Metagenome / Metatranscriptome Family F051767

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F051767
Family Type	Metagenome / Metatranscriptome
Number of Sequences	143
Average Sequence Length	43 residues
Representative Sequence	MNAPFLTRVLRSYQQRAATFLYERDAAVLVAPLGAGKGAAALT
Number of Associated Samples	92
Number of Associated Scaffolds	143

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	94.41 %
% of genes near scaffold ends (potentially truncated)	98.60 %
% of genes from short scaffolds (< 2000 bps)	90.21 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (55.245 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (51.049 % of family members)
Environment Ontology (ENVO)	Unclassified (74.825 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (51.748 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.66% β-sheet: 0.00% Coil/Unstructured: 56.34%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 143 Family Scaffolds
PF00476	DNA_pol_A	32.87
PF01555	N6_N4_Mtase	2.80
PF10926	DUF2800	2.10
PF05869	Dam	1.40

COG ID	Name	Functional Category	% Frequency in 143 Family Scaffolds
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	32.87
COG0863	DNA modification methylase	Replication, recombination and repair [L]	2.80
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	2.80
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	2.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.24 %
All Organisms	root	All Organisms	44.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.24 %
cellular organisms	root	All Organisms → cellular organisms	44.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.24 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.24 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.36 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.50 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.24 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	35.66 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.50 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.24 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	34.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.50 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.24 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	30.77 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.50 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.24 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	30.77 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.50 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.24 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	30.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.50 %
Bradyrhizobium nanningense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium nanningense	2.80 %
Bradyrhizobium neotropicale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	0.70 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.70 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.70 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_102764349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium nanningense	598	Open in IMG/M
3300004081\|Ga0063454_100793441	Not Available	731	Open in IMG/M
3300004268\|Ga0066398_10226909	Not Available	503	Open in IMG/M
3300005332\|Ga0066388_106484136	Not Available	590	Open in IMG/M
3300005332\|Ga0066388_107850284	Not Available	534	Open in IMG/M
3300005363\|Ga0008090_15625788	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300005459\|Ga0068867_102257628	Not Available	517	Open in IMG/M
3300005713\|Ga0066905_100721072	Not Available	858	Open in IMG/M
3300005713\|Ga0066905_101234461	Not Available	670	Open in IMG/M
3300005713\|Ga0066905_102123926	Not Available	523	Open in IMG/M
3300005764\|Ga0066903_100864503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1630	Open in IMG/M
3300005764\|Ga0066903_106688332	Not Available	600	Open in IMG/M
3300006846\|Ga0075430_101673947	Not Available	522	Open in IMG/M
3300009156\|Ga0111538_12017711	Not Available	725	Open in IMG/M
3300010043\|Ga0126380_10170142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1422	Open in IMG/M
3300010046\|Ga0126384_10033495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3429	Open in IMG/M
3300010046\|Ga0126384_10416801	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1138	Open in IMG/M
3300010366\|Ga0126379_10190691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1960	Open in IMG/M
3300010366\|Ga0126379_12259305	Not Available	645	Open in IMG/M
3300010366\|Ga0126379_12876937	Not Available	576	Open in IMG/M
3300010366\|Ga0126379_13021120	Not Available	563	Open in IMG/M
3300010376\|Ga0126381_103780408	Not Available	592	Open in IMG/M
3300010376\|Ga0126381_103854213	Not Available	585	Open in IMG/M
3300010398\|Ga0126383_12082620	Not Available	654	Open in IMG/M
3300010398\|Ga0126383_13490107	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300010401\|Ga0134121_11113666	Not Available	783	Open in IMG/M
3300012971\|Ga0126369_12105948	All Organisms → cellular organisms → Bacteria → Proteobacteria	652	Open in IMG/M
3300013306\|Ga0163162_12977458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium nanningense	544	Open in IMG/M
3300014326\|Ga0157380_12630376	Not Available	569	Open in IMG/M
3300014968\|Ga0157379_12299446	Not Available	537	Open in IMG/M
3300014969\|Ga0157376_12676834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium nanningense	539	Open in IMG/M
3300016270\|Ga0182036_10029398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3248	Open in IMG/M
3300016270\|Ga0182036_10843186	Not Available	749	Open in IMG/M
3300016294\|Ga0182041_11556466	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300016319\|Ga0182033_10737572	Not Available	864	Open in IMG/M
3300016341\|Ga0182035_11593764	Not Available	589	Open in IMG/M
3300016371\|Ga0182034_10724184	Not Available	847	Open in IMG/M
3300016387\|Ga0182040_11239034	Not Available	628	Open in IMG/M
3300016404\|Ga0182037_10262200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1373	Open in IMG/M
3300016404\|Ga0182037_12137841	Not Available	504	Open in IMG/M
3300016422\|Ga0182039_10946171	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	771	Open in IMG/M
3300016445\|Ga0182038_10177858	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300016445\|Ga0182038_11548445	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300021560\|Ga0126371_12920840	Not Available	579	Open in IMG/M
3300021560\|Ga0126371_13695865	Not Available	516	Open in IMG/M
3300027874\|Ga0209465_10508847	Not Available	601	Open in IMG/M
3300028811\|Ga0307292_10478167	Not Available	533	Open in IMG/M
3300031543\|Ga0318516_10449853	Not Available	740	Open in IMG/M
3300031561\|Ga0318528_10212037	Not Available	1037	Open in IMG/M
3300031561\|Ga0318528_10545714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	622	Open in IMG/M
3300031573\|Ga0310915_10447724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	918	Open in IMG/M
3300031573\|Ga0310915_11256098	Not Available	511	Open in IMG/M
3300031668\|Ga0318542_10409869	Not Available	700	Open in IMG/M
3300031679\|Ga0318561_10021870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2984	Open in IMG/M
3300031679\|Ga0318561_10031417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2566	Open in IMG/M
3300031680\|Ga0318574_10004959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5592	Open in IMG/M
3300031680\|Ga0318574_10065427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1950	Open in IMG/M
3300031680\|Ga0318574_10501923	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300031719\|Ga0306917_10637323	Not Available	838	Open in IMG/M
3300031724\|Ga0318500_10569850	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300031724\|Ga0318500_10600158	Not Available	558	Open in IMG/M
3300031744\|Ga0306918_10140063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1775	Open in IMG/M
3300031744\|Ga0306918_10576003	Not Available	882	Open in IMG/M
3300031744\|Ga0306918_11501045	Not Available	515	Open in IMG/M
3300031748\|Ga0318492_10121222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1301	Open in IMG/M
3300031751\|Ga0318494_10882787	Not Available	524	Open in IMG/M
3300031765\|Ga0318554_10478934	Not Available	705	Open in IMG/M
3300031768\|Ga0318509_10074516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1787	Open in IMG/M
3300031768\|Ga0318509_10332965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	850	Open in IMG/M
3300031768\|Ga0318509_10367369	Not Available	805	Open in IMG/M
3300031770\|Ga0318521_10389036	Not Available	830	Open in IMG/M
3300031782\|Ga0318552_10005597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	4943	Open in IMG/M
3300031782\|Ga0318552_10171044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1095	Open in IMG/M
3300031792\|Ga0318529_10558169	Not Available	532	Open in IMG/M
3300031794\|Ga0318503_10014192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2153	Open in IMG/M
3300031799\|Ga0318565_10051703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1908	Open in IMG/M
3300031805\|Ga0318497_10200115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1103	Open in IMG/M
3300031805\|Ga0318497_10753859	Not Available	546	Open in IMG/M
3300031832\|Ga0318499_10083375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1227	Open in IMG/M
3300031832\|Ga0318499_10181363	Not Available	821	Open in IMG/M
3300031833\|Ga0310917_10451577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	874	Open in IMG/M
3300031835\|Ga0318517_10100115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1272	Open in IMG/M
3300031845\|Ga0318511_10178760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	937	Open in IMG/M
3300031845\|Ga0318511_10306700	Not Available	718	Open in IMG/M
3300031845\|Ga0318511_10556581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	533	Open in IMG/M
3300031846\|Ga0318512_10087550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1449	Open in IMG/M
3300031859\|Ga0318527_10123608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1074	Open in IMG/M
3300031860\|Ga0318495_10052688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1803	Open in IMG/M
3300031879\|Ga0306919_10572461	Not Available	871	Open in IMG/M
3300031879\|Ga0306919_11386284	Not Available	531	Open in IMG/M
3300031879\|Ga0306919_11407547	Not Available	526	Open in IMG/M
3300031880\|Ga0318544_10049000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1521	Open in IMG/M
3300031880\|Ga0318544_10352978	Not Available	571	Open in IMG/M
3300031890\|Ga0306925_10087199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3310	Open in IMG/M
3300031890\|Ga0306925_12008157	Not Available	545	Open in IMG/M
3300031893\|Ga0318536_10308921	Not Available	802	Open in IMG/M
3300031896\|Ga0318551_10602077	Not Available	634	Open in IMG/M
3300031897\|Ga0318520_11077770	Not Available	509	Open in IMG/M
3300031910\|Ga0306923_11675521	Not Available	658	Open in IMG/M
3300031912\|Ga0306921_10732229	Not Available	1134	Open in IMG/M
3300031912\|Ga0306921_11969953	Not Available	623	Open in IMG/M
3300031941\|Ga0310912_11009028	Not Available	638	Open in IMG/M
3300031945\|Ga0310913_10406266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	966	Open in IMG/M
3300031945\|Ga0310913_10515446	Not Available	849	Open in IMG/M
3300031945\|Ga0310913_10649586	Not Available	747	Open in IMG/M
3300031946\|Ga0310910_10353719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1161	Open in IMG/M
3300031946\|Ga0310910_10982809	Not Available	660	Open in IMG/M
3300031946\|Ga0310910_11046452	Not Available	637	Open in IMG/M
3300031947\|Ga0310909_10520807	Not Available	996	Open in IMG/M
3300031947\|Ga0310909_11256135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	597	Open in IMG/M
3300031954\|Ga0306926_11151806	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	914	Open in IMG/M
3300031981\|Ga0318531_10244499	Not Available	810	Open in IMG/M
3300032001\|Ga0306922_11529436	Not Available	666	Open in IMG/M
3300032001\|Ga0306922_11994875	Not Available	565	Open in IMG/M
3300032001\|Ga0306922_12074886	Not Available	552	Open in IMG/M
3300032010\|Ga0318569_10047197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1852	Open in IMG/M
3300032010\|Ga0318569_10292372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	758	Open in IMG/M
3300032025\|Ga0318507_10027786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2082	Open in IMG/M
3300032035\|Ga0310911_10080453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1756	Open in IMG/M
3300032039\|Ga0318559_10025725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2302	Open in IMG/M
3300032042\|Ga0318545_10100086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1015	Open in IMG/M
3300032042\|Ga0318545_10368415	Not Available	518	Open in IMG/M
3300032043\|Ga0318556_10423746	Not Available	696	Open in IMG/M
3300032043\|Ga0318556_10489149	Not Available	644	Open in IMG/M
3300032051\|Ga0318532_10009099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3001	Open in IMG/M
3300032051\|Ga0318532_10345649	Not Available	528	Open in IMG/M
3300032054\|Ga0318570_10437229	Not Available	597	Open in IMG/M
3300032055\|Ga0318575_10566705	Not Available	576	Open in IMG/M
3300032064\|Ga0318510_10397007	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300032067\|Ga0318524_10750955	Not Available	515	Open in IMG/M
3300032076\|Ga0306924_10133357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2834	Open in IMG/M
3300032076\|Ga0306924_10422817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1524	Open in IMG/M
3300032076\|Ga0306924_10631672	Not Available	1209	Open in IMG/M
3300032090\|Ga0318518_10020268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2923	Open in IMG/M
3300032090\|Ga0318518_10302896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	820	Open in IMG/M
3300032091\|Ga0318577_10058897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1739	Open in IMG/M
3300032174\|Ga0307470_10392076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium nanningense	979	Open in IMG/M
3300032261\|Ga0306920_102399528	Not Available	728	Open in IMG/M
3300032261\|Ga0306920_103937175	Not Available	540	Open in IMG/M
3300032261\|Ga0306920_104204846	Not Available	519	Open in IMG/M
3300033289\|Ga0310914_10038897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3857	Open in IMG/M
3300033289\|Ga0310914_10629741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	966	Open in IMG/M
3300033290\|Ga0318519_10588405	Not Available	675	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.10%
Host-Associated	Host-Associated	4.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.10%
Plants	Host-Associated → Plants	4.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.10%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.40%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.11%
Loam	Environmental → Terrestrial → Soil → Loam	6.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.40%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	75.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.19%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.70%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.70%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	51.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.29%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.40%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.70%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.70%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1027643492	3300000955	Soil	MNAPLPRVLRSYQQRAATFLYERDAALLVAPLGAGKGAAALTGIAE
Ga0063454_1007934411	3300004081	Soil	MNAPFLPRVLRSYQERAATFLYEHDAAFLVASLGAGKGAAALTAAAELIRDQ
Ga0066398_102269092	3300004268	Tropical Forest Soil	MNAPLVAPAPEIMDRRVLRGYQQRLATYLYERDAAFSIAPLG
Ga0066388_1064841362	3300005332	Tropical Forest Soil	LNAPITARVLYRYQQRAATHFYERDAAFLIAPLGAGKGAAALTALADLI
Ga0066388_1078502841	3300005332	Tropical Forest Soil	VKLRGSVPNMNAHFPGRVLRGYQQRAATFLYKHDVAFLIAPLGAGKGA
Ga0008090_156257881	3300005363	Tropical Rainforest Soil	MNAPFTTRILRAYQQRGATFLYDRDFGFMVAPLGAGKSTIAQ
Ga0068867_1022576282	3300005459	Miscanthus Rhizosphere	MNAPLPGRVLRGYQQRAATWLYERDAGFLIAPLGAGKGAAALTAIAELIRD
Ga0066905_1007210721	3300005713	Tropical Forest Soil	MNVPFTARVLYGYQQRAATFFYERDAAFLVAPLGAGKGAAALTALADLIRD
Ga0066905_1012344611	3300005713	Tropical Forest Soil	MNAPFLARVLRGYQQRAATFLYERDAAVLVAPLGAGKGAAAL
Ga0066905_1021239261	3300005713	Tropical Forest Soil	MNAPLRLRVLRGYQERAATYLYERDAAVLVAPLGAGKGAAALTAIAELIRDG
Ga0066903_1008645031	3300005764	Tropical Forest Soil	MNAPLNTRVLRSYQQRAATYLYETNAGFLVAPLGAGK
Ga0066903_1066883322	3300005764	Tropical Forest Soil	MMRALYSYQNRAATFFYERDAAFLVAPLGAGKGAAALTALAELVRD
Ga0075430_1016739472	3300006846	Populus Rhizosphere	MNAPLARILRSYQERGASYLYEHDGVFLIAPLGAGKGAAALTA
Ga0111538_120177111	3300009156	Populus Rhizosphere	MNSPRSLRSYQQRAATFLYERDAAFLIAPLGAGKGAAALTAIAE
Ga0126380_101701422	3300010043	Tropical Forest Soil	MNAPFLARVLRSYQQRAATYLYERDAAFLVAPLGAG
Ga0126384_100334955	3300010046	Tropical Forest Soil	MTRALYSYQNRAATFFYEHDAAFLVAPLGAGKGAAAL
Ga0126384_104168011	3300010046	Tropical Forest Soil	MNAPFLARVLRGYQQRAATFLYERDAAVLVAPLGAGKGAAALTAIAEL
Ga0126379_101906912	3300010366	Tropical Forest Soil	MNAPFLSRVLRSYQQRAATYLYERDAAFSIAPLGAGKG
Ga0126379_122593051	3300010366	Tropical Forest Soil	MNAPFVARVLRSYQQRAATYLYERDAAFCIAPLGAGKGAAALT
Ga0126379_128769371	3300010366	Tropical Forest Soil	LNAPFTARTLYGYQQRAATFFYERDAAFMVAPLGAGKGAAALTALAELI
Ga0126379_130211201	3300010366	Tropical Forest Soil	MNAPFPGRILRSYQQRAATYLYERDAAFLIAPLGAGKG
Ga0126381_1037804082	3300010376	Tropical Forest Soil	MNARFLARVLRGYQQRAATYLYERDAAFLIAPLGAGKGAAA
Ga0126381_1038542131	3300010376	Tropical Forest Soil	MNAPFVARVLRSYQQRAATYLYERDAAFCIAPLGAGKGAAALTALAD
Ga0126383_120826201	3300010398	Tropical Forest Soil	MNAPFFPRVLRSYQQRSATWLYEHDAAFLIAPLGAGKGAAALTAFADHDR
Ga0126383_134901072	3300010398	Tropical Forest Soil	VDALFTARALYGYQQRAATWFYERDAAFLVAPLGAGK
Ga0134121_111136661	3300010401	Terrestrial Soil	MNAPFPARVLRSYQQRAATFLYEKDAAFLIAPLGAGKGAAALTALAELI
Ga0126369_121059481	3300012971	Tropical Forest Soil	MLSLDRVDAPLVARVLYSYQNRAATWFYERDAAFLV
Ga0163162_129774582	3300013306	Switchgrass Rhizosphere	MNAPFLPRVLRSYQQRAATWLYERDTGSLIAPLGAGKGAAAL
Ga0157380_126303761	3300014326	Switchgrass Rhizosphere	MNAPFPHRVLRSYQERAATWLYEHDAAFLIAPLGAGKGA
Ga0157379_122994462	3300014968	Switchgrass Rhizosphere	MNPNMRGYQQRAATYLYERIAAFLIAPLGAGKGAAALTAFA
Ga0157376_126768341	3300014969	Miscanthus Rhizosphere	MSLRILRSYQQRGATFLYERDAGFLIAPLGAGKGASALTALAELIRYRL
Ga0182036_100293981	3300016270	Soil	MNAPFVARVLRSYQQRAATWLYEHDGAFMVAPLGAGK
Ga0182036_108431861	3300016270	Soil	MDALLRTRVLYGYQQRAATYFYERNAAFLIAPLGAGKGAAALTA
Ga0182041_115564661	3300016294	Soil	MNAPFLARVLRSYQERAATWLYEHDAAFLIAPLGAGKGAAALT
Ga0182033_107375722	3300016319	Soil	MNAPLPRMLRSYQQRAATWLYERDAAFLIAPLGAGKGAAALTAIAELI
Ga0182035_115937642	3300016341	Soil	MNVPLPRMLRSYQQRSATWLYERDAAFLIAPLGAGKGAAALTALAD
Ga0182034_107241842	3300016371	Soil	LNAPFLARVLRSYQQRAATYLYERDAAFLIAPLGAGKGAAALTALADLV
Ga0182040_112390342	3300016387	Soil	MSAARALYGYQQRAATFFYERDAAFLVAPLGAGKGAAAL
Ga0182037_102622001	3300016404	Soil	MNAPFAVRTLYGYQQRAATYFYERDAAFLVAPLGAGKGAA
Ga0182037_121378412	3300016404	Soil	MNAPFLARVLRFYQQRAATFLYEHDAAFLIAPLGAGKGAAAL
Ga0182039_109461712	3300016422	Soil	MNVPLPRMLRSYQQRSATWLYERDAAFLIAPLGAGKGAAALTALA
Ga0182038_101778583	3300016445	Soil	MNGPFLRRVLRSYQERAATFLFERDAALLIAPLGAGKGAAALTALAELI
Ga0182038_115484451	3300016445	Soil	MNAPFVARVLRSYQQRAATYLYESDAAFLIAPLGA
Ga0126371_129208401	3300021560	Tropical Forest Soil	LNAPFAVRVLRSYQQRGATFLYERDSAFAVMPLGAGKGAAALTAF
Ga0126371_136958652	3300021560	Tropical Forest Soil	MHAPFAARTLYGYQQRAATFFYEHDAAFLVAPLGAGKGAAALTA
Ga0209465_105088471	3300027874	Tropical Forest Soil	MNAPFLSRVLRSYQQRAATYLYERDAAFSIAPLGA
Ga0307292_104781672	3300028811	Soil	MNAPFRARVLRSYQQRAATWLYERDAAVLIAPLGAGK
Ga0318516_104498531	3300031543	Soil	MDALLRTRVLYGYQQRAATYFYERNAAFLIAPLGAGKGAAALTALAELI
Ga0318528_102120372	3300031561	Soil	MNAPFPCRVLRSYQQRSATYLYERDAAFLVAPLGAGKGAAALTAIAELIHD
Ga0318528_105457143	3300031561	Soil	MNAPFLARILRSYQERAATYLYERDAAFLIAPLGAGKGAAALTAAAELIRDGE
Ga0310915_104477242	3300031573	Soil	MNAPFSHRVLRCCLERAATWLYEHDAAFLIAPLGAGKDAAALTA
Ga0310915_112560981	3300031573	Soil	MNAPFTARILRSYQQRAATFLYERDAAFLIAPLGAGKGAAALTALADLV
Ga0318542_104098692	3300031668	Soil	MNAPFLTRVLRSYQQRAATFLYERDAAVLVAPLGAG
Ga0318561_100218701	3300031679	Soil	LNAPFITRVLRSYQQRAATYLYERDAAFLVAPLGAGKGAAALTA
Ga0318561_100314173	3300031679	Soil	MNAPFIPRALYSYQNRAATFFYERDAALLVAPLGAGKGAA
Ga0318574_100049596	3300031680	Soil	MNAPFAARVLRSYQQRAATWLYEHDGAFMVAPLGAGKGAA
Ga0318574_100654272	3300031680	Soil	MNAPFVARVLRSYQQRAATYLYERDAAFCIAPLGAGKGAAALTAVADLIRDDTAATH
Ga0318574_105019231	3300031680	Soil	MNAPFVARVLRSYQQRAATYLYESDAAFLIAPLGAGKGAAALTALADLIRDG
Ga0306917_106373231	3300031719	Soil	MNAPFSHRVLRSYQERAATWLYEHDAAFLIAPLGAGK
Ga0318500_105698501	3300031724	Soil	MHAPFLPRILRSYQQRAATFLYERDAAFLIAPLGAGKGAAALTALAE
Ga0318500_106001581	3300031724	Soil	LTAPLTTRTLYGYQQRATTWFYERDAAFLVAPLGAGKGAARN
Ga0306918_101400632	3300031744	Soil	MNAPFVARVLRSYQQRAATYLYESDAAFLIAPLGAGKGAAALTAIAELI
Ga0306918_105760031	3300031744	Soil	MSAARALYGYQQRAATWFYERDAAFLVAPLGAGKGAAALTA
Ga0306918_115010451	3300031744	Soil	MDAPLHTRVLYGYQQRAATFLYERDAAFMVAPLGAGKGAAALTALA
Ga0318492_101212221	3300031748	Soil	MNAPFTPRVLYSYQNRAATFFYERDAALLVAPLGAGKGAAALTALAD
Ga0318494_108827871	3300031751	Soil	MNAPFLARVLRGYQQRSATYHRAATFFYERDAAFLMAPLGAGKGAAALTAFAELVR
Ga0318554_104789341	3300031765	Soil	MNAPFLSRVLRSYQQRAATFLYERDAAVLVAPLGAGKGAAALT
Ga0318509_100745161	3300031768	Soil	LNAPFITRVLRSYQNRAATFFYERDAAFLIAPLGAG
Ga0318509_103329651	3300031768	Soil	MNAPFLSRVLRSYQQRAATFLYERDAAVLVAPLGAGKGAAAL
Ga0318509_103673691	3300031768	Soil	MNAPILALARVLRSYQQRAATYLYESNTAFLIAPLGAGKGAAALTAIAELIRD
Ga0318521_103890362	3300031770	Soil	LNAPFLARVLRSYQQRAATYLYERDAAFLIAPLGAGKGAAALTALADLVRDGE
Ga0318552_100055971	3300031782	Soil	MYAPLHTRILYGYQQRAATWFYERDAAFLVAPLGAGKGAAALT
Ga0318552_101710441	3300031782	Soil	LNAPFITRVLRSYQQRAATYLYERDAAFLVAPLGAGKGAAA
Ga0318529_105581692	3300031792	Soil	MNAPFTARVLYGYQQRAATFFYERDAAFLVAPLGA
Ga0318503_100141921	3300031794	Soil	MNAPFLARVLRSYQQRAATYLYERDAAFLIAPLGAG
Ga0318565_100517032	3300031799	Soil	MNAPFTARTLYGYQQRAATFFYERDAAFLVAPLGAGKGAAALTALAEL
Ga0318497_102001151	3300031805	Soil	MNAPFTARILRSYQSRAATWLYERDAAFLIAPLGAG
Ga0318497_107538592	3300031805	Soil	MNAPCLARVLRSYQQRGATFLYERDAAFTVAPLGAGKSTIALTAL
Ga0318499_100833752	3300031832	Soil	MDAPLHTRILYGYQQRAATWFYERDAAFLVAPLGAGKGAAALTALAGLI
Ga0318499_101813632	3300031832	Soil	LNAPFITRVLRSYQQRAATYLYERDAAFLVAPLGAGK
Ga0310917_104515772	3300031833	Soil	LSAPFITRVLRSYQQRAATYLYERDAAFLVAPLGAGKGAAA
Ga0318517_101001151	3300031835	Soil	MNAPSVTRALYSYQNRAATFFYERDAAFLVAPLGAGKGA
Ga0318511_101787602	3300031845	Soil	MNAPLPRMLRSYQQRAATWLYERDAAFLIAPLGAGKGAAALTA
Ga0318511_103067001	3300031845	Soil	MTRALYSYQNRAATFFYERDAAFLVAPLGAVLIGI
Ga0318511_105565811	3300031845	Soil	MNAPFLSRVLRSYQQRAATFLYERDAAVLVAPLGAGKGA
Ga0318512_100875502	3300031846	Soil	LNAPFITRVLRSYQQRAATYLYERDAAFLVAPLGAGKGAAAL
Ga0318527_101236082	3300031859	Soil	MNAPLVARILRSYQQRAATFLYERDSAFAVMPLGAGKGAAALTALADL
Ga0318495_100526881	3300031860	Soil	MDAPLHTRILYGYQQRAATWFYERDAAFLVAPLGAG
Ga0306919_105724611	3300031879	Soil	LNAPFITRVLYSYQNRAATFFYERDAAFLVAPLGA
Ga0306919_113862842	3300031879	Soil	MNAPFTARTLYGYQQRAATFFYERDAAFLVAPLGAGK
Ga0306919_114075472	3300031879	Soil	MNAPFLPRTLRSYQQRAATYLYERDAAFLIAPLGAGKG
Ga0318544_100490001	3300031880	Soil	MNAPLVARILRSYQQRAATFLYERDSAFAVMPLGAG
Ga0318544_103529781	3300031880	Soil	MNAPFTARILRSYQQRAATFLYERDAAFLIAPLGAGKGAAALTALADL
Ga0306925_100871993	3300031890	Soil	MNAPFTARILRSYQQRAATFLYERDAAFLIAPLGAGKGAAALTALADLVRDEE
Ga0306925_120081571	3300031890	Soil	LNAPPITRALRSYQSRAATWLYERDAAFLIAPLGAGK
Ga0318536_103089212	3300031893	Soil	MNAPFLTRVLRSYQQRAATFLYERDAAVLVAPLGAGKGAAALT
Ga0318551_106020771	3300031896	Soil	LNAPFITRVLRSYQQRAATYLYERDAAFLVAPLGAGKGAAALTAI
Ga0318520_110777702	3300031897	Soil	LNAPFITRVLYSYQNRAATFFYERDAAFLVAPLGSGKGAAAL
Ga0306923_116755212	3300031910	Soil	MNAPFLSRVLRSYQQRAATYLYESDAAFLIAPLGAGKGAAALTAFADLVRDE
Ga0306921_107322292	3300031912	Soil	LNAPFITRVLRSYQQRAATYLYERDAAFLIAPLGAGKGAAALT
Ga0306921_119699532	3300031912	Soil	MNAPFTARVLYGYQQRAATFFYERDAAFLVAPLGAGKGAAALTALADLIR
Ga0310912_110090281	3300031941	Soil	MNAPFIARVLYGYQQRAATFFYERDAAFLVAPLGAGKGAA
Ga0310913_104062661	3300031945	Soil	MNAPFLARVLRSYQQRAATYLYESDAVFLIAPLGAGKGAAA
Ga0310913_105154462	3300031945	Soil	MNAPPRILRTYQQRTATYLYERDAAFAIAPLGAGK
Ga0310913_106495863	3300031945	Soil	MSAARALYGYQQRAATFFYERDAAFLVAPLGAGKGA
Ga0310910_103537191	3300031946	Soil	LNAPFITRVLRSYQQRAATYLYERDAAFLVTPLGAGKGAAALTAVAELIRDGE
Ga0310910_109828091	3300031946	Soil	MNAPFLARVLRSYQERAATWLYEHDAAFLIAPLGAGKGAAALTAIAELIRDG
Ga0310910_110464522	3300031946	Soil	LNAPFITRVLYSYQNRAATFFYERDAAFLVAPLGAGKGAAALTALADLI
Ga0310909_105208071	3300031947	Soil	MKRVLYSYQNRAATFFYEHDAAFLVAPLGAGKGAAALTALAELVRDEER
Ga0310909_112561352	3300031947	Soil	MNAPFLSRVLRSYQQRAATYLYESDTAFLIAPLGAGKGA
Ga0306926_111518062	3300031954	Soil	MNVPLPRMLRSYQQRSATWLYERDAAFLIAPLGAGKGAAALTALVDLVRDEE
Ga0318531_102444991	3300031981	Soil	MNAPFVARVLRSYQQRAATWLYEHDGAFMVAPLGAGKGAAA
Ga0306922_115294361	3300032001	Soil	MSAARVLYSYQQRAATFFYERDAAFLVAPLGAGKG
Ga0306922_119948752	3300032001	Soil	MNAPFLARVLRGYQQRSATYLYEKDAAFLVAPLGA
Ga0306922_120748861	3300032001	Soil	MNAPFLARILRSYQQRAATYLYERDAAFLIAPLGAGKGA
Ga0318569_100471971	3300032010	Soil	MNAPFAARVLRSYQQRAATWLYEHDGAFMVAPLGAGKGAAAL
Ga0318569_102923721	3300032010	Soil	MNAPFLIRVLRSYQQRAATYLYESDTAFLIAPLGAG
Ga0318507_100277861	3300032025	Soil	MNAPSVTRALYSYQNRAATFFYERDAAFLVAPLGAGKGAAALTALADLI
Ga0310911_100804531	3300032035	Soil	LNAPFITRVLRSYQQRAATYLYERDAAFLVAPLGAGKGAAALTALADLIR
Ga0318559_100257252	3300032039	Soil	LNAPFITRVLRSYQQRAATYLYERDAAFLVAPLGAGKGAAALSA
Ga0318545_101000862	3300032042	Soil	LNAPFITRVLYSYQNRAATFFYERDAAFLVAPLGAGK
Ga0318545_103684151	3300032042	Soil	MNAPFLSRVLRSYQQRAATFLYERDAAVLVAPLGAG
Ga0318556_104237461	3300032043	Soil	MNAPFTPRVLYSYQNRAATFFYERDAALLVAPLGAGKGAAALTALA
Ga0318556_104891492	3300032043	Soil	MNAPLPRMLRSYQQRAATWLYERDAAFLIAPLGAGKGAAALTAIAELIRDGHR
Ga0318532_100090991	3300032051	Soil	LNAPFITRVLRSYQQRAATYLYERDAAFLVAPLGAGKGAAALTAIAE
Ga0318532_103456493	3300032051	Soil	LNAPFITRVLYGYQQRTATFFYERDAAFLVAPLGAGKG
Ga0318570_104372292	3300032054	Soil	MNAPFLARVLRSYQQRAATYLYESDAVFLIAQLGAGKGAAALTAFADLVRDE
Ga0318575_105667052	3300032055	Soil	MNAPLVARILRSYQQRAATFLYERDSAFAVMPLGAGKGAAALTALAD
Ga0318510_103970072	3300032064	Soil	MNAPFATRTLYQYQQRAATFFYERDAGFLIAPLASTKGRDE
Ga0318524_107509551	3300032067	Soil	MNAPFLSRVLRSYQQRAATFLYERDAAVLVAPLGAGKGAAALTALAELIR
Ga0306924_101333571	3300032076	Soil	LTAPLTTRTLYGYQQRATTWFYERDAAFLVAPLGAGKGAAALTALADL
Ga0306924_104228171	3300032076	Soil	MSAARTLYSYQNRAATFFYERDAAFLVAPLGAGKGAAALTALAELVRD
Ga0306924_106316722	3300032076	Soil	MNAPFLPRVLRLRSYQQRAATYLYERDAAVLIAPLGAGKGAAALTAFADLVR
Ga0318518_100202683	3300032090	Soil	MNAPFATRTLYQYQQRAATFFYERDAGFLIAPLGAGKGAAALTALA
Ga0318518_103028963	3300032090	Soil	MSAARALYSYQQRAATFFYERDAAFLVAPLGAGKGAAALTALAD
Ga0318577_100588971	3300032091	Soil	MNAPFLSRVLRSYQQRAATFLYERDAAVLVAPLGAGKGAAALTAIAELIR
Ga0307470_103920761	3300032174	Hardwood Forest Soil	MNAPLPRILRSYQERAATFLYERDSAQLIAPLGAGKGAAALT
Ga0306920_1023995281	3300032261	Soil	MNAPFLARTLRSYQQRAATFLYERDAALLIAPLGAGKGAAALTAL
Ga0306920_1039371751	3300032261	Soil	MNAPFTARVLRSYQQRAATWLYEHDGAFMVAPLGAGKGAAALI
Ga0306920_1042048462	3300032261	Soil	MNAPLLGRVLRSYQQRAATYLYERDAAFLVAPLGAGKGA
Ga0310914_100388974	3300033289	Soil	MNAPFLARVLRSYQQRAATYLYERDAAFLIAPLGAGKGAAALTALAELI
Ga0310914_106297411	3300033289	Soil	MNAPILALARVLRSYQQRAATYLYESNAAFLIAPLGA
Ga0318519_105884051	3300033290	Soil	MNAPFTARILRSYQSRAATWLYERDAAFLIAPLGAGKGAAAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F051767

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences