSRRPIFIATLRAAASWLFFRVARSSRIDLDTLVARALKNSQLTCGEKHAISGTGH
Ga0182038_107161001	3300016445	Soil	YVTDEQRRRRPIFIATLRAVASWLFFRVTHSSRINLDMLVVRALKNSQLTDGESHVIYGTGH
Ga0182038_109627222	3300016445	Soil	CDQNGPPARREEGAYLERYVTDEQRSRRPIFIATPWAAAGRLFFRVARSSRIGSDMLVARALENSQLTRQRPDERRAISGTGH
Ga0187781_108743071	3300017972	Tropical Peatland	RPIFIATLRAVASLRFFRVALSLRIDSDRLVVRALKNRKLAGGESHVIYGTGH
Ga0187782_101990951	3300017975	Tropical Peatland	GGKEGAYLDRYVTDKQRSRRPIFIATLRAVANWLIFRFAHSLRINSDMLVVRALKISQLTDGESYAFSRTGH
Ga0187784_107462981	3300018062	Tropical Peatland	NGPPARREEGAYLDRYVTDEQRRRRPIFIATLRAVAGWRFFRVAPSLRINSDMLVVRALKNRQLAGGESQVIYGTGH
Ga0187784_116112192	3300018062	Tropical Peatland	EEGAYLDRYVTDEQRRRRPIFIATLRAVAGWRFFRVAHSLRINSDMLVVRALKNRQLAGGESQVIYGTGH
Ga0210403_103448363	3300020580	Soil	RSGASRTALKLVRDATDEQRSRRPIFIATLRAAASWLFFRVARSLRIDLDMLVARALKNSQLTCGERHVISGTGH
Ga0210395_105142041	3300020582	Soil	DMSGAYLHRYVTDEPRSRRPIFIATLRAVASWLFFRVARSLRINSDMLVVSASAARTALKNSQLTDGESHAICGTGH
Ga0215015_108259252	3300021046	Soil	MCIRDRPIFIATLRAVASWLFFRVALSSRINSDMLVVPPASLREALWAGRALKNSQLTDGESHVIYGTGHWE
Ga0210404_102625552	3300021088	Soil	RPIFIATLRAVVSWLFFRVARSSRINSDMLVVRALKNSQLTDGESHVIYETGHQISNTGFLLRTNS
Ga0210405_100276075	3300021171	Soil	SGPYLNRYVTDEPRSRRPIFIATLRAVASWLFFRVARSLRINSDMLVVSASAARTALKNSQLTDGESHAICGTGH
Ga0210405_106693632	3300021171	Soil	NRYVTDEQRSRRPIFIATLRAVASWLFFRVAHSLRINSDMLVVRALKNSQLTDGESHVIYGTGHW
Ga0210408_103968522	3300021178	Soil	VGRDVTDEQRSRRPIFIATLWAAASWLFFRVARSLRIDLDMLVARALKNSQLTRGERHAISGTGH
Ga0210408_110463521	3300021178	Soil	VTDEQRSRRPIFIATLRAVASWLFFCVAHSLRIDADMLVISASAARTVLKNSQLTDGESHAIYGTGHKKDLR
Ga0213873_100303791	3300021358	Rhizosphere	EEGTYLDRYVTDEQRSRRPIFIATLRAVAIWLIFRVAHSLRINADMPVVRALKISQMTDGESYAISRTGH
Ga0213872_100029392	3300021361	Rhizosphere	MVRDVTDEQRSRRPIFIATLRAAASWPFFRVARSLRINSDMRVVSASPARIALKNSQLTCGERHAISGTGH
Ga0213872_100035911	3300021361	Rhizosphere	MVRDVTDEQRSRRPIFIATLRAAASWPFFRVARSLRINSDRRVVSASPARTALKNSQLTCGERHAISGTGH
Ga0213872_102080832	3300021361	Rhizosphere	VTDEQRSRRPIFNATLRAAVSWLFFRVAHSLRINSDMLVVRALKNSQLTGGDGTII
Ga0213872_102156672	3300021361	Rhizosphere	RRPIFIATLRAAAGWLFFRVTHSSRINADMLVARALKNGQLIRPWPDESHVISGTGH
Ga0213872_102486882	3300021361	Rhizosphere	VTDEQRSRRPIFIATLRAAASWLFFRVARSLRINSDMLVVTASPARTALKNSQLTCGERHAISGTGH
Ga0213877_100160324	3300021372	Bulk Soil	TDEQRSRRPIFIATLRAAASWPFFRVARSLRINSDRRVVSASPARTALKNSQLTCGERHAISGTGH
Ga0213877_101787621	3300021372	Bulk Soil	AYLKRYVTDEQRSRRPIFIATLRAVASWLFFRVACSLRINSDMLVLGASAARTALKNSQLTDGESHVIYGRGHEGHV
Ga0213877_101858032	3300021372	Bulk Soil	VTDDQRGRRHIFIATLRAVASWLFFLRLGGSLRINSDMLVARALKNSQLTDGESHITHGTGH
Ga0213876_100049346	3300021384	Plant Roots	VTDEQRGRLPIFNATLRAVPSWLFFRVAHSLRINSDMLVVRALKNSQLGGGERPVIS
Ga0210397_106481831	3300021403	Soil	RYVTDEPRSRRPIFIATLRAVASWLFFRVARSLRINSDMLVVSASAARTALKNSQLTDGESHAICGTGH
Ga0210394_114303981	3300021420	Soil	RPIFIATLLSVASWLFFRVARSLRINSDMLVVSASAARTALKNSQLSDGESHVIYGTGH
Ga0210384_103537892	3300021432	Soil	TLFKPTLWAVASWLIFCVAHSLRIDSDMLVVRALKNSQLIRRLPDESHAIYGTGH
Ga0213879_100122751	3300021439	Bulk Soil	RYVTDEQRSRRPIFIATLRAAASWLFFRVARSLRINSDMLVVTASPARTALKNSQLTCSERHAISGTGH
Ga0213879_101315061	3300021439	Bulk Soil	RLIFIATLRAVVGWLFFRVAHSSRINSDMLVVRALKNSQLTDGESHAIYGTGH
Ga0213878_100141381	3300021444	Bulk Soil	TDEQRRRRPIFSATLRAVASWLFFGVARSLRSNSDMLVARALKNSQLTDGESHVIYGTGH
Ga0213878_100775433	3300021444	Bulk Soil	TEEQRRRRPIFSATLRAGAGWRFFRVALSSSINSDMLVVRALKNRQLADGESQVIYGAGH
Ga0213878_100896721	3300021444	Bulk Soil	VTEKQRSRRPIFIATLRAVAGWLFFRVTHSSRINADMLVARALKNSQLTCGESYAISGTG
Ga0213878_101569781	3300021444	Bulk Soil	YLKRYVTDEQRSRRPIFIATLRAAASWPFFRVARSLRINSDTLVVTASPARTALKNSQLTCGERHAISGTGH
Ga0213878_102894472	3300021444	Bulk Soil	QRSRRPIFNATLRAVASWLFFGVARSLRINSDMLVARALKNSQLTDGESRVIYGTGH
Ga0210410_100383591	3300021479	Soil	PIFIATLRVVASWLFFDVARSLRIDADMLVARALKNSQLIRQLPGESHAIYGTGLGQSDE
Ga0210409_102964091	3300021559	Soil	AYLNRYVTDEQRSRRPIFIATLRAVVSWLFFRVARSSPINSDMLVVRALKNSQLTAGESHAIYETGH
Ga0126371_121829961	3300021560	Tropical Forest Soil	QNGPSARREEGAYLDRYVTDEQRSRRPIFIATLRAVASWLFFGVAHSLRINSDMLVVRALKNSQLADGESHAIYGTGH
Ga0212123_1000035835	3300022557	Iron-Sulfur Acid Spring	MNRYVTDEQRNRRPIFIATLRAMASWLFFCVAHSSRINSDMLVVRALKNSQLTDGESHVIHEIGH
Ga0212123_1000055245	3300022557	Iron-Sulfur Acid Spring	LRSKWAVGKARGGRISDRYVTDEQRSRRPIFIATLQAVASWLFFCVAHSLRINSDMLVVRALKNSQLTDGESHVIYGTGH
Ga0209240_10067473	3300026304	Grasslands Soil	VTDEQRRRRPIFIATLRAVASWLFFHVARSLRINSDMLVARALKNSQLTDGESNVIYGTGHQQRAEKKTSTLSGA
Ga0209648_101292381	3300026551	Grasslands Soil	DEQRSRRPIFIATLRAVASWLFFRVAHSSRINSDMLVVRALKNSQLIRPLPDESHVI
Ga0209221_10079034	3300027609	Forest Soil	LRSKWAAGRREEGAYLNGYVTDEQRSRRPIFIATLRAVASWLFFRVAHSLRINSDMLVVRALKNSQLTDGESHVIYGTGY
Ga0209420_11608702	3300027648	Forest Soil	SRRPIFIATLRAVASWLFFCVAHSSRINSDMLVVPALKNSQLTDGEGHVIYGTGH
Ga0209006_103732693	3300027908	Forest Soil	RRPIFIATLRAVASWRFLRVAHSLRINADMLVVRALKNRQLAGGESHAIYGTGHWCTVLVMLEVH
Ga0209526_100918391	3300028047	Forest Soil	ATDEQRGRRPIFMATLRAAASWPFFCVARSSRMNLHMLVTRALKNNQLTSGESPAISRTG
Ga0308309_100077121	3300028906	Soil	GAYLNRYVTDEQRSRRPIFIATLRAVASWLFFGVARSLRINLDMLAVSASAARTALKNRQLIRQLPDESHAIYGTGH
Ga0138296_13230521	3300030923	Soil	IFIATLRAVASWLFFRVAHSSRINSDMLVASVSAARTALKNSQLIRQLPDESHVIYGTGH
Ga0170834_1042463111	3300031057	Forest Soil	VTDEQRSRRPIFIATLRAVASWLFFRVAHSSRINSDMLVDSASAPRTALKNSQLTDGESHVIYGTGH
Ga0318561_108060761	3300031679	Soil	REEGAYLNPYVTDEQRSRQPIFIATLWAVASWLFFCVARSSRIHPDMLVACVLKNSQLTCGERYAISGAGH
Ga0307474_100161391	3300031718	Hardwood Forest Soil	GTYLNGYVTDEQRSRRPVFIATLRAVASWLFFGVAHSSRMNSDMLVASASAARTALKNSQLIRQLPDASHVICGTGH
Ga0307474_100242266	3300031718	Hardwood Forest Soil	YVTDEQRSRRPIFIATLRAVASWLFFCVAHSLRINSDMLVVRALKNSQLIRQLPDESHAIYGTGH
Ga0307474_100452783	3300031718	Hardwood Forest Soil	VTDEQRSCRPIFIATLRAVASWLLFRVARSLRIDADMLVTRALKNSQLTDGESHVIYGTGHKP
Ga0307474_100624294	3300031718	Hardwood Forest Soil	RQLPDSRRPIFIATLRAGPVGCFSSATADHSSRINSDMLVAGATAARTALKNSQLIRQLPDESHVIYGTGHKLGGQVY
Ga0307474_101647821	3300031718	Hardwood Forest Soil	RYVTDEQRRRRPIFIATLRAVASWLFFRVARSLRIDADMLGVSASAARTALKNSQLADGESHAIYGTGH
Ga0307474_111347822	3300031718	Hardwood Forest Soil	RREEGAYLDRYVTDEQRSRRPIFIATLRAVAIWLIFRVAHSLRINSDMLVVRALKISQMADGESHAIYGTGH
Ga0307474_112292321	3300031718	Hardwood Forest Soil	IPRPRDRRRPIFIATLRAVASWLFFCVARSSRINSDMLVVSASAARTALKNNQLTDGESHVTHGTGH
Ga0307477_101478741	3300031753	Hardwood Forest Soil	EQRSRRPIFIATLRAVASWLFFRVARSLRIDSDMLVARALKNSQLTDGENHAIYGTGHYIERM
Ga0307477_102803562	3300031753	Hardwood Forest Soil	YLNRYVPDEQRSRRPIFIATLRAVVSWLFFRVAHSLRINLDMLVVRVLKNSQLTEGESHVIYGTGH
Ga0307477_103684652	3300031753	Hardwood Forest Soil	EQRSRRPIFIATLRAVASWLFFCVAHSSRINSDMPVVRALKNSQLTDGESHVIYGTGH
Ga0307477_107849832	3300031753	Hardwood Forest Soil	SAYLDRYVTDEQRSRRPIFIATLRAVAIWLIFRVAHSLRINSDMLVVRALKISQMADGESHAIYGTGH
Ga0307475_102905191	3300031754	Hardwood Forest Soil	TDEQRSRRPIFIATLRAVAGWLFFRVARSLRINADMLVARALKNSQLTDGESHAIYGTGH
Ga0307475_106007923	3300031754	Hardwood Forest Soil	TDEQRSRRPIFIATLRAVASWLLFRVAHSSRINSDMLVVRALKNSQLTDGESHVIYGTGH
Ga0307475_110904131	3300031754	Hardwood Forest Soil	DEQRSRRPIFIATLRAVASWLIFRVAHSLRINSDMLVVSASAARTALKISQLTDGESHAIYGTGH
Ga0307478_100435594	3300031823	Hardwood Forest Soil	FIATLRAVVSWLFFRVAHSSRINLDMIVVRALKNSQLIPRTRDESHVIYGTGHWYR
Ga0307478_100891393	3300031823	Hardwood Forest Soil	RQLPDSRRPIFIATLRAVASWLFFRVARSLRINSDMLVARALKNSQLFRQLPDESHVIHGTGH
Ga0307478_101764661	3300031823	Hardwood Forest Soil	TDEQRGRRPIFIATLRAVASWLFFRVARSSRINADMLVVSASAARTALKNSQLTDGESHAIYGTGH
Ga0307478_102932952	3300031823	Hardwood Forest Soil	PDSRRPIFIATLRAGPVGCFSSATADHSSRINSDMRVAGASAARTALKNSQLIRQLPDESHVIYGTGHKLGGQVY
Ga0306925_101019131	3300031890	Soil	QRSRQPIFIATLRAAASWPFFRVARSSRIDLDMLVARALKNSQLTCGERHVISRTGH
Ga0306923_106282613	3300031910	Soil	RRSEPDWQLEGAYLNRYVTDEQRSRRPIFIATLWAAASWLFFSVARSSRIGSDVLVARVLKNSQLTCGERHAISGTGH
Ga0310910_104999381	3300031946	Soil	SRRPIFIATPWAAAGWLFFRVARSSRIGSDMLVARALENSQLTRQRPDERRAISGTGH
Ga0306926_102215591	3300031954	Soil	YVTDEQHSRRFIFIATLWAAASWLFFGVARSSRIDSDMLVTRVLKNSQLACGERHAISRTGH
Ga0306926_105919121	3300031954	Soil	QNGPPARREEGAYLERYVTDEQRSRRPIFIATPWAAAGRLFFRVARSSRIGSDMLVARALENSQLTRQRPDERRAISGTGH
Ga0307479_102144873	3300031962	Hardwood Forest Soil	ESAYLNRYVTDEQRSRRPIFIATLWAAASWLFFRVARSLRIDLDMLVARALKNSQLTCGERHAISGTGH
Ga0307479_102475883	3300031962	Hardwood Forest Soil	RYVTDEQRSRRPIFIATLRAVASWLFFCVAHSSRINSDMLVLRALKNSQLTDGESHVIYGTGH
Ga0307479_104518091	3300031962	Hardwood Forest Soil	SRRPIFIATLRAVAGWLFFRVARSLRIDSDMLVARALKNSQLTDGESHVIYGTGHKP
Ga0307479_112207021	3300031962	Hardwood Forest Soil	SISESIRDPIPGPRDSRRPVFIATLRAVASWLFFRVARSLRIDPDMLVARALKNRQLTHGESHAIHGTGH
Ga0307479_116898912	3300031962	Hardwood Forest Soil	SLNRYVTDEQRRRRPIFIATLRAVASWLFFRVARSLRIDADMLGVSASAARTALKNSQLADGESHAIYGTGH
Ga0307479_119706741	3300031962	Hardwood Forest Soil	IATLRAVVSWLFFRVAHSSRINLDMIVVRALKNSQLIPRTRDESHVIYGTGHWYR
Ga0306922_108836781	3300032001	Soil	TDEQRRRRPIFIATLGAVASWLFFRVARSLRINLDMLVVRALKNSQLTDGESHVIYGTGH
Ga0307470_106843632	3300032174	Hardwood Forest Soil	NGPPARREEGAYLNRYVTDEQRSRRPIFIATLRAAASWLFFRVARSSHIDSDMLVARALKNSQLTCGERRAISGTGH
Ga0306920_1009852681	3300032261	Soil	EGAYLNRYVTDEQRSRRPIFIATLWAVASWLFFRVARSLRINLDMLVVTASPARTALKNSQLTCGERYAISGTGH
Ga0306920_1023954481	3300032261	Soil	ERSISDRYVTDEQRSRRPIFIATLRAVASWLFFRVARSLRINSDMLVARALKNSQLIRPWPGESHVSYGTGH
Ga0306920_1040869821	3300032261	Soil	PRDSRRPIFIATLRAVASWLFFRVARSLRIDSDMLVARALKNSQLTDGESHAIYGTGHEGGHV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052426

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences