Metagenome / Metatranscriptome Family F052234

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F052234
Family Type	Metagenome / Metatranscriptome
Number of Sequences	143
Average Sequence Length	45 residues
Representative Sequence	MRINIWIILAALLALLVITRYLQHDRDTERICADDPSASVCQR
Number of Associated Samples	94
Number of Associated Scaffolds	143

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	42.66 %
% of genes near scaffold ends (potentially truncated)	60.14 %
% of genes from short scaffolds (< 2000 bps)	86.01 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.839 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.077 % of family members)
Environment Ontology (ENVO)	Unclassified (34.965 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.643 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 45.07% β-sheet: 0.00% Coil/Unstructured: 54.93%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 143 Family Scaffolds
PF05694	SBP56	4.90
PF04392	ABC_sub_bind	3.50
PF13442	Cytochrome_CBB3	2.80
PF00589	Phage_integrase	2.10
PF13460	NAD_binding_10	2.10
PF08734	GYD	2.10
PF13683	rve_3	1.40
PF05425	CopD	1.40
PF13924	Lipocalin_5	1.40
PF01595	CNNM	1.40
PF13545	HTH_Crp_2	1.40
PF00856	SET	1.40
PF01370	Epimerase	0.70
PF08241	Methyltransf_11	0.70
PF03972	MmgE_PrpD	0.70
PF13649	Methyltransf_25	0.70
PF13991	BssS	0.70
PF06823	DUF1236	0.70
PF00872	Transposase_mut	0.70
PF11154	DUF2934	0.70
PF05199	GMC_oxred_C	0.70
PF13701	DDE_Tnp_1_4	0.70
PF03480	DctP	0.70
PF02775	TPP_enzyme_C	0.70
PF00550	PP-binding	0.70

COG ID	Name	Functional Category	% Frequency in 143 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.50
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	2.10
COG1276	Putative copper export protein	Inorganic ion transport and metabolism [P]	1.40
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.70
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.70
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.84 %
Unclassified	root	N/A	39.16 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.84 %
Unclassified	root	N/A	39.16 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.84 %
Unclassified	root	N/A	39.16 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	43.36 %
Unclassified	root	N/A	39.16 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.16 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.06 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.16 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	14.69 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.69 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	3.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.16 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.69 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	3.50 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.10 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	2.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.16 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.69 %
Rhodovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum	3.50 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.10 %
Ancylobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Ancylobacter	2.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.16 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.69 %
unclassified Rhodovulum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum	3.50 %
Ancylobacter dichloromethanicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Ancylobacter → Ancylobacter dichloromethanicus	2.10 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.16 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.69 %
Rhodovulum sp. P5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. P5	3.50 %
Ancylobacter dichloromethanicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Ancylobacter → Ancylobacter dichloromethanicus	2.10 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.10 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101453182	Not Available	572	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10067001	Not Available	913	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10071032	Not Available	881	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10072757	Not Available	869	Open in IMG/M
3300000955\|JGI1027J12803_100822469	Not Available	811	Open in IMG/M
3300000955\|JGI1027J12803_102026655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
3300000956\|JGI10216J12902_100605564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	647	Open in IMG/M
3300000956\|JGI10216J12902_106427941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	660	Open in IMG/M
3300000956\|JGI10216J12902_118605368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	594	Open in IMG/M
3300004268\|Ga0066398_10043704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	879	Open in IMG/M
3300004633\|Ga0066395_10993062	Not Available	512	Open in IMG/M
3300005172\|Ga0066683_10727634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	585	Open in IMG/M
3300005187\|Ga0066675_10086517	All Organisms → cellular organisms → Bacteria	2036	Open in IMG/M
3300005332\|Ga0066388_100022756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5572	Open in IMG/M
3300005332\|Ga0066388_100327875	All Organisms → cellular organisms → Bacteria	2177	Open in IMG/M
3300005332\|Ga0066388_100869384	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300005332\|Ga0066388_101244161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Ancylobacter → Ancylobacter dichloromethanicus	1277	Open in IMG/M
3300005332\|Ga0066388_105048485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	670	Open in IMG/M
3300005332\|Ga0066388_105201120	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300005332\|Ga0066388_105523842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	640	Open in IMG/M
3300005332\|Ga0066388_107835811	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300005363\|Ga0008090_10169342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3262	Open in IMG/M
3300005445\|Ga0070708_100125057	All Organisms → cellular organisms → Bacteria	2376	Open in IMG/M
3300005451\|Ga0066681_10991507	Not Available	501	Open in IMG/M
3300005468\|Ga0070707_100086991	All Organisms → cellular organisms → Bacteria	3022	Open in IMG/M
3300005468\|Ga0070707_100357529	All Organisms → cellular organisms → Bacteria → Proteobacteria	1418	Open in IMG/M
3300005468\|Ga0070707_102176393	Not Available	522	Open in IMG/M
3300005471\|Ga0070698_100353420	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
3300005553\|Ga0066695_10111177	Not Available	1686	Open in IMG/M
3300005554\|Ga0066661_10223020	All Organisms → cellular organisms → Bacteria	1168	Open in IMG/M
3300005557\|Ga0066704_10266171	Not Available	1163	Open in IMG/M
3300005562\|Ga0058697_10089562	All Organisms → cellular organisms → Bacteria	1257	Open in IMG/M
3300005713\|Ga0066905_100376404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1143	Open in IMG/M
3300005713\|Ga0066905_100600611	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300005713\|Ga0066905_100817876	Not Available	809	Open in IMG/M
3300005713\|Ga0066905_101689207	Not Available	581	Open in IMG/M
3300005713\|Ga0066905_101995342	Not Available	538	Open in IMG/M
3300005764\|Ga0066903_100040050	All Organisms → cellular organisms → Bacteria	5510	Open in IMG/M
3300005764\|Ga0066903_101564721	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300005764\|Ga0066903_101706638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1199	Open in IMG/M
3300005764\|Ga0066903_101775004	Not Available	1177	Open in IMG/M
3300005764\|Ga0066903_103515277	Not Available	844	Open in IMG/M
3300005764\|Ga0066903_105907191	Not Available	642	Open in IMG/M
3300005764\|Ga0066903_106105978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	630	Open in IMG/M
3300005764\|Ga0066903_107165914	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M
3300005764\|Ga0066903_107872567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300005764\|Ga0066903_108948921	Not Available	507	Open in IMG/M
3300005764\|Ga0066903_109007017	Not Available	505	Open in IMG/M
3300006049\|Ga0075417_10089516	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1384	Open in IMG/M
3300006163\|Ga0070715_10121510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1246	Open in IMG/M
3300006796\|Ga0066665_11564997	Not Available	517	Open in IMG/M
3300006845\|Ga0075421_100348340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1790	Open in IMG/M
3300006845\|Ga0075421_102352272	Not Available	559	Open in IMG/M
3300006854\|Ga0075425_100289352	All Organisms → cellular organisms → Bacteria	1885	Open in IMG/M
3300006854\|Ga0075425_100324844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1771	Open in IMG/M
3300006871\|Ga0075434_101635345	Not Available	652	Open in IMG/M
3300006904\|Ga0075424_101657310	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300006904\|Ga0075424_102475458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300007076\|Ga0075435_100363503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1242	Open in IMG/M
3300009012\|Ga0066710_101292363	Not Available	1131	Open in IMG/M
3300009038\|Ga0099829_10727029	Not Available	825	Open in IMG/M
3300010043\|Ga0126380_10023849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2989	Open in IMG/M
3300010043\|Ga0126380_10969936	Not Available	713	Open in IMG/M
3300010043\|Ga0126380_11025853	Not Available	697	Open in IMG/M
3300010046\|Ga0126384_10037407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3269	Open in IMG/M
3300010046\|Ga0126384_11450975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	641	Open in IMG/M
3300010048\|Ga0126373_10159596	All Organisms → cellular organisms → Bacteria	2152	Open in IMG/M
3300010048\|Ga0126373_12245066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. P5	607	Open in IMG/M
3300010337\|Ga0134062_10187947	Not Available	936	Open in IMG/M
3300010358\|Ga0126370_10915684	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300010358\|Ga0126370_10952358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	780	Open in IMG/M
3300010359\|Ga0126376_10179815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1730	Open in IMG/M
3300010360\|Ga0126372_12570350	Not Available	560	Open in IMG/M
3300010366\|Ga0126379_10826479	Not Available	1026	Open in IMG/M
3300010366\|Ga0126379_12564395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	608	Open in IMG/M
3300010366\|Ga0126379_13446493	Not Available	530	Open in IMG/M
3300010366\|Ga0126379_13847083	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300010376\|Ga0126381_100141287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3148	Open in IMG/M
3300010376\|Ga0126381_102448957	Not Available	748	Open in IMG/M
3300010863\|Ga0124850_1003160	Not Available	4946	Open in IMG/M
3300012204\|Ga0137374_10330418	Not Available	1238	Open in IMG/M
3300012208\|Ga0137376_10593585	Not Available	958	Open in IMG/M
3300012211\|Ga0137377_10174255	Not Available	2065	Open in IMG/M
3300012211\|Ga0137377_10936071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	798	Open in IMG/M
3300012355\|Ga0137369_10372626	Not Available	1036	Open in IMG/M
3300012358\|Ga0137368_10435935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	854	Open in IMG/M
3300012359\|Ga0137385_10420903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1137	Open in IMG/M
3300012532\|Ga0137373_10090414	All Organisms → cellular organisms → Bacteria → Proteobacteria	2701	Open in IMG/M
3300012923\|Ga0137359_11305041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
3300016270\|Ga0182036_10557269	Not Available	914	Open in IMG/M
3300016319\|Ga0182033_11506567	Not Available	607	Open in IMG/M
3300016357\|Ga0182032_10726302	Not Available	835	Open in IMG/M
3300016371\|Ga0182034_10269639	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300016445\|Ga0182038_10817078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. P5	818	Open in IMG/M
3300018468\|Ga0066662_10996774	Not Available	829	Open in IMG/M
3300021168\|Ga0210406_11181449	Not Available	558	Open in IMG/M
3300025885\|Ga0207653_10347664	All Organisms → cellular organisms → Bacteria → Proteobacteria	579	Open in IMG/M
3300025885\|Ga0207653_10448077	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300025910\|Ga0207684_10012110	All Organisms → cellular organisms → Bacteria → Proteobacteria	7509	Open in IMG/M
3300025922\|Ga0207646_10392490	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300026304\|Ga0209240_1237038	Not Available	555	Open in IMG/M
3300026319\|Ga0209647_1215769	Not Available	653	Open in IMG/M
3300027874\|Ga0209465_10019566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3107	Open in IMG/M
3300028881\|Ga0307277_10478656	Not Available	558	Open in IMG/M
3300031546\|Ga0318538_10058662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1903	Open in IMG/M
3300031546\|Ga0318538_10136856	All Organisms → cellular organisms → Bacteria → Proteobacteria	1287	Open in IMG/M
3300031546\|Ga0318538_10459957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Ancylobacter → Ancylobacter dichloromethanicus	689	Open in IMG/M
3300031573\|Ga0310915_10557593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	813	Open in IMG/M
3300031640\|Ga0318555_10291098	Not Available	883	Open in IMG/M
3300031679\|Ga0318561_10349818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	810	Open in IMG/M
3300031713\|Ga0318496_10857074	Not Available	501	Open in IMG/M
3300031747\|Ga0318502_10684992	Not Available	619	Open in IMG/M
3300031770\|Ga0318521_10388261	Not Available	831	Open in IMG/M
3300031770\|Ga0318521_10528107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	710	Open in IMG/M
3300031770\|Ga0318521_10555559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. P5	692	Open in IMG/M
3300031771\|Ga0318546_10426575	Not Available	927	Open in IMG/M
3300031777\|Ga0318543_10444965	Not Available	581	Open in IMG/M
3300031778\|Ga0318498_10263724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	775	Open in IMG/M
3300031778\|Ga0318498_10563031	Not Available	500	Open in IMG/M
3300031781\|Ga0318547_10830771	Not Available	576	Open in IMG/M
3300031794\|Ga0318503_10155620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	737	Open in IMG/M
3300031846\|Ga0318512_10283334	Not Available	822	Open in IMG/M
3300031860\|Ga0318495_10406222	Not Available	600	Open in IMG/M
3300031879\|Ga0306919_11263837	Not Available	560	Open in IMG/M
3300031890\|Ga0306925_10095339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3162	Open in IMG/M
3300031910\|Ga0306923_12267438	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300031941\|Ga0310912_10677067	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300031942\|Ga0310916_11456429	All Organisms → cellular organisms → Bacteria → Proteobacteria	559	Open in IMG/M
3300031954\|Ga0306926_10749748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1180	Open in IMG/M
3300031981\|Ga0318531_10151539	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300032001\|Ga0306922_11367789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	713	Open in IMG/M
3300032025\|Ga0318507_10376528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	618	Open in IMG/M
3300032039\|Ga0318559_10405606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300032051\|Ga0318532_10037043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. P5	1646	Open in IMG/M
3300032059\|Ga0318533_10079967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2229	Open in IMG/M
3300032059\|Ga0318533_10459948	Not Available	931	Open in IMG/M
3300032064\|Ga0318510_10043149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. P5	1569	Open in IMG/M
3300032076\|Ga0306924_12175087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	566	Open in IMG/M
3300032091\|Ga0318577_10236366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Ancylobacter → Ancylobacter dichloromethanicus	875	Open in IMG/M
3300032094\|Ga0318540_10494453	Not Available	590	Open in IMG/M
3300032261\|Ga0306920_100126353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3803	Open in IMG/M
3300033289\|Ga0310914_10042703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3703	Open in IMG/M
3300033289\|Ga0310914_10587747	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.01%
Host-Associated	Host-Associated	6.99%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.01%
Plants	Host-Associated → Plants	6.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.01%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.29%
Phylloplane	Host-Associated → Plants → Phylloplane	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.43%
Loam	Environmental → Terrestrial → Soil → Loam	26.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.29%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.28%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.58%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.99%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.70%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.08%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	19.58%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.29%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.70%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.70%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1014531821	3300000364	Soil	MRFNIWVILAALLALLVATRYLQHERDTDRICADDPSASV
AF_2010_repII_A1DRAFT_100670012	3300000597	Forest Soil	MRMNIWIMLAALLALLAITRYAQHEKEAERICVDDLTASVCHR*
AF_2010_repII_A1DRAFT_100710323	3300000597	Forest Soil	MPRGGKATPMRVNIWIILATLLALLVITRYLQHHGETERICADDPTASVCQR*
AF_2010_repII_A1DRAFT_100727572	3300000597	Forest Soil	VRINIWIILATLLALLVIIRYMQHQETPAICVDEPTAAVCHR*
JGI1027J12803_1008224692	3300000955	Soil	MRLNIWITLASLLALLAIIRYMQRPADTQICVDDPTASVCHR*
JGI1027J12803_1020266553	3300000955	Soil	WIILAALLALLVITRYLQQDRDTQRICADDPSVSACQQ*
JGI10216J12902_1006055642	3300000956	Soil	MRVNIWIILAALLALLVITRYMQHEQDTDRICANDPTASVCQR*
JGI10216J12902_1064279411	3300000956	Soil	MRLNIWVILATLLALLLATRYLQHEGYTQRICADDPSASV
JGI10216J12902_1186053681	3300000956	Soil	MRINTWIILGTLLALLAITRYMQHQGDQRICVDDP
Ga0066398_100437041	3300004268	Tropical Forest Soil	MRLNIWIILAALLALLVITRYIQQERDTERICADDPSASACQR*
Ga0066395_109930621	3300004633	Tropical Forest Soil	MRINIWIILATLLALLAITRYVQEGRHTEHICANDPTASACER*
Ga0066683_107276342	3300005172	Soil	QCGGRSALMRINIWIILGTLLALLAITRYMQHREDTQRICANDPTASVCER*
Ga0066675_100865172	3300005187	Soil	MRINIWIILGTLLALLAIARYMQHQGDQRICVDDPTASVCHR*
Ga0066388_1000227565	3300005332	Tropical Forest Soil	MRINIWIILATLLALLVITRYLQQDRNTQRICADDPSASVCQQ*
Ga0066388_1003278754	3300005332	Tropical Forest Soil	MRMNIWIILAALLALLAITRYAQQGRNTQRICADDPTASVCHR*
Ga0066388_1008693843	3300005332	Tropical Forest Soil	MRINIWIILGVLLVLFAITRLWRHQQDIQRICADDPSASVCER*
Ga0066388_1012441612	3300005332	Tropical Forest Soil	MRINIWIILGTLLALLAITRYLQDQRDTQRICADDPTASVCQR*
Ga0066388_1050484852	3300005332	Tropical Forest Soil	MRINIWIILAALLALLVITRYLQQDRDTQRICADDPSASVCQR*
Ga0066388_1052011202	3300005332	Tropical Forest Soil	MRINIWIILAALLALLVITRYLQHDRDTERICADDPSASVCQR*
Ga0066388_1055238421	3300005332	Tropical Forest Soil	MRINIWIILASLLALLVITRYLQQARDTQRICADDPSASVCQR*
Ga0066388_1078358111	3300005332	Tropical Forest Soil	MHQVHAQGLLSGAGKPALMRINIWIALAVLLALLAITRLSQCQHETERICADDPSASECQR*
Ga0008090_101693423	3300005363	Tropical Rainforest Soil	MRINIWIILATLLALLVITRYIQHEKDAERICLDDPTASVCQRRLLSQIE*
Ga0070708_1001250574	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRINIWIILAALLALLAITRYMQHQQDTERICANDPTASVCQR*
Ga0066681_109915072	3300005451	Soil	MRINIWIVIAILTALLAITRYFVQERETQRICADDPSASVCQ
Ga0070707_1000869914	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	ALMRINIWIILAALLALLAITRYMQHQQDTERICANDPTASVCQR*
Ga0070707_1003575293	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRINIWIILAALLALLVITRYMQNDRTQRICADDPSASVCQR
Ga0070707_1021763932	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPRGGKATLMRVNIWIILATLLALLVITRYLQHQGETKRICTDDPTASVCQR*
Ga0070698_1003534202	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MRVNIWIILAALLALLVITRYMQHERDTDRICANDPTASVCQR*
Ga0066695_101111772	3300005553	Soil	MRINIWIVIAILTALLAITRYFVQERETQRICADDPSASVCQR*
Ga0066661_102230201	3300005554	Soil	QCGGRSALMRINIWIILGTLLALLAIARYMQHQGDQRICVDDPTASVCHR*
Ga0066704_102661711	3300005557	Soil	MRINIWIILAALLALLAITRYMQHQQDTERICANDPT
Ga0058697_100895622	3300005562	Agave	MRLTVWLILAALLALVLVIRYMQKHETPAICVDDPTASVCHR*
Ga0066905_1003764042	3300005713	Tropical Forest Soil	MRINIWIILAALLALLVMTRYLQQDRDTQRICADDPSASVCQR*
Ga0066905_1006006112	3300005713	Tropical Forest Soil	MRINIWIILATLLALLAITRYVQEGRHTEHICANGPTALACER*
Ga0066905_1008178761	3300005713	Tropical Forest Soil	MRMNIWIILAALLALLAITRYAQQGKNTQRICADDPTASVCHR*
Ga0066905_1016892071	3300005713	Tropical Forest Soil	NSSPGQAALMRINIWIILASLLALLVITRYLQHDRDTERICADDPSASVCQR*
Ga0066905_1019953422	3300005713	Tropical Forest Soil	MRLNIWVIFATLLALLLATRYLQHEGYTQRICADDPSASDADGK
Ga0066903_10004005012	3300005764	Tropical Forest Soil	MRMNIWIILAALLALLAITRYAQQGRNTQRICADDPTASVCH
Ga0066903_1015647212	3300005764	Tropical Forest Soil	MRINIWIILAALLALLVITRYLQQDGDTQRICADDPSASVCQR*
Ga0066903_1017066381	3300005764	Tropical Forest Soil	MRLNIWVILAALLALLVATRYLQHERDTERICADDPSA
Ga0066903_1017750043	3300005764	Tropical Forest Soil	MRLNIWIILATLLALFAIIRYMQSPGDTQICIDDPTAAVAIDES*
Ga0066903_1035152771	3300005764	Tropical Forest Soil	MRLNIWIILATLLALFAIIRYMQSPGDTQICIDDPTAAVAIDEVK
Ga0066903_1059071911	3300005764	Tropical Forest Soil	MRLNIWIIVATLLALLAIIRYMQRPGDMQICVDDPTAPVCHR*
Ga0066903_1061059782	3300005764	Tropical Forest Soil	ILAALLALLVITRYMQNDRDTQRICTDDPSASVCQQ*
Ga0066903_1071659142	3300005764	Tropical Forest Soil	MHQVHAQGLLSGAGKTALMRINIWIVLAVLLALLAITRLSQCQHETERICADDPSASECQR*
Ga0066903_1078725672	3300005764	Tropical Forest Soil	MRINIWIILAALLALLVITRYLQQDRDTQRICADDPIASACQR*
Ga0066903_1089489212	3300005764	Tropical Forest Soil	MMRLNIWVILAALLALLVATRYLQHERDTERICADDPSAP
Ga0066903_1090070173	3300005764	Tropical Forest Soil	MRINIWIILAALLALLVITRYLQQDRDMQRICADDPSASA
Ga0075417_100895162	3300006049	Populus Rhizosphere	MRINVWIILGILLVLFAMTRYTKYQKDTERICANDPTASVCER*
Ga0070715_101215102	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MRLNIWIILASLLALLAIIRYMQRPADTQICVDDPTASVAIDES*
Ga0066665_115649972	3300006796	Soil	MRLNFWILLATLLALLAITRYMQRPGDTQICVDDPTASV
Ga0075421_1003483405	3300006845	Populus Rhizosphere	MRINVWIILGILLVLFAMTRYTKYQKDTERICANDPTASVC
Ga0075421_1023522721	3300006845	Populus Rhizosphere	MVLRRQVAYRQRGGWSALMRIDIWVIVLVTLLALLVVARYLQHQGDTQRICVDDPTASVCHR*
Ga0075425_1002893521	3300006854	Populus Rhizosphere	MRINIWIILAALLALLVITRYMQEDRDTQRICADDPTASVCHR*
Ga0075425_1003248442	3300006854	Populus Rhizosphere	MRINIWIVLAILLVLLAVTRYAQYQRDTQERICVDDPTASVCERM*
Ga0075434_1016353452	3300006871	Populus Rhizosphere	AALLALLAITRYMQHQQDTERICANDPTASVCQR*
Ga0075424_1016573101	3300006904	Populus Rhizosphere	MRVNIWIILAALLALLVITRYMQHERDTDRICANDPTAS
Ga0075424_1024754581	3300006904	Populus Rhizosphere	INIWIILAALLALLVITRYLQQDRDTQRICADDPSVSACQQ*
Ga0075435_1003635031	3300007076	Populus Rhizosphere	MRINIWIVLAILLTLLAVTRYLPHRGDTQRVCVDDPTASVC
Ga0066710_1012923633	3300009012	Grasslands Soil	ALMRINIWIILGTLLALLAITRYMQHQGDTQRICANDPTASVCHR
Ga0099829_107270291	3300009038	Vadose Zone Soil	KAPLMRMNIWIILATLLALLAITRYMQHEKDTERICVDDPTASVCHR*
Ga0126380_100238493	3300010043	Tropical Forest Soil	MRINIWIILASLLALLVITRYLQHDRDTERICADDPSASVCQR*
Ga0126380_109699361	3300010043	Tropical Forest Soil	LNCETQLPMPRRQRFLTMRLNIWVILAALLALLVATRYLQHERDTERICADDPSASVCGR
Ga0126380_110258531	3300010043	Tropical Forest Soil	MRMNIWIILAALLALLAITRYAQQGKNTQGICADDPTASVCHR*
Ga0126384_100374076	3300010046	Tropical Forest Soil	MRMNIWIILAALLALLAITRYAQQGRNTQRICADGPTASVCHR*
Ga0126384_114509752	3300010046	Tropical Forest Soil	LREQRGCWAALMRINIWIILATLLALLVITRYLEQGRDTQRICADDPSASVCQR*
Ga0126373_101595963	3300010048	Tropical Forest Soil	ALMRVNIWIVLAILLVLLAVARYVRYQGDRERICIDDPTASVCHR*
Ga0126373_122450662	3300010048	Tropical Forest Soil	ILAALLALLAITRYLQHQQDTQRICADDPTASVCQR*
Ga0134062_101879471	3300010337	Grasslands Soil	MRLNIWVILATLLALLLATRYLQHEGYTQRICADDPRAS
Ga0126370_109156841	3300010358	Tropical Forest Soil	MRINTWIILAALLALLVITRYLQQDRDTQRICADDPSASV
Ga0126370_109523582	3300010358	Tropical Forest Soil	MRINIWIILDVLLVLFAITRLWRHQQDIQRICADDPSASVCER*
Ga0126376_101798154	3300010359	Tropical Forest Soil	IWIILAALLALLVITRYMQNDRDTQRICTDDPSASVCQQ*
Ga0126372_125703501	3300010360	Tropical Forest Soil	ETQLPMPRRQRFLTMRLNIWVILAALLALLVATRHLQHERDTERICADDPSASVCGR*
Ga0126379_108264792	3300010366	Tropical Forest Soil	VKAAERSAKTLPSVAGLALMRMNIWIMLAALLALLAITRYAQHEKEAERICVDDLTASVCHR*
Ga0126379_125643951	3300010366	Tropical Forest Soil	IMLAALLALLAITRYAQHEKEAERICVDDPTASVCHR*
Ga0126379_134464931	3300010366	Tropical Forest Soil	FLTMRLNIWVILAALLALLVATRYLQHERDTERICADDPSASVCGR*
Ga0126379_138470831	3300010366	Tropical Forest Soil	RLNIWIIFAALLALLAITRYLQHQQDTRRICADDPTASACQREERLSNVI*
Ga0126381_1001412871	3300010376	Tropical Forest Soil	PRRGRAALMRINIWIILASLLALLVITRYLQHDRDTERICADDPSASVCQR*
Ga0126381_1024489572	3300010376	Tropical Forest Soil	MMRLNIWVILAALLALLVATRYLQHERDTERICADD
Ga0124850_10031602	3300010863	Tropical Forest Soil	MPRRQRFLTMRLNIWVIFATLLALLLATRYLQHEGYTQRICADDPSASVCGR*
Ga0137374_103304182	3300012204	Vadose Zone Soil	MRINIWIILGILLGLFAITRYAHYQKDTERICANEPTASVCER*
Ga0137376_105935854	3300012208	Vadose Zone Soil	PLMRMNIWIILATLLALLAITRYMQHEKDTERICVDDPTASVCHR*
Ga0137377_101742553	3300012211	Vadose Zone Soil	MRINIWIILGALLALLAITRYTQYREDTQRICAKDPTASVCER*
Ga0137377_109360712	3300012211	Vadose Zone Soil	MRMNIWIILATLLALLAITRYMQHEKDTERICVDDPTASVCHR*
Ga0137369_103726261	3300012355	Vadose Zone Soil	MRINIWIILGPLLALLAITRYMQHQKDTQRICANDPTASVCER*
Ga0137368_104359351	3300012358	Vadose Zone Soil	MRVNIWIVLAFLLALFAITRFAHYQGDTRRICADDPSASVCQR*
Ga0137385_104209031	3300012359	Vadose Zone Soil	QMRINIWIILGALLALLAITRYTQYREDTQRICAKDPTASVCER*
Ga0137373_100904144	3300012532	Vadose Zone Soil	MRINIWIILGALLALLSITRYTQYREDTQRICAKDPTASVCER*
Ga0137359_113050413	3300012923	Vadose Zone Soil	IWIILAALLALLVITRYLQHDRDTQRICADDPSASVCQR*
Ga0182036_105572692	3300016270	Soil	RQRFLTMRLNIWVILAALLALLVATRHLQHERDTERICADDPSASVCGR
Ga0182033_115065671	3300016319	Soil	CETQLPMPRRQRFLTMRLNIWVILAALLALLVATRYLQHERDTERICADDPSASVCGR
Ga0182032_107263022	3300016357	Soil	ETQLPMPRRQRFLTMRLNIWVILAALLALLVATRHLQHERDTERICADDPSASVCGR
Ga0182034_102696393	3300016371	Soil	WLALMRMNIWIILAALLALLAITRYAEQDRNTQRTCADDPTASVCHR
Ga0182038_108170781	3300016445	Soil	NAGQGALMRLNIWIIFAALLALLAITRYLQHQQDTRRICADDPTASACQ
Ga0066662_109967742	3300018468	Grasslands Soil	MRINIWIILAALLALLAITRYMQHQQDTERICANDPTASVC
Ga0210406_111814492	3300021168	Soil	RAALMRINIWIVLAILLVLLAVTRYAQYQRDTQERICVDDPTASVCERM
Ga0207653_103476642	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	VAGLALMRINIWIILAALLALLVITRYMQNDRTQRICADDPSASVCQR
Ga0207653_104480772	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	RRGQGALMRINIWIILAALLALLAITRYMQHQQDTERICANDPTASVCQR
Ga0207684_100121106	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRINIWIILAALLALLAITRYMQHQQDTERICANDPTASVCQR
Ga0207646_103924901	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRINIWIILAALLALLVITRYMQNDRTQRICADDPSASVCQ
Ga0209240_12370381	3300026304	Grasslands Soil	MRMNIWIILATLLALLAITRYMQHEKDTERICVDDPTASVCHR
Ga0209647_12157691	3300026319	Grasslands Soil	AALMRINIWIILAALLALLVITRYLQHDRDTQRICADDPSASVCQR
Ga0209465_100195663	3300027874	Tropical Forest Soil	MPRRQRFLTMRLNIWVILAALLALLVATRYLQHERDTERICADDPSASVCGR
Ga0307277_104786561	3300028881	Soil	MRINIWIILGILLALFAITRYTHYQKDAERICANDPTESVCER
Ga0318538_100586623	3300031546	Soil	MRVNIWILLAIPLVLLAVARYVRYQEDQRICVDDPTAGCAIGEKA
Ga0318538_101368561	3300031546	Soil	MRINIWIILATLLALLVITRYLQHDRDTQRICADDPSASVC
Ga0318538_104599572	3300031546	Soil	MRVNIWIIHAALLALLAITRYLQHQQDTQRICGDD
Ga0310915_105575932	3300031573	Soil	MRINIWIILATLLALLVITRYLQQDRDTQRICADDPSA
Ga0318555_102910981	3300031640	Soil	MRISIWIILATLLALLAITRYVQEGRHTEHICANDPT
Ga0318561_103498182	3300031679	Soil	LTMRLNIWVILAALLALLVATRHLQHERDTERICADDPSASVCGR
Ga0318496_108570741	3300031713	Soil	MRINIWIVLAFLLVLFAVTRYLRYQEDTQRICADDPTASVCER
Ga0318502_106849921	3300031747	Soil	TQLPMPRRQRFLTMRLNIWVILAALLALLVATRYLQHERDTERICADDPSASVCGR
Ga0318521_103882611	3300031770	Soil	EGGAGALMRINLWIILAALLALLAITRYLQDQQDTEHICADDPTASVCQR
Ga0318521_105281071	3300031770	Soil	IWIILAALLALLAITRYLQHQHDTQRICGDDPTASVCQR
Ga0318521_105555592	3300031770	Soil	DAGQGALMRLNIWIIFAALLALLAITRYLQHQQDTRRICADDPTASACQ
Ga0318546_104265752	3300031771	Soil	RLNCETQLPMPRRQRFLTMRLNIWVILAALLALLVATRYLQHQRDTERICADDPSASVCG
Ga0318543_104449651	3300031777	Soil	RRFLTMRLNIWVILAALLALLVATRYLQHERDTERICADDPSASVCGR
Ga0318498_102637241	3300031778	Soil	VNIWIMLAALLALLVITRYLQHQQDTQRICGDDPTASVCQR
Ga0318498_105630312	3300031778	Soil	NIWIVLAFLLVLFAVTRYLRYQEDTQRICADDPTASVCER
Ga0318547_108307711	3300031781	Soil	SVAGFALMRMNIWIILAALLALLAITRYAQQGRNTQRICADDPTASVCHR
Ga0318503_101556202	3300031794	Soil	GQGALMRVNIWIILAALLALLAITRYLQHQHDTQRICGDDPTASVCQR
Ga0318512_102833342	3300031846	Soil	LATLLALLAITRYVQEGRHTEHICANDPTASACER
Ga0318495_104062222	3300031860	Soil	MRLNIWVILAALLALLVATRYLQHQRDTERICADDPS
Ga0306919_112638371	3300031879	Soil	AQRTGHDYAHHWLALMRMNIWIILAALLALLAITRYAEQGRNTQRICADDPTASVCHR
Ga0306925_100953396	3300031890	Soil	MPRRQRFLTMRLNIWVIFATLLALLLATRYLQHEGYTQRICADDPSASVCGR
Ga0306923_122674381	3300031910	Soil	WIILAALLALLAITWYLQHQQDTQRICGDDPTASVCQR
Ga0310912_106770672	3300031941	Soil	MRLNIWVILAALLALLLATRYLQHEGYTQRICGDDPSASGMRTVR
Ga0310916_114564292	3300031942	Soil	EPFAGNAGGQGSLMAVNIWTILAAPLALLAITRYLQHQQDTQRIRGDDPTASVCQR
Ga0306926_107497483	3300031954	Soil	LNCETQLPMPRRQRFLTMRLNIWVILAALLALLVATRHLQHERDTERICADDPSASVCGR
Ga0318531_101515392	3300031981	Soil	PSVAGLALMRMNIWIILAALLALLAITRYAEQDRNTQRICADDPTASVCHR
Ga0306922_113677891	3300032001	Soil	MRMNIWIILAALLALLAITRYAQQGRNTQRICADDPTASA
Ga0318507_103765283	3300032025	Soil	INIWIILASLLALLVITRYLQQARDTQRICADDPSASVCQR
Ga0318559_104056062	3300032039	Soil	IILAALLALLAITRYLQHQQDTQRICGDDPTAPVCQR
Ga0318532_100370431	3300032051	Soil	LHRNAGQGALMRLNIWIIFAALLALLAITRYLQHQQDTRRICADDPTASACQ
Ga0318533_100799675	3300032059	Soil	CRAIHRNAGQGALMRLNIWIIFAALLALLAITRYLQHQQDTRRICADDPTASACQ
Ga0318533_104599482	3300032059	Soil	RFLTMRLNIWVILAALLALLVATRYLQHERDTERICADDPSASVCGR
Ga0318510_100431491	3300032064	Soil	ALMRLNIWIIFAALLALLAITRYLQHQQDTRRICADDPTASACQ
Ga0306924_121750872	3300032076	Soil	MRINIWIILATLLALLVITRYLQQDRDTQRICADDPSASVC
Ga0318577_102363661	3300032091	Soil	MRVNIWIIHAALLALLAITRYLQHQQDTQRICGDDPTASV
Ga0318540_104944531	3300032094	Soil	QRFLTMRLNIWVILAALLALLVATRYLQHERDTERICADDPSASVCGR
Ga0306920_1001263531	3300032261	Soil	MRMNIWIILAALLALLAITRYAQQGRNTQHICADDPTASACHR
Ga0310914_100427031	3300033289	Soil	MRINLWIILAALLALLAITRYLQDQQDTEHICADDPTASVCQR
Ga0310914_105877472	3300033289	Soil	PSVAGLALMRMNIWIILAALLALLAITRYAEQDRNTQRTCADDPTASVCHR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052234

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences